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Conserved domains on  [gi|1998746482|ref|WP_206640776|]
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YecA family protein [Rhizobium leguminosarum]

Protein Classification

YecA family protein( domain architecture ID 11462391)

YecA family protein similar to Escherichia coli uncharacterized protein YecA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 2-22 5.76e-10

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


:

Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 54.91  E-value: 5.76e-10
                          10        20
                  ....*....|....*....|.
gi 1998746482   2 KTGRNELCPCGSGKKFKKCCL 22
Cdd:COG3318    23 KVGRNDPCPCGSGKKYKKCCG 43
 
Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 2-22 5.76e-10

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 54.91  E-value: 5.76e-10
                          10        20
                  ....*....|....*....|.
gi 1998746482   2 KTGRNELCPCGSGKKFKKCCL 22
Cdd:COG3318    23 KVGRNDPCPCGSGKKYKKCCG 43
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 5-23 1.73e-09

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 52.87  E-value: 1.73e-09
                          10
                  ....*....|....*....
gi 1998746482   5 RNELCPCGSGKKFKKCCLN 23
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCGP 19
PRK01617 PRK01617
hypothetical protein; Provisional
 1-21 2.98e-09

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 55.81  E-value: 2.98e-09
                          10        20
                  ....*....|....*....|.
gi 1998746482   1 MKTGRNELCPCGSGKKFKKCC 21
Cdd:PRK01617  132 PQFGRNDPCPCGSGKKFKKCC 152
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 2-21 6.40e-08

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 50.77  E-value: 6.40e-08
                          10        20
                  ....*....|....*....|.
gi 1998746482   2 KT-GRNELCPCGSGKKFKKCC 21
Cdd:TIGR04102  87 KTpNRNDPCPCGSGKKYKKCC 107
 
Name Accession Description Interval E-value
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 2-22 5.76e-10

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 54.91  E-value: 5.76e-10
                          10        20
                  ....*....|....*....|.
gi 1998746482   2 KTGRNELCPCGSGKKFKKCCL 22
Cdd:COG3318    23 KVGRNDPCPCGSGKKYKKCCG 43
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 5-23 1.73e-09

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 52.87  E-value: 1.73e-09
                          10
                  ....*....|....*....
gi 1998746482   5 RNELCPCGSGKKFKKCCLN 23
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCGP 19
PRK01617 PRK01617
hypothetical protein; Provisional
 1-21 2.98e-09

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 55.81  E-value: 2.98e-09
                          10        20
                  ....*....|....*....|.
gi 1998746482   1 MKTGRNELCPCGSGKKFKKCC 21
Cdd:PRK01617  132 PQFGRNDPCPCGSGKKFKKCC 152
PRK05590 PRK05590
hypothetical protein; Provisional
 2-21 2.81e-08

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 53.44  E-value: 2.81e-08
                          10        20
                  ....*....|....*....|
gi 1998746482   2 KTGRNELCPCGSGKKFKKCC 21
Cdd:PRK05590  144 KVGRNDPCPCGSGKKYKKCC 163
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 2-21 6.40e-08

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 50.77  E-value: 6.40e-08
                          10        20
                  ....*....|....*....|.
gi 1998746482   2 KT-GRNELCPCGSGKKFKKCC 21
Cdd:TIGR04102  87 KTpNRNDPCPCGSGKKYKKCC 107
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 2-21 7.42e-08

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 55.42  E-value: 7.42e-08
                          10        20
                  ....*....|....*....|
gi 1998746482   2 KTGRNELCPCGSGKKFKKCC 21
Cdd:COG0653   853 KVGRNDPCPCGSGKKYKHCH 872
PRK00183 PRK00183
hypothetical protein; Provisional
 1-21 2.11e-06

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 47.87  E-value: 2.11e-06
                          10        20
                  ....*....|....*....|.
gi 1998746482   1 MKTGRNELCPCGSGKKFKKCC 21
Cdd:PRK00183  132 LKAGRNDPCPCGSGQKFKKCC 152
PRK10396 PRK10396
hypothetical protein; Provisional
 2-22 2.75e-06

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 48.59  E-value: 2.75e-06
                          10        20
                  ....*....|....*....|.
gi 1998746482   2 KTGRNELCPCGSGKKFKKCCL 22
Cdd:PRK10396  200 KVGRNDPCPCGSGKKFKQCCL 220
PRK02250 PRK02250
hypothetical protein; Provisional
 1-21 4.27e-06

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 47.18  E-value: 4.27e-06
                          10        20
                  ....*....|....*....|.
gi 1998746482   1 MKTGRNELCPCGSGKKFKKCC 21
Cdd:PRK02250  145 LKQGRNDPCICGSGKKFKKCC 165
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 7-21 4.99e-04

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 43.15  E-value: 4.99e-04
                          10
                  ....*....|....*
gi 1998746482   7 ELCPCGSGKKFKKCC 21
Cdd:PRK12904  812 DPCPCGSGKKYKHCH 826
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 4-21 1.05e-03

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 39.44  E-value: 1.05e-03
                          10
                  ....*....|....*...
gi 1998746482   4 GRNELCPCGSGKKFKKCC 21
Cdd:COG3012     1 PSNSPCPCGSGKPYADCC 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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