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Conserved domains on  [gi|2006174631|ref|WP_207254702|]
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AlgP family protein [Pseudomonas sp. FW305-90]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AlgP_Nterm NF038178
AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a ...
 2-133 4.79e-56

AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a protein that has extensive lysine-rich repeats in the C-terminal half, typically PAAK, and is called histone-like for that reason. Some reports have called AlgP (also called AlgR3) a regulator of alginate biosynthesis, responsible for a mucoid phenotype in Pseudomonas aeruginosa, but recent work casts doubt on the specificity of the connection to alginate.


:

Pssm-ID: 439492  Cd Length: 132  Bit Score: 179.12  E-value: 4.79e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006174631   2 SAKQKPVNTPLHLLQQLSGSLLEHLESACSQALADAEKLLAKLEKQRGKAQEKLHKSRTKLQDAATAGKSKAQAKAKGAV 81
Cdd:NF038178    1 SAKKKPVTTPLHLLQQLSGSLLEHLEKACSQALADAEKLLAKLEKQRGKAQEKLHKARTKLQDAASAGKAKAQAKARAAI 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2006174631  82 KELEELLDALKDRQAETRSYISQLKKDAQESLKLAQGVGRVKEAVAKALGAR 133
Cdd:NF038178   81 GELEELLDLLKARQSETRTYIAQLKRDAQESLKLAQGVGKVREAAAKALASR 132
 
Name Accession Description Interval E-value
AlgP_Nterm NF038178
AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a ...
 2-133 4.79e-56

AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a protein that has extensive lysine-rich repeats in the C-terminal half, typically PAAK, and is called histone-like for that reason. Some reports have called AlgP (also called AlgR3) a regulator of alginate biosynthesis, responsible for a mucoid phenotype in Pseudomonas aeruginosa, but recent work casts doubt on the specificity of the connection to alginate.


Pssm-ID: 439492  Cd Length: 132  Bit Score: 179.12  E-value: 4.79e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006174631   2 SAKQKPVNTPLHLLQQLSGSLLEHLESACSQALADAEKLLAKLEKQRGKAQEKLHKSRTKLQDAATAGKSKAQAKAKGAV 81
Cdd:NF038178    1 SAKKKPVTTPLHLLQQLSGSLLEHLEKACSQALADAEKLLAKLEKQRGKAQEKLHKARTKLQDAASAGKAKAQAKARAAI 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2006174631  82 KELEELLDALKDRQAETRSYISQLKKDAQESLKLAQGVGRVKEAVAKALGAR 133
Cdd:NF038178   81 GELEELLDLLKARQSETRTYIAQLKRDAQESLKLAQGVGKVREAAAKALASR 132
valS PRK05729
valyl-tRNA synthetase; Reviewed
 36-97 4.39e-03

valyl-tRNA synthetase; Reviewed


Pssm-ID: 235582 [Multi-domain]  Cd Length: 874  Bit Score: 38.93  E-value: 4.39e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2006174631  36 DAEKLLAKLEKQRGKAQEKLHKSRTKLQDAATAGKSKAQ--AKAKGAVKELEELLDALKDRQAE 97
Cdd:PRK05729  808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEvvEKEREKLAEYEEKLAKLKERLAR 871
 
Name Accession Description Interval E-value
AlgP_Nterm NF038178
AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a ...
 2-133 4.79e-56

AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a protein that has extensive lysine-rich repeats in the C-terminal half, typically PAAK, and is called histone-like for that reason. Some reports have called AlgP (also called AlgR3) a regulator of alginate biosynthesis, responsible for a mucoid phenotype in Pseudomonas aeruginosa, but recent work casts doubt on the specificity of the connection to alginate.


Pssm-ID: 439492  Cd Length: 132  Bit Score: 179.12  E-value: 4.79e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2006174631   2 SAKQKPVNTPLHLLQQLSGSLLEHLESACSQALADAEKLLAKLEKQRGKAQEKLHKSRTKLQDAATAGKSKAQAKAKGAV 81
Cdd:NF038178    1 SAKKKPVTTPLHLLQQLSGSLLEHLEKACSQALADAEKLLAKLEKQRGKAQEKLHKARTKLQDAASAGKAKAQAKARAAI 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2006174631  82 KELEELLDALKDRQAETRSYISQLKKDAQESLKLAQGVGRVKEAVAKALGAR 133
Cdd:NF038178   81 GELEELLDLLKARQSETRTYIAQLKRDAQESLKLAQGVGKVREAAAKALASR 132
valS PRK05729
valyl-tRNA synthetase; Reviewed
 36-97 4.39e-03

valyl-tRNA synthetase; Reviewed


Pssm-ID: 235582 [Multi-domain]  Cd Length: 874  Bit Score: 38.93  E-value: 4.39e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2006174631  36 DAEKLLAKLEKQRGKAQEKLHKSRTKLQDAATAGKSKAQ--AKAKGAVKELEELLDALKDRQAE 97
Cdd:PRK05729  808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEvvEKEREKLAEYEEKLAKLKERLAR 871
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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