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Conserved domains on  [gi|2087783425|ref|WP_222268646|]
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cytochrome c [Pseudooceanicola nitratireducens]

Protein Classification

c-type cytochrome( domain architecture ID 10440481)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; such as nitric oxide reductase subunit C

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  12594933|10647174|18568041|10395550|31252007|22723177
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 60-143 1.47e-17

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


:

Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 72.57  E-value: 1.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  60 QIGKRAFDGTCAACHGANGSGRIGYGPPLVHKVYEPGHHGDMAFYMAVQN-----GVRAHHWPFGDMPAQSGLTRADVSD 134
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAiggggVDRAGGPPGTGMPAFDGLTDEEIAD 80


                  ....*....
gi 2087783425 135 IIAYVREMQ 143
Cdd:pfam00034  81 LVAYLLSLS 89
 
Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 60-143 1.47e-17

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 72.57  E-value: 1.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  60 QIGKRAFDGTCAACHGANGSGRIGYGPPLVHKVYEPGHHGDMAFYMAVQN-----GVRAHHWPFGDMPAQSGLTRADVSD 134
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAiggggVDRAGGPPGTGMPAFDGLTDEEIAD 80


                  ....*....
gi 2087783425 135 IIAYVREMQ 143
Cdd:pfam00034  81 LVAYLLSLS 89
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
52-143 9.69e-14

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 64.59  E-value: 9.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  52 PAELSGPAQIGKRAFDGTCAACHGANGSGRIGYGPPLVHKvyEPGHHGDMAFYMAVQNGVRAhhwpfGDMPAQSG-LTRA 130
Cdd:COG2010    82 PAADAEALARGKALYEQNCAACHGADGKGGLGAAPNLTDD--ALYGGDPEALVETILNGRPG-----GAMPAFGGqLSDE 154

                          90
                  ....*....|...
gi 2087783425 131 DVSDIIAYVREMQ 143
Cdd:COG2010   155 EIAALAAYLRSLS 167
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 62-145 9.52e-07

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 46.74  E-value: 9.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  62 GKRAFDGTCAACHGANGSGRIGYGPPLVHKVYEPghhgDMAFYMAVQNGVRAHHWP-FGDmpaqsGLTRADVSDIIAYVR 140
Cdd:PRK14486  218 GKALYDANCAACHGDEAQGQEGVALNDIDDGDLP----DAAYFGMIKGGSDAKGMPgFGG-----DLSDDDIWAIVAYIR 288


                  ....*
gi 2087783425 141 EMQRA 145
Cdd:PRK14486  289 SQKAH 293
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 52-142 1.33e-05

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 43.34  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  52 PAELSGPAQIGKRAFDGTCAACHGANGSGRIGYgPPLVHKVYEPGhhGDMA-FYMAVQNGVRAHHWP---FGDMPAQSG- 126
Cdd:TIGR00782 100 PELKQYARNAGAAIFRTWCAQCHGSGAGGAKGF-PNLLDNDWLWG--GTLEgIHTTIKHGIRDPDDGdtyVGEMPAFGPl 176

                          90
                  ....*....|....*.
gi 2087783425 127 LTRADVSDIIAYVREM 142
Cdd:TIGR00782 177 LEEADIKDVASYVMSL 192
 
Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 60-143 1.47e-17

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 72.57  E-value: 1.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  60 QIGKRAFDGTCAACHGANGSGRIGYGPPLVHKVYEPGHHGDMAFYMAVQN-----GVRAHHWPFGDMPAQSGLTRADVSD 134
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAiggggVDRAGGPPGTGMPAFDGLTDEEIAD 80


                  ....*....
gi 2087783425 135 IIAYVREMQ 143
Cdd:pfam00034  81 LVAYLLSLS 89
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
52-143 9.69e-14

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 64.59  E-value: 9.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  52 PAELSGPAQIGKRAFDGTCAACHGANGSGRIGYGPPLVHKvyEPGHHGDMAFYMAVQNGVRAhhwpfGDMPAQSG-LTRA 130
Cdd:COG2010    82 PAADAEALARGKALYEQNCAACHGADGKGGLGAAPNLTDD--ALYGGDPEALVETILNGRPG-----GAMPAFGGqLSDE 154

                          90
                  ....*....|...
gi 2087783425 131 DVSDIIAYVREMQ 143
Cdd:COG2010   155 EIAALAAYLRSLS 167
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
53-147 1.96e-10

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 54.35  E-value: 1.96e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  53 AELSGPAQIGKrAFDGTCAACHGANGSGRIGYG-PPLVHKvyepgHHGDMAFYM-AVQNGVRAHhwpfGDMPAQ-SGLTR 129
Cdd:COG2863     9 PAAAGDAARGK-AYAAACAACHGADGEGNPGGGaPRLAGQ-----HAEYLVAQLkAFRSGARKN----GVMPAIaKGLSD 78

                          90
                  ....*....|....*...
gi 2087783425 130 ADVSDIIAYVREMQRANG 147
Cdd:COG2863    79 EDIKALAAYIASLKAPPG 96
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 62-144 2.86e-10

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 56.02  E-value: 2.86e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  62 GKRAFDGTCAACHGANGSGR-----IGYGPPLVHkvyePGHHGDMAFYMAVQNGVRAHHwpFGDMPAQSG--LTRADVSD 134
Cdd:COG3258   120 GKALYAERCASCHGADGEGQgradgQYGFPPLWG----GDSYNDGAGMARLGTLADFIK--GRNMPLGKPgsLSDDEAWD 193

