NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1968662561|ref|WP_202616469|]
View 

MULTISPECIES: sodium ion-translocating decarboxylase subunit beta, partial [Salmonella]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
OAD_beta super family cl00816
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
 1-93 1.37e-41

Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.


The actual alignment was detected with superfamily member PRK15477:

Pssm-ID: 445116 [Multi-domain]  Cd Length: 433  Bit Score: 140.87  E-value: 1.37e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 80
Cdd:PRK15477  128 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:PRK15477  208 IYLSGKLAPELLG 220
 
Name Accession Description Interval E-value
PRK15477 PRK15477
oxaloacetate decarboxylase subunit beta; Provisional
 1-93 1.37e-41

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185374 [Multi-domain]  Cd Length: 433  Bit Score: 140.87  E-value: 1.37e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 80
Cdd:PRK15477  128 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:PRK15477  208 IYLSGKLAPELLG 220
Na_pump_decarbB TIGR01109
sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits ...
 1-93 2.11e-37

sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane. [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]


Pssm-ID: 130179  Cd Length: 354  Bit Score: 127.98  E-value: 2.11e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 80
Cdd:TIGR01109  57 KVGIGSGIAPLLIFMGIGALTDFGPLLANPRTLLLGAAAQFGIFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA 136

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:TIGR01109 137 IYLSGKLAPELLA 149
OadB COG1883
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production ...
 1-93 1.08e-30

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production and conversion];


Pssm-ID: 441487  Cd Length: 373  Bit Score: 110.60  E-value: 1.08e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNyfglisFTLPQAAAIGIIGGADGPTA 80
Cdd:COG1883    76 NFGISNGLFPPLIFMGIGAMTDFGPLLANPKSLLLGAAAQFGIFATLLGALALG------FTLKEAASIGIIGGADGPTA 149

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:COG1883   150 IFVASKLAPHLLG 162
OAD_beta pfam03977
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
 1-93 1.90e-29

Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.


Pssm-ID: 427626  Cd Length: 344  Bit Score: 107.15  E-value: 1.90e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALtlnyfgLISFTLPQAAAIGIIGGADGPTA 80
Cdd:pfam03977  48 NGGIKNGLFPLLIFMGIGAMTDFGPLLANPKSLLLGAAAQLGIFATLLGAL------ALGFTLKEAASIGIIGGADGPTA 121

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:pfam03977 122 IFVSSKLAPHLLG 134
 
Name Accession Description Interval E-value
PRK15477 PRK15477
oxaloacetate decarboxylase subunit beta; Provisional
 1-93 1.37e-41

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185374 [Multi-domain]  Cd Length: 433  Bit Score: 140.87  E-value: 1.37e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 80
Cdd:PRK15477  128 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:PRK15477  208 IYLSGKLAPELLG 220
PRK15475 PRK15475
oxaloacetate decarboxylase subunit beta; Provisional
 1-93 1.77e-41

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185372 [Multi-domain]  Cd Length: 433  Bit Score: 140.48  E-value: 1.77e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 80
Cdd:PRK15475  128 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:PRK15475  208 IYLSGKLAPELLG 220
PRK15476 PRK15476
oxaloacetate decarboxylase subunit beta; Provisional
 1-93 1.11e-40

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185373 [Multi-domain]  Cd Length: 433  Bit Score: 138.17  E-value: 1.11e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 80
Cdd:PRK15476  128 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:PRK15476  208 IYLSGKLAPELLG 220
Na_pump_decarbB TIGR01109
sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits ...
 1-93 2.11e-37

sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane. [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]


Pssm-ID: 130179  Cd Length: 354  Bit Score: 127.98  E-value: 2.11e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 80
Cdd:TIGR01109  57 KVGIGSGIAPLLIFMGIGALTDFGPLLANPRTLLLGAAAQFGIFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA 136

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:TIGR01109 137 IYLSGKLAPELLA 149
OadB COG1883
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production ...
 1-93 1.08e-30

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production and conversion];


Pssm-ID: 441487  Cd Length: 373  Bit Score: 110.60  E-value: 1.08e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNyfglisFTLPQAAAIGIIGGADGPTA 80
Cdd:COG1883    76 NFGISNGLFPPLIFMGIGAMTDFGPLLANPKSLLLGAAAQFGIFATLLGALALG------FTLKEAASIGIIGGADGPTA 149

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:COG1883   150 IFVASKLAPHLLG 162
OAD_beta pfam03977
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
 1-93 1.90e-29

Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.


Pssm-ID: 427626  Cd Length: 344  Bit Score: 107.15  E-value: 1.90e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1968662561   1 KVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALtlnyfgLISFTLPQAAAIGIIGGADGPTA 80
Cdd:pfam03977  48 NGGIKNGLFPLLIFMGIGAMTDFGPLLANPKSLLLGAAAQLGIFATLLGAL------ALGFTLKEAASIGIIGGADGPTA 121

                          90
                  ....*....|...
gi 1968662561  81 IYLSGKLAPELLG 93
Cdd:pfam03977 122 IFVSSKLAPHLLG 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH