|
Name |
Accession |
Description |
Interval |
E-value |
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
668-906 |
5.05e-116 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 353.52 E-value: 5.05e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAasaR 747
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIA---R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRL 827
Cdd:COG0410 78 LGIGYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRADLERVYELFPRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 828 LMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSLTGSYLEV 906
Cdd:COG0410 158 LLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAYLGV 236
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
671-896 |
1.49e-106 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 328.24 E-value: 1.49e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAasaRRGI 750
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA---RAGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGSFAAPsRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLML 830
Cdd:cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARR-RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
671-896 |
1.29e-70 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 233.19 E-value: 1.29e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaaSARRGI 750
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE---RARAGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGSFAAPSRSvsPEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLML 830
Cdd:TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS--RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEgGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
669-904 |
4.62e-67 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 223.60 E-value: 4.62e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWprhQAAASARR 748
Cdd:PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW---QTAKIMRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENLDLGSFAApSRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLL 828
Cdd:PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFA-ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSLTGSYL 904
Cdd:PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYL 235
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
4-286 |
4.83e-60 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 206.45 E-value: 4.83e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 4 VVISGLIVGLLYAIAGLGFVVIYRTSKVLNFAMGGLGAVVAYVASDLID-LGLPYPVVVLLGLLVGGLLGALLELAIARP 82
Cdd:COG0559 7 QLLNGLSLGSIYALIALGLTLIFGVMGVINFAHGEFVMLGAYVAYTLATlLGLPLWLALLLAVLVAALLGVLLERLVIRP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 83 LRDRPHLTVALATLGALLILEGLVGLRYGFAPQSLAPAFDRGVglDVGPISISTNQLFVAGMGLVATVVLFAIVMRTRLG 162
Cdd:COG0559 87 LRGAPPLALLLATIGLSLVLQGLVLLIFGADPRSFPALLSGSV--ELGGVSIPAYRLFIIVVALVLLAALWLFLRRTRLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 163 LGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTPLTYLSPGSFTIFLLTAFAAVVLGGFTSVIGVVIGAL 242
Cdd:COG0559 165 LAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTMGFLLGLKAFAAVVLGGLGSIPGAVVGGL 244
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2045876399 243 VFGVATNLLLTYLDSSLISTYTFLGVALVLVLRPHGIFGRIERQ 286
Cdd:COG0559 245 LLGLAESLGAAYLPSGYKDVVAFVLLILVLLVRPQGLFGRKERE 288
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
671-897 |
4.75e-54 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 187.64 E-value: 4.75e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAasaRRGI 750
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA---RLGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 G---HIPEgrgIFPDLTVKENLDLG--------SFAAPSRSVSPEDLERV------LGyfpiLGDRLGQLAGTLSGGEQQ 813
Cdd:cd03219 78 GrtfQIPR---LFPELTVLENVMVAaqartgsgLLLARARREEREARERAeellerVG----LADLADRPAGELSYGQQR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 814 MLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230
|
....
gi 2045876399 894 AANP 897
Cdd:cd03219 231 RNNP 234
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
8-280 |
1.03e-53 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 188.02 E-value: 1.03e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 8 GLIVGLLYAIAGLGFVVIYRTSKVLNFAMGGLGAVVAYVA-SDLIDLGLPYPVVVLLGLLVGGLLGALLELAIARPLRDR 86
Cdd:cd06582 1 GLALGAIYALIALGLTLIFGVTGVINFAHGEFYMLGAYVAyTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 87 PHLTVaLATLGALLILEGLVGLRYGFAPQSLAPAFDRGVgLDVGPISISTNQLFVAGMGLVATVVLFAIVMRTRLGLGMR 166
Cdd:cd06582 81 PLLTL-LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGS-VELGGVTIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 167 AVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTPLTYLSPGSFTIFLLTAFAAVVLGGFTSVIGVVIGALVFGV 246
Cdd:cd06582 159 AVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTMGLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGL 238
|
250 260 270
....*....|....*....|....*....|....
gi 2045876399 247 ATNLLLTYLDSSLISTYTFLGVALVLVLRPHGIF 280
Cdd:cd06582 239 AESLAAAYLSSGYKDAVAFVLLILVLLVRPQGLF 272
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
671-905 |
2.11e-53 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 185.65 E-value: 2.11e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwprHQAAASARRGI 750
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDV-----ARDPAEVRRRI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDL-GSFAAPSRSVSPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLM 829
Cdd:COG1131 76 GYVPQEPALYPDLTVRENLRFfARLYGLPRKEARERIDELLELFG-LTDAADRKVGTLSGGMKQRLGLALALLHDPELLI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 830 LDEPSLGLAPLISQQVFNMMRTIADSGVSILL-------VEQnaraslaLADRAYVLSRGRVVLSGPADEvaanpsLTGS 902
Cdd:COG1131 155 LDEPTSGLDPEARRELWELLRELAAEGKTVLLsthyleeAER-------LCDRVAIIDKGRIVADGTPDE------LKAR 221
|
...
gi 2045876399 903 YLE 905
Cdd:COG1131 222 LLE 224
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
671-904 |
7.29e-53 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 184.28 E-value: 7.29e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaaSARRGI 750
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK---RARLGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLG-SFAAPSRSVSPEDLERVLGYFPILGDRLgQLAGTLSGGEQQMLAIARALLSRPRLLM 829
Cdd:cd03218 78 GYLPQEASIFRKLTVEENILAVlEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVEIARALATNPKFLL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 830 LDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSLTGSYL 904
Cdd:cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYL 231
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
667-897 |
4.87e-50 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 177.15 E-value: 4.87e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasA 746
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRI---A 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIG---HIPEgrgIFPDLTVKENLDLGSFAAPSRSVSPEDL----------------ERVLGYFPiLGDRLGQLAGTL 807
Cdd:COG0411 78 RLGIArtfQNPR---LFPELTVLENVLVAAHARLGRGLLAALLrlprarreereareraEELLERVG-LADRADEPAGNL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 808 SGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVL 886
Cdd:COG0411 154 SYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLrDERGITILLIEHDMDLVMGLADRIVVLDFGRVIA 233
|
250
....*....|.
gi 2045876399 887 SGPADEVAANP 897
Cdd:COG0411 234 EGTPAEVRADP 244
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
671-904 |
5.66e-48 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 170.53 E-value: 5.66e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaASARRGI 750
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMH---ERARLGI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLD--LGSFAAPSRSVSPEDLERVLGYFPI--LGDrlgQLAGTLSGGEQQMLAIARALLSRPR 826
Cdd:TIGR04406 79 GYLPQEASIFRKLTVEENIMavLEIRKDLDRAEREERLEALLEEFQIshLRD---NKAMSLSGGERRRVEIARALATNPK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 827 LLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSLTGSYL 904
Cdd:TIGR04406 156 FILLDEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVYL 233
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
668-897 |
6.54e-48 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 170.60 E-value: 6.54e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaaSAR 747
Cdd:COG1137 1 MMTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHK---RAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIPEGRGIFPDLTVKENLDL-GSFAAPSRSVSPEDLERVLGYFPILGDRlGQLAGTLSGGEQQMLAIARALLSRPR 826
Cdd:COG1137 78 LGIGYLPQEASIFRKLTVEDNILAvLELRKLSKKEREERLEELLEEFGITHLR-KSKAYSLSGGERRRVEIARALATNPK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 827 LLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG1137 157 FILLDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNP 227
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
670-896 |
9.47e-48 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 170.04 E-value: 9.47e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaasARRG 749
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPRE-----ARRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLD-LGSFAAPSRSVSPEDLERVLGYFpILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLL 828
Cdd:COG4555 76 IGVLPDERGLYDRLTVRENIRyFAELYGLFDEELKKRIEELIELL-GLEEFLDRRVGELSTGMKKKVALARALVHDPKVL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:COG4555 155 LLDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREE 222
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
349-623 |
2.22e-47 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 170.65 E-value: 2.22e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 349 DDRRLFLLATAFAMFVGVLGLNVLAGFSGQVSLGQSAFLAIGAYTAAVAVDR-GLPPLVGVALALVVGGGAGLLLGLPAT 427
Cdd:COG4177 1 SPYYLSLLTLILIYAILALGLNLLLGYTGLLSLGHAAFFGIGAYAAALLTTHlGLPFWLALLLAGLVAALLGLLIGLPAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 428 RLSGIYLTLLTLIFAFALPELIVYLKDVTNGASGLPLTPPEFLF-----VPANMYWFMLAAACAVGAGVMVLAGTRTGRA 502
Cdd:COG4177 81 RLRGDYLAIATLAFAEIVRLLALNLESLTGGADGLSGIPRPTLFgldlgSPLAFYYLVLALLVLVLLLLRRLVRSRFGRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 503 WRAVRDSEDGARSLGLKPAGVKLGAFTLGSALAALGGALGGLLVGFVGPDSYGVFVSIYALLAVVLGGSGSVFGSLLGAL 582
Cdd:COG4177 161 LRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESFSFLLSIEILLMVVLGGLGSLLGPVLGAV 240
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2045876399 583 FITVVPDVTGGSGIPQNLLFGIALLLVLFLAPRGLAGLLER 623
Cdd:COG4177 241 LLVLLPELLRSLPEYRLLIFGLLLILVVLFRPRGLAGLLRR 281
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
359-619 |
3.77e-44 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 160.69 E-value: 3.77e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 359 AFAMFVGVLGLNVLAGFSGQVSLGQSAFLAIGAYTAAV-AVDRGLPPLVGVALALVVGGGAGLLLGLPATRLSGIYLTLL 437
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGQLSLGHAAFFGIGAYTAALlATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFAIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 438 TLIFAFALPELIVYLKDVTNGASGLPLTPPEFLFV-----PANMYWFMLAAACAVGAGVMVLAGTRTGRAWRAVRDSEDG 512
Cdd:cd06581 81 TLAFAEIVRLLALNWSSLTGGSNGLSGIPPPLLGGlllssPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 513 ARSLGLKPAGVKLGAFTLGSALAALGGALGGLLVGFVGPDSYGVFVSIYALLAVVLGGSGSVFGSLLGALFITVVPDVTG 592
Cdd:cd06581 161 AEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIELLLMVVLGGLGSLLGPVLGAALLVLLPELLR 240
|
250 260
....*....|....*....|....*...
gi 2045876399 593 GSGIP-QNLLFGIALLLVLFLAPRGLAG 619
Cdd:cd06581 241 SLGPGlRLLVFGLLLILVVLFLPRGLVG 268
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
671-884 |
1.26e-42 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 152.94 E-value: 1.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwprHQAAASARRGI 750
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI-----KKEPEEVKRRI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDlgsfaapsrsvspedlervlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSRPRLLML 830
Cdd:cd03230 76 GYLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLIL 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
667-893 |
1.63e-42 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 162.50 E-value: 1.63e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwpRHQAAASA 746
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVR---FRSPRDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDLER----VLgyfpilgDRLG------QLAGTLSGGEQQMLA 816
Cdd:COG1129 78 AAGIAIIHQELNLVPNLSVAENIFLGREPRRGGLIDWRAMRRrareLL-------ARLGldidpdTPVGDLSVAQQQLVE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 817 IARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVeqnaraS------LALADRAYVLSRGRVVLSGPA 890
Cdd:COG1129 151 IARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYI------ShrldevFEIADRVTVLRDGRLVGTGPV 224
|
...
gi 2045876399 891 DEV 893
Cdd:COG1129 225 AEL 227
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
671-893 |
2.41e-42 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 156.42 E-value: 2.41e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhqaaASARRGI 750
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD--------PEDRRRI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENL-DLGSFAAPSRSVSPEDLERVLGYFPIlGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLM 829
Cdd:COG4152 74 GYLPEERGLYPKMKVGEQLvYLARLKGLSKAEAKRRADEWLERLGL-GDRANKKVEELSKGNQQKVQLIAALLHDPELLI 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 830 LDEPSLGLAPlISQQVF-NMMRTIADSGVSIL-------LVEQnaraslaLADRAYVLSRGRVVLSGPADEV 893
Cdd:COG4152 153 LDEPFSGLDP-VNVELLkDVIRELAAKGTTVIfsshqmeLVEE-------LCDRIVIINKGRKVLSGSVDEI 216
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
670-893 |
6.71e-42 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 153.66 E-value: 6.71e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRhqaAASARRg 749
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSR---RELARR- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLDLG--SFAAPSRSVSPEDLERV------LGyfpiLGDRLGQLAGTLSGGEQQMLAIARAL 821
Cdd:COG1120 77 IAYVPQEPPAPFGLTVRELVALGryPHLGLFGRPSAEDREAVeealerTG----LEHLADRPVDELSGGERQRVLIARAL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVFNMMRTIA-DSGVSILLV----EQNARaslaLADRAYVLSRGRVVLSGPADEV 893
Cdd:COG1120 153 AQEPPLLLLDEPTSHLDLAHQLEVLELLRRLArERGRTVVMVlhdlNLAAR----YADRLVLLKDGRIVAQGPPEEV 225
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
669-893 |
1.97e-40 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 149.44 E-value: 1.97e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWpRHQAAASAR 747
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTAL-RGRALRRLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIPEGRGIFPDLTVKENLDLGSFAAPS------RSVSPED-------LERVlGyfpiLGDRLGQLAGTLSGGEQQM 814
Cdd:COG3638 80 RRIGMIFQQFNLVPRLSVLTNVLAGRLGRTStwrsllGLFPPEDreraleaLERV-G----LADKAYQRADQLSGGQQQR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 815 LAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIA-DSGVSILL----VEqnarasLAL--ADRAYVLSRGRVVLS 887
Cdd:COG3638 155 VAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIArEDGITVVVnlhqVD------LARryADRIIGLRDGRVVFD 228
|
....*.
gi 2045876399 888 GPADEV 893
Cdd:COG3638 229 GPPAEL 234
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
686-833 |
2.11e-40 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 145.87 E-value: 2.11e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaaSARRGIGHIPEGRGIFPDLTV 765
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK----SLRKEIGYVFQDPQLFPRLTV 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 766 KENLDLG-SFAAPSRSVSPEDLERVLGYFPILG---DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:pfam00005 77 RENLRLGlLLKGLSKREKDARAEEALEKLGLGDladRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
668-885 |
7.75e-40 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 147.11 E-value: 7.75e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVS----AGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAA 743
Cdd:COG1136 2 SPLLELRNLTksygTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 744 ASARRGIGHIPEGRGIFPDLTVKENLDLG-SFAAPSRSVSPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALL 822
Cdd:COG1136 82 RLRRRHIGFVFQFFNLLPELTALENVALPlLLAGVSRKERRERARELLERVG-LGDRLDHRPSQLSGGQQQRVAIARALV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIA-DSGVSILLVEQNARAsLALADRAYVLSRGRVV 885
Cdd:COG1136 161 NRPKLILADEPTGNLDSKTGEEVLELLRELNrELGTTIVMVTHDPEL-AARADRVIRLRDGRIV 223
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
671-887 |
2.70e-39 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 142.95 E-value: 2.70e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGW-PRHqaaaSARRG 749
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAsPRD----ARRAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEgrgifpdltvkenldlgsfaapsrsvspedlervlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSRPRLLM 829
Cdd:cd03216 77 IAMVYQ---------------------------------------------------LSVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 830 LDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLS 887
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
671-888 |
3.56e-39 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 144.35 E-value: 3.56e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhqaaASARRGI 750
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD--------IAARNRI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLD-LGSFAAPSRSVSPEDLERVLGYFPIlGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLM 829
Cdd:cd03269 73 GYLPEERGLYPKMKVIDQLVyLAQLKGLKKEEARRRIDEWLERLEL-SEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 830 LDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
671-893 |
1.43e-38 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 143.86 E-value: 1.43e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYG-VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqAAASARRG 749
Cdd:cd03256 1 IEVENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK-ALRQLRRQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLDLGSFAAPS------RSVSPEDLERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARAL 821
Cdd:cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRStwrslfGLFPKEEKQRALAALERVGllDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
671-888 |
1.98e-38 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 142.66 E-value: 1.98e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaasaRRGI 750
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE------RRNI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLG-----SFAAPSRSVSPEDLERVlgyfpILGDRLGQLAGTLSGGEQQMLAIARALLSRP 825
Cdd:cd03259 75 GMVFQDYALFPHLTVAENIAFGlklrgVPKAEIRARVRELLELV-----GLEGLLNRYPHELSGGQQQRVALARALAREP 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03259 150 SLLLLDEPLSALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
671-884 |
3.27e-38 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 141.86 E-value: 3.27e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVE----PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASA 746
Cdd:cd03255 1 IELKNLSKTYGGGgekvQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPED-----LERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARAL 821
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERREraeelLERV-G----LGDRLNHYPSELSGGQQQRVAIARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVFNMMRTIA-DSGVSILLVEQNARAsLALADRAYVLSRGRV 884
Cdd:cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNkEAGTTIVVVTHDPEL-AEYADRIIELRDGKI 218
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
669-904 |
3.93e-38 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 142.73 E-value: 3.93e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaASARR 748
Cdd:PRK10895 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH---ARARR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENL--------DLGSFAAPSRSvspedlERVLGYFPI--LGDRLGQlagTLSGGEQQMLAIA 818
Cdd:PRK10895 79 GIGYLPQEASIFRRLSVYDNLmavlqirdDLSAEQREDRA------NELMEEFHIehLRDSMGQ---SLSGGERRRVEIA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 819 RALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229
|
....*.
gi 2045876399 899 LTGSYL 904
Cdd:PRK10895 230 VKRVYL 235
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
667-903 |
4.28e-38 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 142.54 E-value: 4.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwprhqaaASA 746
Cdd:COG1121 3 MMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP---------RRA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGI---FPdLTVKENLDLGSFAA--PSRSVSPEDLERV------LGyfpiLGDRLGQLAGTLSGGEQQML 815
Cdd:COG1121 74 RRRIGYVPQRAEVdwdFP-ITVRDVVLMGRYGRrgLFRRPSRADREAVdealerVG----LEDLADRPIGELSGGQQQRV 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 816 AIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRgRVVLSGPADEVAA 895
Cdd:COG1121 149 LLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNR-GLVAHGPPEEVLT 227
|
....*...
gi 2045876399 896 NPSLTGSY 903
Cdd:COG1121 228 PENLSRAY 235
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
670-897 |
9.87e-38 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 141.28 E-value: 9.87e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgWPRHQAAASARRG 749
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDL--TDSKKDINKLRRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLDLgsfaAP--SRSVSPED--------LERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIAR 819
Cdd:COG1126 79 VGMVFQQFNLFPHLTVLENVTL----APikVKKMSKAEaeeramelLERV-G----LADKADAYPAQLSGGQQQRVAIAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLV--EQN-ARaslALADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:COG1126 150 ALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVthEMGfAR---EVADRVVFMDGGRIVEEGPPEEFFEN 226
|
.
gi 2045876399 897 P 897
Cdd:COG1126 227 P 227
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
671-899 |
1.18e-37 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 140.93 E-value: 1.18e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasaRRG 749
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLREL----RRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEgrgiFPDL-----TVKENLdlgSFAAPSRSVSPEDL-ERVLGYFPILGdrLGQLAG----TLSGGEQQMLAIAR 819
Cdd:COG1122 77 VGLVFQ----NPDDqlfapTVEEDV---AFGPENLGLPREEIrERVEEALELVG--LEHLADrpphELSGGQKQRVAIAG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:COG1122 148 VLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYEL 227
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
671-884 |
1.55e-37 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 139.95 E-value: 1.55e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasaRRGI 750
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEW----RRQV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDlTVKENLDLGsFAAPSRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLML 830
Cdd:COG4619 77 AYVPQEPALWGG-TVRDNLPFP-FQLRERKFDRERALELLERLGLPPDILDKPVERLSGGERQRLALIRALLLQPDVLLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRT-IADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:COG4619 155 DEPTSALDPENTRRVEELLREyLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
669-861 |
3.33e-37 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 138.77 E-value: 3.33e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwprHQAAASARR 748
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPI-----RDAREDYRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENLDLgSFAAPSRSVSPEDLERVLGYFpILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLL 828
Cdd:COG4133 76 RLAYLGHADGLKPELTVRENLRF-WAALYGLRADREAIDEALEAV-GLAGLADLPVRQLSAGQKRRVALARLLLSPAPLW 153
|
170 180 190
....*....|....*....|....*....|...
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTIADSGVSILL 861
Cdd:COG4133 154 LLDEPFTALDAAGVALLAELIAAHLARGGAVLL 186
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
683-898 |
3.74e-37 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 139.78 E-value: 3.74e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 683 EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPrhqaaaSARRGIGHIPEGRGIFPD 762
Cdd:cd03299 12 EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP------PEKRDISYVPQNYALFPH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 LTVKENLdlgSFAAPSRSVS-PEDLERVLGYFPILGDR--LGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAP 839
Cdd:cd03299 86 MTVYKNI---AYGLKKRKVDkKEIERKVLEIAEMLGIDhlLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 840 LISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:cd03299 163 RTKEKLREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPK 222
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
672-883 |
4.43e-37 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 138.37 E-value: 4.43e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 672 RLVGVSAGY--GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaasARRG 749
Cdd:cd03225 1 ELKNLSFSYpdGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKE----LRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEgrgiFPD-----LTVKENLdlgSFAAPSRSVSPED-LERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARAL 821
Cdd:cd03225 77 VGLVFQ----NPDdqffgPTVEEEV---AFGLENLGLPEEEiEERVEEALELVGleGLRDRSPFTLSGGQKQRVAIAGVL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGR 883
Cdd:cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
663-885 |
5.29e-37 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 146.32 E-value: 5.29e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 663 DRQGSEALLRLVGVSAGYGVEPVlrelDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwPRHQA 742
Cdd:COG1129 249 AAAPGEVVLEVEGLSVGGVVRDV----SFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVR--IRSPR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 743 AAsARRGIGHIPEGR---GIFPDLTVKENLDLGSFAAPSRS--VSP----EDLERVLGYFPILGDRLGQLAGTLSGGEQQ 813
Cdd:COG1129 323 DA-IRAGIAYVPEDRkgeGLVLDLSIRENITLASLDRLSRGglLDRrrerALAEEYIKRLRIKTPSPEQPVGNLSGGNQQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 814 MLAIARALLSRPRLLMLDEPSLGlaplIS----QQVFNMMRTIADSGVSILLVeqnaraS------LALADRAYVLSRGR 883
Cdd:COG1129 402 KVVLAKWLATDPKVLILDEPTRG----IDvgakAEIYRLIRELAAEGKAVIVI------SselpelLGLSDRILVMREGR 471
|
..
gi 2045876399 884 VV 885
Cdd:COG1129 472 IV 473
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
643-897 |
9.09e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 145.82 E-value: 9.09e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 643 EIGPERETVADP----------VLETPSSSDRQGSEALLRLVGVSAGYGVE-----PVLRELDLTVGKGEIVALLGANGA 707
Cdd:COG1123 223 EDGPPEEILAAPqalaavprlgAARGRAAPAAAAAEPLLEVRNLSKRYPVRgkggvRAVDDVSLTLRRGETLGLVGESGS 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 708 GKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIGHI---PEGrGIFPDLTVKENLD--LGSFAAPSRSVS 782
Cdd:COG1123 303 GKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE-LRRRVQMVfqdPYS-SLNPRMTVGDIIAepLRLHGLLSRAER 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 783 PEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILL 861
Cdd:COG1123 381 RERVAELLERVGLPPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLF 460
|
250 260 270
....*....|....*....|....*....|....*.
gi 2045876399 862 VEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG1123 461 ISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANP 496
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
667-897 |
2.41e-36 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 141.00 E-value: 2.41e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaasa 746
Cdd:COG3842 2 AMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPE------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPED--------LERVlgyfpilgdRLGQLA----GTLSGGEQQM 814
Cdd:COG3842 76 KRNVGMVFQDYALFPHLTVAENV---AFGLRMRGVPKAEirarvaelLELV---------GLEGLAdrypHQLSGGQQQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 815 LAIARALLSRPRLLMLDEPSLGL-APLISQQVFNMMRTIADSGVSILLV-----EqnArasLALADRAYVLSRGRVVLSG 888
Cdd:COG3842 144 VALARALAPEPRVLLLDEPLSALdAKLREEMREELRRLQRELGITFIYVthdqeE--A---LALADRIAVMNDGRIEQVG 218
|
....*....
gi 2045876399 889 PADEVAANP 897
Cdd:COG3842 219 TPEEIYERP 227
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
668-884 |
1.52e-35 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 132.94 E-value: 1.52e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGYGVEPVlrelDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasAR 747
Cdd:cd03215 2 EPVLEVRGLSVKGAVRDV----SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA---IR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIPEGR---GIFPDLTVKENLDLGSFaapsrsvspedlervlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSR 824
Cdd:cd03215 75 AGIAYVPEDRkreGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARD 122
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 825 PRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVeqnaraS------LALADRAYVLSRGRV 884
Cdd:cd03215 123 PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI------SseldelLGLCDRILVMYEGRI 182
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
667-897 |
3.11e-35 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 134.34 E-value: 3.11e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsA 746
Cdd:COG1127 2 SEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYE-L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGIFPDLTVKENLdlgsfAAPSR---SVSPEDL-ERVLgyfpilgDRLGQ--LAGT-------LSGGEQQ 813
Cdd:COG1127 81 RRRIGMLFQGGALFDSLTVFENV-----AFPLRehtDLSEAEIrELVL-------EKLELvgLPGAadkmpseLSGGMRK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 814 MLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADE 892
Cdd:COG1127 149 RVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEE 228
|
....*
gi 2045876399 893 VAANP 897
Cdd:COG1127 229 LLASD 233
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
671-895 |
4.02e-35 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 133.78 E-value: 4.02e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGI 750
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR-LRRRM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLdlgsfAAPSR--SVSPEDL--ERVL------GyfpiLGDRLGQLAGTLSGGEQQMLAIARA 820
Cdd:cd03261 80 GMLFQSGALFDSLTVFENV-----AFPLRehTRLSEEEirEIVLekleavG----LRGAEDLYPAELSGGMKKRVALARA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 821 LLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
672-883 |
5.94e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 130.44 E-value: 5.94e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 672 RLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasaRRGIG 751
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL----RRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 752 HIPEgrgifpdltvkenldlgsfaapsrsvspedlervlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSRPRLLMLD 831
Cdd:cd00267 77 YVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 832 EPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGR 883
Cdd:cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
671-885 |
2.96e-34 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 130.94 E-value: 2.96e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRG 749
Cdd:COG2884 2 IRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPY-LRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLDL-----GSFAAPSRSVSPEDLERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSR 824
Cdd:COG2884 81 IGVVFQDFRLLPDRTVYENVALplrvtGKSRKEIRRRVREVLDLV-G----LSDKAKALPHELSGGEQQRVAIARALVNR 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 825 PRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSIL-------LVEQNARaslaladRAYVLSRGRVV 885
Cdd:COG2884 156 PELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLiathdleLVDRMPK-------RVLELEDGRLV 216
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
684-892 |
1.11e-33 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 129.16 E-value: 1.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSwegepLSGWPRHQAAASARRGIGHIPEGRGIFPDL 763
Cdd:cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY-----INGYSIRTDRKAARQSLGYCPQFDALFDEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDL-----GSFAAPSRSVSpEDLERVLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLA 838
Cdd:cd03263 91 TVREHLRFyarlkGLPKSEIKEEV-ELLLRVLG----LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 839 PLISQQVFNMMRTIAdSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADE 892
Cdd:cd03263 166 PASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
671-888 |
1.47e-33 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 128.49 E-value: 1.47e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGeplsgwPRHQAAASARRGI 750
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG------KSYQKNIEALRRI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDLERVLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLML 830
Cdd:cd03268 75 GALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG----LKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTIADSGVSILL-------VEQnaraslaLADRAYVLSRGRVVLSG 888
Cdd:cd03268 151 DEPTNGLDPDGIKELRELILSLRDQGITVLIsshllseIQK-------VADRIGIINKGKLIEEG 208
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
671-884 |
1.76e-33 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 128.42 E-value: 1.76e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwpRHQAAASARRGI 750
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD--DKKNINELRQKV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSP------EDLERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSR 824
Cdd:cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEaeeralELLEKV-G----LADKADAYPAQLSGGQQQRVAIARALAMN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 825 PRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
667-904 |
1.83e-33 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 129.72 E-value: 1.83e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAasa 746
Cdd:PRK11300 2 SQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGIFPDLTVKENLDL------------GSFAAPS-RSVSPEDLERVLGYFpilgDRLGQL------AGTL 807
Cdd:PRK11300 79 RMGVVRTFQHVRLFREMTVIENLLVaqhqqlktglfsGLLKTPAfRRAESEALDRAATWL----ERVGLLehanrqAGNL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 808 SGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVL 886
Cdd:PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234
|
250
....*....|....*...
