|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
8-1048 |
5.40e-159 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 495.97 E-value: 5.40e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 8 LLIAVSLAQLLAQPPAWGLSQFEEFHSYPYLDKAYRAAEQRDWAQVQQLMEHLISQVPENVEAYRLLAQALAKQGNLDGA 87
Cdd:PRK09782 18 LSTSALADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 88 MAALGALDANVAAVQINALRQAWIADGHASEGELTLWLSETSGSAREALWSAQADY------LRATRGARAALEwLATVP 161
Cdd:PRK09782 98 RLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVgqnalrLAQLPVARAQLN-DATFA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 162 ARQDALAQDRYRAALAEQIQDWNGVIDALVPHAMEDTLNDDDWRRLSIAMIQTDDARGINAVIARLPEGDVRHFVlrAGA 241
Cdd:PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRI--TYA 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 242 DRAIALGYPGIAQRWLATLeQSDQLDASDtrkllqtslavgdtdrvrqmasrqdmdcltlvswlsdhgdpealstftecd 321
Cdd:PRK09782 255 TALAYRGEKARLQHYLIEN-KPLFTTDAQ--------------------------------------------------- 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 322 akegPQSWLILADRLDALDLLETTELPEAWHQRRDRVL---LDRYRADGLDDKALRLLTRQPQTPAILRERAELTQRLGR 398
Cdd:PRK09782 283 ----EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVgatLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 399 PEAAELWQQHYH-LTGDSGSLEQASYLYLASQRPQAARRLLEQAFKLA-PERLSATSLARLAQLYADDNAGVTDSTLEAL 476
Cdd:PRK09782 359 AEALRLARLLYQqEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQgDARLSQTLMARLASLLESHPYLATPAKVAIL 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 477 VrrPRLADTERNNLLEQLARH-DRCPVVRSVADASTPP-----WAALGICSQD-RPAQAA-AYFQRALtqltpRQPEAGA 548
Cdd:PRK09782 439 S--KPLPLAEQRQWQSQLPGIaDNCPAIVRLLGDMSPSydaaaWNRLAKCYRDtLPGVALyAWLQAEQ-----RQPDAWQ 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 549 vtaamtqpeiqaRKRLAFALFAAGDPDAAWRQWRAFerdgaSDGELDQADRLAGARSALASGDAEGAWRWWPE-DSDSPE 627
Cdd:PRK09782 512 ------------HRAVAYQAYQVEDYATALAAWQKI-----SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQaEQRGLG 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 628 ARLLGARIALARHDDAGAVALARGAVAAAGGNPKTDAAVleGASQVARQAGDPTLARRWLTQAQAASPGSPRLARELGLT 707
Cdd:PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYV--ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 708 LAATEEAGARSEaiaLLERARPAYPEDYVSAATLGNLYSTIGDNARSMTRIEDAIDLQPfDLAVGEDSLEAMAERRYRLR 787
Cdd:PRK09782 653 LWDSGDIAQSRE---MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID-NQALITPLTPEQNQQRFNFR 728
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 788 RAHETLTRRDRITLTSswsptspTPGIRSDPSNHDNDDDSGHD-----INTQVVQWDHALGHDPIHQGRELAGYMR--AI 860
Cdd:PRK09782 729 RLHEEVGRRWTFSFDS-------SIGLRSGAMSTANNNVGGAApgksyRSYGQLEAEYRLGRNMLLEGDLLSVYSRvfAD 801
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 861 IGGDDRDDYGRGRSLGLGLRAKPLARHNLNLYAEIFAESQKNDGEHtdyNLLLRATGSFLDQGDYSSEWRASQDQWNERS 940
Cdd:PRK09782 802 TGENGVMMPVKNPMSGTGLRWKPLRDQIFFLAVEQQLPLNGQNGAS---DTMLRASASFFNGGKYSDEWHPNGSGWFAQN 878
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 941 LYLDAAWWTQRGDVQLFGRYRQgrTFKLPTRSAQTLMPYASLQATSHDTTSWDEDVRLAAGLRWERWYDEDHYNAFLRKL 1020
Cdd:PRK09782 879 LYLDAAQYTRQDIQAWTADYRV--SWHQKVANGQTLEPYAHVQDNGYRDKGTQGAQLGGVGVRWNIWTGETHYNAWPHKV 956
|
1050 1060 1070
....*....|....*....|....*....|
gi 2088337517 1021 SVSTEYQQSLGG--NLYQERDGWMIHLELS 1048
Cdd:PRK09782 957 SVGVEYQHTFKAinQRNGERNNAFLTIGVH 986
|
|
| NfrA_C |
pfam13283 |
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is ... |
875-1032 |
3.53e-21 |
|
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is found at the C-terminus of bacteriophage N4 adsorption protein A, in association with an N-terminal region of TPR repeats.
Pssm-ID: 433085 Cd Length: 173 Bit Score: 91.67 E-value: 3.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 875 LGLGLRAKPLARHNLNLYAE----IFAESQKNDgehtdynLLLRATGSfldqGDYSSEWRASQDQWNERSLYLDAAWWTQ 950
Cdd:pfam13283 11 GGLGLRWKPLSDQNLVLSAErlfpIGGQAREND-------WLLRAGYS----GGYGTDLRVDVPSWQTQQLYAEAGRYLQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 951 RGDVQLFGRYRQGRTFKLPTRSAQ-TLMPYASLQATSHDTTSWDEDVRLAAGLRWERWYDEDHYNAFLRKLSVSTEYQQS 1029
Cdd:pfam13283 80 QDRRYLTAEARLGRSYRLDDISSRlVVFPYAVLGADYDSAATRGFALGAGPGLAWRYWFREDHYHAPRSYLDLTLQYRFK 159
|
...
gi 2088337517 1030 LGG 1032
Cdd:pfam13283 160 LAG 162
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
522-795 |
2.98e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.19 E-value: 2.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 522 QDRPAQAAAYFQRALtQLTPRQPEAgavtaamtqpeiqaRKRLAFALFAAGDPDAAWRqwrAFERDGASDGELDQAdRLA 601
Cdd:COG2956 21 NGQPDKAIDLLEEAL-ELDPETVEA--------------HLALGNLYRRRGEYDRAIR---IHQKLLERDPDRAEA-LLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 602 GARSALASGDAEGAWRWW----PEDSDSPEARLLGARIALARHDdagAVALARGAVAAAGGNPKTDAAVLEGAsQVARQA 677
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLekllELDPDDAEALRLLAEIYEQEGD---WEKAIEVLERLLKLGPENAHAYCELA-ELYLEQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 678 GDPTLARRWLTQAQAASPGSPRLARELGLTLaatEEAGARSEAIALLERARPAYPEDYVSAATLGNLYSTIGDNARSMTR 757
Cdd:COG2956 158 GDYDEAIEALEKALKLDPDCARALLLLAELY---LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234
|
250 260 270
....*....|....*....|....*....|....*...
gi 2088337517 758 IEDAIDLQPFDLAVgeDSLEAMAERRYRLRRAHETLTR 795
Cdd:COG2956 235 LRKALELDPSDDLL--LALADLLERKEGLEAALALLER 270
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
28-771 |
1.67e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.38 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 28 QFEEFHSYPYLDKAYRAAEQRDWAQVQQLMEHLISQVPENVEAYRLLAQALAKQGNLDGAMAALG---ALDANVAAVQIN 104
Cdd:TIGR02917 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRkaiALRPNNIAVLLA 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 105 aLRQAWIADGHASEGEltlwlsetsgsarealwsAQADYLRATrgaraalewlatvpARQDALAQdRYRAALAEQIQDWN 184
Cdd:TIGR02917 233 -LATILIEAGEFEEAE------------------KHADALLKK--------------APNSPLAH-YLKALVDFQKKNYE 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 185 GVIDALVPHAMEDTLNDDDWRRLSIAMIQTDD---ARG-INAVIARLPEgdvRHFVLRAGADRAIALGYPGIAQRWLATL 260
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNleqAYQyLNQILKYAPN---SHQARRLLASIQLRLGRVDEAIATLSPA 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 261 EQSDQLDASDTRKLLQTSLAVGDTDRvrqmASRQDMDCLTLVSWLSDHGDPEALSTFTECDAKEGpqswliLADRLDALD 340
