|
Name |
Accession |
Description |
Interval |
E-value |
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
14-248 |
2.84e-102 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 297.35 E-value: 2.84e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPA 92
Cdd:COG3638 14 GGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPtSGEILVDGQDVTALRGRALRRLRRRIGMIFQQFNLVP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAGRLGQWSLGRSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:COG3638 94 RLSVLTNVLAGRLGRTSTWRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIARALVQEPKLILADEP 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 173 VSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAVTPAMLAELYAGDDEA 248
Cdd:COG3638 174 VASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAELTDAVLREIYGGEAEE 249
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
17-242 |
3.30e-82 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 245.94 E-value: 3.30e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPASQP 95
Cdd:cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPtSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 VVTAVLAGRLGQWSLGRSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:cd03256 95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 176 LDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAVTPAMLAELY 242
Cdd:cd03256 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEIY 241
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
14-243 |
2.08e-62 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 195.98 E-value: 2.08e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPA 92
Cdd:TIGR02315 13 NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCInRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAGRLGQWSLGRSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 173 VSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAVTPAMLAELYA 243
Cdd:TIGR02315 173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRHIYG 243
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
11-242 |
3.16e-49 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 162.14 E-value: 3.16e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 11 LRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRlrsRIGMVWQQPP 89
Cdd:COG1120 9 VGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKpSSGEVLLDGRDLASLSRRELAR---RIAYVPQEPP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 LPASQPVVTAVLAGR---LGQWSLGRSLlsllrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:COG1120 86 APFGLTVRELVALGRyphLGLFGRPSAE-------DREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 167 ILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV-TPAMLAELY 242
Cdd:COG1120 159 LLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVlTPELLEEVY 235
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
18-224 |
2.98e-46 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 153.41 E-value: 2.98e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRLRSR-IGMVWQQ----PPLP 91
Cdd:cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRpTSGEVRVDGTDISKLSEKELAAFRRRhIGFVFQSfnllPDLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 92 ASQPV-VTAVLAGRLGqwslgrsllsllrPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:cd03255 99 ALENVeLPLLLAGVPK-------------KERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 171 EPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELAlGRFPRIIGLREGRV 224
Cdd:cd03255 166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-245 |
5.34e-45 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 151.01 E-value: 5.34e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPwtlstrdrQRLRS 79
Cdd:COG1121 4 MPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAIlGLLPPTSGTVRLFGKPP--------RRARR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 80 RIGMVWQQPPLPASQPVvTA---VLAGRLGQWSLGRSLLSLlrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGI 156
Cdd:COG1121 76 RIGYVPQRAEVDWDFPI-TVrdvVLMGRYGRRGLFRRPSRA----DREAVDEALERVGLEDLADRPIGELSGGQQQRVLL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 157 ARVLYQQPDLILADEPVSALDPVlAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAVTPA 236
Cdd:COG1121 151 ARALAQDPDLLLLDEPFAGVDAA-TEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLVAHGPPEEVLTPE 229
|
....*....
gi 1960140318 237 MLAELYAGD 245
Cdd:COG1121 230 NLSRAYGGP 238
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
17-224 |
9.37e-45 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 149.81 E-value: 9.37e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRLRSR-IGMVWQQ----PPL 90
Cdd:COG1136 22 TALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRpTSGEVLIDGQDISSLSERELARLRRRhIGFVFQFfnllPEL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PASQPV-VTAVLAGRlgqwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLI 167
Cdd:COG1136 102 TALENVaLPLLLAGV---------------SRKERRERARelLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPKLI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 168 LADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELAlGRFPRIIGLREGRV 224
Cdd:COG1136 167 LADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELA-ARADRVIRLRDGRI 222
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
11-217 |
1.02e-37 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 131.50 E-value: 1.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 11 LRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDPwtlstrdrQRLRSRIGMVWQQPP 89
Cdd:cd03235 7 VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPtSGSIRVFGKPL--------EKERKRIGYVPQRRS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 LPASQPVvTA---VLAGRLGQWSLGRSLLSLlrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:cd03235 79 IDRDFPI-SVrdvVLMGLYGHKGLFRRLSKA----DKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 167 ILADEPVSALDPVlAQSSLDALLAQARARGSTLIANLHAVELALGRFPRII 217
Cdd:cd03235 154 LLLDEPFAGVDPK-TQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-224 |
3.19e-37 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 129.94 E-value: 3.19e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMV 84
Cdd:COG4619 3 LEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALaDLDPPTSGEIYLDGKP---LSAMPPPEWRRQVAYV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 85 WQQPPLPAsqPVVTAVLAgrlgqwslgRSLLSLLRPCDPAGARAELARLGLADK-WQQRCGELSGGQLQRVGIARVLYQQ 163
Cdd:COG4619 80 PQEPALWG--GTVRDNLP---------FPFQLRERKFDRERALELLERLGLPPDiLDKPVERLSGGERQRLALIRALLLQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 164 PDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:COG4619 149 PDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
15-244 |
6.87e-37 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 130.90 E-value: 6.87e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-----------------LIGTELRGEGRLTlweqdpwtlstRDRQRL 77
Cdd:PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRhlsglitgdksagshieLLGRTVQREGRLA-----------RDIRKS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 RSRIGMVWQQPPLPASQPVVTAVLAGRLGQWSLGRSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIA 157
Cdd:PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 158 RVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAVTPAM 237
Cdd:PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNER 244
|
....*..
gi 1960140318 238 LAELYAG 244
Cdd:PRK09984 245 FDHLYRS 251
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
14-233 |
7.50e-37 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 129.76 E-value: 7.50e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPplpA 92
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLnGLLKPTSGEVLVDGKD---ITKKNLRELRRKVGLVFQNP---D 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQ---PVVTAVLA-G--RLGqwslgrsllsllRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQP 164
Cdd:COG1122 86 DQlfaPTVEEDVAfGpeNLG------------LPREEIRERVEeaLELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEP 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 165 DLILADEPVSALDPVlAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:COG1122 154 EVLVLDEPTAGLDPR-GRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
14-233 |
1.65e-36 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 128.96 E-value: 1.65e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLwEQDPWTLSTRDRQRLRSRIGMVWQQ----P 88
Cdd:COG1126 12 GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCInLLEEPDSGTITV-DGEDLTDSKKDINKLRRKVGMVFQQfnlfP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVVTA--VLAGRlgqwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQP 164
Cdd:COG1126 91 HLTVLENVTLApiKVKKM---------------SKAEAEERAMelLERVGLADKADAYPAQLSGGQQQRVAIARALAMEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 165 DLILADEPVSALDPVLAQSSLDAL--LAQaraRGSTLIANLH----AVELAlgrfPRIIGLREGRVQFDCPAAAV 233
Cdd:COG1126 156 KVMLFDEPTSALDPELVGEVLDVMrdLAK---EGMTMVVVTHemgfAREVA----DRVVFMDGGRIVEEGPPEEF 223
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
14-241 |
1.68e-36 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 134.65 E-value: 1.68e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKT----SLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRlrsRIGMVWQQP- 88
Cdd:COG1123 17 GDVPAVDGVSLTIAPGETVALVGESGSGKStlalALMGLLPHGGRISGEVLLDGRDLLELSEALRGR---RIGMVFQDPm 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 ----PLPASQPVVTAVLAGRLgqwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQ 162
Cdd:COG1123 94 tqlnPVTVGDQIAEALENLGL--------------SRAEARARVLelLEAVGLERRLDRYPHQLSGGQRQRVAIAMALAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 163 QPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV--TPAMLAE 240
Cdd:COG1123 160 DPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEIlaAPQALAA 239
|
.
gi 1960140318 241 L 241
Cdd:COG1123 240 V 240
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
18-227 |
5.31e-36 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 127.09 E-value: 5.31e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPASQPV 96
Cdd:COG2884 17 ALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERpTSGQVLVNGQDLSRLKRREIPYLRRRIGVVFQDFRLLPDRTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 ---VTAVL--AGRlgqwslgrsllsllrpcDPAGARAE----LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLI 167
Cdd:COG2884 97 yenVALPLrvTGK-----------------SRKEIRRRvrevLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 168 LADEPVSALDPVLAQSSLDaLLAQARARGST-LIANlHAVELaLGRFP-RIIGLREGRVQFD 227
Cdd:COG2884 160 LADEPTGNLDPETSWEIME-LLEEINRRGTTvLIAT-HDLEL-VDRMPkRVLELEDGRLVRD 218
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
12-200 |
1.06e-35 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 126.47 E-value: 1.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPP- 89
Cdd:cd03257 14 GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAIlGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMs 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 -LPASQPV---VTAVLAGRLGQWSLGRSLlsllrpcdpAGARAELARLGLADKWQQRC-GELSGGQLQRVGIARVLYQQP 164
Cdd:cd03257 94 sLNPRMTIgeqIAEPLRIHGKLSKKEARK---------EAVLLLLVGVGLPEEVLNRYpHELSGGQRQRVAIARALALNP 164
|
170 180 190
....*....|....*....|....*....|....*.
gi 1960140318 165 DLILADEPVSALDPVLAQSSLDALLAQARARGSTLI 200
Cdd:cd03257 165 KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
10-224 |
1.32e-35 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 124.86 E-value: 1.32e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 10 GLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRlrsRIGMVWQQp 88
Cdd:cd03214 6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKpSSGEILLDGKDLASLSPKELAR---KIAYVPQA- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 plpasqpvvtavlagrlgqwslgrsllsllrpcdpagaraeLARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:cd03214 82 -----------------------------------------LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 169 ADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
14-242 |
1.93e-35 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 126.33 E-value: 1.93e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDPWtlstRDRQRLRSRIGMVWQQPPLPa 92
Cdd:COG1131 11 GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPtSGEVRVLGEDVA----RDPAEVRRRIGYVPQEPALY- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 sqPVVTA----VLAGRLgqwslgrsllsLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:COG1131 86 --PDLTVrenlRFFARL-----------YGLPRKEARERIDelLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPEL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 167 ILADEPVSALDPVLAQSSLDaLLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAVTPAMLAELY 242
Cdd:COG1131 153 LILDEPTSGLDPEARRELWE-LLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARLLEDVF 227
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
14-224 |
1.51e-34 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 123.41 E-value: 1.51e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpWTLSTRDRQRLRSRIGMVWQQ----P 88
Cdd:cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCInLLEEPDSGTIIIDGLK-LTDDKKNINELRQKVGMVFQQfnlfP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVVTAvLAGRLGQwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:cd03262 90 HLTVLENITLA-PIKVKGM------------SKAEAEERALelLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1960140318 167 ILADEPVSALDPVLAQSSLDALLAQARaRGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
12-226 |
4.15e-33 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 120.30 E-value: 4.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGE-GRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPL 90
Cdd:cd03261 9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDsGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PASQPVVTAVlA------GRLGQWSLGRSllsllrpcdpagARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQP 164
Cdd:cd03261 89 FDSLTVFENV-AfplrehTRLSEEEIREI------------VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 165 DLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQF 226
Cdd:cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA 217
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
14-223 |
6.78e-33 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 118.72 E-value: 6.78e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPplpA 92
Cdd:cd03225 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLnGLLGPTSGEVLVDGKD---LTKLSLKELRRKVGLVFQNP---D 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQ---PVVTAVLA---GRLGQwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQP 164
Cdd:cd03225 86 DQffgPTVEEEVAfglENLGL------------PEEEIEERVEeaLELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 165 DLILADEPVSALDPVlAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:cd03225 154 DILLLDEPTAGLDPA-GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
10-200 |
8.94e-33 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 119.22 E-value: 8.94e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 10 GLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQP 88
Cdd:cd03258 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCInGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVVTAV-LAGRLGQWslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:cd03258 92 NLLSSRTVFENVaLPLEIAGV-----------PKAEIEERVLelLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190
....*....|....*....|....*....|....*
gi 1960140318 166 LILADEPVSALDPVLAQSSLDALLAQARARGSTLI 200
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIV 195
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-233 |
9.50e-33 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 119.31 E-value: 9.50e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAValdgEGLRL--GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRL 77
Cdd:COG1127 5 MIEV----RNLTKsfGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRpDSGEILVDGQDITGLSEKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 RSRIGMVWQQPPLPASQPV---VTAVL--AGRLGQWSLGRSllsllrpcdpagARAELARLGLADKWQQRCGELSGGQLQ 152
Cdd:COG1127 81 RRRIGMLFQGGALFDSLTVfenVAFPLreHTDLSEAEIREL------------VLEKLELVGLPGAADKMPSELSGGMRK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 153 RVGIARVLYQQPDLILADEPVSALDPVLAQsSLDALLAQAR-ARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAA 231
Cdd:COG1127 149 RVALARALALDPEILLYDEPTAGLDPITSA-VIDELIRELRdELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPE 227
|
..