gi 2045876399 887 SGPADEVAANPSLTGSYL 904
Cdd:PRK11300 235 NGTPEEIRNNPDVIKAYL 252
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
666-885 |
2.20e-33 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 129.44 E-value: 2.20e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 666 GSEALLRLVGVSAGYGVE----PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprhq 741
Cdd:COG1116 3 AAAPALELRGVSKRFPTGgggvTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTG----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 742 aaASARRGIghIPEGRGIFPDLTVKENLDLGsfaAPSRSVSP-EDLERVLGYFPI--LGDRLGQLAGTLSGGEQQMLAIA 818
Cdd:COG1116 78 --PGPDRGV--VFQEPALLPWLTVLDNVALG---LELRGVPKaERRERARELLELvgLAGFEDAYPHQLSGGMRQRVAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 819 RALLSRPRLLMLDEPslgLAPLISQQVFNM----MRTIADSGVSILLVEQNARASLALADRAYVLSR--GRVV 885
Cdd:COG1116 151 RALANDPEVLLMDEP---FGALDALTRERLqdelLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIV 220
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
564-897 |
3.02e-33 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 136.05 E-value: 3.02e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 564 LAVVLGGSGSVFGSLLGALFITVVpdVTGGSGIPQNLLFGiALLLVLFLAPRGLAGLLERATLAALGFRERRAARAHGLE 643
Cdd:COG4987 235 LARLSALAQALLQLAAGLAVVAVL--WLAAPLVAAGALSG-PLLALLVLAALALFEALAPLPAAAQHLGRVRAAARRLNE 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 644 IGPERETVADPVLETPSSSDrqgseALLRLVGVSAGY--GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIP 721
Cdd:COG4987 312 LLDAPPAVTEPAEPAPAPGG-----PSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLD 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 722 ADSGDLSWEGEPLSGWPRhqaaASARRGIGHIPEGRGIFPDlTVKENLDLgsfAAPSrsVSPEDLERVL----------- 790
Cdd:COG4987 387 PQSGSITLGGVDLRDLDE----DDLRRRIAVVPQRPHLFDT-TLRENLRL---ARPD--ATDEELWAALervglgdwlaa 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 791 ---GyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADsGVSILLVEQNAR 867
Cdd:COG4987 457 lpdG----LDTWLGEGGRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA-GRTVLLITHRLA 531
|
330 340 350
....*....|....*....|....*....|
gi 2045876399 868 AsLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG4987 532 G-LERMDRILVLEDGRIVEQGTHEELLAQN 560
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
680-892 |
3.16e-33 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 127.87 E-value: 3.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 680 YGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSwegepLSGWPRHQAAASARRGIGHIPEGRGI 759
Cdd:cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT-----VAGHDVVREPREVRRRIGIVFQDLSV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 FPDLTVKENLDL-GSFAAPSRSVSPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLA 838
Cdd:cd03265 85 DDELTGWENLYIhARLYGVPGAERRERIDELLDFVG-LLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 839 PLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADE 892
Cdd:cd03265 164 PQTRAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
685-888 |
4.08e-33 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 127.48 E-value: 4.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSwegepLSGWPRHQAAASARRGIGHIPEGRGIFPDLT 764
Cdd:cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT-----VDGFDVVKEPAEARRRLGFVSDSTGLYDRLT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 765 VKENL----DLGSFAAPSRSVSPEDLERVLGYFPILGDRlgqlAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPL 840
Cdd:cd03266 95 ARENLeyfaGLYGLKGDELTARLEELADRLGMEELLDRR----VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVM 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2045876399 841 ISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03266 171 ATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
688-899 |
5.85e-33 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 131.00 E-value: 5.85e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 688 ELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGHIPEGRGIFPDLTVKE 767
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 768 NLDLG-SFA-APSRSVSPEDLERVLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQV 845
Cdd:TIGR02142 95 NLRYGmKRArPSERRISFERVIELLG----IGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 846 FNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:TIGR02142 171 LPYLERLHAEfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
670-898 |
7.36e-33 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 127.61 E-value: 7.36e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGV----EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwpRHQAAAS 745
Cdd:COG1124 1 MLEVRNLSVSYGQggrrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPV----TRRRRKA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 ARRGIGHIP-EGRGIF-PDLTVKENLDLGsFAAPSRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLS 823
Cdd:COG1124 77 FRRRVQMVFqDPYASLhPRHTVDRILAEP-LRIHGLPDREERIAELLEQVGLPPSFLDRYPHQLSGGQRQRVAIARALIL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:COG1124 156 EPELLLLDEPTSALDVSVQAEILNLLKDLrEERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPK 231
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
675-888 |
1.08e-32 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 124.86 E-value: 1.08e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 675 GVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAasarRGIGHIP 754
Cdd:cd03214 4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELA----RKIAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 755 egrgifpdlTVKENLDLGSFAApsRSVSpedlervlgyfpilgdrlgqlagTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:cd03214 80 ---------QALELLGLAHLAD--RPFN-----------------------ELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 835 LGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03214 126 SHLDIAHQIELLELLRRLARErGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
663-892 |
1.23e-32 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 133.25 E-value: 1.23e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 663 DRQGSEA--LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprH 740
Cdd:PRK15439 2 QTSDTTAppLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCA----R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 741 QAAASARR-GIGHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPEDLERVLGYFPILGDrLGQLAGTLSGGEQQMLAIAR 819
Cdd:PRK15439 78 LTPAKAHQlGIYLVPQEPLLFPNLSVKENI---LFGLPKRQASMQKMKQLLAALGCQLD-LDSSAGSLEVADRQIVEILR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADE 892
Cdd:PRK15439 154 GLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD 226
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
688-900 |
2.93e-32 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 129.07 E-value: 2.93e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 688 ELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGHIP-EGRgIFPDLTVK 766
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFLPPHRRRIGYVFqEAR-LFPHLSVR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 767 ENLDLGSFAAP--SRSVSPEDLERVLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEP--SLGLAplIS 842
Cdd:COG4148 96 GNLLYGRKRAPraERRISFDEVVELLG----IGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPlaALDLA--RK 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 843 QQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSLT 900
Cdd:COG4148 170 AEILPYLERLRDElDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLL 228
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
666-893 |
3.02e-32 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 132.07 E-value: 3.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 666 GSEALLRLVGVSAGYGvePV--LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwPRHQAA 743
Cdd:COG3845 1 MMPPALELRGITKRFG--GVvaNDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVR--IRSPRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 744 AsARRGIGHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDLERVLGyfpILGDRLG------QLAGTLSGGEQQMLAI 817
Cdd:COG3845 77 A-IALGIGMVHQHFMLVPNLTVAENIVLGLEPTKGGRLDRKAARARIR---ELSERYGldvdpdAKVEDLSVGEQQRVEI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 818 ARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVeqnaraS------LALADRAYVLSRGRVVLSGPAD 891
Cdd:COG3845 153 LKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFI------ThklrevMAIADRVTVLRRGKVVGTVDTA 226
|
..
gi 2045876399 892 EV 893
Cdd:COG3845 227 ET 228
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
676-897 |
4.71e-32 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 125.21 E-value: 4.71e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 676 VSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwpRHQAAASARRGIGHIPE 755
Cdd:PRK09493 7 VSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND--PKVDERLIRQEAGMVFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 756 GRGIFPDLTVKENLDLG------SFAAPSRSVSPEDLERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLM 829
Cdd:PRK09493 85 QFYLFPHLTALENVMFGplrvrgASKEEAEKQARELLAKV-G----LAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 830 LDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
671-883 |
5.04e-32 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 122.68 E-value: 5.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAasARRGI 750
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP--LRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGsfaapsrsvspedlervlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSRPRLLML 830
Cdd:cd03229 79 GMVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLL 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTIAD-SGVSILLVEQNARASLALADRAYVLSRGR 883
Cdd:cd03229 125 DEPTSALDPITRREVRALLKSLQAqLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
685-886 |
6.20e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 125.58 E-value: 6.20e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsarrgigHIpeGR------- 757
Cdd:COG1101 21 ALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAK-------YI--GRvfqdpmm 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 758 GIFPDLTVKENLDL----GSFAAPSRSVSPEDLERVLGYFPILG----DRLGQLAGTLSGGEQQMLAIARALLSRPRLLM 829
Cdd:COG1101 92 GTAPSMTIEENLALayrrGKRRGLRRGLTKKRRELFRELLATLGlgleNRLDTKVGLLSGGQRQALSLLMATLTKPKLLL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 830 LDEPSLGLAPLISQQVFNM-MRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVL 886
Cdd:COG1101 172 LDEHTAALDPKTAALVLELtEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIIL 229
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
668-893 |
6.42e-32 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 124.81 E-value: 6.42e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVI-PADSGDLSWEGEPLSGWPrhqaAASA 746
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLpPTYGNDVRLFGERRGGED----VWEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHI-PE-GRGIFPDLTVKENLDLGSFAA--PSRSVSPEDLERVLGYFPILGdrLGQLA----GTLSGGEQQMLAIA 818
Cdd:COG1119 77 RKRIGLVsPAlQLRFPRDETVLDVVLSGFFDSigLYREPTDEQRERARELLELLG--LAHLAdrpfGTLSQGEQRRVLIA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 819 RALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSG-VSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:COG1119 155 RALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEV 230
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
671-897 |
1.20e-31 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 123.71 E-value: 1.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVlrELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhqAAASARRGI 750
Cdd:COG3840 2 LRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLT------ALPPAERPV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGsfAAPSRSVSPEDLERV------LGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSR 824
Cdd:COG3840 74 SMLFQENNLFPHLTVAQNIGLG--LRPGLKLTAEQRAQVeqalerVG----LAGLLDRLPGQLSGGQRQRVALARCLVRK 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 825 PRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG3840 148 RPILLLDEPFSALDPALRQEMLDLVDELCRErGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGE 221
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
675-888 |
1.45e-31 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 122.64 E-value: 1.45e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 675 GVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprhqaaasARRGIGHIP 754
Cdd:cd03235 4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK---------ERKRIGYVP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 755 EGRGI---FPdLTVKENLDLG--SFAAPSRSVSPED-------LERVlgyfpILGDRLGQLAGTLSGGEQQMLAIARALL 822
Cdd:cd03235 75 QRRSIdrdFP-ISVRDVVLMGlyGHKGLFRRLSKADkakvdeaLERV-----GLSELADRQIGELSGGQQQRVLLARALV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRgRVVLSG 888
Cdd:cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR-TVVASG 213
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
671-897 |
1.89e-31 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 126.41 E-value: 1.89e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGW--PRhqaaasaRR 748
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNlpPR-------ER 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPED--------LERVlgyfpilgdRLGQLAG----TLSGGEQQMLA 816
Cdd:COG1118 76 RVGFVFQHYALFPHMTVAENI---AFGLRVRPPSKAEirarveelLELV---------QLEGLADrypsQLSGGQRQRVA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 817 IARALLSRPRLLMLDEPsLG-----LAPLISQQvfnMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPAD 891
Cdd:COG1118 144 LARALAVEPEVLLLDEP-FGaldakVRKELRRW---LRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPD 219
|
....*.
gi 2045876399 892 EVAANP 897
Cdd:COG1118 220 EVYDRP 225
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
653-899 |
4.69e-31 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 130.72 E-value: 4.69e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 653 DPVLETPSSSDRQGSEAL-------LRLVGVSAGYG--VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAD 723
Cdd:COG2274 449 DDILDLPPEREEGRSKLSlprlkgdIELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPT 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 724 SGDLSWEGEPLSGWPRhqaaASARRGIGHIPEGRGIFPDlTVKENLDLGsfaapSRSVSPEDLERVL------------- 790
Cdd:COG2274 529 SGRILIDGIDLRQIDP----ASLRRQIGVVLQDVFLFSG-TIRENITLG-----DPDATDEEIIEAArlaglhdfiealp 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 791 -GYFPILGDRlgqlAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIAdSGVSILLVEQnaRAS 869
Cdd:COG2274 599 mGYDTVVGEG----GSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLL-KGRTVIIIAH--RLS 671
|
250 260 270
....*....|....*....|....*....|.
gi 2045876399 870 -LALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:COG2274 672 tIRLADRIIVLDKGRIVEDGTHEELLARKGL 702
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
670-893 |
4.69e-31 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 122.53 E-value: 4.69e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasARRg 749
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWEL---ARR- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 ighipegRGIFP-------DLTVKENLDLGsfAAPSRSVSPEDLERVLGYFPILGdrLGQLAG----TLSGGEQQMLAIA 818
Cdd:COG4559 77 -------RAVLPqhsslafPFTVEEVVALG--RAPHGSSAAQDRQIVREALALVG--LAHLAGrsyqTLSGGEQQRVQLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 819 RALL-------SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLV--EQNarasLAL--ADRAYVLSRGRVVLS 887
Cdd:COG4559 146 RVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVlhDLN----LAAqyADRILLLHQGRLVAQ 221
|
....*.
gi 2045876399 888 GPADEV 893
Cdd:COG4559 222 GTPEEV 227
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
671-883 |
5.85e-31 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 119.41 E-value: 5.85e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYG--VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaaSARR 748
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE----SLRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDlTVKENLdlgsfaapsrsvspedlervlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSRPRLL 828
Cdd:cd03228 77 NIAYVPQDPFLFSG-TIRENI-------------------------------------LSGGQRQRIAIARALLRDPPIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTIADsGVSILLVEQNaRASLALADRAYVLSRGR 883
Cdd:cd03228 119 ILDEATSALDPETEALILEALRALAK-GKTVIVIAHR-LSTIRDADRIIVLDDGR 171
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
668-897 |
8.69e-31 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 127.71 E-value: 8.69e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGY--GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAD---SGDLSWEGEPLSGWPRHQA 742
Cdd:COG1123 2 TPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 743 AasarRGIGHIP-EGRGIFPDLTVKENLdlgSFAAPSRSVSPED-LERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIA 818
Cdd:COG1123 82 G----RRIGMVFqDPMTQLNPVTVGDQI---AEALENLGLSRAEaRARVLELLEAVGleRRLDRYPHQLSGGQRQRVAIA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 819 RALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG1123 155 MALALDPDLLIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAP 234
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
667-888 |
1.13e-30 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 124.17 E-value: 1.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRhqaaaSA 746
Cdd:PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR-----LA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGIFPDLTVKENLDL-----GSFAAPSRSVSPEDLErvlgyFPILGDRLGQLAGTLSGGEQQMLAIARAL 821
Cdd:PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVfgryfGMSTREIEAVIPSLLE-----FARLESKADARVSDLSGGMKRRLTLARAL 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
651-893 |
1.16e-30 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 127.07 E-value: 1.16e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 651 VADPVLETPSSSDRQGSEALLRLVGVSA-GYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSW 729
Cdd:COG3845 238 VGREVLLRVEKAPAEPGEVVLEVENLSVrDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRL 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 730 EGEPLSGWPRHQAaasARRGIGHIPE---GRGIFPDLTVKENLDLGSFAAPSRSVSP--------EDLERVLGYFPILGD 798
Cdd:COG3845 318 DGEDITGLSPRER---RRLGVAYIPEdrlGRGLVPDMSVAENLILGRYRRPPFSRGGfldrkairAFAEELIEEFDVRTP 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 799 RLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL---ApliSQQVFNMMRTIADSGVSILLVeqnaraS------ 869
Cdd:COG3845 395 GPDTPARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLdvgA---IEFIHQRLLELRDAGAAVLLI------Sedldei 465
|
250 260
....*....|....*....|....
gi 2045876399 870 LALADRAYVLSRGRVVLSGPADEV 893
Cdd:COG3845 466 LALSDRIAVMYEGRIVGEVPAAEA 489
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
669-897 |
1.19e-30 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 124.03 E-value: 1.19e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPrhqaaaSARR 748
Cdd:COG3839 2 ASLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLP------PKDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPEDLER-------VLGyfpiLGDRLGQLAGTLSGGEQQMLAIARAL 821
Cdd:COG3839 76 NIAMVFQSYALYPHMTVYENI---AFPLKLRKVPKAEIDRrvreaaeLLG----LEDLLDRKPKQLSGGQRQRVALGRAL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 822 LSRPRLLMLDEPslgL----APLISQqvfnmMRT-IAD----SGVSILLV--EQnARAsLALADRAYVLSRGRVVLSGPA 890
Cdd:COG3839 149 VREPKVFLLDEP---LsnldAKLRVE-----MRAeIKRlhrrLGTTTIYVthDQ-VEA-MTLADRIAVMNDGRIQQVGTP 218
|
....*..
gi 2045876399 891 DEVAANP 897
Cdd:COG3839 219 EELYDRP 225
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
671-898 |
1.75e-30 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 120.52 E-value: 1.75e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaasarRGI 750
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE------RNV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDL--ERVLGYFpilgdRLGQLAG-------TLSGGEQQMLAIARAL 821
Cdd:cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEirAKVHELL-----KLVQLDWladrypaQLSGGQRQRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
671-898 |
1.96e-30 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 120.03 E-value: 1.96e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaasaRRGI 750
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH------KRPV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPEDL-ERVLGYFPILgdRLGQLAG----TLSGGEQQMLAIARALLSRP 825
Cdd:cd03300 75 NTVFQNYALFPHLTVFENI---AFGLRLKKLPKAEIkERVAEALDLV--QLEGYANrkpsQLSGGQQQRVAIARALVNEP 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 826 RLLMLDEPSLGL-APLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:cd03300 150 KVLLLDEPLGALdLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
671-885 |
5.59e-30 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 118.34 E-value: 5.59e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVE----PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprhqaaasA 746
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---------P 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGIFPDLTVKENLDLG-SFAAPSRSvspEDLERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARALLS 823
Cdd:cd03293 72 GPDRGYVFQQDALLPWLTVLDNVALGlELQGVPKA---EARERAEELLELVGlsGFENAYPHQLSGGMRQRVALARALAV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFN-MMRTIADSGVSILLVEQNARASLALADRAYVLSR--GRVV 885
Cdd:cd03293 149 DPDVLLLDEPFSALDALTREQLQEeLLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIV 213
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
671-888 |
9.13e-30 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 117.59 E-value: 9.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVlrELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPlsgwprHQAAASARRGI 750
Cdd:cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVD------VTAAPPADRPV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGsfAAPSRSVSPEDLERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARALLSRPRLL 828
Cdd:cd03298 73 SMLFQENNLFAHLTVEQNVGLG--LSPGLKLTAEDRQAIEVALARVGlaGLEKRLPGELSGGERQRVALARVLVRDKPVL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03298 151 LLDEPFAALDPALRAEMLDLVLDLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
671-885 |
2.29e-29 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 116.59 E-value: 2.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPrhqaaaSARRGI 750
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP------PKDRDI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPEDL-ERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARALLSRPRL 827
Cdd:cd03301 75 AMVFQNYALYPHMTVYDNI---AFGLKLRKVPKDEIdERVREVAELLQieHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 828 LMLDEPSLGL-APLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:cd03301 152 FLMDEPLSNLdAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
671-891 |
2.42e-29 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 117.42 E-value: 2.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEP--LSGWPRHQAAASARR 748
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHfdFSKTPSDKAIRELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENLdlgsFAAPSRS---VSPEDLERVLGYFPILgdRLGQLAGT----LSGGEQQMLAIARAL 821
Cdd:PRK11124 83 NVGMVFQQYNLWPHLTVQQNL----IEAPCRVlglSKDQALARAEKLLERL--RLKPYADRfplhLSGGQQQRVAIARAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPAD 891
Cdd:PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
654-896 |
2.63e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 123.71 E-value: 2.63e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 654 PVLETPSSSDRQGSEAL-------LRLVGVSAGYGVE-PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSG 725
Cdd:COG4988 313 ALLDAPEPAAPAGTAPLpaagppsIELEDVSFSYPGGrPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSG 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 726 DLSWEGEPLSGWPRhqaaASARRGIGHIPEGRGIFPDlTVKENLDLGSFAApsrsvSPEDLERVL--------------G 791
Cdd:COG4988 393 SILINGVDLSDLDP----ASWRRQIAWVPQNPYLFAG-TIRENLRLGRPDA-----SDEELEAALeaagldefvaalpdG 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 792 YFPILGDRlgqlAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADsGVSILLVEQNArASLA 871
Cdd:COG4988 463 LDTPLGEG----GRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK-GRTVILITHRL-ALLA 536
|
250 260
....*....|....*....|....*
gi 2045876399 872 LADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:COG4988 537 QADRILVLDDGRIVEQGTHEELLAK 561
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
666-888 |
3.43e-29 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 118.75 E-value: 3.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 666 GSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaas 745
Cdd:PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 ARRGIGHIPEGRGIFPDLTVKENLDL-----GSFAAPSRSVSPEDLErvlgyFPILGDRLGQLAGTLSGGEQQMLAIARA 820
Cdd:PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVfgryfGLSAAAARALVPPLLE-----FAKLENKADAKVGELSGGMKRRLTLARA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 821 LLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
670-885 |
7.79e-29 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 115.30 E-value: 7.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGY----GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAs 745
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 ARRGIGHIPE--GRGIFPDLTVKEnldlgSFAAPSRSVSP----EDLERVLGY----FPILGDRLGQLAGTLSGGEQQML 815
Cdd:cd03257 80 RRKEIQMVFQdpMSSLNPRMTIGE-----QIAEPLRIHGKlskkEARKEAVLLllvgVGLPEEVLNRYPHELSGGQRQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 816 AIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
671-897 |
9.32e-29 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 115.48 E-value: 9.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPrhqaAASARRG 749
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD----PVELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLDLgsfaAPSRSVSPED--LERVLGYFPILGDRLGQLAG----TLSGGEQQMLAIARALLS 823
Cdd:cd03295 77 IGYVIQQIGLFPHMTVEENIAL----VPKLLKWPKEkiRERADELLALVGLDPAEFADryphELSGGQQQRVGVARALAA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 824 RPRLLMLDEPSLGLAPL----ISQQVFNMMRTIadsGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:cd03295 153 DPPLLLMDEPFGALDPItrdqLQEEFKRLQQEL---GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
671-888 |
1.21e-28 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 114.21 E-value: 1.21e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGeIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRhqaaaSARRGI 750
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQ-----KLRRRI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDlgsFAAPSRSVSPED--------LERVLgyfpiLGDRLGQLAGTLSGGEQQMLAIARALL 822
Cdd:cd03264 75 GYLPQEFGVYPNFTVREFLD---YIAWLKGIPSKEvkarvdevLELVN-----LGDRAKKKIGSLSGGMRRRVGIAQALV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSIL---LVEQNAraslALADRAYVLSRGRVVLSG 888
Cdd:cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILsthIVEDVE----SLCNQVAVLNKGKLVFEG 211
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
671-893 |
1.65e-28 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 114.59 E-value: 1.65e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPA-----DSGDLSWEGEPLSGWPrhQAAAS 745
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIYDLD--VDVLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 ARRGIGHIPEGRGIFPdLTVKENLDLGSFAAPSRSVSPED------LERVlGYFPILGDRLGqlAGTLSGGEQQMLAIAR 819
Cdd:cd03260 79 LRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDerveeaLRKA-ALWDEVKDRLH--ALGLSGGQQQRLCLAR 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSgVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:cd03260 155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
671-891 |
3.38e-28 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 113.95 E-value: 3.38e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGE--PLSGWPRHQAAASARR 748
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENLdlgsFAAP------SRSVSPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALL 822
Cdd:COG4161 83 KVGMVFQQYNLWPHLTVMENL----IEAPckvlglSKEQAREKAMKLLARLR-LTDKADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPAD 891
Cdd:COG4161 158 MEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDAS 226
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
688-888 |
4.78e-28 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 112.77 E-value: 4.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 688 ELDLTVgKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGHIPEGRGIFPDLTVKE 767
Cdd:cd03297 16 KIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 768 NLDLG--SFAAPSRSVSPEDLERVLGYFPILGDRLGQLagtlSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQV 845
Cdd:cd03297 95 NLAFGlkRKRNREDRISVDELLDLLGLDHLLNRYPAQL----SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2045876399 846 FNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03297 171 LPELKQIkKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
631-833 |
1.76e-27 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 117.86 E-value: 1.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 631 FRERRAARAHGLEIgPERETVADPVLETPSSSDRQgseaLLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKS 710
Cdd:COG0488 281 SRIKALEKLEREEP-PRRDKTVEIRFPPPERLGKK----VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKS 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 711 TVLRTISGVIPADSGDLSWeGEPLSgwprhqaaasarrgIGHIPEGRGIF-PDLTVKENLdlgsfaapsRSVSPEDLER- 788
Cdd:COG0488 356 TLLKLLAGELEPDSGTVKL-GETVK--------------IGYFDQHQEELdPDKTVLDEL---------RDGAPGGTEQe 411
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2045876399 789 ---VLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:COG0488 412 vrgYLGRFLFSGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEP 459
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
670-898 |
3.09e-27 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 110.75 E-value: 3.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVS----AGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAs 745
Cdd:cd03258 1 MIELKNVSkvfgDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 ARRGIGHIPEGRGIFPDLTVKENLDLG-SFAAPSRSVSPEDLERVLGyFPILGDRLGQLAGTLSGGEQQMLAIARALLSR 824
Cdd:cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPlEIAGVPKAEIEERVLELLE-LVGLEDKADAYPAQLSGGQKQRVGIARALANN 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 825 PRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:cd03258 159 PKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
669-893 |
6.70e-27 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 110.63 E-value: 6.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAasARR 748
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA--RRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIghIPEGRGI-FPdLTVKENLDLGsfAAPSRSVSPED-------LERVlgyfpilgdRLGQLAG----TLSGGEQQMLA 816
Cdd:PRK13548 79 AV--LPQHSSLsFP-FTVEEVVAMG--RAPHGLSRAEDdalvaaaLAQV---------DLAHLAGrdypQLSGGEQQRVQ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 817 IARALL------SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS---GVSILLVEQNARAslALADRAYVLSRGRVVLS 887
Cdd:PRK13548 145 LARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHErglAVIVVLHDLNLAA--RYADRIVLLHQGRLVAD 222
|
....*.
gi 2045876399 888 GPADEV 893
Cdd:PRK13548 223 GTPAEV 228
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
684-883 |
1.38e-26 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 108.49 E-value: 1.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIGHIPEGRGIFPDL 763
Cdd:TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL-LRRRIGVVFQDFRLLPDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKEN--LDLGSFAAPSRSVsPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLI 841
Cdd:TIGR02673 95 TVYENvaLPLEVRGKKEREI-QRRVGAALRQVG-LEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2045876399 842 SQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGR 883
Cdd:TIGR02673 173 SERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
685-885 |
1.67e-26 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 107.73 E-value: 1.67e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRhqaaasaRRGIGHIPE--GRGIFPD 762
Cdd:cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER-------RKSIGYVMQdvDYQLFTD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLDLGSFAAPSrsvSPEDLERVLGYFPILG--DRLGQlagTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPL 840
Cdd:cd03226 88 -SVREELLLGLKELDA---GNEQAETVLKDLDLYAlkERHPL---SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2045876399 841 ISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:cd03226 161 NMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
681-898 |
1.50e-25 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 106.96 E-value: 1.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 681 GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGHIPEGRGIF 760
Cdd:cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 PDLTVKEN----LDL-GSFAAPSRSVSPEDLERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSL 835
Cdd:cd03294 115 PHRTVLENvafgLEVqGVPRAEREERAAEALELV-G----LEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 836 GLAPLISQQVFN-MMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:cd03294 190 ALDPLIRREMQDeLLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPA 253
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
667-892 |
1.59e-25 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 105.98 E-value: 1.59e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVS----AGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQA 742
Cdd:COG4181 5 SAPIIELRGLTktvgTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDAR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 743 AASARRGIGHIpegrgiF------PDLTVKEN----LDLGSfAAPSRSVSPEDLERVlGyfpiLGDRLGQLAGTLSGGEQ 812
Cdd:COG4181 85 ARLRARHVGFV------FqsfqllPTLTALENvmlpLELAG-RRDARARARALLERV-G----LGHRLDHYPAQLSGGEQ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 813 QMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARasLAL-ADRAYVLSRGRVVLSGPA 890
Cdd:COG4181 153 QRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELnRERGTTLVLVTHDPA--LAArCDRVLRLRAGRLVEDTAA 230
|
..
gi 2045876399 891 DE 892
Cdd:COG4181 231 TA 232
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
676-893 |
2.94e-25 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 105.00 E-value: 2.94e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 676 VSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaaSARRGIGHIP 754
Cdd:cd03254 8 VNFSYdEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK----SLRSMIGVVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 755 EGRGIFPDlTVKENLDLGSFAAP-------SRSVSPEDLERVL--GYFPILGDRlgqlAGTLSGGEQQMLAIARALLSRP 825
Cdd:cd03254 84 QDTFLFSG-TIMENIRLGRPNATdeevieaAKEAGAHDFIMKLpnGYDTVLGEN----GGNLSQGERQLLAIARAMLRDP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEqnaRASLAL-ADRAYVLSRGRVVLSGPADEV 893
Cdd:cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH---RLSTIKnADKILVLDDGKIIEEGTHDEL 224
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
690-892 |
3.33e-25 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 105.05 E-value: 3.33e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 690 DLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPlsgwprHQAAASARRGIGHIPEGRGIFPDLTVKENL 769
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD------HTTTPPSRRPVSMLFQENNLFSHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 770 DLGsfAAPSRSVSP------EDLERVLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQ 843
Cdd:PRK10771 93 GLG--LNPGLKLNAaqreklHAIARQMG----IEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2045876399 844 QVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADE 892
Cdd:PRK10771 167 EMLTLVSQVCQErQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
673-876 |
5.24e-25 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 103.46 E-value: 5.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 673 LVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGH 752
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 753 IPEGRGIFPDLTVKENLDLG-SFAAPSRSVSPEDLERVLGYFPILGDrLGQLAGTLSGGEQQMLAIARALLSRPRLLMLD 831
Cdd:TIGR03608 81 LFQNFALIENETVEENLDLGlKYKKLSKKEKREKKKEALEKVGLNLK-LKQKIYELSGGEQQRVALARAILKPPPLILAD 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2045876399 832 EPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNarasLALADRA 876
Cdd:TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD----PEVAKQA 200
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
684-884 |
5.89e-25 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 103.64 E-value: 5.89e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRhQAAASARRGIGHIPEGRGIFPDL 763
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRG-RAIPYLRRKIGVVFQDFRLLPDR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLdlgSFAAPSRSVSPEDL-ERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPL 840
Cdd:cd03292 94 NVYENV---AFALEVTGVPPREIrKRVPAALELVGlsHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2045876399 841 ISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:cd03292 171 TTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
674-888 |
6.02e-25 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 103.01 E-value: 6.02e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 674 VGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISG--VIPADSGDLSWEGEPLSgwprhqaAASARRGIG 751
Cdd:cd03213 13 VKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLD-------KRSFRKIIG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 752 HIPEGRGIFPDLTVKENLDlgsFAAPSRSvspedlervlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSRPRLLMLD 831
Cdd:cd03213 86 YVPQDDILHPTLTVRETLM---FAAKLRG--------------------------LSGGERKRVSIALELVSNPSLLFLD 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 832 EPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASL-ALADRAYVLSRGRVVLSG 888
Cdd:cd03213 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIfELFDKLLLLSQGRVIYFG 194
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
671-893 |
2.68e-24 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 103.00 E-value: 2.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSagygVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAdSGDLSWEGEPLSGWPrhqAAASARRgi 750
Cdd:COG4138 1 LQLNDVA----VAGRLGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLLPG-QGEILLNGRPLSDWS---AAELARH-- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 ghipegRGIFP-------DLTVKENLDLGSFAAPSRSVSPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALL- 822
Cdd:COG4138 71 ------RAYLSqqqsppfAMPVFQYLALHQPAGASSEAVEQLLAQLAEALG-LEDKLSRPLTQLSGGEWQRVRLAAVLLq 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 823 ------SRPRLLMLDEPslgLAPL-ISQQV--FNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:COG4138 144 vwptinPEGQLLLLDEP---MNSLdVAQQAalDRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEV 220
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
670-897 |
4.12e-24 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 105.41 E-value: 4.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaasarRG 749
Cdd:PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN------RH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPEDLE-RVLGYFPILgdRLGQLAG----TLSGGEQQMLAIARALLSR 824
Cdd:PRK09452 88 VNTVFQSYALFPHMTVFENV---AFGLRMQKTPAAEITpRVMEALRMV--QLEEFAQrkphQLSGGQQQRVAIARAVVNK 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 825 PRLLMLDEPSLGLAPLISQQVFN----MMRTIadsGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK09452 163 PKVLLLDESLSALDYKLRKQMQNelkaLQRKL---GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
655-898 |
7.65e-24 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 104.53 E-value: 7.65e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 655 VLETPSSSDRQGSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPL 734
Cdd:PRK11607 4 AIPRPQAKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 735 SGWPRHQaaasarRGIGHIPEGRGIFPDLTVKENLDLGsfAAPSRSVSPEDLERVLGYFPILgdRLGQLAG----TLSGG 810
Cdd:PRK11607 84 SHVPPYQ------RPINMMFQSYALFPHMTVEQNIAFG--LKQDKLPKAEIASRVNEMLGLV--HMQEFAKrkphQLSGG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 811 EQQMLAIARALLSRPRLLMLDEPSLGL-APLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGP 889
Cdd:PRK11607 154 QRQRVALARSLAKRPKLLLLDEPMGALdKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
....*....
gi 2045876399 890 ADEVAANPS 898
Cdd:PRK11607 234 PEEIYEHPT 242
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
655-896 |
1.95e-23 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 105.63 E-value: 1.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 655 VLETPSS-SDRQGSEAL------LRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGD 726
Cdd:COG1132 317 LLDEPPEiPDPPGAVPLppvrgeIEFENVSFSYpGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGR 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 727 LSWEGEPLSGWPRhqaaASARRGIGHIPEGRGIFpDLTVKENLDLGSFAApsrsvSPEDLERVL--------------GY 792
Cdd:COG1132 397 ILIDGVDIRDLTL----ESLRRQIGVVPQDTFLF-SGTIRENIRYGRPDA-----TDEEVEEAAkaaqahefiealpdGY 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 793 FPILGDRlgqlAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIAdSGVSILLVEQnaR-ASLA 871
Cdd:COG1132 467 DTVVGER----GVNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLM-KGRTTIVIAH--RlSTIR 539
|
250 260
....*....|....*....|....*
gi 2045876399 872 LADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:COG1132 540 NADRILVLDDGRIVEQGTHEELLAR 564
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
668-893 |
2.84e-23 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 104.87 E-value: 2.84e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEplsGWPRHQAAASAR 747
Cdd:PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI---NYNKLDHKLAAQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIPEGRGIFPDLTVKENLDLGSFaaPSRS---VSPEDLERVLGYFPILGDRLG------QLAGTLSGGEQQMLAIA 818
Cdd:PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRH--LTKKvcgVNIIDWREMRVRAAMMLLRVGlkvdldEKVANLSISHKQMLEIA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 819 RALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
685-897 |
2.89e-23 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 99.82 E-value: 2.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTI-------SGVIPAdsGDLSWEG-EPLSGwpRHQAAASARRGIGHIPEG 756
Cdd:PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCInlleqpeAGTIRV--GDITIDTaRSLSQ--QKGLIRQLRQHVGFVFQN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 757 RGIFPDLTVKENLDLGSFAapsrsVSPEDLERVLGYFPILGDRLGqLAGT-------LSGGEQQMLAIARALLSRPRLLM 829
Cdd:PRK11264 94 FNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELLAKVG-LAGKetsyprrLSGGQQQRVAIARALAMRPEVIL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 830 LDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK11264 168 FDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
670-897 |
3.17e-23 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 101.67 E-value: 3.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVE----PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPA---DSGDLSWEGEPLSGWPRhqa 742
Cdd:COG0444 1 LLEVRNLKVYFPTRrgvvKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSE--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 743 aaSARRGIghipegRG-----IFPD--------LTVKEnldlgSFAAP---SRSVSPEDL-ERVLGYFPILG-----DRL 800
Cdd:COG0444 78 --KELRKI------RGreiqmIFQDpmtslnpvMTVGD-----QIAEPlriHGGLSKAEArERAIELLERVGlpdpeRRL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 801 GQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVL 879
Cdd:COG0444 145 DRYPHELSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLqRELGLAILFITHDLGVVAEIADRVAVM 224
|
250
....*....|....*...
gi 2045876399 880 SRGRVVLSGPADEVAANP 897
Cdd:COG0444 225 YAGRIVEEGPVEELFENP 242
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
676-892 |
1.19e-22 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 97.69 E-value: 1.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 676 VSAGYGVE-PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaaSARRGIGHIP 754
Cdd:cd03253 6 VTFAYDPGrPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLD----SLRRAIGVVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 755 EGRGIFPDlTVKENLDLGSFaapsrSVSPEDLERVL--------------GYFPILGDRlgqlaGT-LSGGEQQMLAIAR 819
Cdd:cd03253 82 QDTVLFND-TIGYNIRYGRP-----DATDEEVIEAAkaaqihdkimrfpdGYDTIVGER-----GLkLSGGEKQRVAIAR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEqnaRAS-LALADRAYVLSRGRVVLSGPADE 892
Cdd:cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAH---RLStIVNADKIIVLKDGRIVERGTHEE 221
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
668-895 |
1.27e-22 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 103.29 E-value: 1.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGY--GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAas 745
Cdd:COG4618 328 KGRLSVENLTVVPpgSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELG-- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 arRGIGHIPEGRGIFPDlTVKENLdlgsfaAPSRSVSPEDL----------ERVL----GYfpilgD-RLGQLAGTLSGG 810
Cdd:COG4618 406 --RHIGYLPQDVELFDG-TIAENI------ARFGDADPEKVvaaaklagvhEMILrlpdGY-----DtRIGEGGARLSGG 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 811 EQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARAsLALADRAYVLSRGRVVLSGPA 890
Cdd:COG4618 472 QRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPSL-LAAVDKLLVLRDGRVQAFGPR 550
|
....*
gi 2045876399 891 DEVAA 895
Cdd:COG4618 551 DEVLA 555
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
5-274 |
1.38e-22 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 98.48 E-value: 1.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 5 VISGLIVGLLYAIAGLGFVVIYRTSKVLNFAMGGLGAVVAYVASDLIDLGLPYPVVVLLGLLVGGLLG-ALLELAIARPL 83
Cdd:pfam02653 2 ILNILTLASIYAIAALGLTLIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVgLLIGILTLRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 84 RDRPHLTVALATLGALLILEGLVGLRYGFAPQSlapafDRGVGLDVGPISISTNQLFVAGMGLVATVVLFAIVMRTRLGL 163
Cdd:pfam02653 82 INEVIITLLLNLAALGLALFLVTGILGGEGGTS-----GITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 164 GMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTPLTYLSPGSFTIFLLT--AFAAVVLGGFTSVIGVVIGA 241
Cdd:pfam02653 157 ALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGldAIAAVVLGGAGSPIGVVIGS 236
|
250 260 270
....*....|....*....|....*....|...
gi 2045876399 242 LVFGVATNLLLTYLDSSLISTYTFLGVALVLVL 274
Cdd:pfam02653 237 LIIGLVQSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
687-833 |
1.46e-22 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 96.41 E-value: 1.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 687 RELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwpRHQAAASARR--GIGHIPegrGIFPDLT 764
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI----RRQRDEYHQDllYLGHQP---GIKTELT 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 765 VKENLDlgSFAAPSRSVSPEDLERVLGYFPILGdRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:PRK13538 91 ALENLR--FYQRLHGPGDDEALWEALAQVGLAG-FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
607-879 |
1.53e-22 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 102.75 E-value: 1.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 607 LLVLFLAPRGLAGLLERATLaalgFRERRAARAHG------LEIGPERETVADPVLETPSSSdrqgsealLRLVGVSAGY 680
Cdd:TIGR02857 264 LFVLLLAPEFYLPLRQLGAQ----YHARADGVAAAealfavLDAAPRPLAGKAPVTAAPASS--------LEFSGVSVAY 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 681 -GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPrhqaAASARRGIGHIPEGRGI 759
Cdd:TIGR02857 332 pGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD----ADSWRDQIAWVPQHPFL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 FPDlTVKENLDLG----SFAAPSRSVSPEDLERVLGYFPI-LGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:TIGR02857 408 FAG-TIAENIRLArpdaSDAEIREALERAGLDEFVAALPQgLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2045876399 835 LGLAPLISQQVFNMMRTIAdSGVSILLVeQNARASLALADRAYVL 879
Cdd:TIGR02857 487 AHLDAETEAEVLEALRALA-QGRTVLLV-THRLALAALADRIVVL 529
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
671-868 |
4.80e-22 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 95.24 E-value: 4.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAD---SGDLSWEGEPLSGWPRHQaaasar 747
Cdd:COG4136 2 LSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPAEQ------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDLERVLgyfpilgDRLGqLAG-------TLSGGEQQMLAIARA 820
Cdd:COG4136 76 RRIGILFQDDLLFPHLSVGENLAFALPPTIGRAQRRARVEQAL-------EEAG-LAGfadrdpaTLSGGQRARVALLRA 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 821 LLSRPRLLMLDEPSLGL-APL---ISQQVFNMMRtiaDSGVSILLV---EQNARA 868
Cdd:COG4136 148 LLAEPRALLLDEPFSKLdAALraqFREFVFEQIR---QRGIPALLVthdEEDAPA 199
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
670-890 |
5.39e-22 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 100.67 E-value: 5.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADS--GDLSWEGEPLSGwprHQAAASAR 747
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEIYWSGSPLKA---SNIRDTER 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDL-----ERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALL 822
Cdd:TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAmylraKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPA 890
Cdd:TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDM 225
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
665-897 |
7.72e-22 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 96.37 E-value: 7.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 665 QGSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAA 744
Cdd:PRK11831 2 QSVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 745 sARRGIGHIPEGRGIFPDLTVKENLdlgsfAAPSRSVS--PEDLER--VLGYFPILGDRLGQ--LAGTLSGGEQQMLAIA 818
Cdd:PRK11831 82 -VRKRMSMLFQSGALFTDMNVFDNV-----AYPLREHTqlPAPLLHstVMMKLEAVGLRGAAklMPSELSGGMARRAALA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 819 RALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
681-897 |
7.96e-22 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 97.84 E-value: 7.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 681 GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIGHIPEGRGIF 760
Cdd:COG1135 16 GPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRA-ARRKIGMIFQHFNLL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 PDLTVKENLdlgsfAAPSR--SVSPED--------LERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLML 830
Cdd:COG1135 95 SSRTVAENV-----ALPLEiaGVPKAEirkrvaelLELV-G----LSDKADAYPSQLSGGQKQRVGIARALANNPKVLLC 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTIADS-GVSILL-------VEQnaraslaLADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG1135 165 DEATSALDPETTRSILDLLKDINRElGLTIVLithemdvVRR-------ICDRVAVLENGRIVEQGPVLDVFANP 232
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
680-888 |
8.00e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 95.48 E-value: 8.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 680 YGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGE-PLSGWPRHqaaasaRRGIGHIPEGRG 758
Cdd:cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLvPWKRRKKF------LRRIGVVFGQKT 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 759 -IFPDLTVKE---------NLDLGSFAAPSRSVSpEDLErvlgyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLL 828
Cdd:cd03267 105 qLWWDLPVIDsfyllaaiyDLPPARFKKRLDELS-ELLD--------LEELLDTPVRQLSLGQRMRAEIAAALLHEPEIL 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03267 176 FLDEPTIGLDVVAQENIRNFLKEYnRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
667-885 |
1.24e-21 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 99.60 E-value: 1.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGY-GVEpVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPlsgwprhQAAAS 745
Cdd:PRK11288 1 SSPYLSFDGIGKTFpGVK-ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE-------MRFAS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 AR----RGIGHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDL-ERVLGYFPILGDRLGQLA--GTLSGGEQQMLAIA 818
Cdd:PRK11288 73 TTaalaAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLnYEAREQLEHLGVDIDPDTplKYLSIGQRQMVEIA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 819 RALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
661-897 |
1.24e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 95.93 E-value: 1.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 661 SSDRQGSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGdLSWEGEPLSGWP-- 738
Cdd:PRK14271 12 AADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-YRYSGDVLLGGRsi 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 739 -RHQAAASARRGIGHIPEGRGIFPdLTVKENLDLGSFA---APS---RSVSPEDLERVlGYFPILGDRLGQLAGTLSGGE 811
Cdd:PRK14271 91 fNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAhklVPRkefRGVAQARLTEV-GLWDAVKDRLSDSPFRLSGGQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 812 QQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSgVSILLVEQNARASLALADRAYVLSRGRVVLSGPAD 891
Cdd:PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTE 247
|
....*.
gi 2045876399 892 EVAANP 897
Cdd:PRK14271 248 QLFSSP 253
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
684-888 |
1.52e-21 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 94.19 E-value: 1.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRhqaaASARRGIGHIPEGRGIFPDl 763
Cdd:cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP----ADLRRNIGYVPQDVTLFYG- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDLGSfaapsRSVSPEDLERVL--------------GYFPILGDRlGQLagtLSGGEQQMLAIARALLSRPRLLM 829
Cdd:cd03245 93 TLRDNITLGA-----PLADDERILRAAelagvtdfvnkhpnGLDLQIGER-GRG---LSGGQRQAVALARALLNDPPILL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 830 LDEPSLGLAPLISQQVF-NMMRTIADsgvSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03245 164 LDEPTSAMDMNSEERLKeRLRQLLGD---KTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
680-895 |
1.58e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 95.46 E-value: 1.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 680 YGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsaRRGIGHI---PEG 756
Cdd:PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL--RQQVATVfqdPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 757 RGIFPDLtvkeNLDLgSFAAPSRSVSPEDLERVLGYFPILGDRLG---QLAGTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:PRK13638 89 QIFYTDI----DSDI-AFSLRNLGVPEAEITRRVDEALTLVDAQHfrhQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 834 SLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
668-888 |
1.83e-21 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 95.08 E-value: 1.83e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIpadSGDLSWEGE-PLSGWPRHQAAASA 746
Cdd:PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI---TGDKSAGSHiELLGRTVQREGRLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 ------RRGIGHIPEGRGIFPDLTVKENLDLGSFAAPS------RSVSPEDLERVLGYFpilgDRLG------QLAGTLS 808
Cdd:PRK09984 79 rdirksRANTGYIFQQFNLVNRLSVLENVLIGALGSTPfwrtcfSWFTREQKQRALQAL----TRVGmvhfahQRVSTLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 809 GGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLS 887
Cdd:PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDInQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234
|
.
gi 2045876399 888 G 888
Cdd:PRK09984 235 G 235
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
663-888 |
5.44e-21 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 97.38 E-value: 5.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 663 DRQGSEALLRLVGVSaGYGVEPVlrelDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwPRHQA 742
Cdd:PRK10762 250 DKAPGEVRLKVDNLS-GPGVNDV----SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV--TRSPQ 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 743 AASARrGIGHIPEGR---GIFPDLTVKENLDLGSFAAPSRSV-------SPEDLERVLGYFPILGDRLGQLAGTLSGGEQ 812
Cdd:PRK10762 323 DGLAN-GIVYISEDRkrdGLVLGMSVKENMSLTALRYFSRAGgslkhadEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 813 QMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRvvLSG 888
Cdd:PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR--ISG 475
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
680-904 |
5.99e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 93.37 E-value: 5.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 680 YGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSgDLSWEGE-PLSG---WPRHQAAASARRGIGHIPE 755
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE-EARVEGEvRLFGrniYSPDVDPIEVRREVGMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 756 GRGIFPDLTVKENLDLG---SFAAPSRSVSPEDLERVL---GYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLM 829
Cdd:PRK14267 93 YPNPFPHLTIYDNVAIGvklNGLVKSKKELDERVEWALkkaALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILL 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 830 LDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASlALADRAYVLSRGRVVLSGPADEVAANP--SLTGSYL 904
Cdd:PRK14267 173 MDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAA-RVSDYVAFLYLGKLIEVGPTRKVFENPehELTEKYV 248
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
671-893 |
6.46e-21 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 93.15 E-value: 6.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAasarRGI 750
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA----RRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGsfaapsRS--------VSPEDLERVLGYFPI-----LGDRlgqLAGTLSGGEQQMLAI 817
Cdd:PRK11231 79 ALLPQHHLTPEGITVRELVAYG------RSpwlslwgrLSAEDNARVNQAMEQtrinhLADR---RLTDLSGGQRQRAFL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 818 ARALLSRPRLLMLDEPSLGLAplISQQV--FNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK11231 150 AMVLAQDTPVVLLDEPTTYLD--INHQVelMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
684-885 |
7.33e-21 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 93.33 E-value: 7.33e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIGHIPEG--RGIFP 761
Cdd:TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA-FRRDVQLVFQDspSAVNP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKENL-----DLGSFAAPSRSVSPEDLERVLGYFPILGDRLGQlagTLSGGEQQMLAIARALLSRPRLLMLDEPSLG 836
Cdd:TIGR02769 104 RMTVRQIIgeplrHLTSLDESEQKARIAELLDMVGLRSEDADKLPR---QLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2045876399 837 LAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:TIGR02769 181 LDMVLQAVILELLRKLqQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
667-892 |
7.45e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 97.31 E-value: 7.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADS--GDLSWEGEPLsgwprhQAAA 744
Cdd:PRK13549 2 MEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTyeGEIIFEGEEL------QASN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 745 ---SARRGIGHIPEGRGIFPDLTVKENLDLGSFAAP----------SRSvspEDLERVLGyfpiLGDRLGQLAGTLSGGE 811
Cdd:PRK13549 76 irdTERAGIAIIHQELALVKELSVLENIFLGNEITPggimdydamyLRA---QKLLAQLK----LDINPATPVGNLGLGQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 812 QQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPAD 891
Cdd:PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAA 228
|
.
gi 2045876399 892 E 892
Cdd:PRK13549 229 G 229
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
671-888 |
8.67e-21 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 90.45 E-value: 8.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYG--VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhQAAASARR 748
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS-----DLEKALSS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFpDLTVKENLdlgsfaapsrsvspedlervlgyfpilGDRLgqlagtlSGGEQQMLAIARALLSRPRLL 828
Cdd:cd03247 76 LISVLNQRPYLF-DTTLRNNL---------------------------GRRF-------SGGERQRLALARILLQDAPIV 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTIADsGVSILLVEQNARAsLALADRAYVLSRGRVVLSG 888
Cdd:cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTG-IEHMDKILFLENGKIIMQG 178
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
685-888 |
8.94e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 91.95 E-value: 8.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAD---SGDLSWEGEPLSgwpRHQAaasaRRGIGHIPEGRGIFP 761
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGgttSGQILFNGQPRK---PDQF----QKCVAYVRQDDILLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKENLdlgSFAAPSRS-----------VSPEDLERVLGYFPILGDRLGQLagtlSGGEQQMLAIARALLSRPRLLML 830
Cdd:cd03234 95 GLTVRETL---TYTAILRLprkssdairkkRVEDVLLRDLALTRIGGNLVKGI----SGGERRRVSIAVQLLWDPKVLIL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASL-ALADRAYVLSRGRVVLSG 888
Cdd:cd03234 168 DEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLfRLFDRILLLSSGEIVYSG 226
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
686-896 |
9.18e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 94.38 E-value: 9.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEG-EPlsgWPRHQAAAsarRGIGHIPEGRG-IFPDL 763
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGyVP---FKRRKEFA---RRIGVVFGQRSqLWWDL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDLgsFAAPSRsVSPEDLERVLGYFpI----LGDRLGQLAGTLSGGeQQMLA-IARALLSRPRLLMLDEPSLGLA 838
Cdd:COG4586 112 PAIDSFRL--LKAIYR-IPDAEYKKRLDEL-VelldLGELLDTPVRQLSLG-QRMRCeLAAALLHRPKILFLDEPTIGLD 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 839 PLISQQVFNMMRTI-ADSGVSILL-------VEqnaraslALADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:COG4586 187 VVSKEAIREFLKEYnRERGTTILLtshdmddIE-------ALCDRVIVIDHGRIIYDGSLEELKER 245
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
5-280 |
9.33e-21 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 93.46 E-value: 9.33e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 5 VISGLIVGLLYAIAGLGFVVIYRTSKVLNFAMGG---LGAVVAYVASDLID----LGLPYPVVVLLGLLVGGLLGALLEL 77
Cdd:TIGR03409 4 LFSGLSLGSILLLAALGLAITFGQMGVINMAHGEfimIGAYTTYVVQQLFSspglADLYLLIAIPLAFLVSALLGALIER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 78 AIARPLRDRPhLTVALATLGALLILEGLVGLRYGFAPQSL-APAFDRGVGLDVGPISISTNQLFVAGMGLVATVVLFAIV 156
Cdd:TIGR03409 84 TVIRHLYGRP-LDTLLATWGISLILQQAVRSIFGAPNVPVtAPEWLSGGLEITGALSLPYNRLFIIVLALAVLLALALLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 157 MRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTPLTYLSPGSFTIFLLTAFAAVVLGGFTSVIG 236
Cdd:TIGR03409 163 YRTRLGLRVRAVTQNRSMAAALGINTRRVDALTFALGSGIAGVAGVALTLIGNVGPTLGQLYIVDSFLVVVFGGVGSLWG 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2045876399 237 VVIGALVFGVATNLLLTYLDSSLISTYTFLGVALVLVLRPHGIF 280
Cdd:TIGR03409 243 TVVAAFGLGVLNKILEYFTGASLAKVLVLVLIILFLQWRPQGLF 286
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
675-904 |
1.60e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 91.90 E-value: 1.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 675 GVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVI-----PADSGDLSWEGEPLSGWPrhqaAASARRG 749
Cdd:PRK14247 8 DLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIFKMD----VIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLDLG---SFAAPSRSVSPEDLERVLGYFPI---LGDRLGQLAGTLSGGEQQMLAIARALLS 823
Cdd:PRK14247 84 VQMVFQIPNPIPNLSIFENVALGlklNRLVKSKKELQERVRWALEKAQLwdeVKDRLDAPAGKLSGGQQQRLCIARALAF 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFNMMRTIADSgVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP--SLTG 901
Cdd:PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPrhELTE 242
|
...
gi 2045876399 902 SYL 904
Cdd:PRK14247 243 KYV 245
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
672-903 |
1.63e-20 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 92.07 E-value: 1.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 672 RLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPrhqAAASARR-GI 750
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTP---SRELAKRlAI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 ----GHIPegrgifPDLTVKENLDLGSFaaP-SRS-VSPEDLERV---LGYFpilgdRLGQLAG----TLSGGEQQMLAI 817
Cdd:COG4604 80 lrqeNHIN------SRLTVRELVAFGRF--PySKGrLTAEDREIIdeaIAYL-----DLEDLADryldELSGGQRQRAFI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 818 ARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIAD-SGVSILLV--EQNArASlALADRAYVLSRGRVVLSGPADEVA 894
Cdd:COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADeLGKTVVIVlhDINF-AS-CYADHIVAMKDGRVVAQGTPEEII 224
|
....*....
gi 2045876399 895 ANPSLTGSY 903
Cdd:COG4604 225 TPEVLSDIY 233
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
671-832 |
1.67e-20 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 91.52 E-value: 1.67e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYG--VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWprhqAAASARR 748
Cdd:cd03251 1 VEFKNVTFRYPgdGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY----TLASLRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDlTVKENLDLGSFAApsrsvSPEDLERVL--------------GYFPILGDRlgqlAGTLSGGEQQM 814
Cdd:cd03251 77 QIGLVSQDVFLFND-TVAENIAYGRPGA-----TREEVEEAAraanahefimelpeGYDTVIGER----GVKLSGGQRQR 146
|
170
....*....|....*...
