|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10503 |
PRK10503 |
MdtB/MuxB family multidrug efflux RND transporter permease subunit; |
1-1040 |
0e+00 |
|
MdtB/MuxB family multidrug efflux RND transporter permease subunit;
Pssm-ID: 182501 [Multi-domain] Cd Length: 1040 Bit Score: 2023.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 1 MQVMPPGSTGGPSRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQF 80
Cdd:PRK10503 1 MQVLPPSSTGGPSRLFILRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 81 GQMSGLKQMSSQSSGGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSSAMPM 160
Cdd:PRK10503 81 GQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 161 TQVEDMVETRVAQKISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPTRAVTLSA 240
Cdd:PRK10503 161 TQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPTRAVTLSA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 241 NDQMQSADEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESL 320
Cdd:PRK10503 241 NDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIATADSIRQMLPQLTESL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 321 PKSVSVKVLSDRTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMA 400
Cdd:PRK10503 321 PKSVKVTVLSDRTTNIRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 401 LTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAI 480
Cdd:PRK10503 401 LTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAI 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 481 LISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWIFIPKG 560
Cdd:PRK10503 481 LISAVVSLTLTPMMCARMLSQESLRKQNRFSRASERMFDRVIAAYGRGLAKVLNHPWLTLSVALSTLLLTVLLWIFIPKG 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 561 FFPIQDNGIIQGTLQAPQSVSFANMAQRQQQVSEIIMKDPAVESLTAYVGVDGTNPSLNSARLQINLKPLDDRDDRVNAV 640
Cdd:PRK10503 561 FFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 641 IERLQNAVARVPGVELYLQPIQDLTIDTQVSRTQYQFTLQATTLDALSTWVPQLVDKLKALPQLSDVSSDWQDKGLAAYV 720
Cdd:PRK10503 641 IARLQTAVAKVPGVDLYLQPTQDLTIDTQVSRTQYQFTLQATSLDALSTWVPKLMEKLQQLPQLSDVSSDWQDKGLVAYV 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 721 NVNRDTASRLGITMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTDNTPGLAALDSVRLTSKDGGIVPLSAIASVEE 800
Cdd:PRK10503 721 NVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIATIEQ 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 801 RYTPLSINHLDQFPSTTISFNVPDGYSLGEAVESILSAEKELSFPSDIQTQFQGSTLAFQAALGNTVWLIVAAVVAMYIV 880
Cdd:PRK10503 801 RFGPLSINHLDQFPSTTISFNVPDGYSLGDAVQAIMDTEKTLNLPADITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIV 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 881 LGVLYESFIHPITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIFQA 960
Cdd:PRK10503 881 LGVLYESFIHPITILSTLPTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQA 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 961 CLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFDRLALWAKSRFPKREEEA 1040
Cdd:PRK10503 961 CLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLLFDRLALYTKSRFPRHEEEA 1040
|
|
| RND_permease_2 |
NF033617 |
multidrug efflux RND transporter permease subunit; |
13-1024 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 411236 [Multi-domain] Cd Length: 1009 Bit Score: 1390.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 13 SRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQ 92
Cdd:NF033617 1 SDVFIKRPVATLLLSLLILLLGLLAFRKLPVREYPEVDFPTITVSTSYPGASPELMQSSITQPLEQQLAQIEGIDEMTSQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 93 SSGGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSSAMPMTQVEDMVETRVA 172
Cdd:NF033617 81 SSLGYSTITLQFRLGTDLDVALSEVQAAINAAQSLLPSEAPDPPVYRKANSADTPIMYIGLTSEEMPRGQLTDYAERVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 173 QKISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPTRAVTLSANDQMQSADEYRQ 252
Cdd:NF033617 161 PKLSQINGVGSVDVSGGQRPAMRVWLDPEKMAARGLTADDVRSALNSNNVNSPKGAVRGDSVVSTVRANDQLKTAEDYED 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 253 LIIAYQ-NGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPKSVSVKVLSD 331
Cdd:NF033617 241 LVIKYAdNGAPVRLGDVATVELGAENVRNRAWANGVPAVVLGINRQPGANPIEVADEIRALLPELQETLPKNIKVNVLYD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 332 RTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDD 411
Cdd:NF033617 321 RTRFIRASIDEVESTLLEAVALVILVVFLFLRNLRATLIPAVTVPLSLIGTFAVMYLFGFSINLLTLMALVLAIGLVVDD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 412 AIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLT 491
Cdd:NF033617 401 AIVVVENIHRHIEEGESPLEAALKGAREIGFTVIAMTLTLVAVYLPILFMGGLTGRLFREFAVTLAGAVIISGIVALTLT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 492 PMMCARMLSHESlrKQNRFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWIFIPKGFFPIQDNGIIQ 571
Cdd:NF033617 481 PMMCSRLLKANE--KPGRFARAVDRFFDGLTARYGRGLKWVLKHRPLTLVVALATLALLPLLYVFIPKELAPSEDRGVIF 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 572 GTLQAPQSVSFANMAQRQQQVSEIIMKDPAVESLTAYVGVdGTNPSLNSARLQINLKPLDDRDDRVNAVIERLQNAVARV 651
Cdd:NF033617 559 GMIQAPQSISLDYMSAKMRDVEKILSSDPEVQSLTSFNGV-GGNPGDNTGFGIINLKPWDERDVSAQEIIDRLRPKLAKV 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 652 PGVELYLQPIQDLTIDTQVSRTQYQFTLQATTLDALSTWVPQLVDKLKALPQLSDVSSDWQDKGLAAYVNVNRDTASRLG 731
Cdd:NF033617 638 PGMDLFLFPLQDLPGGAGSSLPQYQVTLTPSDYDSLFTWAEKLKEKLRKSPQFADVDSDLQDKGPELNVDIDRDKAARLG 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 732 ITMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTDNTPGLAALDSVRLTSKDGGIVPLSAIASVEERYTPLSINHLD 811
Cdd:NF033617 718 ISMQDIGSTLEVAFGQRQVNTIYTDGNQYKVVLEVDRRYRLNPEALNQIYVRSNDGKLVPLSTLAKIEERAAPLSLNHFN 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 812 QFPSTTISFNVPDGYSLGEAVESILSAEKELsFPSDIQTQFQGSTLAFQAALGNTVWLIVAAVVAMYIVLGVLYESFIHP 891
Cdd:NF033617 798 QFNSATLSFNLAPGVSLGEAIEALDQAAKEL-LPSGISGSFQGAARAFQEEGSSLLFLFLLALAAIYLVLAIQYESFVDP 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 892 ITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIFQACLLRFRPILMT 971
Cdd:NF033617 877 LTILSTVPLAGCGALLALALGGQSMNIYAQIGLITLIGLVKKNGILMVEFANELQRHQGLSRREAIYQAAALRLRPILMT 956
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|...
