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Conserved domains on  [gi|2104903399|ref|WP_224867088|]
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ion channel [Microbulbifer agarilyticus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ion_trans_2 super family cl47994
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 64-136 7.83e-05

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


The actual alignment was detected with superfamily member pfam07885:

Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 38.79  E-value: 7.83e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2104903399  64 VLEVMTWARVYRWLGAFSEAEP--ALYFSMVTYTTLGFGDIV-LESSLRLLSSFQAAIGIIMFGWTTAVVLAVVQR 136
Cdd:pfam07885   3 LLLVLIFGTVYYLLEEGWEWSFldALYFSFVTLTTVGYGDIVpLTDAGRLFTIFYILIGIPLFAIFLAVLGRFLTE 78
 
Name Accession Description Interval E-value
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 64-136 7.83e-05

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 38.79  E-value: 7.83e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2104903399  64 VLEVMTWARVYRWLGAFSEAEP--ALYFSMVTYTTLGFGDIV-LESSLRLLSSFQAAIGIIMFGWTTAVVLAVVQR 136
Cdd:pfam07885   3 LLLVLIFGTVYYLLEEGWEWSFldALYFSFVTLTTVGYGDIVpLTDAGRLFTIFYILIGIPLFAIFLAVLGRFLTE 78
 
Name Accession Description Interval E-value
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 64-136 7.83e-05

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 38.79  E-value: 7.83e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2104903399  64 VLEVMTWARVYRWLGAFSEAEP--ALYFSMVTYTTLGFGDIV-LESSLRLLSSFQAAIGIIMFGWTTAVVLAVVQR 136
Cdd:pfam07885   3 LLLVLIFGTVYYLLEEGWEWSFldALYFSFVTLTTVGYGDIVpLTDAGRLFTIFYILIGIPLFAIFLAVLGRFLTE 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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