gi 2045876399 815 LAIARALLSRPRLLMLDE 832
Cdd:cd03251 147 IAIARALLKDPPILILDE 164
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
685-895 |
1.76e-20 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 91.68 E-value: 1.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEplSGWPrhqaaasarrgIGHipeGRGIFPDLT 764
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGR--VSAL-----------LEL---GAGFHPELT 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 765 VKEN-----LDLGsfaapsrsVSPEDLERVLGY---FPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEpslG 836
Cdd:COG1134 105 GRENiylngRLLG--------LSRKEIDEKFDEiveFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDE---V 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 837 LA---PLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:COG1134 174 LAvgdAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIA 235
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
669-885 |
1.80e-20 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 92.23 E-value: 1.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGYGV----EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprhqaaA 744
Cdd:COG4525 2 SMLTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG-------P 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 745 SARRGIghIPEGRGIFPDLTVKENLDLG-SFAAPSRSvspEDLERVLGYFPILGdrLGQLAG----TLSGGEQQMLAIAR 819
Cdd:COG4525 75 GADRGV--VFQKDALLPWLNVLDNVAFGlRLRGVPKA---ERRARAEELLALVG--LADFARrriwQLSGGMRQRVGIAR 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSR--GRVV 885
Cdd:COG4525 148 ALAADPRFLLMDEPFGALDALTREQMQELLLDVwQRTGKGVFLITHSVEEALFLATRLVVMSPgpGRIV 216
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
671-891 |
2.38e-20 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 91.66 E-value: 2.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwprhqaaASARRGI 750
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL---------AEAREDT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGsFAAPSRSVSPEDLERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLML 830
Cdd:PRK11247 84 RLMFQDARLLPWKKVIDNVGLG-LKGQWRDAALQALAAV-G----LADRANEWPAALSGGQKQRVALARALIHRPGLLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPAD 891
Cdd:PRK11247 158 DEPLGALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
675-833 |
2.38e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 95.52 E-value: 2.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 675 GVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGeplsgwprhqaaaSARrgIGHIP 754
Cdd:COG0488 3 NLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK-------------GLR--IGYLP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 755 EGRGIFPDLTVKENL---------------------------------------DLGSFAAPSRsvspedLERVLGYFPI 795
Cdd:COG0488 68 QEPPLDDDLTVLDTVldgdaelraleaeleeleaklaepdedlerlaelqeefeALGGWEAEAR------AEEILSGLGF 141
|
170 180 190
....*....|....*....|....*....|....*...
gi 2045876399 796 LGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:COG0488 142 PEEDLDRPVSELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
650-896 |
3.53e-20 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 95.66 E-value: 3.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 650 TVADPVLETPSSSDRQGSEALLRLVGVSAGY--GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDL 727
Cdd:PRK11160 318 TEQKPEVTFPTTSTAAADQVSLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 728 SWEGEPLSGWPRhqaaASARRGIGHIPEGRGIFPDlTVKENLDLgsfAAPSrsVSPEDLERVL---GYFPILGDR----- 799
Cdd:PRK11160 398 LLNGQPIADYSE----AALRQAISVVSQRVHLFSA-TLRDNLLL---AAPN--ASDEALIEVLqqvGLEKLLEDDkglna 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 800 -LGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIAdSGVSILLVEQNARAsLALADRAYV 878
Cdd:PRK11160 468 wLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-LEQFDRICV 545
|
250
....*....|....*...
gi 2045876399 879 LSRGRVVLSGPADEVAAN 896
Cdd:PRK11160 546 MDNGQIIEQGTHQELLAQ 563
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
13-281 |
4.11e-20 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 90.97 E-value: 4.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 13 LLYAIAGLGFVVIYRTSKVLNFAMGGLGAVVAYVASDL-IDLGLPYPVVVLLGLLVGGLLGALlelaIARPLRDRPHLTV 91
Cdd:cd06581 2 LIYAILALGLNLLLGYAGQLSLGHAAFFGIGAYTAALLaTRLGLPFWLALLAAGLVAALVGLL----LGLPALRLRGVYF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 92 ALATLGALLILEGLV----GLRYGFAPQSLAPAFDRGVGLDVGPISIstnqLFVAGMGLVATVVLFAIVMRTRLGLGMRA 167
Cdd:cd06581 78 AIATLAFAEIVRLLAlnwsSLTGGSNGLSGIPPPLLGGLLLSSPLAF----YYLVLAVLLLVLLLLRRLVRSPFGRALRA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 168 VSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLA-ALLVTPLTYLSPGSFTIFL-LTAFAAVVLGGFTSVIGVVIGALVFG 245
Cdd:cd06581 154 IRENEVAAEALGINVTRYKLLAFALSAALAGLAgALYAHYLGFVSPESFGFALsIELLLMVVLGGLGSLLGPVLGAALLV 233
|
250 260 270
....*....|....*....|....*....|....*...
gi 2045876399 246 VATNLLLTYLDSSListYTFLGVALVLVL--RPHGIFG 281
Cdd:cd06581 234 LLPELLRSLGPGLR---LLVFGLLLILVVlfLPRGLVG 268
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
685-893 |
4.57e-20 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 89.12 E-value: 4.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGViPA---DSGDLSWEGEPLSGWPRHQaaaSARRGIGHipegrgifp 761
Cdd:cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PKyevTEGEILFKGEDITDLPPEE---RARLGIFL--------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 dltvkenldlgSFAAPSR--SVSPEDLERVLGYfpilgdrlgqlagTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAP 839
Cdd:cd03217 82 -----------AFQYPPEipGVKNADFLRYVNE-------------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 840 LISQQVFNMMRTIADSGVSILLVEQNAR-ASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:cd03217 138 DALRLVAEVINKLREEGKSVLIITHYQRlLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
671-903 |
4.64e-20 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 93.75 E-value: 4.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprhQAAASARRGI 750
Cdd:PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA----LSARAASRRV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPEDLERVLGYFPILGDRLGQLAG----TLSGGEQQMLAIARALLSRPR 826
Cdd:PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADrpvtSLSGGERQRVLLARALAQATP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 827 LLMLDEPSLGLAplISQQV--FNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSLTGSY 903
Cdd:PRK09536 160 VLLLDEPTASLD--INHQVrtLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAF 236
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
685-899 |
5.99e-20 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 89.85 E-value: 5.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprHQAAASARRGIGHIPEGRGIFpDLT 764
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA----LADPAWLRRQVGVVLQENVLF-NRS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 765 VKENLDLGSFAAPSRSVSPED---------LERVLGYFPILGDRlgqlAGTLSGGEQQMLAIARALLSRPRLLMLDEPSL 835
Cdd:cd03252 92 IRDNIALADPGMSMERVIEAAklagahdfiSELPEGYDTIVGEQ----GAGLSGGQRQRIAIARALIHNPRILIFDEATS 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 836 GLAPLISQQVFNMMRTIADSGVSILLVEQnaRASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:cd03252 168 ALDYESEHAIMRNMHDICAGRTVIIIAHR--LSTVKNADRIIVMEKGRIVEQGSHDELLAENGL 229
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
685-834 |
7.16e-20 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 89.45 E-value: 7.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGHIPEGRGIFPDLT 764
Cdd:PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 765 VKENLDL-----GSFAAPSRSVSPEDLERvLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:PRK10584 105 ALENVELpallrGESSRQSRNGAKALLEQ-LG----LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
670-885 |
7.88e-20 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 90.14 E-value: 7.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprhqaaASARRG 749
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-------PGAERG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IghIPEGRGIFPDLTVKEN----LDLGSFAAPSRSVSPEDLERVLGYFPILGDRLGQlagtLSGGEQQMLAIARALLSRP 825
Cdd:PRK11248 74 V--VFQNEGLLPWRNVQDNvafgLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQ----LSGGQRQRVGIARALAANP 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLS--RGRVV 885
Cdd:PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLwQETGKQVLLITHDIEEAVFMATELVLLSpgPGRVV 210
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
686-882 |
9.44e-20 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 89.06 E-value: 9.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhqaAASARRGIghIPEGRGIFPDLTV 765
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT-------EPGPDRMV--VFQNYSLLPWLTV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 766 KENLDLGSFAAPSRSVSPEDLERVLGYFPILGdrLGQLA----GTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLI 841
Cdd:TIGR01184 72 RENIALAVDRVLPDLSKSERRAIVEEHIALVG--LTEAAdkrpGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2045876399 842 SQQVFN-MMRTIADSGVSILLVEQNARASLALADRAYVLSRG 882
Cdd:TIGR01184 150 RGNLQEeLMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
674-893 |
1.00e-19 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 94.42 E-value: 1.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 674 VGVSAGYGvEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasaRRGIGHI 753
Cdd:TIGR01193 479 VSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL----RQFINYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 754 PEGRGIFpDLTVKENLDLGSfaapSRSVSPEDLERVLGYFPI----------LGDRLGQLAGTLSGGEQQMLAIARALLS 823
Cdd:TIGR01193 554 PQEPYIF-SGSILENLLLGA----KENVSQDEIWAACEIAEIkddienmplgYQTELSEEGSSISGGQKQRIALARALLT 628
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFNMMRTIADSgvSILLVEQnaRASLA-LADRAYVLSRGRVVLSGPADEV 893
Cdd:TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDK--TIIFVAH--RLSVAkQSDKIIVLDHGKIIEQGSHDEL 695
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
667-897 |
1.01e-19 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 89.60 E-value: 1.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEplSGWPRHQAAAS- 745
Cdd:PRK11701 3 DQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR--DGQLRDLYALSe 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 ARR--------GIGHIPEGRGIFPDLTVKENLDLGSFAAPS------RSVSPEDLERVlgyfPILGDRLGQLAGTLSGGE 811
Cdd:PRK11701 81 AERrrllrtewGFVHQHPRDGLRMQVSAGGNIGERLMAVGArhygdiRATAGDWLERV----EIDAARIDDLPTTFSGGM 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 812 QQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRT-IADSGVSILLVEQN-ARASLaLADRAYVLSRGRVVLSGP 889
Cdd:PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlVRELGLAVVIVTHDlAVARL-LAHRLLVMKQGRVVESGL 235
|
....*...
gi 2045876399 890 ADEVAANP 897
Cdd:PRK11701 236 TDQVLDDP 243
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
681-903 |
1.08e-19 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 89.61 E-value: 1.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 681 GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAdSGDLSWEGEPLSGWPrhqAAASARRgighipegRGIF 760
Cdd:PRK03695 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWS---AAELARH--------RAYL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 -------PDLTVKENLDLgSFAAPSRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGEQQ-------MLAIARALLSRPR 826
Cdd:PRK03695 75 sqqqtppFAMPVFQYLTL-HQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQrvrlaavVLQVWPDINPAGQ 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 827 LLMLDEPSLGLAplISQQV--FNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSLTGSY 903
Cdd:PRK03695 154 LLLLDEPMNSLD--VAQQAalDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVF 230
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
668-859 |
1.09e-19 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 93.53 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGYgvePVLRELD---LTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLS-GWPRHQAA 743
Cdd:PRK10762 2 QALLQLKGIDKAF---PGVKALSgaaLNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfNGPKSSQE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 744 AsarrGIGHIPEGRGIFPDLTVKENLDLG-----SFAAPSRSVSPEDLERVLGyfpilgdRLG------QLAGTLSGGEQ 812
Cdd:PRK10762 79 A----GIGIIHQELNLIPQLTIAENIFLGrefvnRFGRIDWKKMYAEADKLLA-------RLNlrfssdKLVGELSIGEQ 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2045876399 813 QMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSI 859
Cdd:PRK10762 148 QMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGI 194
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
659-888 |
1.09e-19 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 88.74 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 659 PSSSDRQGSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPlsgwp 738
Cdd:cd03220 11 PTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV----- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 739 rhqaaaSARRGIGHipegrGIFPDLTVKENLDL-GSFAAPSRSVSPEDLERVLGyFPILGDRLGQLAGTLSGGEQQMLAI 817
Cdd:cd03220 86 ------SSLLGLGG-----GFNPELTGRENIYLnGRLLGLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLAF 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 818 ARALLSRPRLLMLDEpslGLA---PLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03220 154 AIATALEPDILLIDE---VLAvgdAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
686-899 |
1.28e-19 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 91.47 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTV-----GKGeIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhqaaaSARRGIGHIPEGRGI- 759
Cdd:PRK11144 10 LGDLCLTVnltlpAQG-ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF---------DAEKGICLPPEKRRIg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 --------FPDLTVKENLDLGsfAAPSRSVSPEDLERVLGYFPILgDRLgqlAGTLSGGEQQMLAIARALLSRPRLLMLD 831
Cdd:PRK11144 80 yvfqdarlFPHYKVRGNLRYG--MAKSMVAQFDKIVALLGIEPLL-DRY---PGSLSGGEKQRVAIGRALLTAPELLLMD 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 832 EPslgLAPL---ISQQVFNMMRTIA-DSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:PRK11144 154 EP---LASLdlpRKRELLPYLERLArEINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
672-885 |
1.48e-19 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 89.36 E-value: 1.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 672 RLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIG 751
Cdd:PRK10419 14 AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA-FRRDIQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 752 HI-PEGRGIF-PDLTVKENLD-----LGSFAAPSRSVSPEDLERVLGYFPILGDRLGQlagTLSGGEQQMLAIARALLSR 824
Cdd:PRK10419 93 MVfQDSISAVnPRKTVREIIReplrhLLSLDKAERLARASEMLRAVDLDDSVLDKRPP---QLSGGQLQRVCLARALAVE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 825 PRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:PRK10419 170 PKLLILDEAVSNLDLVLQAGVIRLLKKLqQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
625-862 |
1.86e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 92.81 E-value: 1.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 625 TLAALGFRERRAARAHGLEIGPERETVADPVLETPSSSDRQGseALLRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLG 703
Cdd:TIGR02868 291 PAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGK--PTLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILG 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 704 ANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasaRRGIGHIPEGRGIFpDLTVKENLDLGSfaapsRSVSP 783
Cdd:TIGR02868 369 PSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEV----RRRVSVCAQDAHLF-DTTVRENLRLAR-----PDATD 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 784 EDLERVL----------GYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTiA 853
Cdd:TIGR02868 439 EELWAALervgladwlrALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
|
....*....
gi 2045876399 854 DSGVSILLV 862
Cdd:TIGR02868 518 LSGRTVVLI 526
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
681-837 |
2.50e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 87.16 E-value: 2.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 681 GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwprHQAAASARRGIGHIPEGRGIF 760
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL-----DFQRDSIARGLLYLGHAPGIK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 PDLTVKENLdlgSFAAP--SRSVSPEDLERV-LGYFpilGDRlgqLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL 837
Cdd:cd03231 86 TTLSVLENL---RFWHAdhSDEQVEEALARVgLNGF---EDR---PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
667-897 |
2.76e-19 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 88.49 E-value: 2.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGE----------PLSG 736
Cdd:PRK10619 2 SENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQtinlvrdkdgQLKV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 737 WPRHQAAaSARRGIGHIPEGRGIFPDLTVKENLdlgsFAAP------SRSVSPEDLERVLGYFPILGDRLGQLAGTLSGG 810
Cdd:PRK10619 82 ADKNQLR-LLRTRLTMVFQHFNLWSHMTVLENV----MEAPiqvlglSKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 811 EQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPA 890
Cdd:PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP 236
|
....*..
gi 2045876399 891 DEVAANP 897
Cdd:PRK10619 237 EQLFGNP 243
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
685-897 |
3.91e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 88.60 E-value: 3.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwPRHQAAASARRGIGHI---PEGRGIFP 761
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK--YDKKSLLEVRKTVGIVfqnPDDQLFAP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 dlTVKENLDLG--SFAAPSRSV---SPEDLERV--LGYfpilgdrLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:PRK13639 95 --TVEEDVAFGplNLGLSKEEVekrVKEALKAVgmEGF-------ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 835 LGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK13639 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
146-285 |
4.03e-19 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 88.60 E-value: 4.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 146 LVATVVLFAIVMRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLA-ALLVTPLTYLSPGSFTIFL-LTAF 223
Cdd:COG4177 142 LVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAgALYAHYVGFVSPESFSFLLsIEIL 221
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 224 AAVVLGGFTSVIGVVIGALVFGVATNLLLTYLDSSLIstytFLGVALVLVL--RPHGIFGRIER 285
Cdd:COG4177 222 LMVVLGGLGSLLGPVLGAVLLVLLPELLRSLPEYRLL----IFGLLLILVVlfRPRGLAGLLRR 281
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
684-903 |
4.47e-19 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 87.21 E-value: 4.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTI-------SGVIPADSGDLswegeplsgwpRHQAAASARRGIGHIPEG 756
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLerfydptSGEILLDGVDI-----------RDLNLRWLRSQIGLVSQE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 757 RGIFpDLTVKENLDLGSFAAPSrsvspEDLERVL--------------GYFPILGDRLGQLagtlSGGEQQMLAIARALL 822
Cdd:cd03249 86 PVLF-DGTIAENIRYGKPDATD-----EEVEEAAkkanihdfimslpdGYDTLVGERGSQL----SGGQKQRIAIARALL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 823 SRPRLLMLDEPSLGL---APLISQQVFNMMR------TIADSGVSIllveQNaraslalADRAYVLSRGRVVLSGPADEV 893
Cdd:cd03249 156 RNPKILLLDEATSALdaeSEKLVQEALDRAMkgrttiVIAHRLSTI----RN-------ADLIAVLQNGQVVEQGTHDEL 224
|
250
....*....|
gi 2045876399 894 AANPsltGSY 903
Cdd:cd03249 225 MAQK---GVY 231
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
685-904 |
4.57e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 87.80 E-value: 4.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLS-GWPRHQA-AASARRGIGHIPEGRGIFPD 762
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYfGKDIFQIdAIKLRKEVGMVFQQPNPFPH 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 LTVKENLdlgsfAAPSRS-----------VSPEDLERVlGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLD 831
Cdd:PRK14246 105 LSIYDNI-----AYPLKShgikekreikkIVEECLRKV-GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 832 EPSlGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP--SLTGSYL 904
Cdd:PRK14246 179 EPT-SMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPknELTEKYV 252
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
674-885 |
1.01e-18 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 86.01 E-value: 1.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 674 VGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaasARRGIGHI 753
Cdd:cd03244 8 VSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD----LRSRISII 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 754 PEGRGIFPDlTVKENLDlgsfaaPSRSVSPEDLERVL---GYFPILGDRLGQLAGT-------LSGGEQQMLAIARALLS 823
Cdd:cd03244 84 PQDPVLFSG-TIRSNLD------PFGEYSDEELWQALervGLKEFVESLPGGLDTVveeggenLSVGQRQLLCLARALLR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFNMMRTiADSGVSILLVEQNARaSLALADRAYVLSRGRVV 885
Cdd:cd03244 157 KSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLD-TIIDSDRILVLDKGRVV 216
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
689-897 |
1.87e-18 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 89.74 E-value: 1.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 689 LDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAdSGDLSWEGEPLSGWPRHQ----------------AAASARRGIGH 752
Cdd:COG4172 305 VSLTLRRGETLGLVGESGSGKSTLGLALLRLIPS-EGEIRFDGQDLDGLSRRAlrplrrrmqvvfqdpfGSLSPRMTVGQ 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 753 I-PEGRGI-FPDLTVKENLDLGSFAAPSRSVSPEDLERvlgyFPilgdrlgqlaGTLSGGEQQMLAIARALLSRPRLLML 830
Cdd:COG4172 384 IiAEGLRVhGPGLSAAERRARVAEALEEVGLDPAARHR----YP----------HEFSGGQRQRIAIARALILEPKLLVL 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 831 DEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG4172 450 DEPTSALDVSVQAQILDLLRDLqREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAP 517
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
685-881 |
2.37e-18 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 85.25 E-value: 2.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGHIPEGRGIFPDLT 764
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 765 VKENLDL-----GSFAAPSRSVSPEDLERVLgyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAP 839
Cdd:PRK11629 104 ALENVAMplligKKKPAEINSRALEMLAAVG-----LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2045876399 840 LISQQVFNMMRTI-ADSGVSILLVEQNarasLALADRayvLSR 881
Cdd:PRK11629 179 RNADSIFQLLGELnRLQGTAFLVVTHD----LQLAKR---MSR 214
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
684-883 |
2.80e-18 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 84.79 E-value: 2.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLswegeplsgWPRHQ------AAASAR-------RGI 750
Cdd:COG4778 25 PVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSI---------LVRHDggwvdlAQASPReilalrrRTI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GH-------IPegRGIFPDLTVKENLDLGSfaapSRSVSPEDLERVLGYFPIlGDRLGQLA-GTLSGGEQQMLAIARALL 822
Cdd:COG4778 96 GYvsqflrvIP--RVSALDVVAEPLLERGV----DREEARARARELLARLNL-PERLWDLPpATFSGGEQQRVNIARGFI 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGR 883
Cdd:COG4778 169 ADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
646-882 |
2.88e-18 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 90.84 E-value: 2.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 646 PERETVADPvlETPSSSDRQ-----GSEA-LLRLVGVSAGYG--VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTIS 717
Cdd:TIGR01257 1909 PAKEPIFDE--DDDVAEERQriisgGNKTdILRLNELTKVYSgtSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLT 1986
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 718 GVIPADSGDLSWEGEPLSgwprhQAAASARRGIGHIPEGRGIFPDLTVKENLDLgsfAAPSRSVSPEDLERVLGY----- 792
Cdd:TIGR01257 1987 GDTTVTSGDATVAGKSIL-----TNISDVHQNMGYCPQFDAIDDLLTGREHLYL---YARLRGVPAEEIEKVANWsiqsl 2058
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 793 -FPILGDRLgqlAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLA 871
Cdd:TIGR01257 2059 gLSLYADRL---AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEA 2135
|
250
....*....|.
gi 2045876399 872 LADRAYVLSRG 882
Cdd:TIGR01257 2136 LCTRLAIMVKG 2146
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
671-884 |
3.30e-18 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 83.03 E-value: 3.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYG--VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasaRR 748
Cdd:cd03246 1 LEVENVSFRYPgaEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL----GD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDlTVKENLdlgsfaapsrsvspedlervlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSRPRLL 828
Cdd:cd03246 77 HVGYLPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNaRASLALADRAYVLSRGRV 884
Cdd:cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR-PETLASADRILVLEDGRV 173
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
675-898 |
3.58e-18 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 87.06 E-value: 3.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 675 GVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprhqaaASAR-RGIGHI 753
Cdd:PRK10851 7 NIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR-------LHARdRKVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 754 PEGRGIFPDLTVKENLDLG----------SFAAPSRSVSpEDLERVlgyfpilgdRLGQLAG----TLSGGEQQMLAIAR 819
Cdd:PRK10851 80 FQHYALFRHMTVFDNIAFGltvlprrerpNAAAIKAKVT-QLLEMV---------QLAHLADrypaQLSGGQKQRVALAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEElKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
687-884 |
3.68e-18 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 88.69 E-value: 3.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 687 RELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwPRHQAAAsARRGIGHIPEGR---GIFPDL 763
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS--PRSPLDA-VKKGMAYITESRrdnGFFPNF 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLdlgsfaAPSRSVSPEDLERVLGYF----------------PILGDRLGQLAGTLSGGEQQMLAIARALLSRPRL 827
Cdd:PRK09700 357 SIAQNM------AISRSLKDGGYKGAMGLFhevdeqrtaenqrellALKCHSVNQNITELSGGNQQKVLISKWLCCCPEV 430
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 828 LMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
684-891 |
3.89e-18 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 84.73 E-value: 3.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGvIPA---DSGDLSWEGEPLSGWPRHQaaaSARRGIG----HIPEg 756
Cdd:COG0396 14 EILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMG-HPKyevTSGSILLDGEDILELSPDE---RARAGIFlafqYPVE- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 757 rgiFPDLTVKENLDLgsfAAPSRSVSPEDLERVLGYFPILGDRLG--------QLAGTLSGGEQQMLAIARALLSRPRLL 828
Cdd:COG0396 89 ---IPGVSVSNFLRT---ALNARRGEELSAREFLKLLKEKMKELGldedfldrYVNEGFSGGEKKRNEILQMLLLEPKLA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 829 MLDEPSLGL----APLISqQVFNMMRtiaDSGVSILLVEQNARAsLAL--ADRAYVLSRGRVVLSGPAD 891
Cdd:COG0396 163 ILDETDSGLdidaLRIVA-EGVNKLR---SPDRGILIITHYQRI-LDYikPDFVHVLVDGRIVKSGGKE 226
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
687-884 |
4.14e-18 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 88.57 E-value: 4.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 687 RELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprHQAAASARRGIGHIPEGR---GIFPDL 763
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINA---LSTAQRLARGLVYLPEDRqssGLYLDA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENL------DLGSFAAPSRsvspeDLERVLGYFPILGDRLG---QLAGTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:PRK15439 357 PLAWNVcalthnRRGFWIKPAR-----ENAVLERYRRALNIKFNhaeQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2045876399 835 LGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
670-899 |
5.13e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 85.04 E-value: 5.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasARR 748
Cdd:PRK13644 1 MIRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG---IRK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHI---PEGRgiFPDLTVKENLDLG--SFAAPSRSVSpEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALLS 823
Cdd:PRK13644 78 LVGIVfqnPETQ--FVGRTVEEDLAFGpeNLCLPPIEIR-KRVDRALAEIG-LEKYRHRSPKTLSGGQGQCVALAGILTM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARaSLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSDVSL 228
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
671-898 |
5.36e-18 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 86.70 E-value: 5.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhqAAASARRGI 750
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT------HRSIQQRDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEGRGIFPDLTVKENLD-----LGSFAAPSRSVSPEDLERV-LGYFpilGDRlgqLAGTLSGGEQQMLAIARALLSR 824
Cdd:PRK11432 81 CMVFQSYALFPHMSLGENVGyglkmLGVPKEERKQRVKEALELVdLAGF---EDR---YVDQISGGQQQRVALARALILK 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 825 PRLLMLDEPslgLAPLISQQVFNMMRTIAD----SGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:PRK11432 155 PKVLLFDEP---LSNLDANLRRSMREKIRElqqqFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
668-884 |
6.84e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 87.96 E-value: 6.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGYGVEPVLRELD---LTVGKGEIVALLGANGAGKSTVLRTISGVIP-ADSGDLSWEGEPLSgwpRHQAA 743
Cdd:TIGR02633 255 DVILEARNLTCWDVINPHRKRVDdvsFSLRRGEILGVAGLVGAGRTELVQALFGAYPgKFEGNVFINGKPVD---IRNPA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 744 ASARRGIGHIPEGR---GIFPDLTVKENLDLG---SFAAPSRSVSPEDLERVLGYFPILGDRLGQ--LA-GTLSGGEQQM 814
Cdd:TIGR02633 332 QAIRAGIAMVPEDRkrhGIVPILGVGKNITLSvlkSFCFKMRIDAAAELQIIGSAIQRLKVKTASpfLPiGRLSGGNQQK 411
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 815 LAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
686-895 |
1.15e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 84.51 E-value: 1.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhqaaaSARRGIGHIPEGRGIF---PD 762
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID---------YSRKGLMKLRESVGMVfqdPD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 -----LTVKENLDLG--SFAAPSRSVSpEDLERVLGYFPI--LGDRLGQlagTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:PRK13636 93 nqlfsASVYQDVSFGavNLKLPEDEVR-KRVDNALKRTGIehLKDKPTH---CLSFGQKKRVAIAGVLVMEPKVLVLDEP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 834 SLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:PRK13636 169 TAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
666-893 |
1.31e-17 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 85.56 E-value: 1.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 666 GSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKStvlrtiSGVIPA-----DSGDLSWEgepLSGWPRH 740
Cdd:NF000106 9 GARNAVEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**------RGALPAhv*gpDAGRRPWR---F*TWCAN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 741 QAAAsaRRGIG-HIPEGRGIFPDLTVKENLDL-GSFAAPSRSVSPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIA 818
Cdd:NF000106 80 RRAL--RRTIG*HRPVR*GRRESFSGRENLYMiGR*LDLSRKDARARADELLERFS-LTEAAGRAAAKYSGGMRRRLDLA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 819 RALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:NF000106 157 ASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
669-884 |
1.44e-17 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 85.47 E-value: 1.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLswegepLSGWPRHQAAASARR 748
Cdd:PRK11000 2 ASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL------FIGEKRMNDVPPAER 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPEDLE-RVLGYFPILgdrlgQLA-------GTLSGGEQQMLAIARA 820
Cdd:PRK11000 76 GVGMVFQSYALYPHLSVAENM---SFGLKLAGAKKEEINqRVNQVAEVL-----QLAhlldrkpKALSGGQRQRVAIGRT 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 821 LLSRPRLLMLDEPSLGL-APLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:PRK11000 148 LVAEPSVFLLDEPLSNLdAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
667-897 |
1.49e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 83.29 E-value: 1.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTI---SGVIP--ADSGDLSWEGEPLSGwPRHQ 741
Cdd:PRK14239 2 TEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrmNDLNPevTITGSIVYNGHNIYS-PRTD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 742 AAaSARRGIGHIPEGRGIFPdLTVKENLDLGSFAA--PSRSVSPEDLERVLGYFPI---LGDRLGQLAGTLSGGEQQMLA 816
Cdd:PRK14239 81 TV-DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKgiKDKQVLDEAVEKSLKGASIwdeVKDRLHDSALGLSGGQQQRVC 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 817 IARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSgVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
.
gi 2045876399 897 P 897
Cdd:PRK14239 238 P 238
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
661-898 |
1.54e-17 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 83.16 E-value: 1.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 661 SSDRQGSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISG---VIPAD--SGDLSWEGEPLS 735
Cdd:COG1117 2 TAPASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRmndLIPGArvEGEILLDGEDIY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 736 GwpRHQAAASARRGIGHI-----PegrgiFPdLTVKENLDLGsfaaP------SRSVSPEDLERVL---GYFPILGDRLG 801
Cdd:COG1117 82 D--PDVDVVELRRRVGMVfqkpnP-----FP-KSIYDNVAYG----LrlhgikSKSELDEIVEESLrkaALWDEVKDRLK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 802 QLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSgVSILLV----EQNARaslaLADRAY 877
Cdd:COG1117 150 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVthnmQQAAR----VSDYTA 224
|
250 260
....*....|....*....|.
gi 2045876399 878 VLSRGRVVLSGPADEVAANPS 898
Cdd:COG1117 225 FFYLGELVEFGPTEQIFTNPK 245
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
684-888 |
1.64e-17 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 81.93 E-value: 1.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAD---SGDLSWEGEPLsgwprHQAAASARRGIGHIPEGRGIF 760
Cdd:cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPY-----KEFAEKYPGEIIYVSEEDVHF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 PDLTVKENLDlgsFAAPSRsvspedlervlgyfpilGDRLgqLAGtLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPL 840
Cdd:cd03233 96 PTLTVRETLD---FALRCK-----------------GNEF--VRG-ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2045876399 841 ISQQVFNMMRTIADS--GVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:cd03233 153 TALEILKCIRTMADVlkTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
671-834 |
1.87e-17 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 79.80 E-value: 1.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWegeplsgwprhqaaasarrgi 750
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW--------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 ghipeGRGIfpdltvkenldlgsfaapsrsvspedlerVLGYFPilgdrlgQlagtLSGGEQQMLAIARALLSRPRLLML 830
Cdd:cd03221 60 -----GSTV-----------------------------KIGYFE-------Q----LSGGEKMRLALAKLLLENPNLLLL 94
|
....
gi 2045876399 831 DEPS 834
Cdd:cd03221 95 DEPT 98
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
692-884 |
2.84e-17 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 86.14 E-value: 2.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 692 TVGKGEIVALLGANGAGKSTVLRTISGVIP-ADSGDLSWEGEPLSgwPRHQAAAsARRGIGHIPEGR---GIFPDLTVKE 767
Cdd:PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVK--IRNPQQA-IAQGIAMVPEDRkrdGIVPVMGVGK 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 768 NLDLGS---FAAPSRSVSPEDLERVLGYFpilgDRLG------QLA-GTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL 837
Cdd:PRK13549 361 NITLAAldrFTGGSRIDDAAELKTILESI----QRLKvktaspELAiARLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2045876399 838 APLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:PRK13549 437 DVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
679-862 |
2.91e-17 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 80.74 E-value: 2.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 679 GYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLswegeplsgwprhqaAASARRGIGHIPEgRG 758
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV---------------RRAGGARVAYVPQ-RS 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 759 IFPD---LTVKENLDLGSFA--APSRSVSPED-------LERVLgyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPR 826
Cdd:NF040873 65 EVPDslpLTVRDLVAMGRWArrGLWRRLTRDDraavddaLERVG-----LADLAGRQLGELSGGQRQRALLAQGLAQEAD 139
|
170 180 190
....*....|....*....|....*....|....*.
gi 2045876399 827 LLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLV 862
Cdd:NF040873 140 LLLLDEPTTGLDAESRERIIALLAEEHARGATVVVV 175
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
664-895 |
3.66e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 85.73 E-value: 3.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 664 RQGSEALLRLVGVSAgygvePVLRE-LDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwPRHQA 742
Cdd:PRK11288 251 RPLGEVRLRLDGLKG-----PGLREpISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI---DIRSP 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 743 AASARRGIGHIPEGR---GIFPDLTVKENLDLGSfaapSRSVSP-----------EDLERVLGYFPILGDRLGQLAGTLS 808
Cdd:PRK11288 323 RDAIRAGIMLCPEDRkaeGIIPVHSVADNINISA----RRHHLRagclinnrweaENADRFIRSLNIKTPSREQLIMNLS 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 809 GGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV---V 885
Cdd:PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIageL 478
|
250
....*....|
gi 2045876399 886 LSGPADEVAA 895
Cdd:PRK11288 479 AREQATERQA 488
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
675-861 |
7.75e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 79.92 E-value: 7.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 675 GVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPlSGWPRHQAAAsarRGIGHip 754
Cdd:PRK13539 7 DLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD-IDDPDVAEAC---HYLGH-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 755 eGRGIFPDLTVKENLDlgsFAAPSRSVSPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:PRK13539 81 -RNAMKPALTVAENLE---FWAAFLGGEELDIAAALEAVG-LAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155
|
170 180
....*....|....*....|....*..
gi 2045876399 835 LGLAPLISQQVFNMMRTIADSGVSILL 861
Cdd:PRK13539 156 AALDAAAVALFAELIRAHLAQGGIVIA 182
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
696-894 |
8.57e-17 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 85.10 E-value: 8.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 696 GEIVALLGANGAGKSTVLRTISGVIPAD---SGDLSWEGEPLSGWPRHQAAASARrgighipEGRGIFPDLTVKENLDLG 772
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDAKEMRAISAYVQ-------QDDLFIPTLTVREHLMFQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 773 S-FAAPSRSVSPEDLERV------LGYFPILGDRLGQ--LAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQ 843
Cdd:TIGR00955 124 AhLRMPRRVTKKEKRERVdevlqaLGLRKCANTRIGVpgRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 844 QVFNMMRTIADSGVSILLVEQNARASL-ALADRAYVLSRGRVVLSGPADEVA 894
Cdd:TIGR00955 204 SVVQVLKGLAQKGKTIICTIHQPSSELfELFDKIILMAEGRVAYLGSPDQAV 255
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
668-895 |
1.00e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 84.47 E-value: 1.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGY-----GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWE-GEPlsgW---- 737
Cdd:TIGR03269 277 EPIIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDE---Wvdmt 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 738 -PRHQAAASARRGIGHIPEGRGIFPDLTVKENL------DLGSFAAPSRSV--------SPEDLERVLGYFPilgdrlgq 802
Cdd:TIGR03269 354 kPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLteaiglELPDELARMKAVitlkmvgfDEEKAEEILDKYP-------- 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 803 laGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFN-MMRTIADSGVSILLVEQNARASLALADRAYVLSR 881
Cdd:TIGR03269 426 --DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHsILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRD 503
|
250
....*....|....
gi 2045876399 882 GRVVLSGPADEVAA 895
Cdd:TIGR03269 504 GKIVKIGDPEEIVE 517
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
686-897 |
1.08e-16 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 82.54 E-value: 1.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIGHIPEGRGIFPDLTV 765
Cdd:PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK-ARRQIGMIFQHFNLLSSRTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 766 KENLDL-----GSFAAPSRSVSPEDLERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPL 840
Cdd:PRK11153 100 FDNVALplelaGTPKAEIKARVTELLELV-G----LSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 841 ISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK11153 175 TTRSILELLKDInRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHP 232
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
671-885 |
2.37e-16 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 78.61 E-value: 2.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYG--VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasaRR 748
Cdd:cd03369 7 IEVENLSVRYApdLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL----RS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFpDLTVKENLDlgsfaaPSRSVSPEDLERVLgyfpilgdRLGQLAGTLSGGEQQMLAIARALLSRPRLL 828
Cdd:cd03369 83 SLTIIPQDPTLF-SGTIRSNLD------PFDEYSDEEIYGAL--------RVSEGGLNLSQGQRQLLCLARALLKRPRVL 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 829 MLDEPSlglAPLISQQVFNMMRTIAD--SGVSILLVEQNARaSLALADRAYVLSRGRVV 885
Cdd:cd03369 148 VLDEAT---ASIDYATDALIQKTIREefTNSTILTIAHRLR-TIIDYDKILVMDAGEVK 202
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
673-888 |
3.15e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 83.91 E-value: 3.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 673 LVGVSAGYGvEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwprHQAAASARRGIGH 752
Cdd:TIGR01257 934 LVKIFEPSG-RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-----ETNLDAVRQSLGM 1007
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 753 IPEGRGIFPDLTVKENLdlgSFAAPSRSVSPEDLErvLGYFPILGD-----RLGQLAGTLSGGEQQMLAIARALLSRPRL 827
Cdd:TIGR01257 1008 CPQHNILFHHLTVAEHI---LFYAQLKGRSWEEAQ--LEMEAMLEDtglhhKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 828 LMLDEPSLGLAPLISQQVFNMMRTIAdSGVSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
682-897 |
3.16e-16 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 79.83 E-value: 3.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 682 VEPVlRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLS----GWpRHQ----------AAASAR 747
Cdd:PRK15112 26 VEAV-KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdySY-RSQrirmifqdpsTSLNPR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIpegrgifPDLTVKENLDLgsfAAPSRSVSPEDLERVLGYFPilgDRLGQLAGTLSGGEQQMLAIARALLSRPRL 827
Cdd:PRK15112 104 QRISQI-------LDFPLRLNTDL---EPEQREKQIIETLRQVGLLP---DHASYYPHMLAPGQKQRLGLARALILRPKV 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 828 LMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK15112 171 IIADEALASLDMSMRSQLINLMLELQEKqGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
353-613 |
3.19e-16 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 79.61 E-value: 3.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 353 LFLLATAFAMFVGVLGLNVLAGFSGQVSLGQSAFLAIGAYTAAVAVDRGLP-PLVGVALALVVGGGAGLLLGLPATRLSG 431
Cdd:pfam02653 3 LNILTLASIYAIAALGLTLIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGPgLWLALPVGILVGAAVGLLIGILTLRLKI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 432 IYLTLLTLIFAFALPELIVYLKDVTNGASGLPlTPPEFLFVPANMYWFMLAAACAVGAGVMVLA-----GTRTGRAWRAV 506
Cdd:pfam02653 83 NEVIITLLLNLAALGLALFLVTGILGGEGGTS-GITGPSGFPGAFLSFAFAFIFLLALLLVLALwlllyRTKFGRALRAV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 507 RDSEDGARSLGLKPAGVKLGAFTLGSALAALGGALGGLLVGFVGPDSYGVFVSIYALLAVVLGGSGSVFGSLLGALFITV 586
Cdd:pfam02653 162 GENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAVVLGGAGSPIGVVIGSLIIGL 241
|
250 260
....*....|....*....|....*..
gi 2045876399 587 VPDVTGGSGIPQNLLFGIALLLVLFLA 613
Cdd:pfam02653 242 VQSLGLGALGSPPELSLLVLGALLILV 268
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
686-891 |
3.35e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 80.16 E-value: 3.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIG---HIPEGRgIFPD 762
Cdd:PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGvvfQFPESQ-LFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 LTVKENldlgSFAAPSRSVSPEDLERV----LGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLA 838
Cdd:PRK13643 101 TVLKDV----AFGPQNFGIPKEKAEKIaaekLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 839 PLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG-PAD 891
Cdd:PRK13643 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGtPSD 230
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
684-891 |
4.14e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 79.79 E-value: 4.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIG---HIPEGRgIF 760
Cdd:PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGlvfQFPESQ-LF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 pDLTVKENLdlgSFAAPSRSVSPEDLERV----LGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLG 836
Cdd:PRK13649 100 -EETVLKDV---AFGPQNFGVSQEEAEALarekLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 837 LAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSG-PAD 891
Cdd:PRK13649 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGkPKD 231
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
686-885 |
4.27e-16 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 82.14 E-value: 4.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADS--GDLSWEGEPLSgwpRHQAAASARRGIGHIPEGRGIFPDL 763
Cdd:NF040905 17 LDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDGEVCR---FKDIRDSEALGIVIIHQELALIPYL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDLGSFAApSRSV---------SPEDLERVlGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:NF040905 94 SIAENIFLGNERA-KRGVidwnetnrrARELLAKV-G----LDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEPT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 835 LGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:NF040905 168 AALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRTI 218
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
686-893 |
4.97e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 79.71 E-value: 4.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgWPRHQAAASARRGIGHI---PEGRgIFPD 762
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI--TDKKVKLSDIRKKVGLVfqyPEYQ-LFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLDLGsfaaPSR-SVSPEDLE-RVLGYFPILG----DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLG 836
Cdd:PRK13637 100 -TIEKDIAFG----PINlGLSEEEIEnRVKRAMNIVGldyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 837 LAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK13637 175 LDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
684-888 |
5.14e-16 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 78.46 E-value: 5.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISG--VIPADSGDLSWEGEPLSGWPRHQaaaSARRGI----GHIPEgr 757
Cdd:TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGhpSYEVTSGTILFKGQDLLELEPDE---RARAGLflafQYPEE-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 758 giFPDLTVKENLDLGSFAApsRSVSPEDLERVLGYFPILGDRLGQLA------------GtLSGGEQQMLAIARALLSRP 825
Cdd:TIGR01978 89 --IPGVSNLEFLRSALNAR--RSARGEEPLDLLDFEKLLKEKLALLDmdeeflnrsvneG-FSGGEKKRNEILQMALLEP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALA-DRAYVLSRGRVVLSG 888
Cdd:TIGR01978 164 KLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKpDYVHVLLDGRIVKSG 227
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
685-899 |
5.66e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 79.08 E-value: 5.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAaasaRRGIGHI---PEGRGIFP 761
Cdd:PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV----RKFVGLVfqnPDDQIFSP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 dlTVKENLdlgSFAAPSRSVSPEDLE-RVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLA 838
Cdd:PRK13652 95 --TVEQDI---AFGPINLGLDEETVAhRVSSALHMLGleELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 839 PLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:PRK13652 170 PQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
657-895 |
8.04e-16 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 81.55 E-value: 8.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 657 ETPSSSDRQGSEALLRLVG------VSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSW 729
Cdd:PRK13657 315 AVPDVRDPPGAIDLGRVKGavefddVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 730 EGEPLSGWPRhqaaASARRGIGHIPEGRGIFpDLTVKENLDLGS--------FAAPSRSVSPEDLER-VLGYFPILGDRL 800
Cdd:PRK13657 395 DGTDIRTVTR----ASLRRNIAVVFQDAGLF-NRSIEDNIRVGRpdatdeemRAAAERAQAHDFIERkPDGYDTVVGERG 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 801 GQLagtlSGGEQQMLAIARALLSRPRLLMLDEPSlglaplisqqvfnmmrtiadsgvSILLVEQNARASLAL-------- 872
Cdd:PRK13657 470 RQL----SGGERQRLAIARALLKDPPILILDEAT-----------------------SALDVETEAKVKAALdelmkgrt 522
|
250 260 270
....*....|....*....|....*....|....*.
gi 2045876399 873 -------------ADRAYVLSRGRVVLSGPADEVAA 895
Cdd:PRK13657 523 tfiiahrlstvrnADRILVFDNGRVVESGSFDELVA 558
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
668-893 |
8.80e-16 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 78.52 E-value: 8.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGY--GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprHQAAAS 745
Cdd:PRK13635 3 EEIIRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLS----EETVWD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 ARRGIGHI---PEGRgiFPDLTVKENLdlgSFAAPSRSVSPEDL-ERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIAR 819
Cdd:PRK13635 79 VRRQVGMVfqnPDNQ--FVGATVQDDV---AFGLENIGVPREEMvERVDQALRQVGmeDFLNREPHRLSGGQKQRVAIAG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIAD-SGVSILLVEQNARASlALADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEqKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
667-897 |
1.18e-15 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 80.88 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRL----VGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKS----TVLRTISGVIPADSGDLSWEGEPLSGWP 738
Cdd:COG4172 3 SMPLLSVedlsVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 739 rhqaaASARRGIghipegRG-----IF--------PDLTVKENL--------DLGSFAAPSRSVspEDLERVlGyFPILG 797
Cdd:COG4172 83 -----ERELRRI------RGnriamIFqepmtslnPLHTIGKQIaevlrlhrGLSGAAARARAL--ELLERV-G-IPDPE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 798 DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNarasLAL---- 872
Cdd:COG4172 148 RRLDAYPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLqRELGMALLLITHD----LGVvrrf 223
|
250 260
....*....|....*....|....*
gi 2045876399 873 ADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG4172 224 ADRVAVMRQGEIVEQGPTAELFAAP 248
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
696-898 |
1.36e-15 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 78.98 E-value: 1.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 696 GEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIghipegRGIF--------PDLTVKE 767
Cdd:PRK15079 47 GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA-VRSDI------QMIFqdplaslnPRMTIGE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 768 NLdlgsfAAPSRSVSP-----EDLERV------LGYFPILGDRLGQlagTLSGGEQQMLAIARALLSRPRLLMLDEPSLG 836
Cdd:PRK15079 120 II-----AEPLRTYHPklsrqEVKDRVkammlkVGLLPNLINRYPH---EFSGGQCQRIGIARALILEPKLIICDEPVSA 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 837 LAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:PRK15079 192 LDVSIQAQVVNLLQQLqREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPL 254
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
667-896 |
1.55e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 77.72 E-value: 1.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVE--PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprHQAAA 744
Cdd:PRK13632 4 KSVMIKVENVSFSYPNSenNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS----KENLK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 745 SARRGIGHI---PEGRgiFPDLTVKENLdlgSFAAPSRSVSPEDLERVLgyfpilgDRLGQLAGT----------LSGGE 811
Cdd:PRK13632 80 EIRKKIGIIfqnPDNQ--FIGATVEDDI---AFGLENKKVPPKKMKDII-------DDLAKKVGMedyldkepqnLSGGQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 812 QQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPAD 891
Cdd:PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227
|
....*
gi 2045876399 892 EVAAN 896
Cdd:PRK13632 228 EILNN 232
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
5-284 |
1.83e-15 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 78.43 E-value: 1.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 5 VISGLIVGLLYAIAGLGFVVIYRTSKVLNFAMGGLGAVVAYVASDLI--------DLGLPYPVVVLLGLLVGGLLGALLE 76
Cdd:PRK10740 12 MFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIaalmmmgiDTSWLLVAAGFVGAIVIASAYGWSI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 77 LAIA-RPLRDRPHLTVALATLGALLILEGLVGLRYGFAPQSLaPAFDRG---VGLDVG-PISISTNQLFVAGMGLVATVV 151
Cdd:PRK10740 92 ERVAyRPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDVAL-PSLFNGqwvVGHSENfSASITTMQAVIWIVTFLAMLA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 152 LFAIVMRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTPLtYLSPGSFTIFL--LTAFAAVVLG 229
Cdd:PRK10740 171 LTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQF-YGVINPYIGFMagMKAFTAAVLG 249
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 230 GFTSVIGVVIGALVFGVATNLLLTYLDSSLISTYTFLGVALVLVLRPHGIFGRIE 284
Cdd:PRK10740 250 GIGSIPGAMIGGLILGIAEALSSAYLSTEYKDVVSFALLILVLLVMPTGILGRPE 304
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
670-885 |
1.89e-15 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 76.45 E-value: 1.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWpRHQAAASARR 748
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL-KNREVPFLRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFPDLTVKENLDLGSFAApsrSVSPEDLER-VLGYFPILG--DRLGQLAGTLSGGEQQMLAIARALLSRP 825
Cdd:PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRrVSAALDKVGllDKAKNFPIQLSGGEQQRVGIARAVVNKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
93-274 |
1.92e-15 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 78.22 E-value: 1.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 93 LATLGALLILEGLVGLRYGFAPQSLAPAFDRGVGL-DVGPISISTnqLFVAGMGLVATVVLfaivMRTRLGLGMRAVSSG 171
Cdd:COG1172 128 IVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQgSLLGIPVPV--LIALVVALVAWFLL----RRTRFGRYIYAVGGN 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 172 PLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTP-LTYLSPGSFTIFLLTAFAAVVLG------GFTSVIGVVIGALVF 244
Cdd:COG1172 202 EEAARLSGINVRRVKILAYVLSGLLAGLAGILLAArLGSAQPNAGSGYELDAIAAVVIGgtsltgGRGSVLGTLLGALIL 281
|
170 180 190
....*....|....*....|....*....|
gi 2045876399 245 GVATNlLLTYLDSSLISTYTFLGVALVLVL 274
Cdd:COG1172 282 GVLNN-GLNLLGVSSYWQQIVKGAIILLAV 310
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
683-832 |
1.97e-15 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 80.24 E-value: 1.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 683 EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVipadsgdlswegeplsgWPRhqaaasarrGIGHI--PEGRGI- 759
Cdd:COG4178 376 RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGL-----------------WPY---------GSGRIarPAGARVl 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 -------FPDLTVKENLdlgSFAAPSRSVSPEDLERV-----LGYfpiLGDRLGQLAG---TLSGGEQQMLAIARALLSR 824
Cdd:COG4178 430 flpqrpyLPLGTLREAL---LYPATAEAFSDAELREAleavgLGH---LAERLDEEADwdqVLSLGEQQRLAFARLLLHK 503
|
....*...
gi 2045876399 825 PRLLMLDE 832
Cdd:COG4178 504 PDWLFLDE 511
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
668-898 |
2.07e-15 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 79.31 E-value: 2.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 EALLRLVGVSAGygvepvLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASAR 747
Cdd:PRK10070 32 EQILEKTGLSLG------VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 748 RGIGHIPEGRGIFPDLTVKEN----LDLGSFAAPSRSVSPEDLERVLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLS 823
Cdd:PRK10070 106 KKIAMVFQSFALMPHMTVLDNtafgMELAGINAEERREKALDALRQVG----LENYAHSYPDELSGGMRQRVGLARALAI 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFN-MMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:PRK10070 182 NPDILLMDEAFSALDPLIRTEMQDeLVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPA 257
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
670-897 |
2.47e-15 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 76.69 E-value: 2.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLswegeplsgwpRHQAAASarrg 749
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKLR---- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPD--LTVKENLDLGSfAAPSRSVSPEdLERVLGyfpilGDRLGQLAGTLSGGEQQMLAIARALLSRPRL 827
Cdd:PRK09544 69 IGYVPQKLYLDTTlpLTVNRFLRLRP-GTKKEDILPA-LKRVQA-----GHLIDAPMQKLSGGETQRVLLARALLNRPQL 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 828 LMLDEPSLG--------LAPLISQqvfnmMRTIADSGVsiLLVEQNARASLALADRAYVLSRgRVVLSGPADEVAANP 897
Cdd:PRK09544 142 LVLDEPTQGvdvngqvaLYDLIDQ-----LRRELDCAV--LMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLHP 211
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
690-897 |
2.54e-15 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 78.23 E-value: 2.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 690 DLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIgHIpegrgIF--------P 761
Cdd:COG4608 38 SFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRP-LRRRM-QM-----VFqdpyaslnP 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKENL-------DLGSFAAPSRSV---------SPEDLERvlgyFPilgdrlgqlaGTLSGGEQQMLAIARALLSRP 825
Cdd:COG4608 111 RMTVGDIIaeplrihGLASKAERRERVaellelvglRPEHADR----YP----------HEFSGGQRQRIGIARALALNP 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSIL-------LVEQnaraslaLADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:COG4608 177 KLIVCDEPVSALDVSIQAQVLNLLEDLqDELGLTYLfishdlsVVRH-------ISDRVAVMYLGKIVEIAPRDELYARP 249
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
666-874 |
3.21e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 76.74 E-value: 3.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 666 GSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRT---ISGVIPA--DSGDLSWEGEPLsgWPRH 740
Cdd:PRK14243 6 GTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrLNDLIPGfrVEGKVTFHGKNL--YAPD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 741 QAAASARRGIGHIPEGRGIFPDlTVKENLDLGSFAAPSRSVSPEDLERVL---GYFPILGDRLGQLAGTLSGGEQQMLAI 817
Cdd:PRK14243 84 VDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLrqaALWDEVKDKLKQSGLSLSGGQQQRLCI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 818 ARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSgVSILLVEQNARASLALAD 874
Cdd:PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSD 218
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
683-884 |
3.90e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 76.69 E-value: 3.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 683 EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSG---WprhqaaaSARRGIGHI---PEG 756
Cdd:PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEenvW-------DIRHKIGMVfqnPDN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 757 RgiFPDLTVKENLdlgSFAAPSRSVSPEDL-ERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:PRK13650 93 Q--FVGATVEDDV---AFGLENKGIPHEEMkERVNEALELVGmqDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 834 SLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARaSLALADRAYVLSRGRV 884
Cdd:PRK13650 168 TSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLD-EVALSDRVLVMKNGQV 218
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
93-274 |
4.05e-15 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 76.29 E-value: 4.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 93 LATLGALLILEGLVGLRYGFAPQSLAPAFDRGVGLDVGPISISTNQLFVAGMGLVATVVLfaivMRTRLGLGMRAVSSGP 172
Cdd:cd06579 77 IVTLGTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLL----RRTRFGRYLYAVGGNP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 173 LTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTP-LTYLSPGSFTIFLLTAFAAVVLGGFT------SVIGVVIGALVFG 245
Cdd:cd06579 153 EAARLSGINVRRVKILAYVLSGLLAGLAGILLAArLGSAQPTAGNGYELDAIAAVVLGGTSltggrgSVLGTLLGALLLG 232
|
170 180
....*....|....*....|....*....
gi 2045876399 246 VATNlLLTYLDSSLISTYTFLGVALVLVL 274
Cdd:cd06579 233 VLNN-GLNLLGVSSFWQQIVKGAILLLAV 260
|
|
| livM |
PRK11301 |
leucine/isoleucine/valine transporter permease subunit; Provisional |
367-617 |
4.38e-15 |
|
leucine/isoleucine/valine transporter permease subunit; Provisional
Pssm-ID: 236896 [Multi-domain] Cd Length: 419 Bit Score: 78.47 E-value: 4.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 367 LGLNVLAGFSGQVSLGQSAFLAIGAYTAAVAVDR-GLPPLVGVALALVVGGGAGLLLGLPATRLSGIYLTLLTLIFAFAL 445
Cdd:PRK11301 126 LGLNVVVGLAGLLDLGYVGFYAVGAYTYALLNHYyGLGFWECLPIAGLMAALFGFLLGFPVLRLRGDYLAIVTLGFGEII 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 446 PELIVYLKDVT---NGASGLP------------------LTPPEFL---FVPANMYWFmLAAACAVGAGVMVLAGTR--- 498
Cdd:PRK11301 206 RILLLNNTEITggpNGISQIPkptlfglefsrtareggwDTFHEFFglkYDPSDRVIF-LYLVALLLVVLTLFVINRllr 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 499 --TGRAWRAVRDSEDGARSLGLKPAGVKLGAFTLGSALAALGGALGGLLVGFVGPDSYGVFVSIYALLAVVLGGSGSVFG 576
Cdd:PRK11301 285 mpLGRAWEALREDEIACRSLGLNPTRIKLSAFTIGAAFAGFAGTFFAARQGFVSPESFTFIESAFILAIVVLGGMGSQFG 364
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2045876399 577 SLLGALFITVVPDVTGGSGIPQNLLFGIALLLVLFLAPRGL 617
Cdd:PRK11301 365 VILAAILLVVLPELMRDFNEYRMLMFGLLMVLMMIWRPQGL 405
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
667-893 |
5.51e-15 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 76.18 E-value: 5.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVG--VSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwpRHQAAA 744
Cdd:PRK10253 2 TESVARLRGeqLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI----QHYASK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 745 SARRGIGHIPEGRGIFPDLTVKENLDLGSFaaPSRSV----SPEDLERVLGYFPILG--DRLGQLAGTLSGGEQQMLAIA 818
Cdd:PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRY--PHQPLftrwRKEDEEAVTKAMQATGitHLADQSVDTLSGGQRQRAWIA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 819 RALLSRPRLLMLDEPSLGLAplISQQVfNMMRTIAD----SGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK10253 156 MVLAQETAIMLLDEPTTWLD--ISHQI-DLLELLSElnreKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
669-895 |
9.26e-15 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 78.61 E-value: 9.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGY--GVEP--VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAA 744
Cdd:PRK10535 3 ALLELKDIRRSYpsGEEQveVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 745 SARRGIGHIPEGRGIFPDLTVKENLDL-----GSFAAPSRSVSPEDLERvLGyfpiLGDRLGQLAGTLSGGEQQMLAIAR 819
Cdd:PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVpavyaGLERKQRLLRAQELLQR-LG----LEDRVEYQPSQLSGGQQQRVSIAR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASlALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA-AQAERVIEIRDGEIVRNPPAQEKVN 232
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
685-870 |
1.35e-14 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 74.89 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLR------TISGVIPADSgdLSWEGEPLSGWprhqaaasaRRGIGHIPEGRG 758
Cdd:cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSaflrllNTEGDIQIDG--VSWNSVPLQKW---------RKAFGVIPQKVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 759 IFPDlTVKENLDlgsfaaPSRSVSPEDLERV---LGYFPILGDRLGQLAGTL-------SGGEQQMLAIARALLSRPRLL 828
Cdd:cd03289 88 IFSG-TFRKNLD------PYGKWSDEEIWKVaeeVGLKSVIEQFPGQLDFVLvdggcvlSHGHKQLMCLARSVLSKAKIL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTiADSGVSILLVEQNARASL 870
Cdd:cd03289 161 LLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAML 201
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
683-888 |
1.64e-14 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 77.45 E-value: 1.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 683 EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWpRHQAAasaRRGIGHIPEGRGIFPD 762
Cdd:PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL-SHSVL---RQGVAMVQQDPVVLAD 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLDLGsfaapsRSVSPEDLERVLGYFPI----------LGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDE 832
Cdd:PRK10790 430 -TFLANVTLG------RDISEEQVWQALETVQLaelarslpdgLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE 502
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 833 PSLGLAPLISQQVFNMMRTIADSgvSILLVEQNARASLALADRAYVLSRGRVVLSG 888
Cdd:PRK10790 503 ATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVEADTILVLHRGQAVEQG 556
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
693-882 |
2.25e-14 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 72.66 E-value: 2.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 693 VGKGEIVALLGANGAGKSTVL-----RTISGVIpadSGDLSWEGEPLSgwprhqaaASARRGIGHIPEGRGIFPDLTVKE 767
Cdd:cd03232 30 VKPGTLTALMGESGAGKTTLLdvlagRKTAGVI---TGEILINGRPLD--------KNFQRSTGYVEQQDVHSPNLTVRE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 768 NLDlgsFAAPSRSVSPEDLERvlgyfpilgdrlgqlagtlsggeqqmLAIARALLSRPRLLMLDEPSLGLApliSQQVFN 847
Cdd:cd03232 99 ALR---FSALLRGLSVEQRKR--------------------------LTIGVELAAKPSILFLDEPTSGLD---SQAAYN 146
|
170 180 190
....*....|....*....|....*....|....*....
gi 2045876399 848 MMRTI---ADSGVSILL-VEQNARASLALADRAYVLSRG 882
Cdd:cd03232 147 IVRFLkklADSGQAILCtIHQPSASIFEKFDRLLLLKRG 185
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
655-895 |
2.44e-14 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 77.06 E-value: 2.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 655 VLETPSSSDR-----QGSEALLRLVGVSAGYGVE--PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDL 727
Cdd:TIGR02203 310 LLDSPPEKDTgtraiERARGDVEFRNVTFRYPGRdrPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 728 SWEGEPLsgwpRHQAAASARRGIGHIPEGRGIFPDlTVKENLDLGSfaapSRSVSPEDLERVL--GYFPILGDRL----- 800
Cdd:TIGR02203 390 LLDGHDL----ADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQADRAEIERALaaAYAQDFVDKLplgld 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 801 ---GQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL----APLISQQVFNMM--RTIadsgvsilLVEQNARASLA 871
Cdd:TIGR02203 461 tpiGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALdnesERLVQAALERLMqgRTT--------LVIAHRLSTIE 532
|
250 260
....*....|....*....|....
gi 2045876399 872 LADRAYVLSRGRVVLSGPADEVAA 895
Cdd:TIGR02203 533 KADRIVVMDDGRIVERGTHNELLA 556
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
683-884 |
2.58e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 76.69 E-value: 2.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 683 EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprHQAAASARRGIGHIPEGR---GI 759
Cdd:PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINN---HNANEAINHGFALVTEERrstGI 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 FPDLTVK-----ENLD--LGSFAAPSRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDE 832
Cdd:PRK10982 338 YAYLDIGfnsliSNIRnyKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 833 PSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRV 884
Cdd:PRK10982 418 PTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
669-833 |
3.82e-14 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 76.53 E-value: 3.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGE---------PlsgwPR 739
Cdd:PRK11147 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDlivarlqqdP----PR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 740 HQA-------AAsarrGIGHIPEGRGIFPDLTVKENLDlgsfaaPSRSVSPEdLERVLGYFPILG---------DRLGQL 803
Cdd:PRK11147 78 NVEgtvydfvAE----GIEEQAEYLKRYHDISHLVETD------PSEKNLNE-LAKLQEQLDHHNlwqlenrinEVLAQL 146
|
170 180 190
....*....|....*....|....*....|....*..
gi 2045876399 804 A-------GTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:PRK11147 147 GldpdaalSSLSGGWLRKAALGRALVSNPDVLLLDEP 183
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
670-861 |
4.71e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 71.90 E-value: 4.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhQAAASARRG 749
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK-----KDLCTYQKQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 750 IGHIPEGRGIFPDLTVKENLdLGSFAAPSRSVSPEDLERVLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLM 829
Cdd:PRK13540 76 LCFVGHRSGINPYLTLRENC-LYDIHFSPGAVGITELCRLFS----LEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL 150
|
170 180 190
....*....|....*....|....*....|..
gi 2045876399 830 LDEPSLGLAPLISQQVFNMMRTIADSGVSILL 861
Cdd:PRK13540 151 LDEPLVALDELSLLTIITKIQEHRAKGGAVLL 182
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
653-870 |
4.92e-14 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 76.87 E-value: 4.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 653 DPVLETPSSSDRQGSEALLRLVGVSAGY--GVEPVLRELDLTVGKGEIVALLGANGAGKSTVL----RTIS--GVIPADS 724
Cdd:TIGR01271 1200 VLVIENPHAQKCWPSGGQMDVQGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLsallRLLSteGEIQIDG 1279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 725 gdLSWEGEPLSGWprhqaaasaRRGIGHIPEGRGIFPDlTVKENLDlgsfaaPSRSVSPEDLERV---------LGYFPi 795
Cdd:TIGR01271 1280 --VSWNSVTLQTW---------RKAFGVIPQKVFIFSG-TFRKNLD------PYEQWSDEEIWKVaeevglksvIEQFP- 1340
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 796 lgDRLG-QLAG---TLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPlISQQVFNMMRTIADSGVSILLVEQNARASL 870
Cdd:TIGR01271 1341 --DKLDfVLVDggyVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP-VTLQIIRKTLKQSFSNCTVILSEHRVEALL 1416
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
685-895 |
5.19e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 75.61 E-value: 5.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGV--IPADSGDL----------------SWEGEPLSG---------- 736
Cdd:TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIiyhvalcekcgyverpSKVGEPCPVcggtlepeev 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 737 --W-PRHQAAASARRGIGhIPEGR--GIFPDLTVKENL-----DLGSFAAPSRSVSPEDLERVLgyfpiLGDRLGQLAGT 806
Cdd:TIGR03269 95 dfWnLSDKLRRRIRKRIA-IMLQRtfALYGDDTVLDNVlealeEIGYEGKEAVGRAVDLIEMVQ-----LSHRITHIARD 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 807 LSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRT-IADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEaVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK 248
|
250
....*....|
gi 2045876399 886 LSGPADEVAA 895
Cdd:TIGR03269 249 EEGTPDEVVA 258
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
685-893 |
5.54e-14 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 73.32 E-value: 5.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAD--------SGDLSWEGEPLSGWPRHQAAasARRGIghIPE- 755
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAIDAPRLA--RLRAV--LPQa 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 756 GRGIFPdLTVKENLDLGSFAAPSRSVSPEDLERVLGYFPILGDRLGQLAG----TLSGGEQQMLAIARAL---------L 822
Cdd:PRK13547 92 AQPAFA-FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGrdvtTLSGGELARVQFARVLaqlwpphdaA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIA-DSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLArDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
598-832 |
1.19e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 74.86 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 598 QNLLFGIALLLVLFLAPRG-LAGlleRATLA-----------------ALGF--RERRAARA------HGLEIGPEretV 651
Cdd:COG5265 269 QALIIALGLTAMMLMAAQGvVAG---TMTVGdfvlvnayliqlyiplnFLGFvyREIRQALAdmermfDLLDQPPE---V 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 652 ADPvletPSSSDRQGSEALLRLVGVSAGYGVE-PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWE 730
Cdd:COG5265 343 ADA----PDAPPLVVGGGEVRFENVSFGYDPErPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILID 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 731 GEPLsgwpRHQAAASARRGIGHIPEGRGIFPDlTVKENLDLGSFAApsrsvSPEDLERVL--------------GYFPIL 796
Cdd:COG5265 419 GQDI----RDVTQASLRAAIGIVPQDTVLFND-TIAYNIAYGRPDA-----SEEEVEAAAraaqihdfieslpdGYDTRV 488
|
250 260 270
....*....|....*....|....*....|....*..
gi 2045876399 797 GDRlgqlaG-TLSGGEQQMLAIARALLSRPRLLMLDE 832
Cdd:COG5265 489 GER-----GlKLSGGEKQRVAIARTLLKNPPILIFDE 520
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
689-899 |
1.29e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 74.50 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 689 LDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAdSGDLSWEGEPLsgwpRHQAAASARRGIG------HIPEGrgifpd 762
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIEL----RELDPESWRKHLSwvgqnpQLPHG------ 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLDLGSFAApsrsvSPEDLERVL--------------GYFPILGDRlgqlAGTLSGGEQQMLAIARALLSRPRLL 828
Cdd:PRK11174 438 -TLRDNVLLGNPDA-----SDEQLQQALenawvseflpllpqGLDTPIGDQ----AAGLSVGQAQRLALARALLQPCQLL 507
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 829 MLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQnaRASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:PRK11174 508 LLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGL 576
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
672-844 |
2.40e-13 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 74.39 E-value: 2.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 672 RLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwPRHQAAASARrgIG 751
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMAD-ARHRRAVCPR--IA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 752 HIPEGRG--IFPDLTVKENLD----LGSFAAPSRSVSPEDLERVLGYFPILgDRlgqLAGTLSGGEQQMLAIARALLSRP 825
Cdd:NF033858 80 YMPQGLGknLYPTLSVFENLDffgrLFGQDAAERRRRIDELLRATGLAPFA-DR---PAGKLSGGMKQKLGLCCALIHDP 155
|
170
....*....|....*....
gi 2045876399 826 RLLMLDEPSLGLAPLISQQ 844
Cdd:NF033858 156 DLLILDEPTTGVDPLSRRQ 174
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
686-891 |
3.27e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 71.07 E-value: 3.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprhqaAASARRGIGHIPEGRGI---FPD 762
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR-------QALQKNLVAYVPQSEEVdwsFPV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 LtVKENLDLGSFAAPS--RSVSPEDLERV---LGYFPILGDRLGQLaGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL 837
Cdd:PRK15056 96 L-VEDVVMMGRYGHMGwlRRAKKRDRQIVtaaLARVDMVEFRHRQI-GELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 838 APLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAyVLSRGRVVLSGPAD 891
Cdd:PRK15056 174 DVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT-VMVKGTVLASGPTE 226
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
684-851 |
5.61e-13 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 67.56 E-value: 5.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLswegeplsgwprhqaaasarrgigHIPEGRGIFpdl 763
Cdd:cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI------------------------GMPEGEDLL--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 tvkenldlgsFAaPSRSvspedlervlgYFPiLGDRLGQLA----GTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAP 839
Cdd:cd03223 68 ----------FL-PQRP-----------YLP-LGTLREQLIypwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
|
170
....*....|..
gi 2045876399 840 LISQQVFNMMRT 851
Cdd:cd03223 125 ESEDRLYQLLKE 136
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
671-833 |
6.23e-13 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 72.23 E-value: 6.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWegeplsgwprhqaAASARrgI 750
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW-------------SENAN--I 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 751 GHIPEgrgifpDLTVKENLDLGSFAAPSRSVSPEDLERV----LGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPR 826
Cdd:PRK15064 385 GYYAQ------DHAYDFENDLTLFDWMSQWRQEGDDEQAvrgtLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN 458
|
....*..
gi 2045876399 827 LLMLDEP 833
Cdd:PRK15064 459 VLVMDEP 465
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
667-862 |
6.53e-13 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 68.97 E-value: 6.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWP----RHQA 742
Cdd:PRK10247 4 NSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKpeiyRQQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 743 AASARRGIghipegrgIFPDlTVKENLdlgSFAAPSRSVSPED--LERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARA 820
Cdd:PRK10247 84 SYCAQTPT--------LFGD-TVYDNL---IFPWQIRNQQPDPaiFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2045876399 821 LLSRPRLLMLDEPSLGLAPLISQQVFNMM-RTIADSGVSILLV 862
Cdd:PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIhRYVREQNIAVLWV 194
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
12-274 |
7.78e-13 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 69.61 E-value: 7.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 12 GLLYAIAGLGFVVIYRTSKVLNFAMGGLGAVVAYVASDLIDLGLPyPVVVLLGLLVGGLLGALLELAIARPLRDRPhltv 91
Cdd:cd06574 1 GLIYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYN-PWLALIAAILAGAAAGLVTGFLHTRLKING---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 92 alaTLGALLILEGLVGLRYGFAPQSLAPAFDRGVGLDVGPISISTNQLFVAGMGLVATVVLFAIV---MRTRLGLGMRAV 168
Cdd:cd06574 76 ---LLAGILIMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLViwfLRTKLGLAMRAT 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 169 SSGPLTAQLLGVDVGRVRMSAWILGGVYGGLA-ALLVTPLTYLSPGSFTIFLLTAFAAVVLGGFT--------SVIGVVI 239
Cdd:cd06574 153 GDNPDMARSLGINVDRTRILGLVISNALAALGgALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIvgrrtikaSILGVII 232
|
250 260 270
....*....|....*....|....*....|....*
gi 2045876399 240 GALVFGVATNLLltyLDSSLISTYTFLGVALVLVL 274
Cdd:cd06574 233 GAILYRIALALA---LGSGLIPSDLKLITAGVIVL 264
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
675-834 |
8.54e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 71.89 E-value: 8.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 675 GVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWeGEPLSgwprhqaaasarrgIGHIP 754
Cdd:TIGR03719 327 NLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETVK--------------LAYVD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 755 EGR-GIFPDLTVKEN-------LDLGSFAAPSRSvspedlerVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPR 826
Cdd:TIGR03719 392 QSRdALDPNKTVWEEisggldiIKLGKREIPSRA--------YVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGN 463
|
....*...
gi 2045876399 827 LLMLDEPS 834
Cdd:TIGR03719 464 VLLLDEPT 471
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
684-899 |
8.87e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 72.06 E-value: 8.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHqaaaSARRGIGHIPEGRGIFPDl 763
Cdd:TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH----YLHRQVALVGQEPVLFSG- 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDLGSFAAPS---RSVSPED------LERVLGYFPILGDRLGQLagtlSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:TIGR00958 570 SVRENIAYGLTDTPDeeiMAAAKAAnahdfiMEFPNGYDTEVGEKGSQL----SGGQKQRIAIARALVRKPRVLILDEAT 645
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 835 LGLAPLISQQVFNMMRTiadSGVSILLVEQnaRASLAL-ADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:TIGR00958 646 SALDAECEQLLQESRSR---ASRTVLLIAH--RLSTVErADQILVLKKGSVVEMGTHKQLMEDQGC 706
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
670-834 |
1.03e-12 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 71.74 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 LLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSW-EGEPLSGWPRHQ-----AA 743
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLaKGIKLGYFAQHQleflrAD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 744 ASARRGIGHIpegrgifpdltvkenldlgsfaAPsrSVSPEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLS 823
Cdd:PRK10636 392 ESPLQHLARL----------------------AP--QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ 447
|
170
....*....|.
gi 2045876399 824 RPRLLMLDEPS 834
Cdd:PRK10636 448 RPNLLLLDEPT 458
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
684-897 |
1.06e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 68.96 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAD----SGDLSWEGEPLsgwprhqaAASARRGIgHIP----E 755
Cdd:PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGvrqtAGRVLLDGKPV--------APCALRGR-KIAtimqN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 756 GRGIF-PDLT----VKENL-------DLGSFAAPSRSVSPEDLERVLGYFPIlgdrlgqlagTLSGGEQQMLAIARALLS 823
Cdd:PRK10418 88 PRSAFnPLHTmhthARETClalgkpaDDATLTAALEAVGLENAARVLKLYPF----------EMSGGMLQRMMIALALLC 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFNM-MRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLlESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAP 232
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
684-884 |
1.21e-12 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 68.27 E-value: 1.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWpRHQAAASARRGIGHIPegrgIFPDL 763
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY-EHKYLHSKVSLVGQEP----VLFAR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDLGSFAAPSRSVSPED---------LERVLGYFPILGDRLGQLagtlSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:cd03248 103 SLQDNIAYGLQSCSFECVKEAAqkahahsfiSELASGYDTEVGEKGSQL----SGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2045876399 835 LGLAPLISQQVFNMMRTiADSGVSILLVEQNARaSLALADRAYVLSRGRV 884
Cdd:cd03248 179 SALDAESEQQVQQALYD-WPERRTVLVIAHRLS-TVERADQILVLDGGRI 226
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
674-885 |
1.58e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.89 E-value: 1.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 674 VGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPAD-----SGDLSWEGEPLSgwprhQAAASARR 748
Cdd:PRK15134 13 VAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPpvvypSGDIRFHGESLL-----HASEQTLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIghipegRG-----IFPDLTVKEN--------------LDLGSFAAPSRSVSPEDLERVLGYFPilGDRLGQLAGTLSG 809
Cdd:PRK15134 88 GV------RGnkiamIFQEPMVSLNplhtlekqlyevlsLHRGMRREAARGEILNCLDRVGIRQA--AKRLTDYPHQLSG 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 810 GEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELqQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
671-874 |
1.76e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 68.52 E-value: 1.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 671 LRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADS-----GDLSWEGEPLsgWPRHQAAAS 745
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNI--YERRVNLNR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 746 ARRGIGHIPEGRGIFPdLTVKENLDLGSfaapsrsvspedleRVLGYFPIL-------------------GDRLGQLAGT 806
Cdd:PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGV--------------KIVGWRPKLeiddivesalkdadlwdeiKHKIHKSALD 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 807 LSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIA-DSGVSILLVEQNARASLALAD 874
Cdd:PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNLHQVSRLSD 219
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
667-903 |
1.84e-12 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 68.66 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWprhQAAASA 746
Cdd:PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW---SSKAFA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRgIGHIPEGRGIFPDLTVKENLDLGSF---AAPSRsVSPEDLERVLGYFPILGDR--LGQLAGTLSGGEQQMLAIARAL 821
Cdd:PRK10575 85 RK-VAYLPQQLPAAEGMTVRELVAIGRYpwhGALGR-FGAADREKVEEAISLVGLKplAHRLVDSLSGGERQRAWIAMLV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 822 LSRPRLLMLDEPSLGLAplISQQVFNM---MRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:PRK10575 163 AQDSRCLLLDEPTSALD--IAHQVDVLalvHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGET 240
|
....*
gi 2045876399 899 LTGSY 903
Cdd:PRK10575 241 LEQIY 245
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
667-880 |
2.58e-12 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 67.18 E-value: 2.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASa 746
Cdd:PRK13543 8 APPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 rrgIGHIPegrGIFPDLTVKENLD-LGSFAAPSRSVSPEDLERVLGyfpiLGDRLGQLAGTLSGGEQQMLAIARALLSRP 825
Cdd:PRK13543 87 ---LGHLP---GLKADLSTLENLHfLCGLHGRRAKQMPGSALAIVG----LAGYEDTLVRQLSAGQKKRLALARLWLSPA 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLS 880
Cdd:PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
685-899 |
2.68e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 68.72 E-value: 2.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLS-----------WEGEPLSGWPRH-QAAASARRGIGH 752
Cdd:PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQvgdiyigdkknNHELITNPYSKKiKNFKELRRRVSM 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 753 I---PEGRgIFPDlTVKENLDLGSFA-----APSRSVSPEDLERV-LGYfpilgDRLGQLAGTLSGGEQQMLAIARALLS 823
Cdd:PRK13631 121 VfqfPEYQ-LFKD-TIEKDIMFGPVAlgvkkSEAKKLAKFYLNKMgLDD-----SYLERSPFGLSGGQKRRVAIAGILAI 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQvfnMMRTIADS---GVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:PRK13631 194 QPEILIFDEPTAGLDPKGEHE---MMQLILDAkanNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHI 269
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
684-893 |
2.91e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 68.19 E-value: 2.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISG-VIPA---------DSGDLS--WEGEPLSGW----PRHQ-AAASA 746
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAlLIPSegkvyvdglDTSDEEnlWDIRNKAGMvfqnPDNQiVATIV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 RRGIGHIPEGRGIFPDlTVKENLDlgsfaapsrsvspEDLERV-----LGYFPILgdrlgqlagtLSGGEQQMLAIARAL 821
Cdd:PRK13633 104 EEDVAFGPENLGIPPE-EIRERVD-------------ESLKKVgmyeyRRHAPHL----------LSGGQKQRVAIAGIL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVFNMMRTIAD-SGVSILLVEQNARASlALADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKkYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKEI 231
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
692-897 |
4.29e-12 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 68.45 E-value: 4.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 692 TVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwPRHQAAASARRGIGHI---PEGrGIFPDLTVKE- 767
Cdd:PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK-ADPEAQKLLRQKIQIVfqnPYG-SLNPRKKVGQi 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 768 -------NLDLGsfAAPSRSVSPEDLERVlGYFPILGDRLGQLagtLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPL 840
Cdd:PRK11308 115 leeplliNTSLS--AAERREKALAMMAKV-GLRPEHYDRYPHM---FSGGQRQRIAIARALMLDPDVVVADEPVSALDVS 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 841 ISQQVFN-MMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK11308 189 VQAQVLNlMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
685-895 |
4.56e-12 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 70.52 E-value: 4.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIP----ADSGDLSWEGEPLSGWPRHQAAASArrgigHIPEGRGIF 760
Cdd:TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDgfhiGVEGVITYDGITPEEIKKHYRGDVV-----YNAETDVHF 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 PDLTVKENLDlgsFAAPSRSVS--PEDLER-------VLGYFPILGdrLGQLAGT---------LSGGEQQMLAIARALL 822
Cdd:TIGR00956 151 PHLTVGETLD---FAARCKTPQnrPDGVSReeyakhiADVYMATYG--LSHTRNTkvgndfvrgVSGGERKRVSIAEASL 225
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIAD-----SGVSILLVEQNArasLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANildttPLVAIYQCSQDA---YELFDKVIVLYEGYQIYFGPADKAKQ 300
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
592-905 |
4.65e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 70.39 E-value: 4.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 592 GGSGIPQNLLFGIALLLVLFLAPRGLAGLLERATLAALGFRerraaRAHGLEIGPERETVADPVLE--TPSSSDRQGSEA 669
Cdd:PLN03232 549 GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQ-----RIEELLLSEERILAQNPPLQpgAPAISIKNGYFS 623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 670 L-LRLVgvsagygvEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPadsgdlswegeplsgwPRHQAAASARR 748
Cdd:PLN03232 624 WdSKTS--------KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS----------------HAETSSVVIRG 679
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 GIGHIPEGRGIFpDLTVKENLDLGSFAAPSR---SVSPEDLERVLGYFPilG-DR--LGQLAGTLSGGEQQMLAIARALL 822
Cdd:PLN03232 680 SVAYVPQVSWIF-NATVRENILFGSDFESERywrAIDVTALQHDLDLLP--GrDLteIGERGVNISGGQKQRVSMARAVY 756
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVeQNARASLALADRAYVLSRGRVVLSGPADEVAANPSLTGS 902
Cdd:PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLV-TNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKK 835
|
...
gi 2045876399 903 YLE 905
Cdd:PLN03232 836 LME 838
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
686-895 |
1.05e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 66.66 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGwprhQAAASARRGIGHI---PEGRgiFPD 762
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA----ENVWNLRRKIGMVfqnPDNQ--FVG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 LTVKENLdlgSFAAPSRSVSPEDL----ERVLGYFPILGDRLGQLAgTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLA 838
Cdd:PRK13642 97 ATVEDDV---AFGMENQGIPREEMikrvDEALLAVNMLDFKTREPA-RLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 839 PLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:PRK13642 173 PTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
686-899 |
1.09e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 66.57 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGD-LSWEGEPLSGWPRHQAAASARRGIG---HIPEGRgIFP 761
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQtIVGDYAIPANLKKIKEVKRLRKEIGlvfQFPEYQ-LFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKE----NLDLGSFAAPSRSVSPEDLERVlgyfPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL 837
Cdd:PRK13645 106 ETIEKDiafgPVNLGENKQEAYKKVPELLKLV----QLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 838 APLISQQVFNM-MRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:PRK13645 182 DPKGEEDFINLfERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQEL 244
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
686-875 |
1.19e-11 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 64.27 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISgvipadsgdlswegeplsgwprhqAAASARRGIGHIP---EGRGIFPD 762
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL------------------------YASGKARLISFLPkfsRNKLIFID 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLDLGsfaapsrsvspedlervLGYFPilgdrLGQLAGTLSGGEQQMLAIARALLSRPR--LLMLDEPSLGLAPL 840
Cdd:cd03238 67 -QLQFLIDVG-----------------LGYLT-----LGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQ 123
|
170 180 190
....*....|....*....|....*....|....*
gi 2045876399 841 ISQQVFNMMRTIADSGVSILLVEQNaRASLALADR 875
Cdd:cd03238 124 DINQLLEVIKGLIDLGNTVILIEHN-LDVLSSADW 157
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
603-845 |
1.83e-11 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 67.35 E-value: 1.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 603 GIALLLVL--------FLaprGLAGLLERATLAALGFRERRAAR------AHGleigperETVADPVLETPSSSDRQGS- 667
Cdd:PRK10938 185 GITLVLVLnrfdeipdFV---QFAGVLADCTLAETGEREEILQQalvaqlAHS-------EQLEGVQLPEPDEPSARHAl 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 668 ---EALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIP-ADSGDLSWEGEplsgwprhqaa 743
Cdd:PRK10938 255 panEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPqGYSNDLTLFGR----------- 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 744 asaRRGIG--------HIPegrgifpdlTVKENLDLgsfaapSRSVSPEDLERVL-GYFPILG------DRLGQLAG--- 805
Cdd:PRK10938 324 ---RRGSGetiwdikkHIG---------YVSSSLHL------DYRVSTSVRNVILsGFFDSIGiyqavsDRQQKLAQqwl 385
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 806 ---------------TLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQV 845
Cdd:PRK10938 386 dilgidkrtadapfhSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLV 440
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
683-899 |
2.12e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 65.59 E-value: 2.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 683 EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGD---LSWEGEPLSgwprhqaaasaRRGIGHIPEGRGI 759
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskITVDGITLT-----------AKTVWDIREKVGI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 F---PD-----LTVKENLdlgSFAAPSRSVSPEDLERvlgyfpILGDRLGQLAGT---------LSGGEQQMLAIARALL 822
Cdd:PRK13640 89 VfqnPDnqfvgATVGDDV---AFGLENRAVPRPEMIK------IVRDVLADVGMLdyidsepanLSGGQKQRVAIAGILA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIA-DSGVSILLVEQNARASlALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKkKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
685-889 |
2.14e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 68.21 E-value: 2.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVL-----RTISGVIpaDSGDLSWEGEPLSgwprhqaaASARRGIGHIPEGRGI 759
Cdd:TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLnvlaeRVTTGVI--TGGDRLVNGRPLD--------SSFQRSIGYVQQQDLH 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 FPDLTVKENLDLGSFAAPSRSVS-PEDLERVLGYFPILG-----DRLGQLAGT-LSGGEQQMLAIARALLSRPRLLM-LD 831
Cdd:TIGR00956 848 LPTSTVRESLRFSAYLRQPKSVSkSEKMEYVEEVIKLLEmesyaDAVVGVPGEgLNVEQRKRLTIGVELVAKPKLLLfLD 927
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 832 EPSLGLAPLISQQVFNMMRTIADSGVSIL-LVEQNARASLALADRAYVLSRG-RVVLSGP 889
Cdd:TIGR00956 928 EPTSGLDSQTAWSICKLMRKLADHGQAILcTIHQPSAILFEEFDRLLLLQKGgQTVYFGD 987
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
686-897 |
2.19e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 65.62 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIG---HIPEGRgIFPD 762
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSlvfQFPEAQ-LFEN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLDLG--SFAAPSRsvspEDLERVLGYFPILG---DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL 837
Cdd:PRK13641 102 -TVLKDVEFGpkNFGFSED----EAKEKALKWLKKVGlseDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 838 APLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK13641 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
677-883 |
2.29e-11 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 64.03 E-value: 2.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 677 SAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGE----PLSGWprhqaaasarrgigh 752
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSiayvSQEPW--------------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 753 ipegrgIFPDlTVKENLDLGSfaapsrSVSPEDLERVLGY---------FPiLGDR--LGQLAGTLSGGEQQMLAIARAL 821
Cdd:cd03250 77 ------IQNG-TIRENILFGK------PFDEERYEKVIKAcalepdleiLP-DGDLteIGEKGINLSGGQKQRISLARAV 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 822 LSRPRLLMLDEPSLGLAPLISQQVF-NMMRTIADSGVSILLVEQNARAsLALADRAYVLSRGR 883
Cdd:cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFeNCILGLLLNNKTRILVTHQLQL-LPHADQIVVLDNGR 204
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
691-897 |
2.30e-11 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 66.08 E-value: 2.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 691 LTVGKGEIVALLGANGAGKSTVLRTISGVIP------ADSgdLSWEGEPLSGWPRHQAaasaRRGIGHipEGRGIF---- 760
Cdd:COG4170 28 LTLNEGEIRGLVGESGSGKSLIAKAICGITKdnwhvtADR--FRWNGIDLLKLSPRER----RKIIGR--EIAMIFqeps 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 ----PDLTVKENLdlgSFAAPSRS----------------------VSPEDLERVLGYFPIlgdrlgqlagTLSGGEQQM 814
Cdd:COG4170 100 scldPSAKIGDQL---IEAIPSWTfkgkwwqrfkwrkkraiellhrVGIKDHKDIMNSYPH----------ELTEGECQK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 815 LAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMM-RTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:COG4170 167 VMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLaRLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQI 246
|
....