gi 2084886474 972 TLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFDR 1024
Cdd:NF033617 957 TLAMLLGAIPLMLSTGAGAESRFPLGIVIVGGLGVGTLFTLFVLPVVYLLLAR 1009
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
12-1023 |
0e+00 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 1157.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 12 PSRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSS 91
Cdd:pfam00873 1 MSKFFIRRPIFTLVLAIAILLAGILSFFSLPVDAFPEIAPPTVQVSTSYPGASPEEVEDTVTQPIEQAMNGLDGLKYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 92 QSSGGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLpNPPVYSKVNPADPPIMTLAVTSS--AMPMTQVEDMVET 169
Cdd:pfam00873 81 QSSYGLSSITLTFELGTDIDIARQDVQNRLQLATPLLPEGV-QRPGISVIKTSLGPIMVLAVTSPdgSYTQTDLRDYADT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 170 RVAQKISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPTRAVTLSANDQMQSADE 249
Cdd:pfam00873 160 NIKPQLSRVPGVGDVQLFGGSEYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQLEGQGLQALIRAQGQLQSAED 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 250 YRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPKSVSVKVL 329
Cdd:pfam00873 240 FEKIIVKNQDGSPVRLRDVATVELGSELYRGFATFNGKPAVGLGVQKLPGANAIETADAVRAKLAELKPTFPQGVEIVVV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 330 SDRTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVV 409
Cdd:pfam00873 320 YDTTPFIRASIEEVVKTLLEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 410 DDAIVVIENISRYI-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSL 488
Cdd:pfam00873 400 DDAIVVVENIERVLeENGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGGLTGRIFRQFAITIVLAILLSVLVAL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 489 TLTPMMCARMLSHESLRKQNRFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWIFIPKGFFPIQDNG 568
Cdd:pfam00873 480 TLTPALCATLLKPRREPKHGGFFRWFNRMFDRLTRGYAKLLAKVLRHTAVVLLVALLLVVGSVWLFVRIPTEFLPEEDEG 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 569 IIQGTLQAPQSVSFANMAQRQQQVSEIIMKDPAVESLTAYVGV--DGTNPSLNSARLQINLKPLDDR---DDRVNAVIER 643
Cdd:pfam00873 560 VFVTSAQLPPGVSLDQTQRVMKQVEKILKEKPEVESVFAVTGFafSGDNNGPNSGDAFISLKPWKERpgpEKSVQALIER 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 644 LQNAVARVPGVELYLQPIQDLTID--TQVSRTQYQFTLQATTLDALSTWVPQLVDKLKALPQLSDVSSDWQDKGLAAYVN 721
Cdd:pfam00873 640 LRKALKQIPGANVFLFQPIQLRGLgtISGFRSDLQVKIFGDDLDALDEARNQILAALAQLPGLSDVRSDGQEDQPQLQVN 719
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 722 VNRDTASRLGITMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTDNTPGLAALDSVRLTSKDGGIVPLSAIASVEER 801
Cdd:pfam00873 720 IDREKAARLGVSIQDINDTLSTALGGSYVNDFPEGGRVYDVVVQLPEDFRSSPEDIGQLYVRNPYGKMIPLSAFAKIEWG 799
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 802 YTPLSINHLDQFPSTTISFNVPDGYSLGEAVESILSAEKELSFPSDIQTQFQGSTLAFQAALGNTVWLIVAAVVAMYIVL 881
Cdd:pfam00873 800 YGPPSINRYNGFRSIVISGNVAAGDSLGDAMEAMAQIAKQVKLPPGYGYTWTGQFEQEQLAGNSLPILIALALLVVFLVL 879
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 882 GVLYESFIHPITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIFQAC 961
Cdd:pfam00873 880 AALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLILLIGLAVKNAILMVEFANELREQEGKSLEEAILEAC 959
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2084886474 962 LLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFD 1023
Cdd:pfam00873 960 RLRLRPILMTALAAILGVLPLALSTGAGSELQQPLGIVVFGGLVTSTVLTLLVVPVFYVLFH 1021
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
13-1028 |
0e+00 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 1143.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 13 SRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQ 92
Cdd:COG0841 4 SRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYITST 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 93 SSGGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLpNPPVYSKVNPADPPIMTLAVTSSAMPMTQVEDMVETRVA 172
Cdd:COG0841 84 SSEGSSSITVEFELGTDIDEALVDVQNAVDRARSDLPEDV-EPPGVTKVNPSDFPVMVLALSSDDLDELELSDYAERNIK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 173 QKISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPTRAVTLSANDQMQSADEYRQ 252
Cdd:COG0841 163 DRLERVPGVGQVQIFGGREREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGGGDREYTVRTNGRLKTPEEFEN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 253 LIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPKSVSVKVLSDR 332
Cdd:COG0841 243 IVIRTNDGSVVRLGDVARVEDGAEDYRSIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASLPEGVELTIVYDQ 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 333 TTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDA 412
Cdd:COG0841 323 SEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFALVLAIGIVVDDA 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 413 IVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTP 492
Cdd:COG0841 403 IVVVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIALLISLFVALTLTP 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 493 MMCARMLSHESLRKQNRFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWIFIPKGFFPIQDNGIIQG 572
Cdd:COG0841 483 ALCARLLKPHPKGKKGRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLALSVLLFGRLPTEFFPEEDQGQIIV 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 573 TLQAPQSVSFANMAQRQQQVSEIIMKDPAVESLTAYVGVDGTNPSLNSARLQINLKPLDDRDDRVNAVIERLQNAVARVP 652
Cdd:COG0841 563 SVQLPPGTSLERTEAVVRQVEEILLEVPEVESVFSVVGFSGGGSGSNSGTIFVTLKPWDERDRSADEIIARLREKLAKIP 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 653 GVELYLQPIQDltiDTQVSRTQYQFTLQATTLDALSTWVPQLVDKLKALPQLSDVSSDWQDKGLAAYVNVNRDTASRLGI 732
Cdd:COG0841 643 GARVFVFQPPA---GGLGSGAPIEVQLQGDDLEELAAAAEKLLAALRQIPGLVDVRSDLQLGKPELQLDIDREKAAALGV 719
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 733 TMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTDNTPGLAALDSVRLTSKDGGIVPLSAIASVEERYTPLSINHLDQ 812
Cdd:COG0841 720 TVADVASTLRAALGGRYVNDFNRGGREYDVRVQAPEEDRNSPEDLENLYVRTPDGEMVPLSSVATIEEGTGPSSINRYNG 799
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 813 FPSTTISFNVPDGYSLGEAVESILSAEKELSFPSDIQTQFQGSTLAFQAALGNTVWLIVAAVVAMYIVLGVLYESFIHPI 892
Cdd:COG0841 800 QRSVTVSANLAPGVSLGEALAAIEELAAELKLPPGVSIEFTGQAEEEQESFSSLGLAFLLALLLVYLVLAAQFESFIQPL 879
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 893 TILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFALaAEREQGMSPRDAIFQACLLRFRPILMTT 972
Cdd:COG0841 880 IILLTVPLALIGALLGLLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFAN-QLREEGMSLREAILEAARLRLRPILMTS 958
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*.