Cdd:TIGR02917 356 LGLDPDDPAALSLLGEAYLALGDFEK----AAEYLAKATELDPENAAARTQLGISKLSQGDPSEA------IADLETAAQ 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 341 LleTTELPEAwhqrrDRVLLDRYRADGLDDKAL----RLLTRQPQTPAIlreraeltqrlgrpeaaelwqqhYHLTGdsg 416
Cdd:TIGR02917 426 L--DPELGRA-----DLLLILSYLRSGQFDKALaaakKLEKKQPDNASL-----------------------HNLLG--- 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 417 sleqasYLYLASQRPQAARRLLEQAFKLAPERLSA-TSLARLAqlYADDNAGVTDSTLEALVRrprlADTERNNLLEQLA 495
Cdd:TIGR02917 473 ------AIYLGKGDLAKAREAFEKALSIEPDFFPAaANLARID--IQEGNPDDAIQRFEKVLT----IDPKNLRAILALA 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 496 RhdrcpvvrsVADASTPPWAALGICSQDRPAQAAAY------FQRALTQLTPRQPEAGAVTAAMTQPE-IQARKRLAFAL 568
Cdd:TIGR02917 541 G---------LYLRTGNEEEAVAWLEKAAELNPQEIepalalAQYYLGKGQLKKALAILNEAADAAPDsPEAWLMLGRAQ 611
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 569 FAAGDPDAAWRQWR-AFERDGASDGELDQ-ADRLAGAR-SALASGDAEGAWRWwpeDSDSPEARLLGARIALArhddAGA 645
Cdd:TIGR02917 612 LAAGDLNKAVSSFKkLLALQPDSALALLLlADAYAVMKnYAKAITSLKRALEL---KPDNTEAQIGLAQLLLA----AKR 684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 646 VALARGAVAAAGGNPKTDAAVLEGASQVARQAGDPTLARRWLTQAQAASPGSPRLAReLGLTLAAteeAGARSEAIALLE 725
Cdd:TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLA---SGNTAEAVKTLE 760
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 2088337517 726 RARPAYPEDYVSAATLGNLYSTIGDNARSMTRIEDAIDLQPFDLAV 771
Cdd:TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
8-1048 |
5.40e-159 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 495.97 E-value: 5.40e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 8 LLIAVSLAQLLAQPPAWGLSQFEEFHSYPYLDKAYRAAEQRDWAQVQQLMEHLISQVPENVEAYRLLAQALAKQGNLDGA 87
Cdd:PRK09782 18 LSTSALADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 88 MAALGALDANVAAVQINALRQAWIADGHASEGELTLWLSETSGSAREALWSAQADY------LRATRGARAALEwLATVP 161
Cdd:PRK09782 98 RLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVgqnalrLAQLPVARAQLN-DATFA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 162 ARQDALAQDRYRAALAEQIQDWNGVIDALVPHAMEDTLNDDDWRRLSIAMIQTDDARGINAVIARLPEGDVRHFVlrAGA 241
Cdd:PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRI--TYA 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 242 DRAIALGYPGIAQRWLATLeQSDQLDASDtrkllqtslavgdtdrvrqmasrqdmdcltlvswlsdhgdpealstftecd 321
Cdd:PRK09782 255 TALAYRGEKARLQHYLIEN-KPLFTTDAQ--------------------------------------------------- 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 322 akegPQSWLILADRLDALDLLETTELPEAWHQRRDRVL---LDRYRADGLDDKALRLLTRQPQTPAILRERAELTQRLGR 398
Cdd:PRK09782 283 ----EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVgatLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 399 PEAAELWQQHYH-LTGDSGSLEQASYLYLASQRPQAARRLLEQAFKLA-PERLSATSLARLAQLYADDNAGVTDSTLEAL 476
Cdd:PRK09782 359 AEALRLARLLYQqEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQgDARLSQTLMARLASLLESHPYLATPAKVAIL 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 477 VrrPRLADTERNNLLEQLARH-DRCPVVRSVADASTPP-----WAALGICSQD-RPAQAA-AYFQRALtqltpRQPEAGA 548
Cdd:PRK09782 439 S--KPLPLAEQRQWQSQLPGIaDNCPAIVRLLGDMSPSydaaaWNRLAKCYRDtLPGVALyAWLQAEQ-----RQPDAWQ 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 549 vtaamtqpeiqaRKRLAFALFAAGDPDAAWRQWRAFerdgaSDGELDQADRLAGARSALASGDAEGAWRWWPE-DSDSPE 627
Cdd:PRK09782 512 ------------HRAVAYQAYQVEDYATALAAWQKI-----SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQaEQRGLG 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 628 ARLLGARIALARHDDAGAVALARGAVAAAGGNPKTDAAVleGASQVARQAGDPTLARRWLTQAQAASPGSPRLARELGLT 707
Cdd:PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYV--ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 708 LAATEEAGARSEaiaLLERARPAYPEDYVSAATLGNLYSTIGDNARSMTRIEDAIDLQPfDLAVGEDSLEAMAERRYRLR 787
Cdd:PRK09782 653 LWDSGDIAQSRE---MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID-NQALITPLTPEQNQQRFNFR 728
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 788 RAHETLTRRDRITLTSswsptspTPGIRSDPSNHDNDDDSGHD-----INTQVVQWDHALGHDPIHQGRELAGYMR--AI 860
Cdd:PRK09782 729 RLHEEVGRRWTFSFDS-------SIGLRSGAMSTANNNVGGAApgksyRSYGQLEAEYRLGRNMLLEGDLLSVYSRvfAD 801
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 861 IGGDDRDDYGRGRSLGLGLRAKPLARHNLNLYAEIFAESQKNDGEHtdyNLLLRATGSFLDQGDYSSEWRASQDQWNERS 940
Cdd:PRK09782 802 TGENGVMMPVKNPMSGTGLRWKPLRDQIFFLAVEQQLPLNGQNGAS---DTMLRASASFFNGGKYSDEWHPNGSGWFAQN 878
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 941 LYLDAAWWTQRGDVQLFGRYRQgrTFKLPTRSAQTLMPYASLQATSHDTTSWDEDVRLAAGLRWERWYDEDHYNAFLRKL 1020
Cdd:PRK09782 879 LYLDAAQYTRQDIQAWTADYRV--SWHQKVANGQTLEPYAHVQDNGYRDKGTQGAQLGGVGVRWNIWTGETHYNAWPHKV 956
|
1050 1060 1070
....*....|....*....|....*....|
gi 2088337517 1021 SVSTEYQQSLGG--NLYQERDGWMIHLELS 1048
Cdd:PRK09782 957 SVGVEYQHTFKAinQRNGERNNAFLTIGVH 986
|
|
| NfrA_C |
pfam13283 |
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is ... |
875-1032 |
3.53e-21 |
|
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is found at the C-terminus of bacteriophage N4 adsorption protein A, in association with an N-terminal region of TPR repeats.
Pssm-ID: 433085 Cd Length: 173 Bit Score: 91.67 E-value: 3.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 875 LGLGLRAKPLARHNLNLYAE----IFAESQKNDgehtdynLLLRATGSfldqGDYSSEWRASQDQWNERSLYLDAAWWTQ 950
Cdd:pfam13283 11 GGLGLRWKPLSDQNLVLSAErlfpIGGQAREND-------WLLRAGYS----GGYGTDLRVDVPSWQTQQLYAEAGRYLQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 951 RGDVQLFGRYRQGRTFKLPTRSAQ-TLMPYASLQATSHDTTSWDEDVRLAAGLRWERWYDEDHYNAFLRKLSVSTEYQQS 1029
Cdd:pfam13283 80 QDRRYLTAEARLGRSYRLDDISSRlVVFPYAVLGADYDSAATRGFALGAGPGLAWRYWFREDHYHAPRSYLDLTLQYRFK 159
|
...
gi 2088337517 1030 LGG 1032
Cdd:pfam13283 160 LAG 162
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
522-795 |
2.98e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.19 E-value: 2.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 522 QDRPAQAAAYFQRALtQLTPRQPEAgavtaamtqpeiqaRKRLAFALFAAGDPDAAWRqwrAFERDGASDGELDQAdRLA 601
Cdd:COG2956 21 NGQPDKAIDLLEEAL-ELDPETVEA--------------HLALGNLYRRRGEYDRAIR---IHQKLLERDPDRAEA-LLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 602 GARSALASGDAEGAWRWW----PEDSDSPEARLLGARIALARHDdagAVALARGAVAAAGGNPKTDAAVLEGAsQVARQA 677
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLekllELDPDDAEALRLLAEIYEQEGD---WEKAIEVLERLLKLGPENAHAYCELA-ELYLEQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 678 GDPTLARRWLTQAQAASPGSPRLARELGLTLaatEEAGARSEAIALLERARPAYPEDYVSAATLGNLYSTIGDNARSMTR 757
Cdd:COG2956 158 GDYDEAIEALEKALKLDPDCARALLLLAELY---LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234
|
250 260 270
....*....|....*....|....*....|....*...
gi 2088337517 758 IEDAIDLQPFDLAVgeDSLEAMAERRYRLRRAHETLTR 795
Cdd:COG2956 235 LRKALELDPSDDLL--LALADLLERKEGLEAALALLER 270
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
662-766 |
6.58e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 6.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 662 TDAAVLEGASQVARQAGDPTLARRWLTQAQAASPGSPRLARELGLTLAateEAGARSEAIALLERARPAYPEDYVSAATL 741
Cdd:COG4783 36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL---KAGDYDEALALLEKALKLDPEHPEAYLRL 112
|
90 100
....*....|....*....|....*
gi 2088337517 742 GNLYSTIGDNARSMTRIEDAIDLQP 766
Cdd:COG4783 113 ARAYRALGRPDEAIAALEKALELDP 137
|
|
| PksD |
COG3321 |
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ... |
86-778 |
1.18e-04 |
|
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 46.40 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 86 GAMAALGALDANVAAV----------QINALRQAWIADGHASEGELTLWLSETSGSAR----------EALWSAQADYLR 145
Cdd:COG3321 657 GAMLAVGLSEEEVEALlagydgvsiaAVNGPRSTVVSGPAEAVEALAARLEARGIRARrlpvshafhsPLMEPALEEFRA 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 146 ATRGAR---AALEWLATV---PARQDALAQD----------RYRAALAEQIQDWNGVIDALVPHAMedtlndddwrrLSI 209
Cdd:COG3321 737 ALAGVTpraPRIPLISNVtgtWLTGEALDADywvrhlrqpvRFADAVEALLADGVRVFLEVGPGPV-----------LTG 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 210 AMIQTDDARGINAVIARLPEGDVRHFVLRAGADRAIALGYP-------GIAQRWLATL--------EQSDQLDASDTRKL 274
Cdd:COG3321 806 LVRQCLAAAGDAVVLPSLRRGEDELAQLLTALAQLWVAGVPvdwsalyPGRGRRRVPLptypfqreDAAAALLAAALAAA 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 275 LQTSLAVGDTDRVRQMASRQDMDCLTLVSWLSDHGDPEALSTFTECDAKEGPQSWLILADRLDALDLLETTELPEAWHQR 354
Cdd:COG3321 886 LAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALL 965
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 355 RDRVLLDRYRADGLDDKALRLLTRQPQTPAILRERAELTQRLGRPEAAELWQQHYHLTGDSGSLEQASYLYLASQRPQAA 434
Cdd:COG3321 966 LLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAA 1045
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 435 RRLLEQAFKLAPERLSATSLARLAQLYADDNAGVTDSTLEALVRRPRLADTErnnLLEQLARHDRCPVVRSVADASTPPW 514
Cdd:COG3321 1046 AALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALAL---ALAALAAALLLLALLAALALAAAAA 1122
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 515 AALGICSQDRPAQAAAYFQRALTQLTPRQPEAGAVTAAMTQPEIQARKRLAFALFAAGDPDAAWRQWRAFERDGASDGEL 594
Cdd:COG3321 1123 ALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALALAAALAAALAGLAALLLAALLA 1202
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 595 DQADRLAGARSALASGDAEGAWRWWPEDSDSPEARLLGARIALARHDDAGAVALARGAVAAAGGNPKTDAAVLEGASQVA 674
Cdd:COG3321 1203 ALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAALALLAAAAGLAALAAAAAAAA 1282
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 675 RQAGDPTLARRWLTQAQAASPGSPRLARELGLTLAATEEAGARSEAIALLERARPAYPEDYVSAATLGNLYSTIGDNARS 754
Cdd:COG3321 1283 AALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAALAAAVAAALALAAAAAAAAAAAAAAAAAAA 1362
|
730 740
....*....|....*....|....
gi 2088337517 755 MTRIEDAIDLQPFDLAVGEDSLEA 778
Cdd:COG3321 1363 LAAAAGAAAAAAALALAALAAAVA 1386
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
550-766 |
1.21e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 46.14 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 550 TAAMTQPEIQARKRLAFALFAAGDPDAAWRQWRAFERDGASDGELDQADRLAGARSALASGDAEGAWRWWPEDSDSPEAR 629
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 630 LLGARIALARHDDAgavalARGAVAAAGGNPkTDAAVLEGASQVARQAGDPTLARRWLTQAQAASPGSPRLARELGLTLa 709
Cdd:COG3914 84 AALLLQALGRYEEA-----LALYRRALALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL- 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2088337517 710 atEEAGARSEAIALLERARPAYPEDYVSAATLGNLYSTIGDNARSMTRIEDAIDLQP 766
Cdd:COG3914 157 --RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
589-771 |
2.05e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 589 ASDGELDQADRLAGARSALASGDAEGAWRWWPEDSDSPEARLLGARI-ALARHDDAGAVALARGAVAAAGGNPKTDAAVL 667
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLaALAEAAAAALLALAAGEAAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 668 EGASQVARQAGDPTLARRWLTQAQAASPGSPRLARELGLTLAAteeAGARSEAIALLERARPAYPEDYVSAATLGNLYST 747
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLA---LGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
170 180
....*....|....*....|....
gi 2088337517 748 IGDNARSMTRIEDAIDLQPFDLAV 771
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAEA 182
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
424-798 |
3.73e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 44.62 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 424 LYLASQRPQAARRLLEQAFKLAPERLSATSLARLAQLYADDNAGVTDSTLEALVRRPRLADTERNNLLEQLARHDRCPVV 503
Cdd:COG3903 554 FWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAA 633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 504 RSVADASTPPWAALGICSQDRPAQAAAYFQRALTQLTPRQPEAGAVTAAMTQPEIQARKRLAFALFAAGDPDAAWRQWRA 583
Cdd:COG3903 634 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAA 713
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 584 FERDGASDGELDQADRLAGARSALASGDAEGAWRWWPEDSDSPEARLLGARIALARHDDAGAVALARGAVAAAGGNPKTD 663
Cdd:COG3903 714 AAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAA 793
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 664 AAVLEGASQVARQAGDPTLARRWLTQAQAASPGSPRLARELGLTLAATEEAGARSEAIALLERARPAYPEDYVSAATLGN 743
Cdd:COG3903 794 AAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAA 873
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2088337517 744 LYSTIGDNARSMTRIEDAIDLQPFDLAVGEDSLEAMAERRYRLRRAHETLTRRDR 798
Cdd:COG3903 874 AAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAAAAAAAAA 928
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
33-157 |
1.23e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.02 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 33 HSYPYLDKAYRAAEQRDWAQVQQLMEHLISQVPENVEAYRLLAQALAKQGNLDGAMAAL-GALDANVAAVQI-NALRQAW 110
Cdd:COG2956 143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALeRALEQDPDYLPAlPRLAELY 222
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2088337517 111 IADGHASEGELTL--WLSETSGSareALWSAQADYLRATRGARAALEWL 157
Cdd:COG2956 223 EKLGDPEEALELLrkALELDPSD---DLLLALADLLERKEGLEAALALL 268
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
28-771 |
1.67e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.38 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 28 QFEEFHSYPYLDKAYRAAEQRDWAQVQQLMEHLISQVPENVEAYRLLAQALAKQGNLDGAMAALG---ALDANVAAVQIN 104
Cdd:TIGR02917 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRkaiALRPNNIAVLLA 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 105 aLRQAWIADGHASEGEltlwlsetsgsarealwsAQADYLRATrgaraalewlatvpARQDALAQdRYRAALAEQIQDWN 184
Cdd:TIGR02917 233 -LATILIEAGEFEEAE------------------KHADALLKK--------------APNSPLAH-YLKALVDFQKKNYE 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 185 GVIDALVPHAMEDTLNDDDWRRLSIAMIQTDD---ARG-INAVIARLPEgdvRHFVLRAGADRAIALGYPGIAQRWLATL 260
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNleqAYQyLNQILKYAPN---SHQARRLLASIQLRLGRVDEAIATLSPA 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 261 EQSDQLDASDTRKLLQTSLAVGDTDRvrqmASRQDMDCLTLVSWLSDHGDPEALSTFTECDAKEGpqswliLADRLDALD 340
Cdd:TIGR02917 356 LGLDPDDPAALSLLGEAYLALGDFEK----AAEYLAKATELDPENAAARTQLGISKLSQGDPSEA------IADLETAAQ 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 341 LleTTELPEAwhqrrDRVLLDRYRADGLDDKAL----RLLTRQPQTPAIlreraeltqrlgrpeaaelwqqhYHLTGdsg 416
Cdd:TIGR02917 426 L--DPELGRA-----DLLLILSYLRSGQFDKALaaakKLEKKQPDNASL-----------------------HNLLG--- 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 417 sleqasYLYLASQRPQAARRLLEQAFKLAPERLSA-TSLARLAqlYADDNAGVTDSTLEALVRrprlADTERNNLLEQLA 495
Cdd:TIGR02917 473 ------AIYLGKGDLAKAREAFEKALSIEPDFFPAaANLARID--IQEGNPDDAIQRFEKVLT----IDPKNLRAILALA 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 496 RhdrcpvvrsVADASTPPWAALGICSQDRPAQAAAY------FQRALTQLTPRQPEAGAVTAAMTQPE-IQARKRLAFAL 568
Cdd:TIGR02917 541 G---------LYLRTGNEEEAVAWLEKAAELNPQEIepalalAQYYLGKGQLKKALAILNEAADAAPDsPEAWLMLGRAQ 611
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 569 FAAGDPDAAWRQWR-AFERDGASDGELDQ-ADRLAGAR-SALASGDAEGAWRWwpeDSDSPEARLLGARIALArhddAGA 645
Cdd:TIGR02917 612 LAAGDLNKAVSSFKkLLALQPDSALALLLlADAYAVMKnYAKAITSLKRALEL---KPDNTEAQIGLAQLLLA----AKR 684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 646 VALARGAVAAAGGNPKTDAAVLEGASQVARQAGDPTLARRWLTQAQAASPGSPRLAReLGLTLAAteeAGARSEAIALLE 725
Cdd:TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLA---SGNTAEAVKTLE 760
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 2088337517 726 RARPAYPEDYVSAATLGNLYSTIGDNARSMTRIEDAIDLQPFDLAV 771
Cdd:TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
69-487 |
2.48e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 41.93 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 69 EAYRLLAQALAKQGNLDGAMA-ALGALDANVAAVQINALRQAWIADGHASEGELTLWLSETSGSAREALWSAQADYLRAT 147
Cdd:COG3903 513 DQLAWLARLDAEHDNLRAALRwALAHGDAELALRLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAA 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 148 RGARAALEWLATVPARQDALAQDRYRAALAEQIQDWNGVIDALVPHAMEDTLNDDDWRRLSIAMIQTDDARGINAVIARL 227
Cdd:COG3903 593 AAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAA 672
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 228 PEGDVRHFVLRAGADRAIALGYPGIAQRWLATLEQSDQLDASDTRKLLQTSLAVGDTDRVRQMASRQDMDCLTLVSWLSD 307
Cdd:COG3903 673 AAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAA 752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 308 HGDPEALSTFTECDAKEGPQSWLILADRLDALDLLETTELPEAWHQRRDRVLLDRYRADGLDDKALRLLTRQPQTPAILR 387
Cdd:COG3903 753 AAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAA 832
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 388 ERAELTQRLGRPEAAELWQQHYHLTGDSGSLEQASYLYLASQRPQAARRLLEQAFKLAPERLSATSLARLAQLYADDNAG 467
Cdd:COG3903 833 ALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAA 912
|
410 420
....*....|....*....|
gi 2088337517 468 VTDSTLEALVRRPRLADTER 487
Cdd:COG3903 913 AAAALAAAAAAAAAAAAAAA 932
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
357-499 |