gi 1960140318 232 AV 233
Cdd:COG1127 228 EL 229
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
3-232 |
3.29e-32 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 117.53 E-value: 3.29e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 3 AVALDGEGLRLGQSR----ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRL 77
Cdd:COG4181 8 IIELRGLTKTVGTGAgeltILKGISLEVEAGESVAIVGASGSGKSTLLGLLaGLDRPTSGTVRLAGQDLFALDEDARARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 RSR-IGMVWQQPPLPASqpvVTAV--------LAGRlgqwslgrsllsllrPCDPAGARAELARLGLADKWQQRCGELSG 148
Cdd:COG4181 88 RARhVGFVFQSFQLLPT---LTALenvmlpleLAGR---------------RDARARARALLERVGLGHRLDHYPAQLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 149 GQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALgRFPRIIGLREGRVQFDC 228
Cdd:COG4181 150 GEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAA-RCDRVLRLRAGRLVEDT 228
|
....
gi 1960140318 229 PAAA 232
Cdd:COG4181 229 AATA 232
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
14-195 |
5.44e-32 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 119.80 E-value: 5.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPA 92
Cdd:COG1135 16 GPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCInLLERPTSGSVLVDGVDLTALSERELRAARRKIGMIFQHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAV-----LAGRlgqwslgrsllsllrpcdPAGARAE-----LARLGLADKWQQRCGELSGGQLQRVGIARVLYQ 162
Cdd:COG1135 96 SRTVAENValpleIAGV------------------PKAEIRKrvaelLELVGLSDKADAYPSQLSGGQKQRVGIARALAN 157
|
170 180 190
....*....|....*....|....*....|...
gi 1960140318 163 QPDLILADEPVSALDPVLAQSSLDaLLAQARAR 195
Cdd:COG1135 158 NPKVLLCDEATSALDPETTRSILD-LLKDINRE 189
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
22-227 |
8.33e-32 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 116.05 E-value: 8.33e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 22 FNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQPPLPASQPVVTAV 100
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIaGFETPQSGRVLINGVDVTAAPPADRP-----VSMLFQENNLFAHLTVEQNV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 101 LAGRlgqwslgrSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVL 180
Cdd:cd03298 92 GLGL--------SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1960140318 181 AQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFD 227
Cdd:cd03298 164 RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
12-223 |
9.58e-32 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 114.98 E-value: 9.58e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLtLWEQDPWTLSTRDRQRLRSRIGMVWQQPPL 90
Cdd:cd03229 9 RYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIaGLEEPDSGSI-LIDGEDLTDLEDELPPLRRRIGMVFQDFAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PasqPVVTAvlagrlgqwslgrsllsllrpcdpagaraeLARLGLAdkwqqrcgeLSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:cd03229 88 F---PHLTV------------------------------LENIALG---------LSGGQQQRVALARALAMDPDVLLLD 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 171 EPVSALDPVLAQsSLDALLAQARAR-GSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:cd03229 126 EPTSALDPITRR-EVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-225 |
9.78e-32 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 116.08 E-value: 9.78e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRqrlrsRIGMV 84
Cdd:cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIaGLERPDSGEILIDGRDVTGVPPERR-----NIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 85 WQQPPLPASQPVV-TAVLAGRLGQWSLGRSLLSllrpcdpagARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQ 163
Cdd:cd03259 78 FQDYALFPHLTVAeNIAFGLKLRGVPKAEIRAR---------VRELLELVGLEGLLNRYPHELSGGQQQRVALARALARE 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 164 PDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQ 225
Cdd:cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
12-233 |
5.47e-31 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 114.80 E-value: 5.47e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-------GTELRGEGrltLWEQDPwtlsTRDRQRLRSRIGMV 84
Cdd:PRK09493 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCInkleeitSGDLIVDG---LKVNDP----KVDERLIRQEAGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 85 WQQ----PPLPASQPVVTAVLAGRlGQWSLGRSLLsllrpcdpagARAELARLGLADKWQQRCGELSGGQLQRVGIARVL 160
Cdd:PRK09493 83 FQQfylfPHLTALENVMFGPLRVR-GASKEEAEKQ----------ARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 161 YQQPDLILADEPVSALDPVLAQSSLDALLAQARaRGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-242 |
1.46e-30 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 114.03 E-value: 1.46e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR----------GE--GRLTLWEqdpwt 68
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPptygndvrlfGErrGGEDVWE----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 69 lstrdrqrLRSRIGMV--WQQPPLPASQPVVTAVLAGR---LGQWSLGRSLLSLLrpcdpagARAELARLGLADKWQQRC 143
Cdd:COG1119 76 --------LRKRIGLVspALQLRFPRDETVLDVVLSGFfdsIGLYREPTDEQRER-------ARELLELLGLAHLADRPF 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 144 GELSGGQLQRVGIARVLYQQPDLILADEPVSALDPvLAQSSLDALLAQ-ARARGSTLIANLHAVELALGRFPRIIGLREG 222
Cdd:COG1119 141 GTLSQGEQRRVLIARALVKDPELLILDEPTAGLDL-GARELLLALLDKlAAEGAPTLVLVTHHVEEIPPGITHVLLLKDG 219
|
250 260
....*....|....*....|.
gi 1960140318 223 RVQFDCPAAAV-TPAMLAELY 242
Cdd:COG1119 220 RVVAAGPKEEVlTSENLSEAF 240
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
17-233 |
1.85e-30 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 118.08 E-value: 1.85e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPplpASQ- 94
Cdd:COG1123 279 RAVDDVSLTLRRGETLGLVGESGSGKSTLARLLlGLLRPTSGSILFDGKDLTKLSRRSLRELRRRVQMVFQDP---YSSl 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 95 -PVVTavlagrLGQWSLGRSLLSLLRPCDPAGARAE--LARLGL-ADKWQQRCGELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:COG1123 356 nPRMT------VGDIIAEPLRLHGLLSRAERRERVAelLERVGLpPDLADRYPHELSGGQRQRVAIARALALEPKLLILD 429
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 171 EPVSALDPVLAQSSLDALLAQARARGSTLIA---NLHAV-ELAlgrfPRIIGLREGRVQFDCPAAAV 233
Cdd:COG1123 430 EPTSALDVSVQAQILNLLRDLQRELGLTYLFishDLAVVrYIA----DRVAVMYDGRIVEDGPTEEV 492
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
9-201 |
2.29e-30 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 112.66 E-value: 2.29e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 9 EGLRL--GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI------GTELRGEGRLTLWEQDPWTLSTrDRQRLRSR 80
Cdd:cd03260 4 RDLNVyyGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLnrlndlIPGAPDEGEVLLDGKDIYDLDV-DVLELRRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 IGMVWQQP-PLPASqpvVTAVLAgrLGQWSLGRSLLsllrpcDPAGARAE--LARLGLADKWQQR--CGELSGGQLQRVG 155
Cdd:cd03260 83 VGMVFQKPnPFPGS---IYDNVA--YGLRLHGIKLK------EELDERVEeaLRKAALWDEVKDRlhALGLSGGQQQRLC 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1960140318 156 IARVLYQQPDLILADEPVSALDPVlAQSSLDALLAQARARGSTLIA 201
Cdd:cd03260 152 LARALANEPEVLLLDEPTSALDPI-STAKIEELIAELKKEYTIVIV 196
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
10-242 |
2.64e-30 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 113.29 E-value: 2.64e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 10 GLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDPWTLSTRDRQRLRsriGMVWQQP 88
Cdd:COG4559 8 SVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPsSGEVRLNGRPLAAWSPWELARRR---AVLPQHS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVVTAVLAGRLGQwslgrsllSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQ------ 162
Cdd:COG4559 85 SLAFPFTVEEVVALGRAPH--------GSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwepvd 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 163 -QPDLILADEPVSALDPVLAQSSLDaLLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV-TPAMLAE 240
Cdd:COG4559 157 gGPRWLFLDEPTSALDLAHQHAVLR-LARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVlTDELLER 235
|
..
gi 1960140318 241 LY 242
Cdd:COG4559 236 VY 237
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
11-223 |
3.03e-30 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 110.41 E-value: 3.03e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 11 LRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQqpp 89
Cdd:cd00267 7 FRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKpTSGEILIDGKD---IAKLPLEELRRRIGYVPQ--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 lpasqpvvtavlagrlgqwslgrsllsllrpcdpagaraelarlgladkwqqrcgeLSGGQLQRVGIARVLYQQPDLILA 169
Cdd:cd00267 81 --------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 170 DEPVSALDPVLAQsSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:cd00267 105 DEPTSGLDPASRE-RLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
22-241 |
4.47e-30 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 112.16 E-value: 4.47e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 22 FNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQPPLPASQPVVTAV 100
Cdd:COG3840 18 FDLTIAAGERVAILGPSGAGKSTLLNLIaGFLPPDSGRILWNGQDLTALPPAERP-----VSMLFQENNLFPHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 101 LAG-----RLGqwslgrsllsllrPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:COG3840 93 GLGlrpglKLT-------------AEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 176 LDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAVT----PAMLAEL 241
Cdd:COG3840 160 LDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLdgepPPALAAY 229
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
17-223 |
2.43e-29 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 109.65 E-value: 2.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPASQP 95
Cdd:TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLyGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 VVTAV-LAGRLGQWSLGRSLLSllrpcdpagARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVS 174
Cdd:TIGR02673 96 VYENVaLPLEVRGKKEREIQRR---------VGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1960140318 175 ALDPVLAQSSLDaLLAQARARGSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:TIGR02673 167 NLDPDLSERILD-LLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-242 |
6.66e-29 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 109.86 E-value: 6.66e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGL--RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDpwtLSTRDRQRLRSR 80
Cdd:PRK13548 1 AMLEARNLsvRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSpDSGEVRLNGRP---LADWSPAELARR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 IGMVWQQPPLPASQPVVTAVLAGRLGqWSLGRSLlsllrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVL 160
Cdd:PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAP-HGLSRAE-------DDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 161 YQ------QPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELAlGRFP-RIIGLREGRVQFD-CPAAA 232
Cdd:PRK13548 150 AQlwepdgPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLA-ARYAdRIVLLHQGRLVADgTPAEV 228
|
250
....*....|
gi 1960140318 233 VTPAMLAELY 242
Cdd:PRK13548 229 LTPETLRRVY 238
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
19-172 |
7.93e-29 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 106.58 E-value: 7.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLPASQPVV 97
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPtEGTILLDGQD---LTDDERKSLRKEIGYVFQDPQLFPRLTVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLAGRLGQWSLGrsllsllrpcDPAGARAE--LARLGLADKWQQRCG----ELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:pfam00005 78 ENLRLGLLLKGLSK----------REKDARAEeaLEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
.