gi 2084886474 973 LAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFDRLALW 1028
Cdd:COG0841 959 LATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDRLRRR 1014
|
|
| PRK10614 |
PRK10614 |
multidrug efflux system subunit MdtC; Provisional |
15-1025 |
0e+00 |
|
multidrug efflux system subunit MdtC; Provisional
Pssm-ID: 182589 [Multi-domain] Cd Length: 1025 Bit Score: 1075.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 15 LFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQSS 94
Cdd:PRK10614 6 LFIYRPVATILLSLAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 95 GGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSSAMPMTQVEDMVETRVAQK 174
Cdd:PRK10614 86 LGSTRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFASTQLAQT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 175 ISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPTRAVTLSANDQMQSADEYRQLI 254
Cdd:PRK10614 166 ISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRQAISNANVRRPQGAVEDGTHRWQIQTNDELKTAAEYQPLI 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 255 IAYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPKSVSVKVLSDRTT 334
Cdd:PRK10614 246 IHYNNGAAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDRIRAKLPELRETIPAAIDLQIAQDRSP 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 335 NIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIV 414
Cdd:PRK10614 326 TIRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIV 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 415 VIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMM 494
Cdd:PRK10614 406 VLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTLTPMM 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 495 CARMLSHESLRKQNRfSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWIFIPKGFFPIQDNGIIQGTL 574
Cdd:PRK10614 486 CAWLLKSSKPREQKR-LRGFGRMLVALQQGYGRSLKWVLNHTRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFI 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 575 QAPQSVSFANMAQRQQQVSEIIMKDPAVESLTAYVGVDGTnpslNSARLQINLKPLDDRDDRVNAVIERLQNAVARVPGV 654
Cdd:PRK10614 565 QADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRV----NSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGA 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 655 ELYLQPIQDLTIDTQVSRTQYQFTLQATTLDALSTWVPQLVDKLKALPQLSDVSSDWQDKGLAAYVNVNRDTASRLGITM 734
Cdd:PRK10614 641 NLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDV 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 735 SDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTDNTPGLAALDSVRLTSKDGGIVPLSAIASVEERYTPLSINHLDQFP 814
Cdd:PRK10614 721 QAANSLLNNAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSA 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 815 STTISFNVPDGYSLGEAVESILSAEKELSFPSDIQTQFQGSTLAFQAALGNTVWLIVAAVVAMYIVLGVLYESFIHPITI 894
Cdd:PRK10614 801 ASTISFNLPTGKSLSDASAAIERAMTQLGVPSTVRGSFAGTAQVFQETMNSQLILILAAIATVYIVLGILYESYVHPLTI 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 895 LSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIFQACLLRFRPILMTTLA 974
Cdd:PRK10614 881 LSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTTLA 960
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|.
gi 2084886474 975 ALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFDRL 1025
Cdd:PRK10614 961 ALFGALPLVLSGGDGAELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRL 1011
|
|
| 2A0602 |
TIGR00915 |
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ... |
13-1025 |
4.49e-176 |
|
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 273335 [Multi-domain] Cd Length: 1044 Bit Score: 542.01 E-value: 4.49e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 13 SRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQ 92
Cdd:TIGR00915 2 AKFFIDRPIFAWVIAIIIMLAGTLSILSLPVSQYPSIAPPAITVSASYPGASAQTVQDTVTQVIEQNMNGIDGLRYMSSS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 93 SSG-GASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLPNPPVysKVNPA-DPPIMTLAVTSSAMPMTQVE--DMVE 168
Cdd:TIGR00915 82 SDSdGSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGV--RVEKAsSNFLMVIGLVSDDGSMTKEDlsDYAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 169 TRVAQKISQVSGVGLVTLAGGQRpAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSL------DGPTRAVTLSAND 242
Cdd:TIGR00915 160 SNMVDPLSRLEGVGDVQLFGSQY-AMRIWLDPAKLNSYQLTPADVISAISAQNAQISAGQLgglpavPGQQLNATIIAQT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 243 QMQSADEYRQLII-AYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLP 321
Cdd:TIGR00915 239 RLQTPEQFENILLkVNTDGSQVRLKDVARVELGGENYSISARFNGKPASGLAIKLATGANALDTAKAVKAELAVLEPFFP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 322 KSVSVKVLSDRTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401
Cdd:TIGR00915 319 QGMKYVYPYDTTPFVEASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAM 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 402 TIATGFVVDDAIVVIENISRYI-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAI 480
Cdd:TIGR00915 399 VLAIGLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAM 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 481 LISAVVSLTLTPMMCARML------SHESLRKqnRFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLW 554
Cdd:TIGR00915 479 ALSVLVALILTPALCATMLkpiekgEHHEKKG--GFFGWFNRMFDSSTHGYENGVGKILRRRGRYLLVYVLLVGGMVFLF 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 555 IFIPKGFFPIQDNGIIQGTLQAPQSVSFANMAQRQQQVSEIIMKDPA--VESLTAYVGVDGTNPSLNSARLQINLKPLDD 632
Cdd:TIGR00915 557 VRLPTSFLPDEDQGVFMTIVQLPAGATAERTQAVLAQVTKYLLAKEKanVESVFTVNGFSFAGRGQNMGMAFIRLKDWEE 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 633 RD---DRVNAVIERLQNAVARVP---GVELYLQPIQDLTidtqvSRTQYQFTLQA---TTLDALSTWVPQLVDKLKALPQ 703
Cdd:TIGR00915 637 RTgkeNSVFAIAGRATGHFMQIKdamVIAFVPPAILELG-----NATGFDFFLQDragLGHEALLQARNQLLGLAAQNPA 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 704 LSDVSSDWQDKGLAAYVNVNRDTASRLGITMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTDNTPGLAALDSVRLT 783
Cdd:TIGR00915 712 LTRVRPNGLEDEPQLKIDIDREKAQALGVSIADINTTLSTAWGSSYVNDFIDRGRVKRVYVQAEEDARMSPEDINKWYVR 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 784 SKDGGIVPLSAIASVEERYTPLSINHLDQFPSTTISFNVPDGYSLGEAVESILSAEKELsfPSDIQTQFQGSTLAFQAAL 863
Cdd:TIGR00915 792 NASGEMVPFSAFATVRWEYGSPQLERYNGLPSMEILGSAAPGVSTGQAMAAMEAIAQKL--PPGFGFSWTGMSYEERLSG 869
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 864 GNTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFAl 943
Cdd:TIGR00915 870 SQAPALYALSLLVVFLCLAALYESWSIPVSVMLVVPLGIIGALLATTLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFA- 948
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 944 AAEREQGMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFD 1023
Cdd:TIGR00915 949 KELMAQGKSIVEAALEAARLRLRPILMTSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVR 1028
|
..
