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Conserved domains on  [gi|2006174643|ref|WP_207254712|]
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PepSY-associated TM helix domain-containing protein, partial [Pseudomonas sp. FW305-90]

Protein Classification

PepSY-associated TM helix domain-containing protein( domain architecture ID 10728075)

PepSY-associated TM helix domain-containing protein, may contain nested PepSY domain

Gene Ontology:  GO:0016020
PubMed:  15124630

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PiuB super family cl43805
PepSY-associated TM region [Function unknown];
4-87 1.24e-16

PepSY-associated TM region [Function unknown];


The actual alignment was detected with superfamily member COG3182:

Pssm-ID: 442415 [Multi-domain]  Cd Length: 379  Bit Score: 77.70  E-value: 1.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006174643   4 SDSVVHASGSTLSFNGTTGELL--RGSAEPSVATAIGGSFYGLHMGHFAGPVLRWLYFICGLAGTAMIGTGLVIWLGKRQ 81
Cdd:COG3182   282 PGELTPRGRDTVYFDPYTGEVLavRDFADYSAGAKLLEWLYPLHTGRFGGLPGRILYFLLGLALALLIVTGLLLWWKRRR 361


                  ....*.
gi 2006174643  82 LKHAKA 87
Cdd:COG3182   362 KKRAPP 367
 
Name Accession Description Interval E-value
PiuB COG3182
PepSY-associated TM region [Function unknown];
4-87 1.24e-16

PepSY-associated TM region [Function unknown];


Pssm-ID: 442415 [Multi-domain]  Cd Length: 379  Bit Score: 77.70  E-value: 1.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006174643   4 SDSVVHASGSTLSFNGTTGELL--RGSAEPSVATAIGGSFYGLHMGHFAGPVLRWLYFICGLAGTAMIGTGLVIWLGKRQ 81
Cdd:COG3182   282 PGELTPRGRDTVYFDPYTGEVLavRDFADYSAGAKLLEWLYPLHTGRFGGLPGRILYFLLGLALALLIVTGLLLWWKRRR 361


                  ....*.
gi 2006174643  82 LKHAKA 87
Cdd:COG3182   362 KKRAPP 367
PepSY_TM pfam03929
PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up ...
 1-79 2.31e-11

PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.


Pssm-ID: 427595 [Multi-domain]  Cd Length: 355  Bit Score: 62.58  E-value: 2.31e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2006174643   1 RAGSDSVVHASGSTLSFNGTTGELLRGSAEPSVATAIGGSFYGLHMGHFAGPVLRWLYFICGLAGTAMIGTGLVIWLGK 79
Cdd:pfam03929 277 RADPDGRDTVAVDQYSGAVLDGVLFADYPPGDAGAKLLAWGYPLHFGRFFGLPNRILYFLLGLALALLIVTGLLLWWKR 355
 
Name Accession Description Interval E-value
PiuB COG3182
PepSY-associated TM region [Function unknown];
4-87 1.24e-16

PepSY-associated TM region [Function unknown];


Pssm-ID: 442415 [Multi-domain]  Cd Length: 379  Bit Score: 77.70  E-value: 1.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006174643   4 SDSVVHASGSTLSFNGTTGELL--RGSAEPSVATAIGGSFYGLHMGHFAGPVLRWLYFICGLAGTAMIGTGLVIWLGKRQ 81
Cdd:COG3182   282 PGELTPRGRDTVYFDPYTGEVLavRDFADYSAGAKLLEWLYPLHTGRFGGLPGRILYFLLGLALALLIVTGLLLWWKRRR 361


                  ....*.
gi 2006174643  82 LKHAKA 87
Cdd:COG3182   362 KKRAPP 367
PepSY_TM pfam03929
PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up ...
 1-79 2.31e-11

PepSY-associated TM region; The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.


Pssm-ID: 427595 [Multi-domain]  Cd Length: 355  Bit Score: 62.58  E-value: 2.31e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2006174643   1 RAGSDSVVHASGSTLSFNGTTGELLRGSAEPSVATAIGGSFYGLHMGHFAGPVLRWLYFICGLAGTAMIGTGLVIWLGK 79
Cdd:pfam03929 277 RADPDGRDTVAVDQYSGAVLDGVLFADYPPGDAGAKLLAWGYPLHFGRFFGLPNRILYFLLGLALALLIVTGLLLWWKR 355
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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