2.76e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 40.87 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 357 RVLLDRYRADGLDDKAL----RLLTRQPQTPAILRERAELTQRLGRPEAA-ELWQQHYHLTGDS-GSLEQASYLYLASQR 430
Cdd:COG2956 114 RLLAEIYEQEGDWEKAIevleRLLKLGPENAHAYCELAELYLEQGDYDEAiEALEKALKLDPDCaRALLLLAELYLEQGD 193
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2088337517 431 PQAARRLLEQAFKLAPERLSAtsLARLAQLYA--DDNAGVTDSTLEALVRRPrlADTERNNLLEQLARHDR 499
Cdd:COG2956 194 YEEAIAALERALEQDPDYLPA--LPRLAELYEklGDPEEALELLRKALELDP--SDDLLLALADLLERKEG 260
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
47-96 |
5.27e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 5.27e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2088337517 47 QRDWAQVQQLMEHLISQVPENVEAYRLLAQALAKQGNLDGAMAALGALDA 96
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPA 50
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
522-747 |
5.42e-03 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 40.38 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 522 QDRPaQAAAYFQRALTQLTPRQPEAGAVTAAMTQPEIQARKRLAFALFAAGDPDAAWRQWRAFERDGASDGELDQADRLA 601
Cdd:COG0515 252 EERY-QSAAELAAALRAVLRSLAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 602 GARSALASGDAEGAWRWWPEDSDSPEARLLGARIALARHDDAGAVALARGAVAAAGGNPKTDAAVLEGASQVARQAGDPT 681
Cdd:COG0515 331 AAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAA 410
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2088337517 682 LARRWLTQAQAASPGSPRLARELGLTLAATEEAGARSEAIALLERARPAYPEDYVSAATLGNLYST 747
Cdd:COG0515 411 AAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAAAAAAAAPLLAALLAAAALAAAAAA 476
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
813-1043 |
5.94e-03 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 40.52 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 813 GIRSDPSNHDNDDDSGHDINTQVVQWDHALGHDPIHQGRELAGYMRAIIGGDDRDDYGRGRSLGLGLRAKPLARHNLNLY 892
Cdd:pfam00593 1 GWQLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLST 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 893 AEIFAESQKNDGEHTDYNLLLRATGSFLDQGDYSSEWRASQDqwNERSLYLDAAWWTQRGDVQLFGRYRQGRTFKLPTRS 972
Cdd:pfam00593 81 LRLGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGD--LELSLDLSHDLLLGVELRTAGLDYRRLDDDAYDPYD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 973 AQTLMPYASLQATSH-------DTTSWDEDVRLAAGLRWErWYDEDHYNAFLRKLSVSTEYQQSLG--GNLYQERDGWMI 1043
Cdd:pfam00593 159 PANPSSSSYSDTTTDsyglylqDNIKLTDRLTLTLGLRYD-HYSTDGDDGNGGGDNFSRSYSAFSPrlGLVYKPTDNLSL 237
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
427-644 |
7.91e-03 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 40.00 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 427 ASQRPQAAR---RLLEQAFKLAPERLSATSLARLAQLYADDNAGVTDSTLEALVRRPRLADTERNNLLEQLARHDRCPVV 503
Cdd:COG0515 251 PEERYQSAAelaAALRAVLRSLAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2088337517 504 RSVADASTPPWAALGICSQDRPAQAAAYFQRALTQLTPRQPEAGAVTAAMTQPEIQARKRLAFALFAAGDPDAAWRQWRA 583
Cdd:COG0515 331 AAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAA 410
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2088337517 584 FERDGASDGELDQADRLAGARSALASGDAEGAWRWWPEDSDSPEARLLGARIALARHDDAG 644
Cdd:COG0515 411 AAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAAAAAAAAPLLAALLAAAALA 471
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
37-91 |
8.77e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.86 E-value: 8.77e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2088337517 37 YLDKAYRAAEQRDWAQVQQLMEHLISQVPENVEAYRLLAQALAKQGNLDGAMAAL 91
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLL 61
|
|
| |