gi 2084886474 1024 RL 1025
Cdd:TIGR00915 1029 RL 1030
|
|
| CusA |
COG3696 |
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism]; |
14-1024 |
4.38e-147 |
|
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];
Pssm-ID: 442911 [Multi-domain] Cd Length: 1031 Bit Score: 465.27 E-value: 4.38e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 14 RLFILrpvattLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQS 93
Cdd:COG3696 13 RLLVL------LLTLLLAAAGIYSLRRLPIDAFPDITNVQVQVITEAPGLSPEEVEQQVTYPIETALNGLPGVKEVRSIS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 94 SGGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDlpnppvyskVNPA-DPP------IMTLAVTSSAMPMTQVE-- 164
Cdd:COG3696 87 RFGLSVVTVIFEDGTDIYWARQLVLERLQQVREQLPAG---------VTPElGPIstglgeIYQYTLESDPGKYSLMElr 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 165 DMVETRVAQKISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPTRAVTLSANDQM 244
Cdd:COG3696 158 TLQDWVIRPQLRSVPGVAEVNSFGGFVKQYQVLVDPAKLRAYGLTLDDVIEALERNNANVGGGYIERGGQEYLVRGIGLI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 245 QSADEYRQLIIAYQNGAPIRLGDVATVEQGAENSwLGA--WANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPK 322
Cdd:COG3696 238 RSLEDIENIVVKTRNGTPVLLRDVAEVRIGPAPR-RGAatLNGEGEVVGGIVLMLKGENALEVIEAVKAKLAELKPSLPE 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 323 SVSVKVLSDRTTNIRASVtDTQFE-LMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401
Cdd:COG3696 317 GVKIVPFYDRSDLIDRAI-HTVTKnLLEGALLVILVLFLFLGNLRAALIVALAIPLSLLFAFIVMRLFGISANLMSLGGL 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 402 TIATGFVVDDAIVVIENISRYIEK------GEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVT 475
Cdd:COG3696 396 AIDFGIIVDGAVVMVENILRRLEEnraagtPRERLEVVLEAAREVRRPIFFATLIIILVFLPIFTLEGVEGKLFRPMALT 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 476 LAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRasermfeRIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWI 555
Cdd:COG3696 476 VIFALLGALLLSLTLVPVLASLLLRGKVPEKENPLVR-------WLKRLYRPLLRWALRHPKLVLAVALVLLVLALALFP 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 556 FIPKGFFPIQDNG--IIQGTLqaPQSVSFANMAQRQQQVSEIIMKDPAVESLTAYVGV--DGTNP-SLNSARLQINLKPL 630
Cdd:COG3696 549 RLGSEFLPELDEGdlLVMATL--PPGISLEESVELGQQVERILKSFPEVESVVSRTGRaeDATDPmGVNMSETFVILKPR 626
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 631 DDRDDRVN--AVIERLQNAVARVPGVEL-YLQPIQDlTIDTQVS--RTQYQFTLQATTLDALSTWVPQLVDKLKALPQLS 705
Cdd:COG3696 627 SEWRSGRTkeELIAEMREALEQIPGVNFnFSQPIQM-RVDELLSgvRADVAVKIFGDDLDVLRRLAEQIEAVLKTVPGAA 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 706 DVSSDwQDKGLAAY-VNVNRDTASRLGITMSDVDNALYNAFGQRLISTIYTQANQYRVVL---EHNTDNtpgLAALDSVR 781
Cdd:COG3696 706 DVQVE-RVTGLPQLdIRIDRDAAARYGLNVADVQDVVETAIGGKAVGQVYEGERRFDIVVrlpEELRDD---PEAIRNLP 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 782 LTSKDGGIVPLSAIASVEERYTPLSINHLDQFPSTTISFNVpDGYSLGEAVESILSA-EKELSFPSDIQTQFQGSTLAFQ 860
Cdd:COG3696 782 IPTPSGAQVPLSQVADIEVVEGPNQISRENGRRRIVVQANV-RGRDLGSFVAEAQAKvAEQVKLPPGYYIEWGGQFENLQ 860
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 861 AALGNTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLAGSEL--------------DVIaiigiil 926
Cdd:COG3696 861 RATARLAIVVPLALLLIFLLLYLAFGSVRDALLILLNVPFALIGGVLALWLRGMPLsvsagvgfialfgvAVL------- 933
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 927 ligivkkNAIMMIDFALAAeREQGMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLV 1006
Cdd:COG3696 934 -------NGVVLVSYINQL-RAEGLDLREAIIEGALERLRPVLMTALVAALGLLPMALSTGPGSEVQRPLATVVIGGLIT 1005
|
1050
....*....|....*...
gi 2084886474 1007 SQVLTLFTTPVIYLLFDR 1024
Cdd:COG3696 1006 STLLTLLVLPALYLLFGR 1023
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
15-1024 |
2.08e-138 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 442.35 E-value: 2.08e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 15 LFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQSS 94
Cdd:PRK09579 6 PFIRRPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 95 GGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLPNPpVYSKVNPADPPIMTLAVTSSAMPMTQVEDMVETRVAQK 174
Cdd:PRK09579 86 QNFSIISIYARIGADSDRLFTELLAKANEVKNQLPQDAEDP-VLSKEAADASALMYISFYSEEMSNPQITDYLSRVIQPK 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 175 ISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPTRAVTLSANDQMQSADEYRQLI 254
Cdd:PRK09579 165 LATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRRYNFLSAAGEVKGEYVVTSINASTELKSAEAFAAIP 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 255 IAYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPKSVSVKVLSDRTT 334
Cdd:PRK09579 245 VKTSGDSRVLLGDVARVEMGAENYDSISSFDGIPSVYIGIKATPSANPLDVIKEVRAIMPELESQLPPNLKVSIAYDATL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 335 NIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIV 414
Cdd:PRK09579 325 FIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDAIV 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 415 VIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMM 494
Cdd:PRK09579 405 VVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMM 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 495 CARMLSHEslRKQNRFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWIFIPKGFFPIQDNGIIQGTL 574
Cdd:PRK09579 485 CALLLRHE--ENPSGLAHRLDRLFERLKQRYQRALHGTLNTRPVVLVFAVIVLALIPVLLKFTQSELAPEEDQGIIFMMS 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 575 QAPQSVSFANMAQRQQQVSEIIMKDPAVESLTAYVGVDGTNPSLNSarlqINLKPLDDRDDRVNAVIERLQNAVARVPGV 654
Cdd:PRK09579 563 SSPQPANLDYLNAYTDEFTPIFKSFPEYYSSFQINGFNGVQSGIGG----FLLKPWNERERTQMELLPLVQAKLEEIPGL 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 655 ELYLQPIQDLTIDTQvsRTQYQFTLQ-ATTLDALSTWVPQLVDKLKALPQLSDVSSDWQDKGLAAYVNVNRDTASRLGIT 733
Cdd:PRK09579 639 QIFGFNLPSLPGTGE--GLPFQFVINtANDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVS 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 734 MSDVDNALYNAFGQRLISTIYTQANQYRVV--LEHNTDNTPGLaaLDSVRLTSKDGGIVPLSAIASVEERYTPLSINHLD 811
Cdd:PRK09579 717 MQDLGGTLATLLGEGEINRFTIDGRSYKVIaqVERPYRDNPGW--LNNYYVKNEQGQLLPLSTLITLSDRARPRQLNQFQ 794
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 812 QFPSTTISfNVPDgYSLGEAVESILSAEKELSfPSDIQTQFQGSTLAFQAAlGNTVWLIVAAVVAM-YIVLGVLYESFIH 890
Cdd:PRK09579 795 QLNSAIIS-GFPI-VSMGEAIETVQQIAREEA-PEGFAFDYAGASRQYVQE-GSALWVTFGLALAIiFLVLAAQFESFRD 870
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 891 PITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIFQACLLRFRPILM 970
Cdd:PRK09579 871 PLVILVTVPLSICGALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLM 950
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....