gi 1960140318 172 P 172
Cdd:pfam00005 148 P 148
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
18-223 |
8.91e-29 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 107.08 E-value: 8.91e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLpasqpv 96
Cdd:cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPtSGEILIDGVD---LRDLDLESLRKNIAYVPQDPFL------ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 vtavLAGRLgqwslgrsllsllrpcdpagaRAELarlgladkwqqrcgeLSGGQLQRVGIARVLYQQPDLILADEPVSAL 176
Cdd:cd03228 88 ----FSGTI---------------------RENI---------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1960140318 177 DPVLAQSSLDALLAQARARGSTLIA-NLHAVELALgrfpRIIGLREGR 223
Cdd:cd03228 128 DPETEALILEALRALAKGKTVIVIAhRLSTIRDAD----RIIVLDDGR 171
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
10-200 |
9.19e-29 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 109.41 E-value: 9.19e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 10 GLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPwtlstrdrQRLRSRIGMVWQQP 88
Cdd:COG1116 18 PTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIaGLEKPTSGEVLVDGKPV--------TGPGPDRGVVFQEP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PL-P---ASQPVVTAVLAGRLgqwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQ 162
Cdd:COG1116 90 ALlPwltVLDNVALGLELRGV--------------PKAERRERARelLELVGLAGFEDAYPHQLSGGMRQRVAIARALAN 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1960140318 163 QPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLI 200
Cdd:COG1116 156 DPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVL 193
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
10-233 |
1.14e-28 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 108.74 E-value: 1.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 10 GLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQP 88
Cdd:COG1124 12 GQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALaGLERPWSGEVTFDGRP---VTRRRRKAFRRRVQMVFQDP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLpASQPV--VTAVLAGRLgqwslgrslLSLLRPCDPAGARAELARLGLADKWQQRC-GELSGGQLQRVGIARVLYQQPD 165
Cdd:COG1124 89 YA-SLHPRhtVDRILAEPL---------RIHGLPDREERIAELLEQVGLPPSFLDRYpHQLSGGQRQRVAIARALILEPE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 166 LILADEPVSALDPVLaQSSLDALLAQARA-RGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:COG1124 159 LLLLDEPTSALDVSV-QAEILNLLKDLREeRGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADL 226
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
10-213 |
3.56e-28 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 106.41 E-value: 3.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 10 GLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPwtlsTRDRQRLRSRIGMVWQQP 88
Cdd:COG4133 9 SCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILaGLLPPSAGEVLWNGEPI----RDAREDYRRRLAYLGHAD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVVT--AVLAGRLGqwslgrsllsllRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:COG4133 85 GLKPELTVREnlRFWAALYG------------LRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 167 ILADEPVSALDpVLAQSSLDALLAQARARGSTLIANLH-------AVELALGRF 213
Cdd:COG4133 153 WLLDEPFTALD-AAGVALLAELIAAHLARGGAVLLTTHqplelaaARVLDLGDF 205
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
23-233 |
6.30e-28 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 106.75 E-value: 6.30e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRLRsrIGMVWQQPPLPASQPVVTAVL 101
Cdd:cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRpTSGSVLFDGEDITGLPPHEIARLG--IGRTFQIPRLFPELTVLENVM 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 102 AGRLGQWSLGRSLLSLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPV 179
Cdd:cd03219 98 VAAQARTGSGLLLARARREEREARERAEelLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 180 LAQsSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:cd03219 178 ETE-ELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
14-224 |
1.11e-27 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 106.25 E-value: 1.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG-TELRGEGRLTLWEQD---PWTLSTRDRQRLRSRIGMVWQQ-- 87
Cdd:COG4161 13 GSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNlLETPDSGQLNIAGHQfdfSQKPSEKAIRLLRQKVGMVFQQyn 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 --PPLPASQPVVTAvlagrlgqwslgrsllsllrPC-------DPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGI 156
Cdd:COG4161 93 lwPHLTVMENLIEA--------------------PCkvlglskEQAREKAMklLARLRLTDKADRFPLHLSGGQQQRVAI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 157 ARVLYQQPDLILADEPVSALDP-VLAQssLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:COG4161 153 ARALMMEPQVLLFDEPTAALDPeITAQ--VVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
19-191 |
3.23e-27 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 107.19 E-value: 3.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPASQPVV 97
Cdd:PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCInLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAV-----LAGRlgqwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:PRK11153 101 DNValpleLAGT---------------PKAEIKARVTelLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
|
170 180
....*....|....*....|.
gi 1960140318 171 EPVSALDPVLAQSSLDaLLAQ 191
Cdd:PRK11153 166 EATSALDPATTRSILE-LLKD 185
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
18-224 |
6.01e-27 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 103.71 E-value: 6.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLtlweqdpwTLSTRDRQRLRSRIGMVWQQPPLPASQPV 96
Cdd:cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERpTSGEV--------LVDGEPVTGPGPDRGYVFQQDALLPWLTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAVLAGRLGQWSLGRSLLSLlrpcdpagARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSAL 176
Cdd:cd03293 91 LDNVALGLELQGVPKAEARER--------AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 177 DPVLAQSSLDALLAQARARGSTLIANLHAVE--LALGRfpRIIGL--REGRV 224
Cdd:cd03293 163 DALTREQLQEELLDIWRETGKTVLLVTHDIDeaVFLAD--RVVVLsaRPGRI 212
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
12-224 |
6.08e-27 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 102.09 E-value: 6.08e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWtlstRDRQRLRSRIGMVWQQPPL 90
Cdd:cd03230 9 RYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKpDSGEIKVLGKDIK----KEPEEVKRRIGYLPEEPSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PASqpvvtavLAGRlgqwslgrsllsllrpcdpagaraELARLgladkwqqrcgelSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:cd03230 85 YEN-------LTVR------------------------ENLKL-------------SGGMKQRLALAQALLHDPELLILD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 171 EPVSALDPVlAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03230 121 EPTSGLDPE-SRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
19-224 |
2.88e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 101.72 E-value: 2.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPASQPVV 97
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIyKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAV-LAGRLGQWSLGRSllsllrpcdPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSAL 176
Cdd:cd03292 97 ENVaFALEVTGVPPREI---------RKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1960140318 177 DPVLAQSSLDaLLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03292 168 DPDTTWEIMN-LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
4-179 |
4.53e-26 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 102.04 E-value: 4.53e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGLRL--GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-------LIGtELRGEGRLTLWEQDpwTLSTR-D 73
Cdd:COG1117 10 PKIEVRNLNVyyGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRclnrmndLIP-GARVEGEILLDGED--IYDPDvD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 74 RQRLRSRIGMVWQQP-PLPASqpVVTAVLAG-RLGQWSLgrsllsllrpcdpagaRAELA--------RLGL----ADKW 139
Cdd:COG1117 87 VVELRRRVGMVFQKPnPFPKS--IYDNVAYGlRLHGIKS----------------KSELDeiveeslrKAALwdevKDRL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1960140318 140 QQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPV 179
Cdd:COG1117 149 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPI 188
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
14-224 |
1.96e-25 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 100.09 E-value: 1.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG-TELRGEGRLTL------WEQDPwtlSTRDRQRLRSRIGMVWQ 86
Cdd:PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNlLEMPRSGTLNIagnhfdFSKTP---SDKAIRELRRNVGMVFQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 87 Q----PPLPASQPVVTAvlagrlgqwslgrsllsllrPC-------DPAGARAE--LARLGLADKWQQRCGELSGGQLQR 153
Cdd:PRK11124 90 QynlwPHLTVQQNLIEA--------------------PCrvlglskDQALARAEklLERLRLKPYADRFPLHLSGGQQQR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 154 VGIARVLYQQPDLILADEPVSALDP-VLAQ-SSLDALLAQArarGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPeITAQiVSIIRELAET---GITQVIVTHEVEVARKTASRVVYMENGHI 219
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
14-229 |
3.19e-25 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 99.68 E-value: 3.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGT-------ELRGEGRLTLwEQDPwtlstrdrQRLRSRIGMVWQ 86
Cdd:cd03295 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRlieptsgEIFIDGEDIR-EQDP--------VELRRKIGYVIQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 87 Q----PPLPASQPVVtavLAGRLGQWSLGRSLlsllrpcdpagARA-ELARL------GLADKWQqrcGELSGGQLQRVG 155
Cdd:cd03295 83 QiglfPHMTVEENIA---LVPKLLKWPKEKIR-----------ERAdELLALvgldpaEFADRYP---HELSGGQQQRVG 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 156 IARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGR-VQFDCP 229
Cdd:cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEiVQVGTP 220
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
14-233 |
3.31e-25 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 99.82 E-value: 3.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQsRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG-TELRGEGRLTLWE-----QDPWTLSTRDRQRLRSRIGMVWQQ 87
Cdd:PRK11264 15 GQ-TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINlLEQPEAGTIRVGDitidtARSLSQQKGLIRQLRQHVGFVFQN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 PPLPASQPVVTAVLAGRLgqwslgrslLSLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:PRK11264 94 FNLFPHRTVLENIIEGPV---------IVKGEPKEEATARARelLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1960140318 166 LILADEPVSALDPVLAQSSLDALLAQARARgSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:PRK11264 165 VILFDEPTSALDPELVGEVLNTIRQLAQEK-RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
14-230 |
3.44e-25 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 103.65 E-value: 3.44e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGT-ELRGEGRLTLWEQDPWTLSTRDRQRLR-SRIGMVWQQ---- 87
Cdd:PRK10535 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGClDKPTSGTYRVAGQDVATLDADALAQLRrEHFGFIFQRyhll 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 PPLPASQPV-VTAVLAG-----RLgqwslgrsllsllrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLY 161
Cdd:PRK10535 99 SHLTAAQNVeVPAVYAGlerkqRL------------------LRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 162 QQPDLILADEPVSALDpvlAQSSLD--ALLAQARARGSTLIANLHAVELAlGRFPRIIGLREGRVQFDCPA 230
Cdd:PRK10535 161 NGGQVILADEPTGALD---SHSGEEvmAILHQLRDRGHTVIIVTHDPQVA-AQAERVIEIRDGEIVRNPPA 227
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
14-219 |
4.64e-25 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 98.46 E-value: 4.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG-TELRGEGRLTLWEQDPWTLSTRD-RQRLRSRIGMVWQQPPLP 91
Cdd:TIGR03608 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGlLEKFDSGQVYLNGQETPPLNSKKaSKFRREKLGYLFQNFALI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 92 ASQPVVTAVLAGRLGQWSLGRSLLSLLRPCdpagaraeLARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:TIGR03608 89 ENETVEENLDLGLKYKKLSKKEKREKKKEA--------LEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADE 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1960140318 172 PVSALDPVLAQSSLDALLAQARaRGSTLIANLHAVELAlGRFPRIIGL 219
Cdd:TIGR03608 161 PTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPEVA-KQADRVIEL 206
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
18-224 |
4.76e-25 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 103.38 E-value: 4.76e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQP-------- 88
Cdd:COG2274 490 VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLlGLYEPTSGRILIDGID---LRQIDPASLRRQIGVVLQDVflfsgtir 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 -------PLPASQPVVTAvlagrlgqwslgrsllsllrpCDPAGARAELARLglADKWQQRCGE----LSGGQLQRVGIA 157
Cdd:COG2274 567 enitlgdPDATDEEIIEA---------------------ARLAGLHDFIEAL--PMGYDTVVGEggsnLSGGQRQRLAIA 623
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 158 RVLYQQPDLILADEPVSALDPVLAQSSLDALlaQARARGSTLIA---NLHAVELAlgrfPRIIGLREGRV 224
Cdd:COG2274 624 RALLRNPRILILDEATSALDAETEAIILENL--RRLLKGRTVIIiahRLSTIRLA----DRIIVLDKGRI 687
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
12-233 |
5.93e-25 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 99.27 E-value: 5.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG-TELRGEGRLTLWEQDPWTLSTRDRQ----------RLRSR 80
Cdd:PRK10619 14 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINfLEKPSEGSIVVNGQTINLVRDKDGQlkvadknqlrLLRTR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 IGMVWQQPPLPASQPVVTAVLAGRLGQWSLGRSLlsllrpcdpAGARAE--LARLGLADKWQQRC-GELSGGQLQRVGIA 157
Cdd:PRK10619 94 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQE---------ARERAVkyLAKVGIDERAQGKYpVHLSGGQQQRVSIA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 158 RVLYQQPDLILADEPVSALDPVLAQSSLdALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:PRK10619 165 RALAMEPEVLLFDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
4-227 |
9.52e-25 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 97.65 E-value: 9.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGLRLGQSRILQPFNLQIAAGeCVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPwtlsTRDRQRLRSRIG 82
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPpSSGTIRIDGQDV----LKQPQKLRRRIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 83 MVWQQPPLPASQPVV-----TAVLAGrlgqwslgrsllsllrpCDPAGARAE----LARLGLADKWQQRCGELSGGQLQR 153
Cdd:cd03264 76 YLPQEFGVYPNFTVRefldyIAWLKG-----------------IPSKEVKARvdevLELVNLGDRAKKKIGSLSGGMRRR 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 154 VGIARVLYQQPDLILADEPVSALDPV--LAQSSLDALLAQARargsTLIANLHAVELALGRFPRIIGLREGRVQFD 227
Cdd:cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEerIRFRNLLSELGEDR----IVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
19-243 |
1.75e-24 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 97.60 E-value: 1.75e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLPASQPVVt 98
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLLPGQGEILLNGRP---LSDWSAAELARHRAYLSQQQSPPFAMPVF- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 99 AVLAgrLGQwslgrsllslLRPCDPAGARAELA----RLGLADKWQQRCGELSGGQLQRVGIARVLYQ-------QPDLI 167
Cdd:COG4138 88 QYLA--LHQ----------PAGASSEAVEQLLAqlaeALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 168 LADEPVSALDpVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV-TPAMLAELYA 243
Cdd:COG4138 156 LLDEPMNSLD-VAQQAALDRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVmTPENLSEVFG 231
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-180 |
4.80e-24 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 98.63 E-value: 4.80e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAVALDGEGL--RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpWT-LSTRDRqr 76
Cdd:COG3842 1 MAMPALELENVskRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIaGFETPDSGRILLDGRD-VTgLPPEKR-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 77 lrsRIGMVWQQPPL-------------------PASQpvvtavlagrlgqwslgrsllsllrpcdpAGARAE--LARLGL 135
Cdd:COG3842 78 ---NVGMVFQDYALfphltvaenvafglrmrgvPKAE-----------------------------IRARVAelLELVGL 125
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1960140318 136 ADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVL 180
Cdd:COG3842 126 EGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAKL 170
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
23-200 |
6.96e-24 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 97.43 E-value: 6.96e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKT----SLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRLR-SRIGMVWQQPpLPASQPVV 97
Cdd:COG0444 25 SFDVRRGETLGLVGESGSGKStlarAILGLLPPPGITSGEILFDGEDLLKLSEKELRKIRgREIQMIFQDP-MTSLNPVM 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 T-------AVLAGRlgqwslgrsllsllrPCDPAGARAE----LARLGLADKwQQRCG----ELSGGQLQRVGIARVLYQ 162
Cdd:COG0444 104 TvgdqiaePLRIHG---------------GLSKAEARERaielLERVGLPDP-ERRLDryphELSGGMRQRVMIARALAL 167
|
170 180 190
....*....|....*....|....*....|....*....
