plasmid partitioning protein RepB C-terminal domain-containing protein [Bradyrhizobium iriomotense]
Protein Classification
ParB/RepB/Spo0J family partition protein( domain architecture ID 11445188)
ParB/RepB/Spo0J family partition protein which may be involved in segregation and competition between plasmids and chromosomes such as the ParB/SpoJ-type DNA-binding component of the prokaryotic parABS partitioning system
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| RepB | pfam07506 | RepB plasmid partitioning protein; This family includes proteins with sequence similarity to ... |
109-291 | 5.93e-68 | ||||
RepB plasmid partitioning protein; This family includes proteins with sequence similarity to the RepB partitioning protein of the large Ti (tumour-inducing) plasmids of Agrobacterium tumefaciens. : Pssm-ID: 311449 Cd Length: 185 Bit Score: 209.64 E-value: 5.93e-68
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| Spo0J | COG1475 | Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, ... |
18-196 | 7.15e-15 | ||||
Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, cell division, chromosome partitioning]; : Pssm-ID: 441084 [Multi-domain] Cd Length: 241 Bit Score: 72.33 E-value: 7.15e-15
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| Name | Accession | Description | Interval | E-value | ||||
| RepB | pfam07506 | RepB plasmid partitioning protein; This family includes proteins with sequence similarity to ... |
109-291 | 5.93e-68 | ||||
RepB plasmid partitioning protein; This family includes proteins with sequence similarity to the RepB partitioning protein of the large Ti (tumour-inducing) plasmids of Agrobacterium tumefaciens. Pssm-ID: 311449 Cd Length: 185 Bit Score: 209.64 E-value: 5.93e-68
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| Spo0J | COG1475 | Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, ... |
18-196 | 7.15e-15 | ||||
Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 441084 [Multi-domain] Cd Length: 241 Bit Score: 72.33 E-value: 7.15e-15
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| ParB_N_like_MT | cd16401 | ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent ... |
41-95 | 1.03e-08 | ||||
ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase domain; This family represents domains related to the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system, fused to a variety of C-terminal domains, including S-adenosylmethionine-dependent methyltransferase-like domains. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci. Pssm-ID: 319258 [Multi-domain] Cd Length: 85 Bit Score: 51.45 E-value: 1.03e-08
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| PRK13832 | PRK13832 | plasmid partitioning protein; Provisional |
47-153 | 2.34e-05 | ||||
plasmid partitioning protein; Provisional Pssm-ID: 184353 [Multi-domain] Cd Length: 520 Bit Score: 45.47 E-value: 2.34e-05
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| Name | Accession | Description | Interval | E-value | ||||
| RepB | pfam07506 | RepB plasmid partitioning protein; This family includes proteins with sequence similarity to ... |
109-291 | 5.93e-68 | ||||
RepB plasmid partitioning protein; This family includes proteins with sequence similarity to the RepB partitioning protein of the large Ti (tumour-inducing) plasmids of Agrobacterium tumefaciens. Pssm-ID: 311449 Cd Length: 185 Bit Score: 209.64 E-value: 5.93e-68
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| Spo0J | COG1475 | Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, ... |
18-196 | 7.15e-15 | ||||
Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 441084 [Multi-domain] Cd Length: 241 Bit Score: 72.33 E-value: 7.15e-15
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| ParB_N_like_MT | cd16401 | ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent ... |
41-95 | 1.03e-08 | ||||
ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase domain; This family represents domains related to the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system, fused to a variety of C-terminal domains, including S-adenosylmethionine-dependent methyltransferase-like domains. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci. Pssm-ID: 319258 [Multi-domain] Cd Length: 85 Bit Score: 51.45 E-value: 1.03e-08
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| PRK13832 | PRK13832 | plasmid partitioning protein; Provisional |
47-153 | 2.34e-05 | ||||
plasmid partitioning protein; Provisional Pssm-ID: 184353 [Multi-domain] Cd Length: 520 Bit Score: 45.47 E-value: 2.34e-05
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| ParB_N_like | cd16411 | ParB N-terminal, parA -binding, domain of bacterial and plasmid parABS partitioning systems; ... |
24-104 | 6.84e-04 | ||||
ParB N-terminal, parA -binding, domain of bacterial and plasmid parABS partitioning systems; This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci. Pssm-ID: 319268 [Multi-domain] Cd Length: 90 Bit Score: 37.96 E-value: 6.84e-04
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| ParB_N_like_MT | cd16844 | ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent ... |
51-99 | 1.05e-03 | ||||
ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase domain; This family represents domains related to the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system, fused to a variety of C-terminal domains, including S-adenosylmethionine-dependent methyltransferase-like domains and DUF4417. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci. Pssm-ID: 319272 [Multi-domain] Cd Length: 54 Bit Score: 36.48 E-value: 1.05e-03
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| Blast search parameters | ||||
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