gi 2045876399 894 AANP 897
Cdd:COG4170 247 LKSP 250
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
686-885 |
2.65e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 65.57 E-value: 2.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIG---HIPEGRgIFPD 762
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGmvfQFPESQ-LFED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLDLG--SFAAPSRSVSpEDLERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPL 840
Cdd:PRK13646 102 -TVEREIIFGpkNFKMNLDEVK-NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2045876399 841 ISQQVFNMMRTIA-DSGVSILLVEQNARASLALADRAYVLSRGRVV 885
Cdd:PRK13646 180 SKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
767-904 |
2.76e-11 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 67.73 E-value: 2.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 767 ENLDLGSF-AAPSRSVSPEDLERV-------LGYFpilgdRLGQLAGTLSGGEQQMLAIARALLSRPR--LLMLDEPSLG 836
Cdd:TIGR00630 446 NQLTLTPEeKKIAEEVLKEIRERLgflidvgLDYL-----SLSRAAGTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIG 520
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 837 LAPLISQQVFNMMRTIADSGVSILLVEQNARAsLALADR-------AYVLSrGRVVLSGPADEVAANP-SLTGSYL 904
Cdd:TIGR00630 521 LHQRDNRRLINTLKRLRDLGNTLIVVEHDEDT-IRAADYvidigpgAGEHG-GEVVASGTPEEILANPdSLTGQYL 594
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
646-863 |
4.03e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 66.76 E-value: 4.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 646 PERETVADPVLETPSSSDRQGSEALlrlvGVSAGYgvepvlreldltVGKGEIVALLGANGAGKSTVLRTISGVIPADSG 725
Cdd:PRK13409 331 PRDESERETLVEYPDLTKKLGDFSL----EVEGGE------------IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 726 DLSWEGEplsgwprhqaaasarrgIGHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSP--EDLERVLGYFPILGDRLgql 803
Cdd:PRK13409 395 EVDPELK-----------------ISYKPQYIKPDYDGTVEDLL---RSITDDLGSSYykSEIIKPLQLERLLDKNV--- 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 804 aGTLSGGEQQMLAIARALLSRPRLLMLDEPSlglAPLISQQVFNMMRTI----ADSGVSILLVE 863
Cdd:PRK13409 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPS---AHLDVEQRLAVAKAIrriaEEREATALVVD 511
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
675-834 |
4.27e-11 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 66.68 E-value: 4.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 675 GVSAGYGvEPVLRE-LDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWeGEPLSgwprhqaaasarrgIGHI 753
Cdd:PRK11819 329 NLSKSFG-DRLLIDdLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVK--------------LAYV 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 754 PEGR-GIFPDLTVKEN-------LDLGSFAAPSRSvspedlerVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRP 825
Cdd:PRK11819 393 DQSRdALDPNKTVWEEisggldiIKVGNREIPSRA--------YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGG 464
|
....*....
gi 2045876399 826 RLLMLDEPS 834
Cdd:PRK11819 465 NVLLLDEPT 473
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
686-897 |
6.79e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 64.27 E-value: 6.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIG---HIPEGRgIFPD 762
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGivfQFPEHQ-LFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLdlgSFAAPSRSVSPEDLERvlgyfpiLGDRLGQLAG-----------TLSGGEQQMLAIARALLSRPRLLMLD 831
Cdd:PRK13634 102 -TVEKDI---CFGPMNFGVSEEDAKQ-------KAREMIELVGlpeellarspfELSGGQMRRVAIAGVLAMEPEVLVLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 832 EPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK13634 171 EPTAGLDPKGRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
685-898 |
1.05e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 65.11 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKST----VLRTIsgvipADSGDLSWEGEPLSGWPRHQAAASARR--GIGHIPEGrG 758
Cdd:PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI-----NSQGEIWFDGQPLHNLNRRQLLPVRHRiqVVFQDPNS-S 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 759 IFPDLTVKENLDLGsFAAPSRSVSPEDLE-RVLGYFPILG---DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:PRK15134 375 LNPRLNVLQIIEEG-LRVHQPTLSAAQREqQVIAVMEEVGldpETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPT 453
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 835 LGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:PRK15134 454 SSLDKTVQAQILALLKSLqQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
696-895 |
1.35e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 65.29 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 696 GEIVALLGANGAGKSTVLRTISGVIPADSgdlsWEGEPLSGwPRHQAAASARRgIGHIPEGRGIFPDLTVKENLDLGSFA 775
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNN----FTGTILAN-NRKPTKQILKR-TGFVTQDDILYPHLTVRETLVFCSLL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 776 APSRSVSPEDLERV-------LGYFPILGDRLGQ-LAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFN 847
Cdd:PLN03211 168 RLPKSLTKQEKILVaesviseLGLTKCENTIIGNsFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL 247
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2045876399 848 MMRTIADSGVSILL-VEQNARASLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:PLN03211 248 TLGSLAQKGKTIVTsMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
682-846 |
1.76e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 62.95 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 682 VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGvipadsgdlswEGEPLSGWPRHqaaaSARrgIGHIPEGRGIFP 761
Cdd:cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG-----------ELEPSEGKIKH----SGR--ISFSSQFSWIMP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DlTVKENLDLGSFAAPSR---SVSPEDLERVLGYFPILGDR-LGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL 837
Cdd:cd03291 112 G-TIKENIIFGVSYDEYRyksVVKACQLEEDITKFPEKDNTvLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
....*....
gi 2045876399 838 APLISQQVF 846
Cdd:cd03291 191 DVFTEKEIF 199
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
806-904 |
3.14e-10 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 64.46 E-value: 3.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 806 TLSGGEQQMLAIARALLSRPRLLM--LDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARAsLALADR-------A 876
Cdd:PRK00635 476 TLSGGEQERTALAKHLGAELIGITyiLDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQM-ISLADRiidigpgA 554
|
90 100
....*....|....*....|....*....
gi 2045876399 877 YVLSrGRVVLSG-PADEVAANPSLTGSYL 904
Cdd:PRK00635 555 GIFG-GEVLFNGsPREFLAKSDSLTAKYL 582
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
692-844 |
3.30e-10 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 61.27 E-value: 3.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 692 TVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaasarrgighIPEGRGIFPDLTVKENLDL 771
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYI-----------KADYEGTVRDLLSSITKDF 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 772 GSFAA-PSRSVSPEDLERVlgyfpilgdrLGQLAGTLSGGEQQMLAIArALLSRP-RLLMLDEPSlglAPLISQQ 844
Cdd:cd03237 90 YTHPYfKTEIAKPLQIEQI----------LDREVPELSGGELQRVAIA-ACLSKDaDIYLLDEPS---AYLDVEQ 150
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
684-892 |
4.26e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 63.21 E-value: 4.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELD---LTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwpRHQAAASARRGIGHIPEGRGIF 760
Cdd:PRK10982 9 PGVKALDnvnLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID---FKSSKEALENGISMVHQELNLV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 PDLTVKENLDLGSFAAPSRSVSPE----DLERVLGYFPILGDRLGQLAgTLSGGEQQMLAIARALLSRPRLLMLDEPSLG 836
Cdd:PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDkmyrDTKAIFDELDIDIDPRAKVA-TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 837 LAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADE 892
Cdd:PRK10982 165 LTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
692-863 |
5.30e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 62.88 E-value: 5.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 692 TVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEplsgwprhqaaasarrgIGHIPEGRGIFPDLTVKENLdl 771
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLK-----------------ISYKPQYISPDYDGTVEEFL-- 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 772 gsfaapsRSVSPEDLERVLgYFPILGDRLG------QLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSlglAPLISQQV 845
Cdd:COG1245 423 -------RSANTDDFGSSY-YKTEIIKPLGleklldKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS---AHLDVEQR 491
|
170 180
....*....|....*....|..
gi 2045876399 846 FNMMRTI----ADSGVSILLVE 863
Cdd:COG1245 492 LAVAKAIrrfaENRGKTAMVVD 513
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
684-833 |
5.54e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.03 E-value: 5.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVipadsgDLSWEGEplsgwprhqAAASARRGIGHIPEGRGIFPDL 763
Cdd:TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV------DKDFNGE---------ARPQPGIKVGYLPQEPQLDPTK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDLG---------SFAAPSRSVSPEDLErvlgyFPILGDRLGQL------------------------------- 803
Cdd:TIGR03719 84 TVRENVEEGvaeikdaldRFNEISAKYAEPDAD-----FDKLAAEQAELqeiidaadawdldsqleiamdalrcppwdad 158
|
170 180 190
....*....|....*....|....*....|
gi 2045876399 804 AGTLSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
685-896 |
7.04e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 61.26 E-value: 7.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSW----------EGEPLSGWPRHQAAASARRGIGHIP 754
Cdd:PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWifkdeknkkkTKEKEKVLEKLVIQKTRFKKIKKIK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 755 EGR---GI---FPDL-----TVKENLdlgSFAAPSRSVSPED-LERVLGYFPILG---DRLGQLAGTLSGGEQQMLAIAR 819
Cdd:PRK13651 102 EIRrrvGVvfqFAEYqlfeqTIEKDI---IFGPVSMGVSKEEaKKRAAKYIELVGldeSYLQRSPFELSGGQKRRVALAG 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 820 ALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:PRK13651 179 ILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
690-839 |
1.53e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 62.06 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 690 DLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwPRHQAaasARRGIGHIPEGRGIFPDLTVKENL 769
Cdd:NF033858 286 SFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD--AGDIA---TRRRVGYMSQAFSLYGELTVRQNL 360
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 770 DLGS--FAAPSRSVsPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAP 839
Cdd:NF033858 361 ELHArlFHLPAAEI-AARVAEMLERFD-LADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDP 430
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
685-861 |
1.67e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 58.34 E-value: 1.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsarrgIGHipeGRGIFPDLT 764
Cdd:PRK13541 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY-----IGH---NLGLKLEMT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 765 VKENLDLGSfaapSRSVSPEDLERVLGYFPiLGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQ 844
Cdd:PRK13541 87 VFENLKFWS----EIYNSAETLYAAIHYFK-LHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDL 161
|
170
....*....|....*..
gi 2045876399 845 VFNMMRTIADSGVSILL 861
Cdd:PRK13541 162 LNNLIVMKANSGGIVLL 178
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
686-893 |
1.73e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 59.76 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwprHQAAASARRGIGHI---PEGRgiFPD 762
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAIT----DDNFEKLRKHIGIVfqnPDNQ--FVG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 LTVKENLDLG--SFAAPS---RSVSPEDLERVLGYfpilgDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL 837
Cdd:PRK13648 99 SIVKYDVAFGleNHAVPYdemHRRVSEALKQVDML-----ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 838 APLISQQVFNMMRTI-ADSGVSILLVEQNARASLAlADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK13648 174 DPDARQNLLDLVRKVkSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
637-834 |
1.86e-09 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 61.41 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 637 ARAHGLE-IGPERETVADP--VLETPSSSDRQGSeALLRLVGVSAGYGVEPVL-RELDLTVGKGEIVALLGANGAGKSTV 712
Cdd:PLN03073 473 SRIKALDrLGHVDAVVNDPdyKFEFPTPDDRPGP-PIISFSDASFGYPGGPLLfKNLNFGIDLDSRIAMVGPNGIGKSTI 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 713 LRTISGvipadsgdlswEGEPLSGwprhQAAASARRGIghipegrGIFPDLTVkENLDLGS----FAAPSRSVSPEDLER 788
Cdd:PLN03073 552 LKLISG-----------ELQPSSG----TVFRSAKVRM-------AVFSQHHV-DGLDLSSnpllYMMRCFPGVPEQKLR 608
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2045876399 789 V-LGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPS 834
Cdd:PLN03073 609 AhLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
682-846 |
1.89e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 61.85 E-value: 1.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 682 VEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGvipadsgdlswEGEPLSGWPRHqaaaSARrgIGHIPEGRGIFP 761
Cdd:TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG-----------ELEPSEGKIKH----SGR--ISFSPQTSWIMP 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DlTVKENLDLGSFAAPSRSVS---PEDLERVLGYFPiLGDR--LGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLG 836
Cdd:TIGR01271 501 G-TIKDNIIFGLSYDEYRYTSvikACQLEEDIALFP-EKDKtvLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH 578
|
170
....*....|
gi 2045876399 837 LAPLISQQVF 846
Cdd:TIGR01271 579 LDVVTEKEIF 588
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
684-891 |
2.30e-09 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 58.88 E-value: 2.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGViPA---DSGDLSWEGEPLSGWPrhqaaasarrgighiPEGR--- 757
Cdd:CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAykiLEGDILFKGESILDLE---------------PEERahl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 758 GIF---------PDLTvkeNLDLGSFAAPSRSVSPEDLE-RVLGYFPILGDRLgQLAGT------------LSGGEQQML 815
Cdd:CHL00131 85 GIFlafqypieiPGVS---NADFLRLAYNSKRKFQGLPElDPLEFLEIINEKL-KLVGMdpsflsrnvnegFSGGEKKRN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 816 AIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNAR-ASLALADRAYVLSRGRVVLSGPAD 891
Cdd:CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRlLDYIKPDYVHVMQNGKIIKTGDAE 237
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
691-897 |
2.62e-09 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 59.82 E-value: 2.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 691 LTVGKGEIVALLGANGAGKSTVLRTISGV------IPADSG-----DLswegepLSGWPRHQaaasaRRGIGHipEGRGI 759
Cdd:PRK15093 28 MTLTEGEIRGLVGESGSGKSLIAKAICGVtkdnwrVTADRMrfddiDL------LRLSPRER-----RKLVGH--NVSMI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 FPDltVKENLDlgsfaaPSRSVSPEDLERVLGY-----------------FPIL--------GDRLGQLAGTLSGGEQQM 814
Cdd:PRK15093 95 FQE--PQSCLD------PSERVGRQLMQNIPGWtykgrwwqrfgwrkrraIELLhrvgikdhKDAMRSFPYELTEGECQK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 815 LAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMM-RTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEV 893
Cdd:PRK15093 167 VMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLtRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
|
....
gi 2045876399 894 AANP 897
Cdd:PRK15093 247 VTTP 250
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
139-274 |
2.83e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 58.60 E-value: 2.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 139 LFVAGMGLVATVVLFAIVMRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAA--LLVTPLTYLSPGSFT 216
Cdd:cd06580 95 SYLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGayLVLGVQGRFTEGMSA 174
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2045876399 217 IFLLTAFAAVVLGGFtSVIGVVIGALVFGVATNLlltyldSSLISTYTFLGVALVLVL 274
Cdd:cd06580 175 GYGFIAIAVALLGRW-NPLGILLAALLFGALEAG------GIALQRSGGVPSELVQVL 225
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
667-862 |
4.16e-09 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 57.66 E-value: 4.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 667 SEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgWPRhqaaasa 746
Cdd:COG2401 27 VAIVLEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQ-FGR------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 747 rrgighipegrgifpDLTVKENLD-LGSFAApsrsvSPEDLERVlGyfpiLGDRLGQLA--GTLSGGEQQMLAIARALLS 823
Cdd:COG2401 99 ---------------EASLIDAIGrKGDFKD-----AVELLNAV-G----LSDAVLWLRrfKELSTGQKFRFRLALLLAE 153
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2045876399 824 RPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLV 862
Cdd:COG2401 154 RPKLLVIDEFCSHLDRQTAKRVARNLQKLARRaGITLVVA 193
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
654-896 |
4.34e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 60.76 E-value: 4.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 654 PVLETPSSSDRQGSEALLRLVGvsagyGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEP 733
Cdd:PLN03232 1225 PVSGWPSRGSIKFEDVHLRYRP-----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD 1299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 734 LSGWprhqAAASARRGIGHIPEGRGIFPDlTVKENLDlgSFAAPSRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGE-- 811
Cdd:PLN03232 1300 VAKF----GLTDLRRVLSIIPQSPVLFSG-TVRFNID--PFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEnf 1372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 812 ----QQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVfnmMRTIADSGVS-ILLVEQNARASLALADRAYVLSRGRVVL 886
Cdd:PLN03232 1373 svgqRQLLSLARALLRRSKILVLDEATASVDVRTDSLI---QRTIREEFKScTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449
|
250
....*....|
gi 2045876399 887 SGPADEVAAN 896
Cdd:PLN03232 1450 YDSPQELLSR 1459
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
669-833 |
9.18e-09 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 58.32 E-value: 9.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 669 ALLRLVGVSAGY-GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEG------EPlsgwprhq 741
Cdd:PRK11650 2 AGLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGrvvnelEP-------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 742 aaasARRGIGHIPEGRGIFPDLTVKENLdlgSFAAPSRSVSPEDLE-RVLGYFPILGdrLGQL----AGTLSGGEQQMLA 816
Cdd:PRK11650 74 ----ADRDIAMVFQNYALYPHMSVRENM---AYGLKIRGMPKAEIEeRVAEAARILE--LEPLldrkPRELSGGQRQRVA 144
|
170
....*....|....*..
gi 2045876399 817 IARALLSRPRLLMLDEP 833
Cdd:PRK11650 145 MGRAIVREPAVFLFDEP 161
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
599-889 |
1.17e-08 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 59.09 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 599 NLLFGIALLlvlFLAPRG-LAGLLERATLAALGFRERRAARAHGLEIGPERETVADPVLETPSSSDRQGSEALLRLVGVS 677
Cdd:PLN03140 778 NVLFTLALT---YLNPLGkKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVA 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 678 AGYG-VEP--------------------------------VLRELDLTVGKGEIVALLGANGAGKSTVL-----RTISGV 719
Cdd:PLN03140 855 PKRGmVLPftplamsfddvnyfvdmpaemkeqgvtedrlqLLREVTGAFRPGVLTALMGVSGAGKTTLMdvlagRKTGGY 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 720 IpadSGDLSwegepLSGWPRHQAAASarRGIGHIPEGRGIFPDLTVKENLDLGSFAAPSRSVSPED----LERVLGYFPI 795
Cdd:PLN03140 935 I---EGDIR-----ISGFPKKQETFA--RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEkmmfVDEVMELVEL 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 796 --LGDRLGQLAGT--LSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSIL-LVEQNARASL 870
Cdd:PLN03140 1005 dnLKDAIVGLPGVtgLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVcTIHQPSIDIF 1084
|
330 340
....*....|....*....|
gi 2045876399 871 ALADRAYVLSR-GRVVLSGP 889
Cdd:PLN03140 1085 EAFDELLLMKRgGQVIYSGP 1104
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
684-862 |
1.30e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 56.19 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGHIPEGRGIFpDL 763
Cdd:cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDLGSFAAPSRSVSPED---LERVLGYFPiLGDR--LGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLA 838
Cdd:cd03290 94 TVEENITFGSPFNKQRYKAVTDacsLQPDIDLLP-FGDQteIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
|
170 180
....*....|....*....|....*.
gi 2045876399 839 PLISQQVFN--MMRTIADSGVSILLV 862
Cdd:cd03290 173 IHLSDHLMQegILKFLQDDKRTLVLV 198
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
684-897 |
1.47e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 58.57 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwprHQAAASARRG----IGHIPegrGI 759
Cdd:PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL-----TKLQLDSWRSrlavVSQTP---FL 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 FPDlTVKENLDLGSFAApsrsvSPEDLERVL--------------GYFPILGDRlgqlAGTLSGGEQQMLAIARALLSRP 825
Cdd:PRK10789 401 FSD-TVANNIALGRPDA-----TQQEIEHVArlasvhddilrlpqGYDTEVGER----GVMLSGGQKQRISIARALLLNA 470
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 826 RLLMLDEpslGLAPLISQQVFNMMRTIADSGVSILLVEQNARAS-LALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK10789 471 EILILDD---ALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSaLTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
762-904 |
1.50e-08 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 58.88 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKENLDLgsFAA-PS--RSVSPedLERV-LGYfpIlgdRLGQLAGTLSGGEQQMLAIARALLSRPR---LLMLDEPS 834
Cdd:COG0178 787 DMTVEEALEF--FENiPKiaRKLQT--LQDVgLGY--I---KLGQPATTLSGGEAQRVKLASELSKRSTgktLYILDEPT 857
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 835 LGL-----APLIsqQVFNmmrTIADSGVSILLVEQNarasL---ALADraYVL-------SR-GRVVLSGPADEVAANP- 897
Cdd:COG0178 858 TGLhfhdiRKLL--EVLH---RLVDKGNTVVVIEHN----LdviKTAD--WIIdlgpeggDGgGEIVAEGTPEEVAKVKa 926
|
....*..
gi 2045876399 898 SLTGSYL 904
Cdd:COG0178 927 SYTGRYL 933
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
696-897 |
2.37e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 57.94 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 696 GEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAAsARRGIGHIPEG--RGIFPDLTVKENL---- 769
Cdd:PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA-LRRDIQFIFQDpyASLDPRQTVGDSImepl 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 770 ---DLGSFAAPSRSVSpEDLERVlGYFPilgDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVF 846
Cdd:PRK10261 429 rvhGLLPGKAAAARVA-WLLERV-GLLP---EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2045876399 847 NMMRTIA-DSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK10261 504 NLLLDLQrDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENP 555
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
683-832 |
2.86e-08 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 57.34 E-value: 2.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 683 EPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLsgwpRHQAAASARRGIGHIPEGRGIFPD 762
Cdd:PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL----RDYTLASLRNQVALVSQNVHLFND 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 lTVKENLdlgSFAApSRSVSPEDLER------VLGYFPILGDRLGQLAG----TLSGGEQQMLAIARALLSRPRLLMLDE 832
Cdd:PRK11176 432 -TIANNI---AYAR-TEQYSREQIEEaarmayAMDFINKMDNGLDTVIGengvLLSGGQRQRIAIARALLRDSPILILDE 506
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
129-250 |
5.91e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 55.46 E-value: 5.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 129 VGPISISTNQLFVAGMGLVatVVLFAIVMRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAAllvtplT 208
Cdd:COG1079 140 LGPLLFGQSPLVYLALLLV--PLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGG------A 211
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2045876399 209 YLSPGSFTIFLLT--------AFAAVVLGGFTsVIGVVIGALVFGVATNL 250
Cdd:COG1079 212 YLSLGYVGSFTEGmtagrgfiALAAVIFGRWR-PLGALLAALLFGFADAL 260
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
684-899 |
6.60e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 56.67 E-value: 6.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGdlswegeplsgwprhqAAASARRGIGHIPEGRGIFpDL 763
Cdd:PLN03130 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSD----------------ASVVIRGTVAYVPQVSWIF-NA 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 764 TVKENLDLGSFAAPSR---SVSPEDLERVLGYFPiLGD--RLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLA 838
Cdd:PLN03130 694 TVRDNILFGSPFDPERyerAIDVTALQHDLDLLP-GGDltEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 839 PLISQQVFNmmRTIAD--SGVSILLVeQNARASLALADRAYVLSRGRVVLSGPADEVAANPSL 899
Cdd:PLN03130 773 AHVGRQVFD--KCIKDelRGKTRVLV-TNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPL 832
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
762-865 |
7.54e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 56.56 E-value: 7.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKENLDLgsFAA-PSRSVSPEDLERV-LGYFpilgdRLGQLAGTLSGGEQQMLAIARALLSR---PRLLMLDEPSLG 836
Cdd:TIGR00630 790 DMTVEEAYEF--FEAvPSISRKLQTLCDVgLGYI-----RLGQPATTLSGGEAQRIKLAKELSKRstgRTLYILDEPTTG 862
|
90 100
....*....|....*....|....*....
gi 2045876399 837 LAPLISQQVFNMMRTIADSGVSILLVEQN 865
Cdd:TIGR00630 863 LHFDDIKKLLEVLQRLVDKGNTVVVIEHN 891
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
681-834 |
8.29e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 55.95 E-value: 8.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 681 GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQAAASARRGIGHIPEGRGIF 760
Cdd:PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 PDL-----------------TVKENLD-LGSFAAPSRSVSpedLERVLGYfpiLGDRLGQLAGTLSGGEQQMLAIARALL 822
Cdd:PRK10636 92 RQLeaqlhdanerndghaiaTIHGKLDaIDAWTIRSRAAS---LLHGLGF---SNEQLERPVSDFSGGWRMRLNLAQALI 165
|
170
....*....|..
gi 2045876399 823 SRPRLLMLDEPS 834
Cdd:PRK10636 166 CRSDLLLLDEPT 177
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
353-624 |
8.36e-08 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 54.68 E-value: 8.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 353 LFLLATAFAMFVGVLGLnvlagfsgqVSLGQSAFLAIGAYTAAVAVDR-GLPPLVGVALALVVGGGAGL----LLGLPAT 427
Cdd:COG0559 18 YALIALGLTLIFGVMGV---------INFAHGEFVMLGAYVAYTLATLlGLPLWLALLLAVLVAALLGVllerLVIRPLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 428 RLSGIYLTLLTLIFAFALPELIVYLkdvtNGASGLPLTPP-------EFLFVPANMYWFMLAAACAVGAGVMVLAGTRTG 500
Cdd:COG0559 89 GAPPLALLLATIGLSLVLQGLVLLI----FGADPRSFPALlsgsvelGGVSIPAYRLFIIVVALVLLAALWLFLRRTRLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 501 RAWRAVRDSEDGARSLGLKPAGVKLGAFTLGSALAAlGGALGGLLVGFVGPDSyGVFVSIYALLAVVLGGSGSVFGSLLG 580
Cdd:COG0559 165 LAMRAVAQNREAARLMGINVDRVIALTFALGAALAG-LAGVLLAPIYSVSPTM-GFLLGLKAFAAVVLGGLGSIPGAVVG 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2045876399 581 ALFITVVPDVTG---GSGIPQNLLFGIaLLLVLFLAPRGLAGLLERA 624
Cdd:COG0559 243 GLLLGLAESLGAaylPSGYKDVVAFVL-LILVLLVRPQGLFGRKERE 288
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
647-832 |
9.90e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 56.11 E-value: 9.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 647 ERETVADPVLE--TPSSSDRQGSEALLRLVGVSAGYGVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADS 724
Cdd:TIGR00957 1261 ETEKEAPWQIQetAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 725 GDLSWEGEPLSGWPRHqaaaSARRGIGHIPEGRGIFPDlTVKENLDlgsfaaPSRSVSPED------LERVLGYFPILGD 798
Cdd:TIGR00957 1341 GEIIIDGLNIAKIGLH----DLRFKITIIPQDPVLFSG-SLRMNLD------PFSQYSDEEvwwaleLAHLKTFVSALPD 1409
|
170 180 190
....*....|....*....|....*....|....*...
gi 2045876399 799 RL----GQLAGTLSGGEQQMLAIARALLSRPRLLMLDE 832
Cdd:TIGR00957 1410 KLdhecAEGGENLSVGQRQLVCLARALLRKTKILVLDE 1447
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
786-904 |
1.11e-07 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 55.80 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 786 LERV-LGYfpiLgdRLGQLAGTLSGGEQQMLAIARALLSRprlLM-----LDEPSLGLAP-----LIsqqvfNMMRTIAD 854
Cdd:COG0178 469 LVDVgLDY---L--TLDRSAGTLSGGEAQRIRLATQIGSG---LVgvlyvLDEPSIGLHQrdndrLI-----ETLKRLRD 535
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 855 SGVSILLVEQNARASLAlADraYVL-------SR-GRVVLSGPADEVAANP-SLTGSYL 904
Cdd:COG0178 536 LGNTVIVVEHDEDTIRA-AD--YIIdigpgagEHgGEVVAQGTPEEILKNPdSLTGQYL 591
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
701-833 |
1.17e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 55.51 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 701 LLGANGAGKSTVLRTISGVipadsgDLSWEGEplsgwprhqAAASARRGIGHIPEGRGIFPDLTVKENLDLG---SFAAP 777
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGV------DKEFEGE---------ARPAPGIKVGYLPQEPQLDPEKTVRENVEEGvaeVKAAL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 778 SR--SVS-----PEDlervlgYFPILGDRLGQL-------------------------------AGTLSGGEQQMLAIAR 819
Cdd:PRK11819 103 DRfnEIYaayaePDA------DFDALAAEQGELqeiidaadawdldsqleiamdalrcppwdakVTKLSGGERRRVALCR 176
|
170
....*....|....
gi 2045876399 820 ALLSRPRLLMLDEP 833
Cdd:PRK11819 177 LLLEKPDMLLLDEP 190
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
686-901 |
1.28e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 53.97 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSgwPRHQAAASARRGIghipegrgIFPD--- 762
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVN--AENEKWVRSKVGL--------VFQDpdd 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 763 ----LTVKENLdlgSFAAPSRSVSPEDLE-RVLGYFPILG--DRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSL 835
Cdd:PRK13647 91 qvfsSTVWDDV---AFGPVNMGLDKDEVErRVEEALKAVRmwDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2045876399 836 GLAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGpADEVAANPSLTG 901
Cdd:PRK13647 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG-DKSLLTDEDIVE 232
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
646-892 |
1.54e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 54.80 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 646 PERE-TVADPVLET-------PSSSDRQgseallrlvgvsagygvepVLRELDLTVGKGEIVALLGANGAGKSTVLRTIS 717
Cdd:NF040905 247 PERTpKIGEVVFEVknwtvyhPLHPERK-------------------VVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVF 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 718 G-----VIpadSGDLSWEGEPLSGWPRHQAAASarrGIGHIPEGR---GIFPDLTVKENLDLGSFAAPS-RSVSPEDLER 788
Cdd:NF040905 308 GrsygrNI---SGTVFKDGKEVDVSTVSDAIDA---GLAYVTEDRkgyGLNLIDDIKRNITLANLGKVSrRGVIDENEEI 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 789 VL--GY---FPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVE 863
Cdd:NF040905 382 KVaeEYrkkMNIKTPSVFQKVGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVIS 461
|
250 260
....*....|....*....|....*....
gi 2045876399 864 QNARASLALADRAYVLSRGRVVLSGPADE 892
Cdd:NF040905 462 SELPELLGMCDRIYVMNEGRITGELPREE 490
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
762-865 |
3.53e-07 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 52.62 E-value: 3.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKENLDLgsFAA-PSRSVSPEDLERV-LGYFPilgdrLGQLAGTLSGGEQQMLAIARALLSRPR---LLMLDEPSLG 836
Cdd:cd03271 130 DMTVEEALEF--FENiPKIARKLQTLCDVgLGYIK-----LGQPATTLSGGEAQRIKLAKELSKRSTgktLYILDEPTTG 202
|
90 100
....*....|....*....|....*....
gi 2045876399 837 LAPLISQQVFNMMRTIADSGVSILLVEQN 865
Cdd:cd03271 203 LHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
695-863 |
4.58e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 53.63 E-value: 4.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 695 KGEIVALLGANGAGKSTVLRTISGVIPADSGDL----SWEG--EPLSGWPRHQAAASARRG----------IGHIPEgrg 758
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLGDYdeepSWDEvlKRFRGTELQDYFKKLANGeikvahkpqyVDLIPK--- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 759 iFPDLTVKENLDlgsfAAPSRSVSPEDLERvLGYFPILGDRLgqlaGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGLA 838
Cdd:COG1245 175 -VFKGTVRELLE----KVDERGKLDELAEK-LGLENILDRDI----SELSGGELQRVAIAAALLRDADFYFFDEPSSYLD 244
|
170 180
....*....|....*....|....*...
gi 2045876399 839 plISQQVfNMMRTI---ADSGVSILLVE 863
Cdd:COG1245 245 --IYQRL-NVARLIrelAEEGKYVLVVE 269
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
684-897 |
4.96e-07 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 53.71 E-value: 4.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRH------QAAASARRGIGhiPEGR 757
Cdd:PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQvielseQSAAQMRHVRG--ADMA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 758 GIF--------PDLTVKENL--DLGSFAAPSRSVSPEDLERVLGYFPILGDR--LGQLAGTLSGGEQQMLAIARALLSRP 825
Cdd:PRK10261 108 MIFqepmtslnPVFTVGEQIaeSIRLHQGASREEAMVEAKRMLDQVRIPEAQtiLSRYPHQLSGGMRQRVMIAMALSCRP 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRTI-ADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PRK10261 188 AVLIADEPTTALDVTIQAQILQLIKVLqKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAP 260
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
686-863 |
5.21e-07 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 51.49 E-value: 5.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKST-VLRTISGvipadsgdlswEG-----EPLSgwprhqaaASARRGIGHIPEgrgi 759
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSlAFDTIYA-----------EGqrryvESLS--------AYARQFLGQMDK---- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 fPDLTVKENL------DLGSFAAPSRS-----VSPEDLERVLGYFPILGDRLGQL-------------AGTLSGGEQQML 815
Cdd:cd03270 68 -PDVDSIEGLspaiaiDQKTTSRNPRStvgtvTEIYDYLRLLFARVGIRERLGFLvdvglgyltlsrsAPTLSGGEAQRI 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2045876399 816 AIARALLSRPR--LLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVE 863
Cdd:cd03270 147 RLATQIGSGLTgvLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVE 196
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
367-617 |
5.37e-07 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 52.05 E-value: 5.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 367 LGLNVLAGFSGQVSLGQSAFLAIGAYTAAVAVDR-GLPPLVGVALALVVGGGAGLLLGLPATRL---SGIYLTLLTLIFA 442
Cdd:cd06582 13 LGLTLIFGVTGVINFAHGEFYMLGAYVAYTLLVAlGLPFWLALLLALLVAALLGVLLERLVLRPlrgAPLLTLLITFGGL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 443 FALPELIVYLKDVTNGASGLPLTPPEFLF----VPANMYWFMLAAACAVGAGVMVLAGTRTGRAWRAVRDSEDGARSLGL 518
Cdd:cd06582 93 LILLQGLLLIFGGDPRVPPPPLLSGSVELggvtIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 519 KPAGVKLGAFTLGSALAAlGGALGGLLVGFVGPDSyGVFVSIYALLAVVLGGSGSVFGSLLGALFITVVPDVTG---GSG 595
Cdd:cd06582 173 NVRRVFALTFALGAALAG-LAGVLLAPITGVSPTM-GLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLAAaylSSG 250
|
250 260
....*....|....*....|..
gi 2045876399 596 IPQNLLFGIaLLLVLFLAPRGL 617
Cdd:cd06582 251 YKDAVAFVL-LILVLLVRPQGL 271
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
681-895 |
6.02e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 53.80 E-value: 6.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 681 GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEplsgwprhqaaasarrgIGHIPEGRGIF 760
Cdd:TIGR00957 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-----------------VAYVPQQAWIQ 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 PDlTVKENLDLGSFAAPSRSVSPEDLERVLGYFPIL--GDR--LGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLG 836
Cdd:TIGR00957 712 ND-SLRENILFGKALNEKYYQQVLEACALLPDLEILpsGDRteIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 837 LAPLISQQVFNmmRTIADSGV----SILLVEQNArASLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:TIGR00957 791 VDAHVGKHIFE--HVIGPEGVlknkTRILVTHGI-SYLPQVDVIIVMSGGKISEMGSYQELLQ 850
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
692-833 |
7.46e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 53.03 E-value: 7.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 692 TVGKGEIVALLGANGAGKSTVLRTISGVIPADSGdlswegeplsgwprhqaaaSARRG----IGHIPEGRGIF-PDLTVK 766
Cdd:PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG-------------------RIHCGtkleVAYFDQHRAELdPEKTVM 401
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 767 ENLdlgsfAAPSRSVSPEDLER-VLGYfpiLGDRL--GQLAGT----LSGGEQQMLAIARALLSRPRLLMLDEP 833
Cdd:PRK11147 402 DNL-----AEGKQEVMVNGRPRhVLGY---LQDFLfhPKRAMTpvkaLSGGERNRLLLARLFLKPSNLLILDEP 467
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
685-870 |
7.93e-07 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 52.83 E-value: 7.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 685 VLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWegeplsgwPRHQAaasarrgIGHIPE----GRG-- 758
Cdd:TIGR00954 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTK--------PAKGK-------LFYVPQrpymTLGtl 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 759 ----IFPDltvkenldlGSFAAPSRSVSPEDLERVLGYFPiLGDRLGQLAG---------TLSGGEQQMLAIARALLSRP 825
Cdd:TIGR00954 532 rdqiIYPD---------SSEDMKRRGLSDKDLEQILDNVQ-LTHILEREGGwsavqdwmdVLSGGEKQRIAMARLFYHKP 601
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2045876399 826 RLLMLDEPSLGLAPLISQQVFNMMRtiaDSGVSILLVEQnaRASL 870
Cdd:TIGR00954 602 QFAILDECTSAVSVDVEGYMYRLCR---EFGITLFSVSH--RKSL 641
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
762-904 |
1.29e-06 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 52.38 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKENLDLgsFAA-PSRSVSPEDLERV-LGYFpilgdRLGQLAGTLSGGEQQMLAIARALLSRPR---LLMLDEPSLG 836
Cdd:PRK00349 791 DMTVEEALEF--FEAiPKIARKLQTLVDVgLGYI-----KLGQPATTLSGGEAQRVKLAKELSKRSTgktLYILDEPTTG 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 837 L-----APLIsqQVFNmmrTIADSGVSILLVEQNaraslaL-----ADraYVL-------SR-GRVVLSGPADEVAANP- 897
Cdd:PRK00349 864 LhfediRKLL--EVLH---RLVDKGNTVVVIEHN------LdviktAD--WIIdlgpeggDGgGEIVATGTPEEVAKVEa 930
|
....*..
gi 2045876399 898 SLTGSYL 904
Cdd:PRK00349 931 SYTGRYL 937
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
808-898 |
1.33e-06 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 51.26 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 808 SGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIADS-GVSILLVEQNARASLALADRAYVLSRGRVVL 886
Cdd:PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREfNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242
|
90
....*....|..
gi 2045876399 887 SGPADEVAANPS 898
Cdd:PRK09473 243 YGNARDVFYQPS 254
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
684-832 |
1.42e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 52.43 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWprhqAAASARRGIGHIPEGRGIFPDl 763
Cdd:PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF----GLMDLRKVLGIIPQAPVLFSG- 1327
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045876399 764 TVKENLDlgSFAAPSRSVSPEDLERVLGYFPILGDRLGQLAGTLSGGE------QQMLAIARALLSRPRLLMLDE 832
Cdd:PLN03130 1328 TVRFNLD--PFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEnfsvgqRQLLSLARALLRRSKILVLDE 1400
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
93-255 |
2.83e-06 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 50.46 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 93 LATLGALLILEGLVGLRYGFAPQSLAPAFDRGV------GLDVGPISIStNQLFVAgmgLVATVVLFAIVMRTRLGLGMR 166
Cdd:PRK09478 136 IATLGTMIIVYGINSLYYDFVGASPISGFDSGFstfaqgFVALGSFRLS-YITFYA---LIAVAFVWVLWNKTRFGKNIF 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 167 AVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTPLTylspGSFT-----IFLLTAFAAVVLGGFT------SVI 235
Cdd:PRK09478 212 AIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRI----GSATnnlgfMYELDAIAACVVGGVSfsggvgTVI 287
|
170 180
....*....|....*....|
gi 2045876399 236 GVVIGALVFGVaTNLLLTYL 255
Cdd:PRK09478 288 GVVTGVIIFTV-INYGLTYI 306
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
804-904 |
3.25e-06 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 51.23 E-value: 3.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 804 AGTLSGGEQQmlaiarallsRPRL-------LM-----LDEPSLGLAP-----LIsqqvfNMMRTIADSGVSILLVEQNA 866
Cdd:PRK00349 487 AGTLSGGEAQ----------RIRLatqigsgLTgvlyvLDEPSIGLHQrdndrLI-----ETLKHLRDLGNTLIVVEHDE 551
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2045876399 867 RASLAlADraYVLS--------RGRVVLSGPADEVAANP-SLTGSYL 904
Cdd:PRK00349 552 DTIRA-AD--YIVDigpgagvhGGEVVASGTPEEIMKNPnSLTGQYL 595
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
624-897 |
3.66e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 50.93 E-value: 3.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 624 ATLAALGFRERRAARAHGLEIGPERETVADPVLETPSSSDRQGSEALlrlvgvsagYGVEP--VLRELDLTVGKGEIVAL 701
Cdd:PTZ00243 621 VVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDF---------FELEPkvLLRDVSVSVPRGKLTVV 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 702 LGANGAGKSTVLRTISGVIPADSGDLsWegeplsgwprhqaaasARRGIGHIPEGRGIFpDLTVKENLdlgSFAAPSRSV 781
Cdd:PTZ00243 692 LGATGSGKSTLLQSLLSQFEISEGRV-W----------------AERSIAYVPQQAWIM-NATVRGNI---LFFDEEDAA 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 782 SPEDLERVLGyfpiLGDRLGQLAG-----------TLSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMR 850
Cdd:PTZ00243 751 RLADAVRVSQ----LEADLAQLGGgleteigekgvNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2045876399 851 TIADSGVSILLVEQNARAsLALADRAYVLSRGRVVLSGPADEVAANP 897
Cdd:PTZ00243 827 LGALAGKTRVLATHQVHV-VPRADYVVALGDGRVEFSGSSADFMRTS 872
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
696-863 |
4.07e-06 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 49.29 E-value: 4.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 696 GEIVALLGANGAGKSTVLRTISG-VIPadsgDLSWEGEPlsgwPRHQAAASARRGighiPEGRGIFPDL-------TVK- 766
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGkLKP----NLGKFDDP----PDWDEILDEFRG----SELQNYFTKLlegdvkvIVKp 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 767 ENLDLGSFAAPSRSVspEDLERV--LGYFPILGDRLG------QLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSlglA 838
Cdd:cd03236 94 QYVDLIPKAVKGKVG--ELLKKKdeRGKLDELVDQLElrhvldRNIDQLSGGELQRVAIAAALARDADFYFFDEPS---S 168
|
170 180
....*....|....*....|....*...
gi 2045876399 839 PLISQQVFNMMRTI---ADSGVSILLVE 863
Cdd:cd03236 169 YLDIKQRLNAARLIrelAEDDNYVLVVE 196
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
689-735 |
6.71e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 49.80 E-value: 6.71e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2045876399 689 LDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLS 735
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVT 397
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
680-863 |
7.24e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 49.81 E-value: 7.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 680 YGVePVLREldltvgkGEIVALLGANGAGKSTVLRTISG-VIP---ADSGDLSWE-------GEPLSGWPRHQAAASARr 748
Cdd:PRK13409 91 YGL-PIPKE-------GKVTGILGPNGIGKTTAVKILSGeLIPnlgDYEEEPSWDevlkrfrGTELQNYFKKLYNGEIK- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 749 gIGHIPEGRGIFPDL---TVKENLDlgsfAAPSRSVSPEDLERvLGYFPILGDRLGQlagtLSGGEQQMLAIARALLSRP 825
Cdd:PRK13409 162 -VVHKPQYVDLIPKVfkgKVRELLK----KVDERGKLDEVVER-LGLENILDRDISE----LSGGELQRVAIAAALLRDA 231
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2045876399 826 RLLMLDEPSLGLAplISQQVfNMMRTIAD--SGVSILLVE 863
Cdd:PRK13409 232 DFYFFDEPTSYLD--IRQRL-NVARLIRElaEGKYVLVVE 268
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
690-895 |
8.39e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 49.24 E-value: 8.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 690 DLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGD----------LSWEgeplsgwpRHQAAASA---RRGIGHIPEG 756
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGErqsqfshitrLSFE--------QLQKLVSDewqRNNTDMLSPG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 757 RGIFpDLTVKENLDLGSfAAPSRSvspEDLERVLGYFPILGDRLGQLagtlSGGEQQMLAIARALLSRPRLLMLDEPSLG 836
Cdd:PRK10938 95 EDDT-GRTTAEIIQDEV-KDPARC---EQLAQQFGITALLDRRFKYL----STGETRKTLLCQALMSEPDLLILDEPFDG 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2045876399 837 LAPLISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAA 895
Cdd:PRK10938 166 LDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
686-867 |
9.35e-06 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 48.27 E-value: 9.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEplsgwprhqaaasarrgIGHIPEGRGIFPDLTV 765
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------------VSVIAISAGLSGQLTG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 766 KENLD-----LGSFAAPSRSVSPEDLErvlgyFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEP-SLGlAP 839
Cdd:PRK13546 103 IENIEfkmlcMGFKRKEIKAMTPKIIE-----FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAlSVG-DQ 176
|
170 180
....*....|....*....|....*...
gi 2045876399 840 LISQQVFNMMRTIADSGVSILLVEQNAR 867
Cdd:PRK13546 177 TFAQKCLDKIYEFKEQNKTIFFVSHNLG 204
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
145-246 |
1.10e-05 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 48.58 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 145 GLVATVVLFAIVMRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVT--PLTYLSPGSFTIFLLTA 222
Cdd:COG4603 203 ALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVlgVQGRLTPGFSPGYGFTG 282
|
90 100
....*....|....*....|....
gi 2045876399 223 FAAVVLGGFtSVIGVVIGALVFGV 246
Cdd:COG4603 283 IAVALLGRN-NPLGIILAALLFGA 305
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
680-879 |
1.16e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 46.80 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 680 YGVEPVLRELDlTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGeplsgwprhqaaasarrgighipegrgi 759
Cdd:cd03222 10 YGVFFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG---------------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 760 fpdLTVkenldlgsfaapsrSVSPEDLErvlgyfpilgdrlgqlagtLSGGEQQMLAIARALLSRPRLLMLDEPSlglAP 839
Cdd:cd03222 61 ---ITP--------------VYKPQYID-------------------LSGGELQRVAIAAALLRNATFYLFDEPS---AY 101
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2045876399 840 LISQQVFNMMRTI----ADSGVSILLVEQNARASLALADRAYVL 879
Cdd:cd03222 102 LDIEQRLNAARAIrrlsEEGKKTALVVEHDLAVLDYLSDRIHVF 145
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
686-896 |
1.38e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 48.73 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 686 LRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGeplsgwprhqaAASArrgighIPEGRGIFPDLTV 765
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG-----------SAAL------IAISSGLNGQLTG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 766 KENLDL-----GSFAAPSRSVSPEDLErvlgyFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEP-SLGlAP 839
Cdd:PRK13545 103 IENIELkglmmGLTKEKIKEIIPEIIE-----FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAlSVG-DQ 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 840 LISQQVFNMMRTIADSGVSILLVEQNARASLALADRAYVLSRGRVVLSGPADEVAAN 896
Cdd:PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
762-905 |
1.58e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 48.87 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 762 DLTVKENLDLGSfaapsRSVSPEDLERVLGYFPI----------LGDRLGQLAGTLSGGEQQMLAIARALLSRPRLLMLD 831
Cdd:PTZ00265 1309 NMSIYENIKFGK-----EDATREDVKRACKFAAIdefieslpnkYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045876399 832 EPSlglAPLISQQVFNMMRTIADsgvsilLVEQNARASLALADRAYVLSRGRVVLsgpadeVAANPSLTGSYLE 905
Cdd:PTZ00265 1384 EAT---SSLDSNSEKLIEKTIVD------IKDKADKTIITIAHRIASIKRSDKIV------VFNNPDRTGSFVQ 1442
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
150-274 |
3.31e-05 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 47.02 E-value: 3.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 150 VVLFA----IVMRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTP-LTYLSPGSFTIFLLTAFA 224
Cdd:PRK09512 179 AIVFLaawyMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVArLSSAQPTAGTGYELDAIA 258
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 225 AVVLGGfTS-------VIGVVIGALVFGVATNlLLTYLDSSliSTYTFLGVALVLVL 274
Cdd:PRK09512 259 AVVLGG-TSlaggkgrIVGTLIGALILGFLNN-GLNLLGVS--SYYQMIVKAVVILL 311
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
790-882 |
3.86e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 47.90 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 790 LGYFPilgdrLGQLAGTLSGGEQQMLAIARALLS---RPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNA 866
Cdd:PRK00635 798 LDYLP-----LGRPLSSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872
|
90
....*....|....*.
gi 2045876399 867 RAsLALADraYVLSRG 882
Cdd:PRK00635 873 HV-VKVAD--YVLELG 885
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
681-898 |
4.38e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 47.47 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 681 GVEPVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSGWPRHQaaasARRGIGHIPEGRGIF 760
Cdd:PTZ00243 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRE----LRRQFSMIPQDPVLF 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 pDLTVKENLDLGSFAAPSRSVSPEDL----ERVLGYFPILGDRLGQLAGTLSGGEQQMLAIARALLSRPR-LLMLDEPSL 835
Cdd:PTZ00243 1397 -DGTVRQNVDPFLEASSAEVWAALELvglrERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSgFILMDEATA 1475
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 836 GLAPLISQQVFNMMRTiADSGVSILLVEQNARaSLALADRAYVLSRGRVVLSGPADEVAANPS 898
Cdd:PTZ00243 1476 NIDPALDRQIQATVMS-AFSAYTVITIAHRLH-TVAQYDKIIVMDHGAVAEMGSPRELVMNRQ 1536
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
807-897 |
4.90e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 46.27 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 807 LSGGEQQMLAIARALLSRPRLLMLDEPSLGLAPLISQQVFNMMRTIAD-SGVSILLVEQNarasLAL----ADRAYVLSR 881
Cdd:PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQkENMALVLITHD----LALvaeaAHKIIVMYA 229
|
90
....*....|....*.
gi 2045876399 882 GRVVLSGPADEVAANP 897
Cdd:PRK11022 230 GQVVETGKAHDIFRAP 245
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
362-612 |
8.98e-05 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 45.35 E-value: 8.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 362 MFVGVLGLNVLAGFSGQVSLGQSAFLAIGAYTAAVAVDRGLPPLVGVALALVVGGGAGLLLGLPATRLSGIYLtLLTLIF 441
Cdd:cd06574 4 YAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGL-LAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 442 AFALPELIVYLKDVTNGASGLPLTPPEFLFVPANMYWFMLAAACAVGAGVMVLA-----GTRTGRAWRAVRDSEDGARSL 516
Cdd:cd06574 83 MIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLviwflRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 517 GLKPAGVKLGAFTLGSALAALGGALGGLLVGFVGPDSyGVFVSIYALLAVVLGGSG--------SVFGSLLGALFITVVP 588
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNM-GIGTGVIGLAAVIIGGAIvgrrtikaSILGVIIGAILYRIAL 241
|
250 260
....*....|....*....|....*
gi 2045876399 589 DVTGGSGIPQNLLFGI-ALLLVLFL 612
Cdd:cd06574 242 ALALGSGLIPSDLKLItAGVIVLVL 266
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
684-888 |
1.56e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 44.40 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 684 PVLRELDLTVGKGEIVALLGANGAGKSTVLRTISGV--IPADSGDLSWEGEPLSGW-PRHQAaasarrgighipeGRGIF 760
Cdd:PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELsPEDRA-------------GEGIF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 761 ---------PDLTVKENLDLGSFAAPS-RSVSPED-------LERVLGYFPILGDRLGQLAGT-LSGGEQQMLAIARALL 822
Cdd:PRK09580 82 mafqypveiPGVSNQFFLQTALNAVRSyRGQEPLDrfdfqdlMEEKIALLKMPEDLLTRSVNVgFSGGEKKRNDILQMAV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2045876399 823 SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEQNARA-SLALADRAYVLSRGRVVLSG 888
Cdd:PRK09580 162 LEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIlDYIKPDYVHVLYQGRIVKSG 228
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
790-904 |
2.96e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.82 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 790 LGYFPilgdrLGQLAGTLSGGEQQMLAIARALL---SRPRLLMLDEPSLGLAPLISQQVFNMMRTIADSGVSILLVEqNA 866
Cdd:PRK00635 1688 LGYLP-----LGQNLSSLSLSEKIAIKIAKFLYlppKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID-HD 1761
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2045876399 867 RASLALADRAYVLSR------GRVVLSG-PADEVAANPSLTGSYL 904
Cdd:PRK00635 1762 PALLKQADYLIEMGPgsgktgGKILFSGpPKDISASKDSLLKTYM 1806
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
671-736 |
3.01e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 44.58 E-value: 3.01e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 671 LRLVGVSAGYG-----VEPVlrelDLTVGKGEIVALLGANGAGKSTVLRTISGVIPADSGDLSWEGEPLSG 736
Cdd:PRK10522 323 LELRNVTFAYQdngfsVGPI----NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
494-615 |
9.41e-04 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 42.41 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 494 LAGTRTGRAWRAVRDSEDGARSLGLKPAGVKLGAFTLGSALAALGGALGGLLVGFVgPDSYGVFVSIYALLAVV------ 567
Cdd:PRK15432 177 LAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFI-PNQTGTGLEMKAIAACVlggisl 255
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2045876399 568 LGGSGSVFGSLLGALFITVVPDVTGGSGIP---QNLLFGIALLLVLFLAPR 615
Cdd:PRK15432 256 LGGSGTIIGAVLGAYFLTQIDSVLVLLRIPawwNDFIAGLVLLGVLVFDGR 306
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
469-612 |
1.05e-03 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 42.01 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 469 FLFVPANMYWFMLAAACAVgagvMVLAGTRTGRAWRAVRDSEDGARSLGLKPAGVKLGAFTLGSALAALGGALGGLLVGF 548
Cdd:cd06579 115 ILGIPVPVLIALAVALVAW----FLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGS 190
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 549 VGPDsYGVFVSIYALLAVVLG------GSGSVFGSLLGALFITVVPDVTGGSGIP---QNLLFGIALLLVLFL 612
Cdd:cd06579 191 AQPT-AGNGYELDAIAAVVLGgtsltgGRGSVLGTLLGALLLGVLNNGLNLLGVSsfwQQIVKGAILLLAVAL 262
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
146-251 |
1.27e-03 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 42.07 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 146 LVATVVLFAIVMRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLAALLVTP-LTYLSPGSFTIFLLTAFA 224
Cdd:PRK09699 170 LIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTArLGAAEPLAGMGFETYAIA 249
|
90 100 110
....*....|....*....|....*....|...
gi 2045876399 225 AVVLGGFT------SVIGVVIGALVFGVATNLL 251
Cdd:PRK09699 250 SAIIGGTSffggkgRIFSVVIGGLIIGTINNGL 282
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
493-612 |
1.77e-03 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 41.63 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 493 VLAGTRTGRAWRAVRDSEDGARSLGLKPAGVKLGAFTLGSALAALGGALGGLLVGFVGPDSyGVFVSIYALLAVVLG--- 569
Cdd:COG1172 185 LLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNA-GSGYELDAIAAVVIGgts 263
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2045876399 570 ---GSGSVFGSLLGALFITVVPDVTGGSGIP---QNLLFGIALLLVLFL 612
Cdd:COG1172 264 ltgGRGSVLGTLLGALILGVLNNGLNLLGVSsywQQIVKGAIILLAVLL 312
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
800-837 |
2.26e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 41.94 E-value: 2.26e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2045876399 800 LGQLAGTLSGGEQQMLAIARALLSRPRLLMLDEPSLGL 837
Cdd:PTZ00265 573 VGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610
|
|
| livM |
PRK11301 |
leucine/isoleucine/valine transporter permease subunit; Provisional |
146-279 |
7.84e-03 |
|
leucine/isoleucine/valine transporter permease subunit; Provisional
Pssm-ID: 236896 [Multi-domain] Cd Length: 419 Bit Score: 39.57 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045876399 146 LVATVVLFAI--VMRTRLGLGMRAVSSGPLTAQLLGVDVGRVRMSAWILGGVYGGLA-ALLVTPLTYLSPGSFTiFLLTA 222
Cdd:PRK11301 270 LLVVLTLFVInrLLRMPLGRAWEALREDEIACRSLGLNPTRIKLSAFTIGAAFAGFAgTFFAARQGFVSPESFT-FIESA 348
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045876399 223 F--AAVVLGGFTSVIGVVIGALVFGVATNLLLTYldssliSTYTFLGVALVLVL----RPHGI 279
Cdd:PRK11301 349 FilAIVVLGGMGSQFGVILAAILLVVLPELMRDF------NEYRMLMFGLLMVLmmiwRPQGL 405
|
|
| |