gi 2084886474 971 TTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFDR 1024
Cdd:PRK09579 951 TTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAK 1004
|
|
| PRK10555 |
PRK10555 |
multidrug efflux RND transporter permease AcrD; |
13-1037 |
1.38e-130 |
|
multidrug efflux RND transporter permease AcrD;
Pssm-ID: 182544 [Multi-domain] Cd Length: 1037 Bit Score: 421.93 E-value: 1.38e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 13 SRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQ 92
Cdd:PRK10555 2 ANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 93 SSG-GASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLPNPPVYSKvNPADPPIMTLAVTSS--AMPMTQVEDMVET 169
Cdd:PRK10555 82 SSGtGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVR-KTGDTNILTIAFVSTdgSMDKQDIADYVAS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 170 RVAQKISQVSGVGLVTLAGGQRpAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDG----PTRAV--TLSANDQ 243
Cdd:PRK10555 161 NIQDPLSRVNGVGDIDAYGSQY-SMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGtpsvDKQALnaTINAQSL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 244 MQSADEYRQLII-AYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPK 322
Cdd:PRK10555 240 LQTPEQFRDITLrVNQDGSEVTLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLNRLDELAQYFPH 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 323 SVSVKVLSDRTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALT 402
Cdd:PRK10555 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 403 IATGFVVDDAIVVIENISRYI-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAIL 481
Cdd:PRK10555 400 LAIGLLVDDAIVVVENVERIMsEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMV 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 482 ISAVVSLTLTPMMCARML---SHESLRKQNRFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWIFIP 558
Cdd:PRK10555 480 LSVLVAMILTPALCATLLkplKKGEHHGQKGFFGWFNRMFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLP 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 559 KGFFPIQDNGIIQGTLQAPQSVSFANMAQRQQQVSEIIMKDPA--VESLTAYVGVDGTNPSLNSARLQINLKPLDDRDDR 636
Cdd:PRK10555 560 TSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEKVEKYYFTHEKdnVMSVFATVGSGPGGNGQNVARMFIRLKDWDERDSK 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 637 VN---AVIERLQNAVARVPGVELYLQpiQDLTIDTQVSRTQYQFTLQ---ATTLDALSTWVPQLVDKLKALPQLSDVSSD 710
Cdd:PRK10555 640 TGtsfAIIERATKAFNKIKEARVIAS--SPPAISGLGSSAGFDMELQdhaGAGHDALMAARNQLLALAAKNPELTRVRHN 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 711 WQDKGLAAYVNVNRDTASRLGITMSDVDNALYNAFGQRLIS---------TIYTQAN-QYRVVlehntdntPGLAALDSV 780
Cdd:PRK10555 718 GLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNdfmdrgrvkKVYVQAAaPYRML--------PDDINLWYV 789
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 781 RltSKDGGIVPLSAIASVEERYTPLSINHLDQFPSTTISFNVPDGYSLGEAVESILSAEKELsfPSDIQTQFQGSTLAFQ 860
Cdd:PRK10555 790 R--NKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDIMESLVKQL--PNGFGLEWTAMSYQER 865
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 861 AALGNTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMID 940
Cdd:PRK10555 866 LSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVE 945
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 941 FAlAAEREQGMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYL 1020
Cdd:PRK10555 946 FA-NEMNQKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFV 1024
|
1050
....*....|....*..
gi 2084886474 1021 LFDRlalwaksRFPKRE 1037
Cdd:PRK10555 1025 LVRR-------RFPLKP 1034
|
|
| PRK09577 |
PRK09577 |
multidrug efflux RND transporter permease subunit; |
13-1025 |
5.80e-128 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169981 [Multi-domain] Cd Length: 1032 Bit Score: 414.63 E-value: 5.80e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 13 SRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQ 92
Cdd:PRK09577 2 ARFFIDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 93 SSGGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLPNPPVYSKvNPADPPIMTLAVTSSAMPMTQVE--DMVETR 170
Cdd:PRK09577 82 SSAGQASLSLTFKQGVNADLAAVEVQNRLKTVEARLPEPVRRDGIQVE-KAADNIQLIVSLTSDDGRLTGVElgEYASAN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 171 VAQKISQVSGVGLVTLAGGQRpAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSL------DGPTRAVTLSANDQM 244
Cdd:PRK09577 161 VLQALRRVEGVGKVQFWGAEY-AMRIWPDPVKLAALGLTASDIASAVRAHNARVTIGDIgrsavpDSAPIAATVFADAPL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 245 QSADEYRQLIIAYQ-NGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPKS 323
Cdd:PRK09577 240 KTPEDFGAIALRARaDGSALYLRDVARIEFGGNDYNYPSYVNGKTATGMGIKLAPGSNAVATEKRVRATMDELSRYFPPG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 324 VSVKVLSDRTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403
Cdd:PRK09577 320 VKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVL 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 404 ATGFVVDDAIVVIENISRYI-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILI 482
Cdd:PRK09577 400 AIGILVDDAIVVVENVERLMvEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGF 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 483 SAVVSLTLTPMMCARMLS-----HESLRKqnrFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWIFI 557
Cdd:PRK09577 480 SAFLALSLTPALCATLLKpvdgdHHEKRG---FFGWFNRFVARSTQRYATRVGAILKRPLRWLVVYGALTAAAALLFTRL 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 558 PKGFFPIQDNGIIQGTLQAPQSVSFANMAQRQQQVSEIIMKDPAVESLTAYVGVD--GTNPslNSARLQINLKPLDDR-- 633
Cdd:PRK09577 557 PTAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFALGGFNlyGEGP--NGGMIFVTLKDWKERka 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 634 -DDRVNAVIERLQNAVARVPGVELY---LQPIQDLTidtqvSRTQYQFTLQ---ATTLDALSTWVPQLVDKLKALPQLSD 706
Cdd:PRK09577 635 aRDHVQAIVARINERFAGTPNTTVFamnSPALPDLG-----STSGFDFRLQdrgGLGYAAFVAAREQLLAEGAKDPALTD 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 707 VSSDWQDKGLAAYVNVNRDTASRLGITMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTDNTPGLAALDSVRLTSKD 786
Cdd:PRK09577 710 LMFAGTQDAPQLKLDIDRAKASALGVSMDEINTTLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRLDPDDVKKLRVRNAQ 789
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 787 GGIVPLSAIASVEERYTPLSINHLDQFPSTTISFNVPDGYSLGEAVESILSAEKELsfPSDIQTQFQGSTLAFQAALGNT 866
Cdd:PRK09577 790 GEMVPLAAFATLHWTLGPPQLTRYNGYPSFTINGSAAPGHSSGEAMAAIERIAATL--PAGIGYAWSGQSFEERLSGAQA 867
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 867 VWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFA--LA 944
Cdd:PRK09577 868 PMLFALSVLVVFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAkdLV 947
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 945 AereQGMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFDR 1024
Cdd:PRK09577 948 A---QRMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQIAIGTGVLGGVITATVLAVFLVPLFFVVVGR 1024
|
.