gi 1960140318 163 QPDLILADEPVSALDpVLAQSS-LDALLAQARARGSTLI 200
Cdd:COG0444 168 EPKLLIADEPTTALD-VTIQAQiLNLLKDLQRELGLAIL 205
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
3-180 |
1.50e-23 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 95.64 E-value: 1.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 3 AVALDGEGL--RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG-TELRGEGRLTL-WEQDPWT------LSTR 72
Cdd:COG4598 6 PPALEVRDLhkSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINlLETPDSGEIRVgGEEIRLKpdrdgeLVPA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 73 DR---QRLRSRIGMVWQQPPLPASQPVVTAVLAGR---LGQwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCG 144
Cdd:COG4598 86 DRrqlQRIRTRLGMVFQSFNLWSHMTVLENVIEAPvhvLGR------------PKAEAIERAEalLAKVGLADKRDAYPA 153
|
170 180 190
....*....|....*....|....*....|....*.
gi 1960140318 145 ELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVL 180
Cdd:COG4598 154 HLSGGQQQRAAIARALAMEPEVMLFDEPTSALDPEL 189
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
18-224 |
2.07e-23 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 94.60 E-value: 2.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgteLR----GEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPL--- 90
Cdd:cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL---FRfydvSSGSILIDGQD---IREVTLDSLRRAIGVVPQDTVLfnd 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 -----------PAS-QPVVTAVLAGRLGQwslgrsllsllrpcdpagaraelARLGLADKWQQRCGE----LSGGQLQRV 154
Cdd:cd03253 90 tigynirygrpDATdEEVIEAAKAAQIHD-----------------------KIMRFPDGYDTIVGErglkLSGGEKQRV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 155 GIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIA-NLHAVELAlgrfPRIIGLREGRV 224
Cdd:cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAhRLSTIVNA----DKIIVLKDGRI 213
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
19-217 |
2.93e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 93.07 E-value: 2.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRgegrltlweqdpwTLSTRDRQRLRSRIGMVWQQPPLPASQPVvT 98
Cdd:NF040873 8 LHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLR-------------PTSGTVRRAGGARVAYVPQRSEVPDSLPL-T 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 99 AVLAGRLGQWSLGRSLLSLLRPcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDP 178
Cdd:NF040873 74 VRDLVAMGRWARRGLWRRLTRD-DRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDA 152
|
170 180 190
....*....|....*....|....*....|....*....
gi 1960140318 179 VlAQSSLDALLAQARARGSTLIANLHAVELALGRFPRII 217
Cdd:NF040873 153 E-SRERIIALLAEEHARGATVVVVTHDLELVRRADPCVL 190
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
18-224 |
3.50e-23 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 92.28 E-value: 3.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLweqDPWTLSTRDRQRLRSRIGMVWQQPPLpasqpv 96
Cdd:cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLIlGLLRPTSGRVRL---DGADISQWDPNELGDHVGYLPQDDEL------ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 vtavLAGRLGQwslgrsllsllrpcdpagaraelarlgladkwqqrcGELSGGQLQRVGIARVLYQQPDLILADEPVSAL 176
Cdd:cd03246 88 ----FSGSIAE------------------------------------NILSGGQRQRLGLARALYGNPRILVLDEPNSHL 127
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1960140318 177 DpVLAQSSLDALLAQARARGSTLIANLHAVELaLGRFPRIIGLREGRV 224
Cdd:cd03246 128 D-VEGERALNQAIAALKAAGATRIVIAHRPET-LASADRILVLEDGRV 173
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
17-224 |
3.88e-23 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 97.52 E-value: 3.88e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLP---- 91
Cdd:COG4988 351 PALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPySGSILINGVD---LSDLDPASWRRQIAWVPQNPYLFagti 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 92 ----------ASQPVVTAVLAGrlgqwslgrsllsllrpcdpAGARAELARlgLADKWQQRCGE----LSGGQLQRVGIA 157
Cdd:COG4988 428 renlrlgrpdASDEELEAALEA--------------------AGLDEFVAA--LPDGLDTPLGEggrgLSGGQAQRLALA 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1960140318 158 RVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIA-NLHAVELAlgrfPRIIGLREGRV 224
Cdd:COG4988 486 RALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILIThRLALLAQA----DRILVLDDGRI 549
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
23-249 |
6.81e-23 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 93.56 E-value: 6.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDpwtlSTRDRQRLRSRIGMV--WQQPPLPASQPVVTA 99
Cdd:COG0411 24 SLEVERGEIVGLIGPNGAGKTTLFNLITGFYRpTSGRILFDGRD----ITGLPPHRIARLGIArtFQNPRLFPELTVLEN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 100 VLAGRLGQ-----WSLGRSLLSLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:COG0411 100 VLVAAHARlgrglLAALLRLPRARREEREARERAEelLERVGLADRADEPAGNLSYGQQRRLEIARALATEPKLLLLDEP 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 173 VSALDPVLAQSSLDALLAQARARGSTLIA---NLHAV-ELAlgrfPRIIGLREGRVQFDCPAAAVT--PAMLaELYAGDD 246
Cdd:COG0411 180 AAGLNPEETEELAELIRRLRDERGITILLiehDMDLVmGLA----DRIVVLDFGRVIAEGTPAEVRadPRVI-EAYLGEE 254
|
...
gi 1960140318 247 EAA 249
Cdd:COG0411 255 AAA 257
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
18-224 |
1.41e-22 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 95.99 E-value: 1.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLigteLRG-----EGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPL-- 90
Cdd:COG4987 350 VLDGLSLTLPPGERVAIVGPSGSGKSTLLAL----LLRfldpqSGSITLGGVD---LRDLDEDDLRRRIAVVPQRPHLfd 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 ------------PASQPVVTAVLAgrlgqwslgrsllsllrpcdpagaRAELARL--GLADKWQQRCGE----LSGGQLQ 152
Cdd:COG4987 423 ttlrenlrlarpDATDEELWAALE------------------------RVGLGDWlaALPDGLDTWLGEggrrLSGGERR 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 153 RVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQarARGSTLIANLHAvELALGRFPRIIGLREGRV 224
Cdd:COG4987 479 RLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEA--LAGRTVLLITHR-LAGLERMDRILVLEDGRI 547
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
14-224 |
1.59e-22 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 96.00 E-value: 1.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgteLR----GEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPP 89
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLL---LRfydpTSGRILIDGVD---IRDLTLESLRRQIGVVPQDTF 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 L--------------PASQPVVTAVlagrlgqwslgrsllsllrpcdpagarAELARL-----GLADKWQQRCGE----L 146
Cdd:COG1132 425 LfsgtirenirygrpDATDEEVEEA---------------------------AKAAQAhefieALPDGYDTVVGErgvnL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 147 SGGQLQRVGIARVLYQQPDLILADEPVSALDPV---LAQSSLDALLaqaraRGSTLIA---NLHAVELAlgrfPRIIGLR 220
Cdd:COG1132 478 SGGQRQRIAIARALLKDPPILILDEATSALDTEteaLIQEALERLM-----KGRTTIViahRLSTIRNA----DRILVLD 548
|
....
gi 1960140318 221 EGRV 224
Cdd:COG1132 549 DGRI 552
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
19-204 |
2.66e-22 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 91.34 E-value: 2.66e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPW----TLSTRDRQRLRSR-IGMVwqqpplpa 92
Cdd:COG4778 27 LDGVSFSVAAGECVALTGPSGAGKSTLLKCIyGNYLPDSGSILVRHDGGWvdlaQASPREILALRRRtIGYV-------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQ-----PVVTA--VLAGRLGQWSLgrsllsllrpcDPAGARAE----LARLGLADK-WQQRCGELSGGQLQRVGIARVL 160
Cdd:COG4778 99 SQflrviPRVSAldVVAEPLLERGV-----------DREEARARarelLARLNLPERlWDLPPATFSGGEQQRVNIARGF 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1960140318 161 YQQPDLILADEPVSALDPVLAQSSLDaLLAQARARGSTLIANLH 204
Cdd:COG4778 168 IADPPLLLLDEPTASLDAANRAVVVE-LIEEAKARGTAIIGIFH 210
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
10-196 |
3.26e-22 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 91.00 E-value: 3.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 10 GLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGT---ELRGEGRLTLWEQDPWTLSTRDRqrlrsRIGMVW 85
Cdd:COG4136 8 TITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAaIAGTlspAFSASGEVLLNGRRLTALPAEQR-----RIGILF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 86 QQPPLPASQPVvtavlAGRLGqwslgrsllsLLRPCDPAG----ARAE--LARLGLADKWQQRCGELSGGQLQRVGIARV 159
Cdd:COG4136 83 QDDLLFPHLSV-----GENLA----------FALPPTIGRaqrrARVEqaLEEAGLAGFADRDPATLSGGQRARVALLRA 147
|
170 180 190
....*....|....*....|....*....|....*..
gi 1960140318 160 LYQQPDLILADEPVSALDPVLAQSSLDALLAQARARG 196
Cdd:COG4136 148 LLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRG 184
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
12-225 |
3.61e-22 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 91.14 E-value: 3.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQ--- 87
Cdd:cd03300 9 FYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIaGFETPTSGEILLDGKDITNLPPHKRP-----VNTVFQNyal 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 -PPLPASQPVVTAVLAGRLgqwslgrsllsllrpcDPAGARAELARL-------GLADKwqqRCGELSGGQLQRVGIARV 159
Cdd:cd03300 84 fPHLTVFENIAFGLRLKKL----------------PKAEIKERVAEAldlvqleGYANR---KPSQLSGGQQQRVAIARA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 160 LYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQ 225
Cdd:cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
10-172 |
8.12e-22 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 93.59 E-value: 8.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 10 GLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLweqdpwtlstrdRQRLrsRIGMVWQQP 88
Cdd:COG0488 5 SKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPdSGEVSI------------PKGL--RIGYLPQEP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVVTAVLAG--RLGQWSLGRSLLSLLRPCDPAG--------------------ARAE--LARLGL-ADKWQQRC 143
Cdd:COG0488 71 PLDDDLTVLDTVLDGdaELRALEAELEELEAKLAEPDEDlerlaelqeefealggweaeARAEeiLSGLGFpEEDLDRPV 150
|
170 180
....*....|....*....|....*....