                          90
                  ....*....|
gi 2087783425 135 IIAYVREMQR 144
Cdd:COG3258   194 VAAYVRSLPR 203
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
57-139 6.06e-07

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 44.32  E-value: 6.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  57 GPAQIGKRAFDGTCAACHGANGSgrigyGPPLVHKVYEPGhhgdmAFYMAVQNGVRAhhwpfgdMPAQSG-LTRADVSDI 135
Cdd:pfam13442   1 AAAAAGEALYAANCASCHGTGGA-----GPSLAGRALPPE-----ALVDIIRNGKGA-------MPAFGGdLSDEELEAL 63


                  ....
gi 2087783425 136 IAYV 139
Cdd:pfam13442  64 AAYL 67
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 62-145 9.52e-07

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 46.74  E-value: 9.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  62 GKRAFDGTCAACHGANGSGRIGYGPPLVHKVYEPghhgDMAFYMAVQNGVRAHHWP-FGDmpaqsGLTRADVSDIIAYVR 140
Cdd:PRK14486  218 GKALYDANCAACHGDEAQGQEGVALNDIDDGDLP----DAAYFGMIKGGSDAKGMPgFGG-----DLSDDDIWAIVAYIR 288


                  ....*
gi 2087783425 141 EMQRA 145
Cdd:PRK14486  289 SQKAH 293
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 52-142 1.33e-05

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 43.34  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  52 PAELSGPAQIGKRAFDGTCAACHGANGSGRIGYgPPLVHKVYEPGhhGDMA-FYMAVQNGVRAHHWP---FGDMPAQSG- 126
Cdd:TIGR00782 100 PELKQYARNAGAAIFRTWCAQCHGSGAGGAKGF-PNLLDNDWLWG--GTLEgIHTTIKHGIRDPDDGdtyVGEMPAFGPl 176

                          90
                  ....*....|....*.
gi 2087783425 127 LTRADVSDIIAYVREM 142
Cdd:TIGR00782 177 LEEADIKDVASYVMSL 192
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
57-142 3.56e-05

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 40.25  E-value: 3.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  57 GPAQIGKRAFDGTCAACHGANGSGRIGYGPPLvHKVY--EPGHHGDMAFYMAVQN-GVR-------------AHHWPFGD 120
Cdd:COG3474     1 GDAAAGEKLFNRKCAACHSVDGGAGNRVGPNL-NGVVgrKAGSVEGFAYSDALKAsGLVwdeetldawladpKAFVPGTK 79

                          90       100
                  ....*....|....*....|...
gi 2087783425 121 MPAQsGLTRA-DVSDIIAYVREM 142
Cdd:COG3474    80 MPFA-GLKDPeDRADLIAYLKTL 101
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 59-139 5.90e-04

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 38.72  E-value: 5.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  59 AQIGKRAFDGTCAACHGANGSGRIGYGPP-LVHKVYEPGhhGDMA-FYMAVQNGvrahhwPFGDMPAQSG-LTRADVSDI 135
Cdd:TIGR00782 203 AAKGQELFADNCTTCHGEDGKGLQELGAPnLTDDVWLYG--GDLKtITTTITNG------RGGVMPAWGPrLSEAQIKAL 274


                  ....
gi 2087783425 136 IAYV 139
Cdd:TIGR00782 275 AAYV 278
PTZ00048 PTZ00048
cytochrome c; Provisional
 48-88 2.55e-03

cytochrome c; Provisional


Pssm-ID: 185414  Cd Length: 115  Bit Score: 35.60  E-value: 2.55e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2087783425  48 EVTLPaelSGPAQIGKRAFDGTCAACHGANGSGRIGYGPPL 88
Cdd:PTZ00048    7 DVTVP---EGDAKKGAKLFKAKCAQCHTINKGGAVKQGPNL 44
CytC5 COG3245
Cytochrome c5 [Energy production and conversion];
50-138 4.35e-03

Cytochrome c5 [Energy production and conversion];


Pssm-ID: 442476 [Multi-domain]  Cd Length: 108  Bit Score: 35.04  E-value: 4.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  50 TLPAELSGPAQIGKRAFDGTCAACHGANGSG------------RIGYGPPLVHKvyepghhgdmafymAVQNGvrahhwp 117
Cdd:COG3245    23 LAAAAAAAAARSGEAVYNATCAACHATGVAGapklgdkaawapRIAKGMDTLLK--------------HAING------- 81

                          90       100
                  ....*....|....*....|....
gi 2087783425 118 FGDMPAQSG---LTRADVSDIIAY 138
Cdd:COG3245    82 FNAMPPKGGcadLSDDEVKAAVDY 105
PRK13697 PRK13697
cytochrome c6; Provisional
 50-141 4.49e-03

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 34.76  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2087783425  50 TLPAeLSGPAQIGKRAFDGTCAACHgANGSGRIGYGPPLVHKVYEP-GHHGDMAFYMAVQNGVrahhwpfGDMPA-QSGL 127
Cdd:PRK13697   20 SSPA-LAADAANGEQVFSANCASCH-AGGKNLVNAGKTLKKADLEKyGMYSLEAITAQVTNGK-------NAMPAfKDRL 90

                          90
                  ....*....|....
gi 2087783425 128 TRADVSDIIAYVRE 141
Cdd:PRK13697   91 SPDQIEDVAAYVLE 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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