gi 2084886474 1025 L 1025
Cdd:PRK09577 1025 L 1025
|
|
| PRK15127 |
PRK15127 |
multidrug efflux RND transporter permease subunit AcrB; |
13-1039 |
9.15e-117 |
|
multidrug efflux RND transporter permease subunit AcrB;
Pssm-ID: 185081 [Multi-domain] Cd Length: 1049 Bit Score: 385.03 E-value: 9.15e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 13 SRLFILRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQ 92
Cdd:PRK15127 2 PNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 93 S-SGGASVVTLQFQLTLSLDVAEQEVQAAINAATNLLPSDLPNPPVySKVNPADPPIMTLAVTSSAMPMTQ--VEDMVET 169
Cdd:PRK15127 82 SdSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGV-SVEKSSSSFLMVVGVINTDGTMTQedISDYVAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 170 RVAQKISQVSGVGLVTLAGGQRpAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDG--PTRAVTLSAN----DQ 243
Cdd:PRK15127 161 NMKDPISRTSGVGDVQLFGSQY-AMRIWMNPNELNKFQLTPVDVINAIKAQNAQVAAGQLGGtpPVKGQQLNASiiaqTR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 244 MQSADEYRQLIIAY-QNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPK 322
Cdd:PRK15127 240 LTSTEEFGKILLKVnQDGSRVRLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 323 SVSVKVLSDRTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALT 402
Cdd:PRK15127 320 GLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 403 IATGFVVDDAIVVIENISRYI-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAIL 481
Cdd:PRK15127 400 LAIGLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMA 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 482 ISAVVSLTLTPMMCARML------SHESLRKQnrFSRASERMFERIIAAYGRVLAKVLNHPWATLGVALGTLALSVMLWI 555
Cdd:PRK15127 480 LSVLVALILTPALCATMLkpiakgDHGEGKKG--FFGWFNRMFEKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAYLFV 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 556 FIPKGFFPIQDNGIIQGTLQAPQSVSFANMAQRQQQVSEIIM--KDPAVESLTAYVGVDGTNPSLNSARLQINLKPLDDR 633
Cdd:PRK15127 558 RLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLNEVTDYYLtkEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADR 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 634 ---DDRVNAVIERLQNAVARVPGVELY---LQPIQDLTIDTQVSrtqYQFTLQATT-LDALSTWVPQLVDKLKALPQ-LS 705
Cdd:PRK15127 638 pgeENKVEAITMRATRAFSQIKDAMVFafnLPAIVELGTATGFD---FELIDQAGLgHEKLTQARNQLLGEAAKHPDmLV 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 706 DVSSDWQDKGLAAYVNVNRDTASRLGITMSDVDNALYNAFGQRLISTIYTQANQYRVVLEHNTDNTPGLAALDSVRLTSK 785
Cdd:PRK15127 715 GVRPNGLEDTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAA 794
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 786 DGGIVPLSAIASVEERYTPLSINHLDQFPSTTISFNVPDGYSLGEAVEsiLSAEKELSFPSDIQTQFQGstLAFQAAL-G 864
Cdd:PRK15127 795 DGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAME--LMEELASKLPTGVGYDWTG--MSYQERLsG 870
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 865 NTVWLIVA-AVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMIDFAL 943
Cdd:PRK15127 871 NQAPALYAiSLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAK 950
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 944 AAEREQGMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYLLFD 1023
Cdd:PRK15127 951 DLMDKEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR 1030
|
1050
....*....|....*.
gi 2084886474 1024 RlalwaksRFPKREEE 1039
Cdd:PRK15127 1031 R-------RFSRKNED 1039
|
|
| 2A0601 |
TIGR00914 |
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation ... |
25-1024 |
1.78e-95 |
|
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 129992 [Multi-domain] Cd Length: 1051 Bit Score: 326.72 E-value: 1.78e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 25 LLMVAILLAGIIG---YRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVT 101
Cdd:TIGR00914 15 LVLLATLVMAILGiwsYNRLPIDAVPDITNVQVQINTSAPGYSPLEVEQRVTYPIETAMAGLPGLETTRSLSRYGLSQVT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 102 LQFQLTLSLDVAEQEVQAAINAATNLLPSDlpnppvyskVNPADPPIMT----------LAVTSSAMPMTQVEDMVETRV 171
Cdd:TIGR00914 95 VIFKDGTDLYFARQLVNERLQQARDNLPEG---------VSPEMGPISTglgeiflytvEAEEGARKKDGGAYTLTDLRT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 172 AQ------KISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPTRAVTLSANDQMQ 245
Cdd:TIGR00914 166 IQdwiirpQLRTVPGVAEVNSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQNVGAGYIERRGEQYLVRAPGQVQ 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 246 SADEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLIESLPKSVS 325
Cdd:TIGR00914 246 SMDDIRNIVIATGEGVPIRIRDVARVQIGKELRTGAATENGKEVVLGTVFMLIGENSRTVAQAVGDKLETINKTLPEGVE 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 326 VKVLSDRTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALtiAT 405
Cdd:TIGR00914 326 IVTTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQGISANLMSLGAL--DF 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 406 GFVVDDAIVVIENISRYIEKGEKPLAAALK----------GAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVT 475
Cdd:TIGR00914 404 GLIVDGAVVIVENAHRRLAEAQHHHGRQLTlkerlhevfaASREVRRPLIFGQLIITLVFLPIFTLTGVEGKMFHPMAFT 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 476 LAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERmferiiaAYGRVLAKVLNHPWATLGVALGTLALSVMLWI 555
Cdd:TIGR00914 484 VVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVLKR-------RYEPLLERVLAWPAVVLGAAAVSIVLVVWIAS 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 556 FIPKGFFPIQDNG-IIQGTLQAPqSVSFANMAQRQQQVSEIIMKDPAVESL-----TAYVGVDGTNPslNSARLQINLKP 629
Cdd:TIGR00914 557 RVGGEFIPSLNEGdLAYQALRIP-GTSLAQSVAMQQTLEKLIKSFPEVARVfaktgTAEIATDPMPP--NASDTYIILKP 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 630 LDDRDDRVN---AVIERLQNAVARVPG-VELYLQPIQdLTIDTQVS--RTQYQFTLQATTLDALSTWVPQLVDKLKALPQ 703
Cdd:TIGR00914 634 ESQWPEGKKtkeDLIEEIQEATVRIPGnNYEFTQPIQ-MRFNELISgvRSDVAVKVFGDDLDDLDATAEKISAVLKGVPG 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 704 LSDVSSDWQDKGLAAYVNVNRDTASRLGITMSDVDNALYNAFGQRLISTIYTQANQYRVVL---EHNTDNTPGLAALDSV 780
Cdd:TIGR00914 713 AADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATAVGGRMSGETFEGDRRFDIVIrlpESLRESPQALRQLPIP 792
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 781 RLTSKDGGI--VPLSAIASVEERYTPLSINHLDQFPSTTISFNVpDGYSLGEAVESILSA-EKELSFPSDIQTQFQGSTL 857
Cdd:TIGR00914 793 LPLSEDARKqfIPLSDVADLRVSPGPNQISRENGKRRVVVSANV-RGRDLGSFVDDAKKAiAEQVKLPPGYWITWGGQFE 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 858 AFQAAlgnTVWLIVAAVVAMYIVLGVLYESF---IHPITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKN 934
Cdd:TIGR00914 872 QLQSA---TKRLQIVVPVTLLLIFVLLYAAFgnvKDALLVFTGIPFALTGGVFALWLRGIPLSISAAVGFIALSGVAVLN 948
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 935 AIMMIDFaLAAEREQGMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFT 1014
Cdd:TIGR00914 949 GLVMISF-IRKLLEEGPSLDEAVYEGALTRVRPVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFV 1027
|
1050
....*....|
gi 2084886474 1015 TPVIYLLFDR 1024
Cdd:TIGR00914 1028 LPALYRLVHR 1037
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
332-563 |
2.34e-18 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 90.69 E-value: 2.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 332 RTTNIRASVTDTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDD 411
Cdd:COG1033 209 RGDIAEAIQSDLAIFFPLALLLILLLLFLFFRSLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDY 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 412 AIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMgDIvgRLFREFAVTLAVAILISAVVSLTLT 491
Cdd:COG1033 289 GIHLLNRYREERRKGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFS-DI--PPIRDFGIVAAIGVLLAFLTSLTLL 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2084886474 492 PMmcarMLSHESLRKQNRFSRASERMFERIIAAYGRVlakVLNHPWATLGVALGTLALSVMLWIFI-----PKGFFP 563
Cdd:COG1033 366 PA----LLSLLPRPKPKTRRLKKPPELGRLLAKLARF---VLRRPKVILVVALVLAVVSLYGISRLkveydFEDYLP 435
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
290-492 |
5.11e-15 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 79.90 E-value: 5.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 290 IVMNVQRQPGANIIDTADSIRTMLPQLIESLPKSVSVKVLSDRTTNIRASVTDTQFE-LMLAIALVVMIIYLFLRNVPAT 368
Cdd:COG1033 553 VTVRLKDLDSEEIKALVEEVRAFLAENFPPDGVEVTLTGSAVLFAAINESVIESQIRsLLLALLLIFLLLLLAFRSLRLG 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 369 IIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLT 448
Cdd:COG1033 633 LISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKGGDLEEAIRRALRTTGKAILFTS 712
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2084886474 449 FSLIAVLIPLLFmGDIVGrlFREFAVTLAVAILISAVVSLTLTP 492
Cdd:COG1033 713 LTLAAGFGVLLF-SSFPP--LADFGLLLALGLLVALLAALLLLP 753
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
349-658 |
7.40e-10 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 62.86 E-value: 7.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 349 LAIALVVMIIylFLRNVPATIIPAVAVPLSLVGTFAVMVFL-------DFSINNLTLMALTIATgfvvDDAIVVIeniSR 421
Cdd:COG2409 179 LPVALVVLLL--VFRSLVAALLPLLTAGLAVGVALGLLALLaaftdvsSFAPNLLTMLGLGVGI----DYALFLV---SR 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 422 Y---IEKGEKPLAA---ALKGAGEI----GFTIIsltfslIAvLIPLLFMGDivgRLFREFAVTLAVAILISAVVSLTLT 491
Cdd:COG2409 250 YreeLRAGEDREEAvarAVATAGRAvlfsGLTVA------IA-LLGLLLAGL---PFLRSMGPAAAIGVAVAVLAALTLL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 492 PMMCArMLSHESLRKQNRFSRASERMFERIiaaYGRVLAKVLNHPWATLGVALGTL------ALSVMLWI----FIPKGF 561
Cdd:COG2409 320 PALLA-LLGRRVFWPRRPRRRRAAAPESGF---WRRLARAVVRRPVPVLVAAVAVLlalalpALGLRLGLpdadSLPADS 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 562 ------------FPIQDNGIIQGTLQAPQSVSFANMAQrQQQVSEIIMKDPAVESLTAYVGVDGTNPslNSARLQINLKp 629
Cdd:COG2409 396 psrqgydalaehFPPGSNGPLTVVVESDDDLDPADLAA-LDALAAALAAVPGVASVQPPTRPEGTDG--DAARLQVVPD- 471
|
330 340 350
....*....|....*....|....*....|
gi 2084886474 630 LDDRDDRVNAVIERLQNAVA-RVPGVELYL 658
Cdd:COG2409 472 GDPDSPEAIDLVDRLRDAAApALEGAEVLV 501
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
303-496 |
4.91e-07 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 53.06 E-value: 4.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 303 IDTADSIRTMLPQLIESLPKSVSVKVLSDRTTNIRASVT-DTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVG 381
Cdd:pfam03176 103 DESVAAVRDAVEQAPPPEGLKAYLTGPAATVADLRDAGDrDLGLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGA 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 382 TFAVMVFL----DFSINNLT---LMALTIATGfvVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIislTFSLIAV 454
Cdd:pfam03176 183 AQGLVAILahilGIGLSTFAlnlLVVLLIAVG--TDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVV---TAAGLTV 257
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2084886474 455 LIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCA 496
Cdd:pfam03176 258 AIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPALLA 299
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
319-514 |
8.58e-07 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 52.53 E-value: 8.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 319 SLPksVSVKVLSDRT-------TNIRASVtdtqFELMLAIALVV--MIIY--LFlrnvpaTIIPAVAVPLSLVGTFAVMV 387
Cdd:PRK05812 274 ALP--APLEIVEERTigpslgaDSIRAGL----IAGLIGLALVLlfMILYyrLF------GLIANIALVANLVLILAVLS 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 388 FLDFSinnLTL-----MALTIatGFVVDdAIVVI-ENISRYIEKGEKPLAAAlkgagEIGF-----TIIS--LTfSLIAV 454
Cdd:PRK05812 342 LLGAT---LTLpgiagIVLTI--GMAVD-ANVLIfERIREELREGRSLRSAI-----EAGFkrafsTILDsnIT-TLIAA 409
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 455 LIpLLFMGdiVGrLFREFAVTLAVAILISAVVSLTLTpmmcaRMLSHESLRKQNRFSRAS 514
Cdd:PRK05812 410 II-LYALG--TG-PVKGFAVTLGIGILTSMFTAITVT-----RALVNLLYGRRKRLKKLS 460
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
319-506 |
9.55e-07 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 52.42 E-value: 9.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 319 SLPksVSVKVLSDRT-------TNIRASVtdtqFELMLAIALVVMIIYLFLRnvpatiIPAVAVPLSLVG----TFAVMV 387
Cdd:COG0342 248 ALP--APLEIVEERTvgptlgaDSIEKGL----IAGLIGLLLVALFMLLYYR------LPGLVANIALALnvvlLLGVLS 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 388 FLDFsinNLTL-----MALTIATGfvVDDAIVVIENISRYIEKGeKPLAAALkgagEIGF-----TIIS--LTfSLIAVL 455
Cdd:COG0342 316 LLGA---TLTLpgiagIILTIGMA--VDANVLIFERIREELRAG-RSLRAAI----EAGFkrafsTILDanVT-TLIAAV 384
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2084886474 456 IpLLFMGdiVGRLfREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRK 506
Cdd:COG0342 385 V-LFVLG--TGPV-KGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKK 431
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
283-488 |
1.05e-06 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 50.33 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 283 WANKQQAIVMNVQRQPGANIIdTADSIRTMLPQLIESLpksvsvkvlsdrttnIRASVtdtqfeLMLAIALVVMIIYLFL 362
Cdd:TIGR00916 9 FADFAANIGKPAIVLDNAKVI-SAPVVGTVGPTLGGEL---------------IKAGI------IALLIGLVLVLLYMLL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 363 RNVPATIIPAVAVPLS-LVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGE-KPLAAALkgagEI 440
Cdd:TIGR00916 67 RYEWRGAIAAIAALVHdVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFDRIREELRKYKgRTFREAI----NL 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2084886474 441 GF------TIISLTFSLIAVLIPLLFMGDIVgrlfREFAVTLAVAILISAVVSL 488
Cdd:TIGR00916 143 GInqtlsrIIDTNVTTLLAVLALYVFGGGAI----KGFALTLGIGVIAGTYSSI 192
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
319-491 |
1.08e-05 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 49.21 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 319 SLPksVSVKVLSDRTT-------NIRASVtdtqfeLMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDF 391
Cdd:TIGR01129 225 ALP--APLQILEERTIgpslgadSIEAGI------KAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 392 SinnLTL-----MALTIatGFVVDDAIVVIENISRYIEKGEKPLAAAlkgagEIGF-----TIIS--LTfSLIAVLIPLL 459
Cdd:TIGR01129 297 T---LTLpgiagLILTI--GMAVDANVLIYERIKEELRLGKSVRQAI-----EAGFerafsTIFDanIT-TLIAALILYV 365
|
170 180 190
....*....|....*....|....*....|...
gi 2084886474 460 F-MGDIVGrlfreFAVTLAVAILISAVVSLTLT 491
Cdd:TIGR01129 366 FgTGPVKG-----FAVTLAIGIIASLFTALVFT 393
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
343-510 |
9.67e-05 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 46.78 E-value: 9.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 343 TQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENIsry 422
Cdd:PRK12911 909 TQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERI--- 985
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 423 ieKGEKPLAAALKGAGEIG----FTII---SLTFSLIAVLIPLLFMGDIVGrlfreFAVTLAVAILISAVVSLTLTP--- 492
Cdd:PRK12911 986 --REEYLLSRSLSESVEAGykkaFSAIfdsNLTTILASALLLMLDTGPIKG-----FALTLIIGIFSSMFTALFMTKfff 1058
|
170
....*....|....*...
gi 2084886474 493 MMCARMLSHESLRKQNRF 510
Cdd:PRK12911 1059 MIWMNKTQETQLHMMNKF 1076
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
347-550 |
1.04e-04 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 46.37 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 347 LMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKG 426
Cdd:TIGR00921 199 MAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIG 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 427 EKPLAAALKGAGEIGFTIIsltFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPmmcARMLSHESLRK 506
Cdd:TIGR00921 279 RAKGEAIVTAVRRTGRAVL---IALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLP---ALLQSIDIGRE 352
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2084886474 507 QNRFSRASERMFERIIA-AYGRVLAKVLNHPWATLGVALGTLALS 550
Cdd:TIGR00921 353 KVKKEIIAIGGKSSEIEeELSKVLSITVRHPVPALVAALIITGLG 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
319-500 |
1.43e-03 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 42.53 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 319 SLPksVSVKVLSDRTTN-------IRASVtdtqFELMLAIALVVMIIYLFLRnvPATIIPAVAVPLSLVGTFAVMVFLDF 391
Cdd:PRK13024 243 ALP--APLKIIESRSVGptlgqdaIDAGI----IAGIIGFALIFLFMLVYYG--LPGLIANIALLLYIFLTLGALSSLGA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 392 SINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTII--SLTfSLIAVLIplLFM---GDIvg 466
Cdd:PRK13024 315 VLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILdsNIT-TLIAAAI--LFFfgtGPV-- 389
|
170 180 190
....*....|....*....|....*....|....
gi 2084886474 467 rlfREFAVTLAVAILISAVVSLTLTPMMCARMLS 500
Cdd:PRK13024 390 ---KGFATTLIIGILASLFTAVFLTRLLLELLVK 420
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
349-482 |
7.56e-03 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 38.74 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 349 LAIALVVMIIYLFLRNVPATIIPAVAVPLS-LVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENI-SRYIEKG 426
Cdd:pfam02355 37 LLFALLLILIYVGLRFEWRFALGAIIALAHdVIITVGVFSLFGIEVDLATVAALLTIIGYSVNDTVVVFDRVrENLRKKT 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2084886474 427 EKPLAAALKGAGEIGF--TIISLTFSLIAVLIPLLFMGDIVgrlfREFAVTLAVAILI 482
Cdd:pfam02355 117 RATLNEIMNLSINQTLtrTINTSLTTLLVVVALFVFGGGSL----KDFSLALLVGVIV 170
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
347-501 |
8.41e-03 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 40.09 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 347 LMLAIALVVMII--YLFLrnvpaTIIPAVAVPLSLVGTFAVMVFLDFSinnLTL-----MALTIatGFVVDDAIVVIENI 419
Cdd:PRK14726 379 LIAAILVAALMIgfYGFL-----GVIAVIALIVNVVLIIAVLSLLGAT---LTLpgiagIVLTI--GMAVDSNVLIYERI 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084886474 420 sRYIEKGEKPLAAALkgagEIGF-----TIISLTFSLIAVLIPLLFMGDivgRLFREFAVTLAVAILISAVVSLTLTPMM 494
Cdd:PRK14726 449 -REEEKTGHSLIQAL----DRGFsralaTIVDANVTILIAAVILFFLGS---GAVRGFAVTLAVGILTTVFTAFTLTRSL 520
|
....*..
gi 2084886474 495 CARMLSH 501
Cdd:PRK14726 521 VAVWLRR 527
|
|
| |