gi 1960140318 144 GELSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:COG0488 151 SELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
15-225 |
8.62e-22 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 90.26 E-value: 8.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG---TELRGEgrlTLWEQDPW-TLSTRDRQRLRSR-IGMVWQ--- 86
Cdd:PRK11629 21 QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGgldTPTSGD---VIFNGQPMsKLSSAAKAELRNQkLGFIYQfhh 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 87 -QPPLPASQPVVTAVLAGRLGQWSLGRSllsllrpcdpagARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:PRK11629 98 lLPDFTALENVAMPLLIGKKKPAEINSR------------ALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 166 LILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELAlGRFPRIIGLREGRVQ 225
Cdd:PRK11629 166 LVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA-KRMSRQLEMRDGRLT 224
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
15-227 |
1.51e-21 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 90.59 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPplpAS 93
Cdd:TIGR04521 17 EKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKpTSGTVTIDGRDITAKKKKKLKDLRKKVGLVFQFP---EH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAVLA------GRLGqwslgrsllsllRPCDPAGARAE--LARLGLADKWQQR-CGELSGGQLQRVGIARVLYQQP 164
Cdd:TIGR04521 94 QLFEETVYKdiafgpKNLG------------LSEEEAEERVKeaLELVGLDEEYLERsPFELSGGQMRRVAIAGVLAMEP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 165 DLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFD 227
Cdd:TIGR04521 162 EVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLD 224
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-242 |
1.91e-21 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 91.29 E-value: 1.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRqrlrs 79
Cdd:COG3839 1 MASLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIaGLEDPTSGEILIGGRDVTDLPPKDR----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 80 RIGMVWQQP--------------PLpasqpvvtaVLAGRlgqwslgrsllsllrpcdPAGARAE-----LARLGLADKWQ 140
Cdd:COG3839 76 NIAMVFQSYalyphmtvyeniafPL---------KLRKV------------------PKAEIDRrvreaAELLGLEDLLD 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 141 QRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPvlaqssldALLAQARARgstlIANLHA-------------VE 207
Cdd:COG3839 129 RKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDA--------KLRVEMRAE----IKRLHRrlgtttiyvthdqVE 196
|
250 260 270
....*....|....*....|....*....|....*..
gi 1960140318 208 -LALGRfpRIIGLREGRV-QFDcpaaavTPamlAELY 242
Cdd:COG3839 197 aMTLAD--RIAVMNDGRIqQVG------TP---EELY 222
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
12-224 |
2.53e-21 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 89.63 E-value: 2.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRS-RIGMVWQQPP 89
Cdd:cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCInRLIEPTSGKVLIDGQDIAAMSRKELRELRRkKISMVFQSFA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 LPASQPVVTAV-----LAGRlgqwslgrsllsllrpcdPAGARAE-----LARLGLADKWQQRCGELSGGQLQRVGIARV 159
Cdd:cd03294 113 LLPHRTVLENVafgleVQGV------------------PRAEREEraaeaLELVGLEGWEHKYPDELSGGMQQRVGLARA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 160 LYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03294 175 LAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRL 239
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
22-252 |
3.37e-21 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 88.49 E-value: 3.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 22 FNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGE-GRLTLWEQDpwTLSTRDRQRLRSrigMVWQQ----PPLPASQPV 96
Cdd:PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAsGSLTLNGQD--HTTTPPSRRPVS---MLFQEnnlfSHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAVLAG-RLGqwslgrsllsllrpcdpAGARAELA----RLGLADKWQQRCGELSGGQLQRVGIARVLY-QQPDLILaD 170
Cdd:PRK10771 93 GLGLNPGlKLN-----------------AAQREKLHaiarQMGIEDLLARLPGQLSGGQRQRVALARCLVrEQPILLL-D 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 171 EPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAaavtpamlAELYAGDDEAAA 250
Cdd:PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPT--------DELLSGKASASA 226
|
..
gi 1960140318 251 CL 252
Cdd:PRK10771 227 LL 228
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
12-177 |
3.62e-21 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 90.59 E-value: 3.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWT-LSTRDRqrlrsRIGMVWQQPP 89
Cdd:COG1118 11 RFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIaGLETPDSGRIVLNGRDLFTnLPPRER-----RVGFVFQHYA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 L-------------PASQPVVTAVLAGRLGQWslgrsllsllrpcdpagaraeLARLGLADKWQQRCGELSGGQLQRVGI 156
Cdd:COG1118 86 LfphmtvaeniafgLRVRPPSKAEIRARVEEL---------------------LELVQLEGLADRYPSQLSGGQRQRVAL 144
|
170 180
....*....|....*....|.
gi 1960140318 157 ARVLYQQPDLILADEPVSALD 177
Cdd:COG1118 145 ARALAVEPEVLLLDEPFGALD 165
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
12-242 |
3.95e-21 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 88.99 E-value: 3.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLL----RLIGtelRGEGRLTLWEQDPWTLSTRDRQRlrsRIGMVWQQ 87
Cdd:COG4604 10 RYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLsmisRLLP---PDSGEVLVDGLDVATTPSRELAK---RLAILRQE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 PPL---------------PASQpvvtavlaGRLGqwslgrsllsllrPCDPAGARAELARLGLADKWQQRCGELSGGQLQ 152
Cdd:COG4604 84 NHInsrltvrelvafgrfPYSK--------GRLT-------------AEDREIIDEAIAYLDLEDLADRYLDELSGGQRQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 153 RVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFD-CPAA 231
Cdd:COG4604 143 RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQgTPEE 222
|
250
....*....|.
gi 1960140318 232 AVTPAMLAELY 242
Cdd:COG4604 223 IITPEVLSDIY 233
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
14-209 |
3.99e-21 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 87.48 E-value: 3.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPlpas 93
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 qpvvTAVLAGRLGQwSLGRSLLSLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:TIGR01166 79 ----DQLFAADVDQ-DVAFGPLNLGLSEAEVERRVReaLTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 1960140318 172 PVSALDPvLAQSSLDALLAQARARGSTLIANLHAVELA 209
Cdd:TIGR01166 154 PTAGLDP-AGREQMLAILRRLRAEGMTVVISTHDVDLA 190
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
12-224 |
6.20e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 87.34 E-value: 6.20e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLtLWEQDPWTLSTRDRqrlrsrIGMvwqqppL 90
Cdd:cd03269 9 RFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIlGIILPDSGEV-LFDGKPLDIAARNR------IGY------L 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 P-----------ASQPVVTAVLAGrlgqwslgrsllsllrpCDPAGARAE----LARLGLADKWQQRCGELSGGQLQRVG 155
Cdd:cd03269 76 PeerglypkmkvIDQLVYLAQLKG-----------------LKKEEARRRidewLERLELSEYANKRVEELSKGNQQKVQ 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 156 IARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARArGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRA 206
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
24-177 |
6.32e-21 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 89.79 E-value: 6.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 24 LQIAAGECVAIIGPSGAGKTSLLRLIgteLRGE----GRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQP--PLPASQPVV 97
Cdd:COG4608 39 FDIRRGETLGLVGESGCGKSTLGRLL---LRLEeptsGEILFDGQDITGLSGRELRPLRRRMQMVFQDPyaSLNPRMTVG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLAG----RLGqwslgrsllsllrpcdPAGARAE-----LARLGLADKWQQRC-GELSGGQLQRVGIARVLYQQPDLI 167
Cdd:COG4608 116 DIIAEPlrihGLA----------------SKAERRErvaelLELVGLRPEHADRYpHEFSGGQRQRIGIARALALNPKLI 179
|
170
....*....|
gi 1960140318 168 LADEPVSALD 177
Cdd:COG4608 180 VCDEPVSALD 189
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
18-227 |
8.27e-21 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 90.01 E-value: 8.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQPPLPASQPV 96
Cdd:PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIaGFETPDSGRIMLDGQDITHVPAENRH-----VNTVFQSYALFPHMTV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAVLAG-RLGQwslgrsllsllRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPV 173
Cdd:PRK09452 104 FENVAFGlRMQK-----------TPAAEITPRVMeaLRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 174 SALDPVL---AQSSLDALlaqARARGSTLIANLHAVELALGRFPRIIGLREGRVQFD 227
Cdd:PRK09452 173 SALDYKLrkqMQNELKAL---QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
14-179 |
9.93e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 88.30 E-value: 9.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-------LIGTeLRGEGRLTLWEQDPWTlSTRDRQRLRSRIGMVWQ 86
Cdd:PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRcfnrlndLIPG-FRVEGKVTFHGKNLYA-PDVDPVEVRRRIGMVFQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 87 QP-PLPASQPVVTAVLAGRLGQwslgrsllsllrpcdpAGARAELARLGL---------ADKWQQRCGELSGGQLQRVGI 156
Cdd:PRK14243 99 KPnPFPKSIYDNIAYGARINGY----------------KGDMDELVERSLrqaalwdevKDKLKQSGLSLSGGQQQRLCI 162
|
170 180
....*....|....*....|...
gi 1960140318 157 ARVLYQQPDLILADEPVSALDPV 179
Cdd:PRK14243 163 ARAIAVQPEVILMDEPCSALDPI 185
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
14-242 |
1.08e-20 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 87.76 E-value: 1.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGE-GRLTLWEQDPWTLSTRdrqRLRSRIGMVWQQPPLPA 92
Cdd:PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQsGTVFLGDKPISMLSSR---QLARRLALLPQHHLTPE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAGR---LGQWSLGRSLlsllrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILA 169
Cdd:PRK11231 90 GITVRELVAYGRspwLSLWGRLSAE-------DNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 170 DEPVSALDpVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFD-CPAAAVTPAMLAELY 242
Cdd:PRK11231 163 DEPTTYLD-INHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQgTPEEVMTPGLLRTVF 235
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
17-177 |
1.23e-20 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 90.51 E-value: 1.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSL----LRLIGTElrgeGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQP---- 88
Cdd:COG4172 300 KAVDGVSLTLRRGETLGLVGESGSGKSTLglalLRLIPSE----GEIRFDGQDLDGLSRRALRPLRRRMQVVFQDPfgsl 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 ------------PLPASQPVVTAvlAGRLGQwslgrsllsllrpcdpagARAELARLGLADKWQQRC-GELSGGQLQRVG 155
Cdd:COG4172 376 sprmtvgqiiaeGLRVHGPGLSA--AERRAR------------------VAEALEEVGLDPAARHRYpHEFSGGQRQRIA 435
|
170 180
....*....|....*....|..
gi 1960140318 156 IARVLYQQPDLILADEPVSALD 177
Cdd:COG4172 436 IARALILEPKLLVLDEPTSALD 457
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
13-224 |
1.44e-20 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 86.85 E-value: 1.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 13 LGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLP 91
Cdd:PRK10908 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLIcGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 92 ASQPVVTAVlagrlgqwslgrsllslLRPCDPAGARAE---------LARLGLADKWQQRCGELSGGQLQRVGIARVLYQ 162
Cdd:PRK10908 92 MDRTVYDNV-----------------AIPLIIAGASGDdirrrvsaaLDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 163 QPDLILADEPVSALDPVLAQSSLdALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:PRK10908 155 KPAVLLADEPTGNLDDALSEGIL-RLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
22-224 |
4.62e-20 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 85.30 E-value: 4.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 22 FNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQPPLPASQPVVTAV 100
Cdd:TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIaGFIEPASGSIKVNDQSHTGLAPYQRP-----VSMLFQENNLFAHLTVRQNI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 101 LAGrlgqwslgRSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVL 180
Cdd:TIGR01277 92 GLG--------LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1960140318 181 AQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:TIGR01277 164 REEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
14-209 |
4.73e-20 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 88.88 E-value: 4.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLstrDRQRLRSRIGMVWQQPPLPA 92
Cdd:TIGR02857 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLlGFVDPTEGSIAVNGVPLADA---DADSWRDQIAWVPQHPFLFA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 sQPVVTAVLAGRLGQWSLGRSLlsllrpcdpAGARAELARL--GLADKWQQRCGE----LSGGQLQRVGIARVLYQQPDL 166
Cdd:TIGR02857 410 -GTIAENIRLARPDASDAEIRE---------ALERAGLDEFvaALPQGLDTPIGEggagLSGGQAQRLALARAFLRDAPL 479
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1960140318 167 ILADEPVSALDPVLAQSSLDALLAQARARGSTLIAnlHAVELA 209
Cdd:TIGR02857 480 LLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT--HRLALA 520
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
23-177 |
4.73e-20 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 87.46 E-value: 4.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLwEQDPWtLSTRDRQRL---RSRIGMVWQQPPLPASQPVVT 98
Cdd:COG4148 19 DFTLPGRGVTALFGPSGSGKTTLLRAIaGLERPDSGRIRL-GGEVL-QDSARGIFLpphRRRIGYVFQEARLFPHLSVRG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 99 AVLAGRlgqwslgrsllsllRPCDPAGARAELAR----LGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVS 174
Cdd:COG4148 97 NLLYGR--------------KRAPRAERRISFDEvvelLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLA 162
|
...
gi 1960140318 175 ALD 177
Cdd:COG4148 163 ALD 165
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
18-224 |
7.31e-20 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 85.28 E-value: 7.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgteLR----GEGRLTLWEQDPWTLSTRDrqrLRSRIGMVWQQPPL--- 90
Cdd:cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL---ERfydpTSGEILLDGVDIRDLNLRW---LRSQIGLVSQEPVLfdg 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 -----------PASQPVVTAVlagrlgqwslgrsllsllrpCDPAGARAELArlGLADKWQQRCGE----LSGGQLQRVG 155
Cdd:cd03249 92 tiaenirygkpDATDEEVEEA--------------------AKKANIHDFIM--SLPDGYDTLVGErgsqLSGGQKQRIA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 156 IARVLYQQPDLILADEPVSALDPV---LAQSSLDALlaqarARGSTLIA---NLHAVELAlgrfPRIIGLREGRV 224
Cdd:cd03249 150 IARALLRNPKILLLDEATSALDAEsekLVQEALDRA-----MKGRTTIViahRLSTIRNA----DLIAVLQNGQV 215
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
14-177 |
1.13e-19 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 86.68 E-value: 1.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRqrlrsRIGMVWQQPPLPA 92
Cdd:PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIaGLEHQTSGHIRFHGTDVSRLHARDR-----KVGFVFQHYALFR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAGrlgqwslGRSLLSLLRPcDPAGARAELARL-------GLADKWQqrcGELSGGQLQRVGIARVLYQQPD 165
Cdd:PRK10851 88 HMTVFDNIAFG-------LTVLPRRERP-NAAAIKAKVTQLlemvqlaHLADRYP---AQLSGGQKQRVALARALAVEPQ 156
|
170
....*....|..
gi 1960140318 166 LILADEPVSALD 177
Cdd:PRK10851 157 ILLLDEPFGALD 168
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
14-239 |
1.27e-19 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 87.50 E-value: 1.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-G--TELRGEGRLtlweqDPWTLSTRDRQRLRSRIGMVWQQPPL 90
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLvGvwPPTAGSVRL-----DGADLSQWDREELGRHIGYLPQDVEL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 pasqpvvtavLAG-------RLGQwslgrsllsllrpCDPAG--ARAELAR-----LGLADKWQQRCGE----LSGGQLQ 152
Cdd:COG4618 418 ----------FDGtiaeniaRFGD-------------ADPEKvvAAAKLAGvhemiLRLPDGYDTRIGEggarLSGGQRQ 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 153 RVGIARVLYQQPDLILADEPVSALDPVLAQsSLDALLAQARARGSTLIANLHAVELaLGRFPRIIGLREGRVQFDCPAAA 232
Cdd:COG4618 475 RIGLARALYGDPRLVVLDEPNSNLDDEGEA-ALAAAIRALKARGATVVVITHRPSL-LAAVDKLLVLRDGRVQAFGPRDE 552
|
....*..
gi 1960140318 233 VTPAMLA 239
Cdd:COG4618 553 VLARLAR 559
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
11-227 |
1.42e-19 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 83.88 E-value: 1.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 11 LRLGQSRILQPFNLQIA---AGECVAIIGPSGAGKTSLLRLI-GTELRGEGRL----TLW--EQDPWTLSTRDRqrlrsR 80
Cdd:cd03297 2 LCVDIEKRLPDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIaGLEKPDGGTIvlngTVLfdSRKKINLPPQQR-----K 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 IGMVWQQ----PPLPASQPVVTAVLAGRLGQwslgrsllsllrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGI 156
Cdd:cd03297 77 IGLVFQQyalfPHLNVRENLAFGLKRKRNRE--------------DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVAL 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 157 ARVLYQQPDLILADEPVSALDPVLAQsSLDALLAQARAR--GSTLIANLHAVELALgRFPRIIGLREGRVQFD 227
Cdd:cd03297 143 ARALAAQPELLLLDEPFSALDRALRL-QLLPELKQIKKNlnIPVIFVTHDLSEAEY-LADRIVVMEDGRLQYI 213
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
14-233 |
1.63e-19 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 84.02 E-value: 1.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQDPWTLSTRdrQRLRSRIGMVWQQPPLPA 92
Cdd:cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKtIMGLLPPRSGSIRFDGRDITGLPPH--ERARAGIGYVPEGRRIFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAGRlgqwslgrsllsllRPCDPAGARAELARL-----GLADKWQQRCGELSGGQLQRVGIARVLYQQPDLI 167
Cdd:cd03224 89 ELTVEENLLLGA--------------YARRRAKRKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 168 LADEPVSALDPVLAQSSLDAlLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
14-224 |
2.08e-19 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 83.08 E-value: 2.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLtLWEQDPwtLSTRDRQRlrsRIGMVWQQPplpA 92
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILaGLIKESSGSI-LLNGKP--IKAKERRK---SIGYVMQDV---D 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAG-RLGqwslgrsllSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:cd03226 82 YQLFTDSVREElLLG---------LKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 172 PVSALDPVLAQsSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03226 153 PTSGLDYKNME-RVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
14-190 |
2.52e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 84.06 E-value: 2.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG------TELRGEGRLTLWEQDPWTLSTrDRQRLRSRIGMVWQQ 87
Cdd:PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmndlnPEVTITGSIVYNGHNIYSPRT-DTVDLRKEIGMVFQQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 P-PLPAS--QPVVTAV-LAGrlgqwslgrslLSLLRPCDPAGARAeLARLGLADKWQQRCGE----LSGGQLQRVGIARV 159
Cdd:PRK14239 95 PnPFPMSiyENVVYGLrLKG-----------IKDKQVLDEAVEKS-LKGASIWDEVKDRLHDsalgLSGGQQQRVCIARV 162
|
170 180 190
....*....|....*....|....*....|.
gi 1960140318 160 LYQQPDLILADEPVSALDPVLAQSSLDALLA 190
Cdd:PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLG 193
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
6-242 |
2.57e-19 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 84.27 E-value: 2.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRLGQSR--ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQRlrsRIG 82
Cdd:PRK10253 8 LRGEQLTLGYGKytVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTpAHGHVWLDGEHIQHYASKEVAR---RIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 83 MVWQQPPLPASQPVVTAVLAGR------LGQWSLGrsllsllrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGI 156
Cdd:PRK10253 85 LLAQNATTPGDITVQELVARGRyphqplFTRWRKE----------DEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 157 ARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQA-RARGSTLIANLHAVELALGRFPRIIGLREGR-VQFDCPAAAVT 234
Cdd:PRK10253 155 AMVLAQETAIMLLDEPTTWLD-ISHQIDLLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKiVAQGAPKEIVT 233
|
....*...
gi 1960140318 235 PAMLAELY 242
Cdd:PRK10253 234 AELIERIY 241
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-243 |
2.59e-19 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 83.96 E-value: 2.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 2 IAVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLtLWEQDPWTlSTRDRQRlrsr 80
Cdd:PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLaGLETPSAGEL-LAGTAPLA-EAREDTR---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 igMVWQQPPLPASQPVVTAVLAGRLGQWSlgrsllsllrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVL 160
Cdd:PRK11247 85 --LMFQDARLLPWKKVIDNVGLGLKGQWR--------------DAALQALAAVGLADRANEWPAALSGGQKQRVALARAL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 161 YQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAVTP----- 235
Cdd:PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDLPRPrrrgs 228
|
....*...
gi 1960140318 236 AMLAELYA 243
Cdd:PRK11247 229 ARLAELEA 236
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
12-177 |
2.65e-19 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 83.93 E-value: 2.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQPPL 90
Cdd:cd03296 11 RFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIaGLERPDSGTILFGGEDATDVPVQERN-----VGFVFQHYAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PASQPVVTAVLAGrlgqwsLGRSLLSLLRPCDPAGARA-ELARL----GLADKWQQrcgELSGGQLQRVGIARVLYQQPD 165
Cdd:cd03296 86 FRHMTVFDNVAFG------LRVKPRSERPPEAEIRAKVhELLKLvqldWLADRYPA---QLSGGQRQRVALARALAVEPK 156
|
170
....*....|..
gi 1960140318 166 LILADEPVSALD 177
Cdd:cd03296 157 VLLLDEPFGALD 168
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
18-227 |
2.82e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 82.36 E-value: 2.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDPWTLstrdRQRLRSRIGMVWQQPPLpasqpv 96
Cdd:cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPqQGEITLDGVPVSDL----EKALSSLISVLNQRPYL------ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 vtavLAGRLGQwslgrsllsllrpcdpagaraelaRLGLadkwqqrcgELSGGQLQRVGIARVLYQQPDLILADEPVSAL 176
Cdd:cd03247 87 ----FDTTLRN------------------------NLGR---------RFSGGERQRLALARILLQDAPIVLLDEPTVGL 129
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 177 DPVLAQSSLDALLAQarARGSTLIANLHAVeLALGRFPRIIGLREGRVQFD 227
Cdd:cd03247 130 DPITERQLLSLIFEV--LKDKTLIWITHHL-TGIEHMDKILFLENGKIIMQ 177
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
18-224 |
3.27e-19 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 83.43 E-value: 3.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgteLR----GEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLpAS 93
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLI---PRfydvDSGRILIDGHD---VRDYTLASLRRQIGLVSQDVFL-FN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAVLAGRLGQWSLGRSllsllrpcdpAGARAELAR---LGLADKWQQRCGE----LSGGQLQRVGIARVLYQQPDL 166
Cdd:cd03251 90 DTVAENIAYGRPGATREEVE----------EAARAANAHefiMELPEGYDTVIGErgvkLSGGQRQRIAIARALLKDPPI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 167 ILADEPVSALDPV---LAQSSLDALLAQaraRGSTLIAN-LHAVELAlgrfPRIIGLREGRV 224
Cdd:cd03251 160 LILDEATSALDTEserLVQAALERLMKN---RTTFVIAHrLSTIENA----DRIVVLEDGKI 214
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
15-225 |
7.00e-19 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 82.52 E-value: 7.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSR-IGMVWQQ----P 88
Cdd:PRK10584 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILaGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKhVGFVFQSfmliP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPV-VTAVLAGRLGQWSLgrsllsllrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLI 167
Cdd:PRK10584 102 TLNALENVeLPALLRGESSRQSR-------------NGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1960140318 168 LADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELAlGRFPRIIGLREGRVQ 225
Cdd:PRK10584 169 FADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNGQLQ 225
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
23-245 |
7.59e-19 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 83.59 E-value: 7.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDpwtlSTRDRQRLRSRIGMVWQQPP----LPASQPVV 97
Cdd:TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRpTSGTARVAGYD----VVREPRKVRRSIGIVPQYASvdedLTGRENLE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 tavLAGRLgqwslgrsllsLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:TIGR01188 89 ---MMGRL-----------YGLPKDEAEERAEelLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 176 LDPVLAQSSLDaLLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVqfdcpAAAVTPAMLAELYAGD 245
Cdd:TIGR01188 155 LDPRTRRAIWD-YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI-----IAEGTPEELKRRLGKD 218
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
12-225 |
7.84e-19 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 81.92 E-value: 7.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQPPL 90
Cdd:cd03301 9 RFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIaGLEEPTSGRIYIGGRDVTDLPPKDRD-----IAMVFQNYAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 pasQPVVTAV--LAGRLgqwslgrslLSLLRPCDPAGARA-ELAR-LGLADKWQQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:cd03301 84 ---YPHMTVYdnIAFGL---------KLRKVPKDEIDERVrEVAElLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 167 ILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQ 225
Cdd:cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
16-224 |
7.90e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 83.25 E-value: 7.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 16 SRILQPFNLQIAAGECVAIIGPSGAGKTS-LLRLIGTELRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLPA-S 93
Cdd:PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTlLLHLNGIYLPQRGRVKVMGRE---VNAENEKWVRSKVGLVFQDPDDQVfS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAVLAGRLGQWSLGrsllsllrpcDPAGARAELArLGLADKWQQRCG---ELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:PRK13647 95 STVWDDVAFGPVNMGLDK----------DEVERRVEEA-LKAVRMWDFRDKppyHLSYGQKKRVAIAGVLAMDPDVIVLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 171 EPVSALDPVlAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:PRK13647 164 EPMAYLDPR-GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV 216
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-195 |
1.06e-18 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 84.74 E-value: 1.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGlrlGQSRILQPFNLQIAAGECVAIIGPSGAGKT----SLLRLIGTEL-RGEGRLTLWEQDPWTLSTRDRQRLR 78
Cdd:COG4172 14 VAFGQGG---GTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAaHPSGSILFDGQDLLGLSERELRRIR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 79 -SRIGMVWQQP-----PLpasQPV---VTAVLA--GRLGqwslgrsllsllrpcdPAGARAE----LARLGLADKwQQRC 143
Cdd:COG4172 91 gNRIAMIFQEPmtslnPL---HTIgkqIAEVLRlhRGLS----------------GAAARARalelLERVGIPDP-ERRL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 144 G----ELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQARAR 195
Cdd:COG4172 151 DayphQLSGGQRQRVMIAMALANEPDLLIADEPTTALD-VTVQAQILDLLKDLQRE 205
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
14-231 |
1.20e-18 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 82.55 E-value: 1.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPLPA 92
Cdd:TIGR02769 22 QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLlGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 S-QPVVTAVLAGRLGQWSLGRSLLSLlrpcdpAGARAELARLGL-ADKWQQRCGELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:TIGR02769 102 NpRMTVRQIIGEPLRHLTSLDESEQK------ARIAELLDMVGLrSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 171 EPVSALDPVLaQSSLDALLAQARARGST---LIAnlHAVELALGRFPRIIGLREGRVQFDCPAA 231
Cdd:TIGR02769 176 EAVSNLDMVL-QAVILELLRKLQQAFGTaylFIT--HDLRLVQSFCQRVAVMDKGQIVEECDVA 236
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-179 |
1.43e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 81.88 E-value: 1.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRL--GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG------TELRGEGRLTLWEQDPWTLstrDRQRL 77
Cdd:PRK14247 4 IEIRDLKVsfGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNrlielyPEARVSGEVYLDGQDIFKM---DVIEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 RSRIGMVWQQP-PLPASQPVVTAVLAGRLGQWSLGRSLLSllrpcdpAGARAELARLGLADKWQQR----CGELSGGQLQ 152
Cdd:PRK14247 81 RRRVQMVFQIPnPIPNLSIFENVALGLKLNRLVKSKKELQ-------ERVRWALEKAQLWDEVKDRldapAGKLSGGQQQ 153
|
170 180
....*....|....*....|....*..
gi 1960140318 153 RVGIARVLYQQPDLILADEPVSALDPV 179
Cdd:PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPE 180
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
14-225 |
2.22e-18 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 83.94 E-value: 2.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI---GTELRGEGRLTLWEQDPWtlstrDRQRLRSRIGMVWQQPPL 90
Cdd:TIGR01842 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIvgiWPPTSGSVRLDGADLKQW-----DRETFGKHIGYLPQDVEL 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 ---------------PASQPVVTAVLAgrlgqwslgrsllsllrpcdpAGARaELArLGLADKWQQRCGE----LSGGQL 151
Cdd:TIGR01842 404 fpgtvaeniarfgenADPEKIIEAAKL---------------------AGVH-ELI-LRLPDGYDTVIGPggatLSGGQR 460
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 152 QRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLaQARARGSTLIANLHAVELaLGRFPRIIGLREGRVQ 225
Cdd:TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSL-LGCVDKILVLQDGRIA 532
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-179 |
2.30e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 81.43 E-value: 2.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 5 ALDGEGLRL--GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRL------IGTELRGEGRLTLWEQDPWTLSTrDRQR 76
Cdd:PRK14267 4 AIETVNLRVyyGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTfnrlleLNEEARVEGEVRLFGRNIYSPDV-DPIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 77 LRSRIGMVWQQP-PLPASQPVVTAVLAGRLGQWSLGRSLLsllrpcdPAGARAELARLGLADKWQQRC----GELSGGQL 151
Cdd:PRK14267 83 VRREVGMVFQYPnPFPHLTIYDNVAIGVKLNGLVKSKKEL-------DERVEWALKKAALWDEVKDRLndypSNLSGGQR 155
|
170 180
....*....|....*....|....*...
gi 1960140318 152 QRVGIARVLYQQPDLILADEPVSALDPV 179
Cdd:PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPV 183
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
18-224 |
2.58e-18 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 80.73 E-value: 2.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgteLR----GEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLpAS 93
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLL---MRfydpQKGQILIDGID---IRDISRKSLRSMIGVVLQDTFL-FS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAVLAGRLgqwslGRSLLSLLRPCDPAGARAELARL--GLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:cd03254 91 GTIMENIRLGRP-----NATDEEVIEAAKEAGAHDFIMKLpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 172 PVSALDP---VLAQSSLDALLAQaraRGSTLIAN-LHAVELAlgrfPRIIGLREGRV 224
Cdd:cd03254 166 ATSNIDTeteKLIQEALEKLMKG---RTSIIIAHrLSTIKNA----DKILVLDDGKI 215
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
18-177 |
4.26e-18 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 81.06 E-value: 4.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLwEQDPWTLSTRDRqrlrsriGMVWQQPPLPASQPV 96
Cdd:COG4525 22 ALQDVSLTIESGEFVVALGASGCGKTTLLNLIaGFLAPSSGEITL-DGVPVTGPGADR-------GVVFQKDALLPWLNV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAV-----LAG-----RLgqwslgrsllsllrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:COG4525 94 LDNVafglrLRGvpkaeRR------------------ARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRF 155
|
170
....*....|.
gi 1960140318 167 ILADEPVSALD 177
Cdd:COG4525 156 LLMDEPFGALD 166
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
19-224 |
7.68e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 80.44 E-value: 7.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGE------GRLTLWEQDPWtlstrdrqRLRSRIGMVWQQPPlpa 92
Cdd:PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEagtitvGGMVLSEETVW--------DVRRQVGMVFQNPD--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAV---LAGRLGQwslgrsllsLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLI 167
Cdd:PRK13635 92 NQFVGATVqddVAFGLEN---------IGVPREEMVERVDqaLRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 168 LADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALgRFPRIIGLREGRV 224
Cdd:PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEI 218
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
18-200 |
9.58e-18 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 77.96 E-value: 9.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTelrgegrltLWeqdPWTLSTRDRQRlRSRIGMVWQQPPLPAsqpvv 97
Cdd:cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG---------LW---PWGSGRIGMPE-GEDLLFLPQRPYLPL----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 tavlaGRLgqwslgrsllsllrpcdpagaRAELARLgladkWQQrcgELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:cd03223 78 -----GTL---------------------REQLIYP-----WDD---VLSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123
|
170 180
....*....|....*....|...
gi 1960140318 178 PvlaqSSLDALLAQARARGSTLI 200
Cdd:cd03223 124 E----ESEDRLYQLLKELGITVI 142
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
17-198 |
1.31e-17 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 79.73 E-value: 1.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRL-IGTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPlPASQP 95
Cdd:PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLlVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSI-SAVNP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 --VVTAVLAGRLGQWSLGRSLLSLlrpcdpAGARAELARLGLADKWQQRC-GELSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:PRK10419 105 rkTVREIIREPLRHLLSLDKAERL------ARASEMLRAVDLDDSVLDKRpPQLSGGQLQRVCLARALAVEPKLLILDEA 178
|
170 180
....*....|....*....|....*.
gi 1960140318 173 VSALDPVLaQSSLDALLAQARARGST 198
Cdd:PRK10419 179 VSNLDLVL-QAGVIRLLKKLQQQFGT 203
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
19-224 |
1.99e-17 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 78.40 E-value: 1.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLstrDRQRLRSRIGMVWQQPPLPA----- 92
Cdd:cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLaGLYKPTSGSVLLDGTDIRQL---DPADLRRNIGYVPQDVTLFYgtlrd 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 ----SQPVVT--AVL-AGRLgqwslgrsllsllrpcdpAGARAELARL--GLADKWQQRCGELSGGQLQRVGIARVLYQQ 163
Cdd:cd03245 97 nitlGAPLADdeRILrAAEL------------------AGVTDFVNKHpnGLDLQIGERGRGLSGGQRQAVALARALLND 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 164 PDLILADEPVSALDPVLAQSSLDALlaQARARGSTLIANLHAVELaLGRFPRIIGLREGRV 224
Cdd:cd03245 159 PPILLLDEPTSAMDMNSEERLKERL--RQLLGDKTLIIITHRPSL-LDLVDRIIVMDSGRI 216
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
8-201 |
2.50e-17 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 78.08 E-value: 2.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 8 GEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEqdpwtlstrdrqrlrsrigmVWQQ 87
Cdd:COG2401 35 GVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVD--------------------VPDN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 PpLPASQPVVTAVlaGRLGqwslgrsllsllrpcDPAGARAELARLGLADK--WQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:COG2401 95 Q-FGREASLIDAI--GRKG---------------DFKDAVELLNAVGLSDAvlWLRRFKELSTGQKFRFRLALLLAERPK 156
|
170 180 190
....*....|....*....|....*....|....*.
gi 1960140318 166 LILADEPVSALDPVLAQSSLDALLAQARARGSTLIA 201
Cdd:COG2401 157 LLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVV 192
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
16-223 |
3.54e-17 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 77.12 E-value: 3.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 16 SRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR---GE----GRLTLWEQDPWTLST-----------RDRQRL 77
Cdd:cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEklsGSvsvpGSIAYVSQEPWIQNGtirenilfgkpFDEERY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 RSrigmvwqqpplpasqpVVTAvlagrlgqwslgrsllsllrpCdpaGARAELARLGLADkwQQRCGE----LSGGQLQR 153
Cdd:cd03250 98 EK----------------VIKA---------------------C---ALEPDLEILPDGD--LTEIGEkginLSGGQKQR 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 154 VGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELaLGRFPRIIGLREGR 223
Cdd:cd03250 136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPHADQIVVLDNGR 204
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
23-200 |
5.11e-17 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 78.98 E-value: 5.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPpLPASQPVVTA-- 99
Cdd:PRK15079 41 TLRLYEGETLGVVGESGCGKSTFARaIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP-LASLNPRMTIge 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 100 VLAGRLGQWSlgrsllsllrPCDPAGA-----RAELARLGLADKWQQRC-GELSGGQLQRVGIARVLYQQPDLILADEPV 173
Cdd:PRK15079 120 IIAEPLRTYH----------PKLSRQEvkdrvKAMMLKVGLLPNLINRYpHEFSGGQCQRIGIARALILEPKLIICDEPV 189
|
170 180
....*....|....*....|....*...
gi 1960140318 174 SALDpVLAQSSLDALLAQ-ARARGSTLI 200
Cdd:PRK15079 190 SALD-VSIQAQVVNLLQQlQREMGLSLI 216
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
17-206 |
5.22e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 78.15 E-value: 5.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG------TELRGEGRLTLWEQDPWTLSTrDRQRLRSRIGMVWQQPPL 90
Cdd:PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNrmneleSEVRVEGRVEFFNQNIYERRV-NLNRLRRQVSMVHPKPNL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 -PASqpVVTAVLAG-RLGQWSLGRSLLSLlrpCDPAGARAELARlGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:PRK14258 100 fPMS--VYDNVAYGvKIVGWRPKLEIDDI---VESALKDADLWD-EIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLL 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1960140318 169 ADEPVSALDPVlAQSSLDALLAQARARGSTLIA----NLHAV 206
Cdd:PRK14258 174 MDEPCFGLDPI-ASMKVESLIQSLRLRSELTMVivshNLHQV 214
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
17-226 |
7.37e-17 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 76.05 E-value: 7.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLL-----RLIGTELRGE----GRltlweqdpwtlsTRDRQRLRSRIGMVWQQ 87
Cdd:cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLnalagRRTGLGVSGEvlinGR------------PLDKRSFRKIIGYVPQD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 PPLPASQPV-----VTAVLAGrlgqwslgrsllsllrpcdpagaraelarlgladkwqqrcgeLSGGQLQRVGIARVLYQ 162
Cdd:cd03213 91 DILHPTLTVretlmFAAKLRG------------------------------------------LSGGERKRVSIALELVS 128
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 163 QPDLILADEPVSALDPVLAQSSLDAL--LAQaraRGSTLIANLHAV-ELALGRFPRIIGLREGRVQF 226
Cdd:cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLrrLAD---TGRTIICSIHQPsSEIFELFDKLLLLSQGRVIY 192
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
19-227 |
7.87e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 77.97 E-value: 7.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPP---LPAS-- 93
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDnqlFSASvy 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAVLAGRLgqwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:PRK13636 102 QDVSFGAVNLKL--------------PEDEVRKRVDnaLKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 172 PVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFD 227
Cdd:PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
3-200 |
1.34e-16 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 78.70 E-value: 1.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 3 AVALDGEGLRLGQSR-ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQD-----PwtlstrdrQ 75
Cdd:COG4178 362 ALALEDLTLRTPDGRpLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIaGLWPYGSGRIARPAGArvlflP--------Q 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 76 R-------LRSRIgmVWQQPPLPASQPVVTAVL-AGRLGQWslgrsllsllrpcdpagaraeLARLGLADKWQQRcgeLS 147
Cdd:COG4178 434 RpylplgtLREAL--LYPATAEAFSDAELREALeAVGLGHL---------------------AERLDEEADWDQV---LS 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 148 GGQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALlaQARARGSTLI 200
Cdd:COG4178 488 LGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLL--REELPGTTVI 538
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
18-224 |
1.62e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 75.99 E-value: 1.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLweqDPWTLSTRDRQRLRSRIGMVWQQPPLpASQPV 96
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIqRFYVPENGRVLV---DGHDLALADPAWLRRQVGVVLQENVL-FNRSI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAVLAGRLGQWSLGRSLLSLLrpcdpAGARAELARLGLAdkWQQRCGE----LSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:cd03252 93 RDNIALADPGMSMERVIEAAKL-----AGAHDFISELPEG--YDTIVGEqgagLSGGQRQRIAIARALIHNPRILIFDEA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 173 VSALD---PVLAQSSLDALLAqararGSTLIANLHAVElALGRFPRIIGLREGRV 224
Cdd:cd03252 166 TSALDyesEHAIMRNMHDICA-----GRTVIIIAHRLS-TVKNADRIIVMEKGRI 214
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
12-224 |
1.82e-16 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 75.48 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDpwtlSTRDRQRLRSRIGMVWQQPPL 90
Cdd:cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKpTSGRATVAGHD----VVREPREVRRRIGIVFQDLSV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 pasQPVVTA----VLAGRLgqwslgrsllsLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQP 164
Cdd:cd03265 85 ---DDELTGwenlYIHARL-----------YGVPGAERRERIDelLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 165 DLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
19-233 |
3.99e-16 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 77.21 E-value: 3.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLweqDPWTLSTRDRQRLRSRIGMVWQQPPLpasqpvv 97
Cdd:TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLlGLYQPTEGSVLL---DGVDIRQIDPADLRRNIGYVPQDPRL------- 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 tavLAGRLGQwslgRSLLSLLRPCDPAGARA-------ELARL---GLADKWQQRCGELSGGQLQRVGIARVLYQQPDLI 167
Cdd:TIGR03375 551 ---FYGTLRD----NIALGAPYADDEEILRAaelagvtEFVRRhpdGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL 623
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 168 LADEPVSALDPVLAQSSLDALlaQARARGSTLIANLHAVELaLGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:TIGR03375 624 LLDEPTSAMDNRSEERFKDRL--KRWLAGKTLVLVTHRTSL-LDLVDRIIVMDNGRIVADGPKDQV 686
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
14-227 |
4.93e-16 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 75.16 E-value: 4.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgtelrgEGRLTLWEQDPW--TLSTRDRQRL---RSRIGMVWQQP 88
Cdd:TIGR04520 13 SEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLL------NGLLLPTSGKVTvdGLDTLDEENLweiRKKVGMVFQNP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PlpaSQPVVTAVLAgrlgqwslgrsllsllrpcDPA-G------ARAE--------LARLGLADKWQQRCGELSGGQLQR 153
Cdd:TIGR04520 87 D---NQFVGATVED-------------------DVAfGlenlgvPREEmrkrvdeaLKLVGMEDFRDREPHLLSGGQKQR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 154 VGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALgRFPRIIGLREGRVQFD 227
Cdd:TIGR04520 145 VAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAV-LADRVIVMNKGKIVAE 217
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
19-243 |
4.99e-16 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 74.97 E-value: 4.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRLRSRigMVWQQPPLPA------ 92
Cdd:PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAY--LSQQQTPPFAmpvfqy 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 ---SQPVVTAVlagrlgqwslgrsllsllrpCDPAGARAELA-RLGLADKWQQRCGELSGGQLQRVGIARVLYQ-----Q 163
Cdd:PRK03695 90 ltlHQPDKTRT--------------------EAVASALNEVAeALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdiN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 164 PD--LILADEPVSALDpVLAQSSLDALLAQ-ARARGSTLIANlHAVELALGRFPRIIGLREGRVQFDCPAAAV-TPAMLA 239
Cdd:PRK03695 150 PAgqLLLLDEPMNSLD-VAQQAALDRLLSElCQQGIAVVMSS-HDLNHTLRHADRVWLLKQGKLLASGRRDEVlTPENLA 227
|
....
gi 1960140318 240 ELYA 243
Cdd:PRK03695 228 QVFG 231
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
23-177 |
5.79e-16 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 76.30 E-value: 5.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLweqDPWTL-STRDRQRL---RSRIGMVWQQPPLPASQPVV 97
Cdd:TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIaGLTRPDEGEIVL---NGRTLfDSRKGIFLppeKRRIGYVFQEARLFPHLSVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLAGRlgqwslgrsllsllRPCDPAGARAELAR----LGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPV 173
Cdd:TIGR02142 94 GNLRYGM--------------KRARPSERRISFERvielLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159
|
....
gi 1960140318 174 SALD 177
Cdd:TIGR02142 160 AALD 163
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
16-224 |
6.32e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 76.81 E-value: 6.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 16 SRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLPAsQP 95
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIE---LRELDPESWRKHLSWVGQNPQLPH-GT 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 VVTAVLAGRlgqwsLGRSLLSLLRPCDPAGARAELARL--GLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPV 173
Cdd:PRK11174 439 LRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLpqGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 174 SALDPVLAQSSLDALlaQARARGSTLIANLHAVElALGRFPRIIGLREGRV 224
Cdd:PRK11174 514 ASLDAHSEQLVMQAL--NAASRRQTTLMVTHQLE-DLAQWDQIWVMQDGQI 561
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
18-224 |
7.15e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 76.40 E-value: 7.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgteLR----GEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPL--- 90
Cdd:COG5265 373 ILKGVSFEVPAGKTVAIVGPSGAGKSTLARLL---FRfydvTSGRILIDGQD---IRDVTQASLRAAIGIVPQDTVLfnd 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 ----------P-ASQPVVTAVlagrlgqwslgrsllsllrpcdpagarAELARL-----GLADKWQQRCGE----LSGGQ 150
Cdd:COG5265 447 tiayniaygrPdASEEEVEAA---------------------------ARAAQIhdfieSLPDGYDTRVGErglkLSGGE 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 151 LQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIAN-----LHAVElalgrfprIIGLREGRV 224
Cdd:COG5265 500 KQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLVIAHrlstiVDADE--------ILVLEAGRI 570
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
12-224 |
7.65e-16 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 72.46 E-value: 7.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRsrIGMVWQqppl 90
Cdd:cd03216 9 RFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILsGLYKPDSGEILVDGKEVSFASPRDARRAG--IAMVYQ---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 pasqpvvtavlagrlgqwslgrsllsllrpcdpagaraelarlgladkwqqrcgeLSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:cd03216 83 -------------------------------------------------------LSVGERQMVEIARALARNARLLILD 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1960140318 171 EPVSALDPVLAQsSLDALLAQARARGSTLI---ANLHAV-ELAlgrfPRIIGLREGRV 224
Cdd:cd03216 108 EPTAALTPAEVE-RLFKVIRRLRAQGVAVIfisHRLDEVfEIA----DRVTVLRDGRV 160
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
6-177 |
7.71e-16 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 74.74 E-value: 7.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLwEQDPWTLSTRDRqrlrsriGMV 84
Cdd:PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIaGFVPYQHGSITL-DGKPVEGPGAER-------GVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 85 WQQPPLPASQPVVTAVLAG-RLGQWSLGRSLlsllrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQ 163
Cdd:PRK11248 76 FQNEGLLPWRNVQDNVAFGlQLAGVEKMQRL---------EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAAN 146
|
170
....*....|....
gi 1960140318 164 PDLILADEPVSALD 177
Cdd:PRK11248 147 PQLLLLDEPFGALD 160
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
19-228 |
8.25e-16 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 74.29 E-value: 8.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWtlstRDRQRLRSRIGMV--------WQQPP 89
Cdd:cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQpTSGEVRVAGLVPW----KRRKKFLRRIGVVfgqktqlwWDLPV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 LPAsqpvvTAVLAGRLGqwslgrsllsllrpCDPAGARAELAR----LGLADKWQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:cd03267 113 IDS-----FYLLAAIYD--------------LPPARFKKRLDElselLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPE 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 166 LILADEPVSALDpVLAQSSLDALLAQA-RARGSTLIA---NLHAVElALGRfpRIIGLREGRVQFDC 228
Cdd:cd03267 174 ILFLDEPTIGLD-VVAQENIRNFLKEYnRERGTTVLLtshYMKDIE-ALAR--RVLVIDKGRLLYDG 236
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
17-226 |
1.02e-15 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 73.84 E-value: 1.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG----EGRLTLWEQDpwtlstRDRQRLRSRIGMVWQQ----P 88
Cdd:cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggttSGQILFNGQP------RKPDQFQKCVAYVRQDdillP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVV-TAVLAGRlgqwslgrsllsllrPCDPAGARAE------LARLGLADKWQQRCGELSGGQLQRVGIARVLY 161
Cdd:cd03234 95 GLTVRETLTyTAILRLP---------------RKSSDAIRKKrvedvlLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 162 QQPDLILADEPVSALDPVLAQsSLDALLAQARARGSTLIANLHAVELALGR-FPRIIGLREGRVQF 226
Cdd:cd03234 160 WDPKVLILDEPTSGLDSFTAL-NLVSTLSQLARRNRIVILTIHQPRSDLFRlFDRILLLSSGEIVY 224
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
19-209 |
1.02e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 74.73 E-value: 1.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSL-LRLIGTELRGEGRLTLwEQDPWTLSTRDRQRLRSRIGMVWQQPPLPASQPVV 97
Cdd:PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLfLHFNGILKPTSGEVLI-KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLA-GRLGqwslgrsllsLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVS 174
Cdd:PRK13639 97 EEDVAfGPLN----------LGLSKEEVEKRVKeaLKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
|
170 180 190
....*....|....*....|....*....|....*
gi 1960140318 175 ALDPVLAqSSLDALLAQARARGSTLIANLHAVELA 209
Cdd:PRK13639 167 GLDPMGA-SQIMKLLYDLNKEGITIIISTHDVDLV 200
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
5-177 |
1.10e-15 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 73.59 E-value: 1.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 5 ALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTrdrQRLRSRIGM 83
Cdd:PRK10247 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISpTSGTLLFEGEDISTLKP---EIYRQQVSY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 84 VWQQPPLPASqpvvtAVLAGRLGQWSLGRSLLsllrpcDPAGARAELARLGLADK-WQQRCGELSGGQLQRVGIARVLYQ 162
Cdd:PRK10247 86 CAQTPTLFGD-----TVYDNLIFPWQIRNQQP------DPAIFLDDLERFALPDTiLTKNIAELSGGEKQRISLIRNLQF 154
|
170
....*....|....*
gi 1960140318 163 QPDLILADEPVSALD 177
Cdd:PRK10247 155 MPKVLLLDEITSALD 169
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
17-217 |
1.18e-15 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 75.99 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLigteLRG-------------------------------------EGRL 59
Cdd:TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHV----LRGmdqyeptsgriiyhvalcekcgyverpskvgepcpvcGGTL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 60 TLWEQDPWTLSTRDRQRLRSRIGMVWQQP-PLPASQPVVTAVLagrlgqwslgRSLLSLLRPCDPAGARAE--LARLGLA 136
Cdd:TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTfALYGDDTVLDNVL----------EALEEIGYEGKEAVGRAVdlIEMVQLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 137 DKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHavelalgrFPRI 216
Cdd:TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH--------WPEV 231
|
.
gi 1960140318 217 I 217
Cdd:TIGR03269 232 I 232
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
23-200 |
1.62e-15 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 74.37 E-value: 1.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTlWEQDPWTLSTRDRqrlrsrIG-MvwqqpP----LPASQPV 96
Cdd:COG4152 21 SFTVPKGEIFGLLGPNGAGKTTTIRIIlGILAPDSGEVL-WDGEPLDPEDRRR------IGyL-----PeergLYPKMKV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAVLA-GRL-GQwslgrsllsllrpcDPAGARAE----LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:COG4152 89 GEQLVYlARLkGL--------------SKAEAKRRadewLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILD 154
|
170 180 190
....*....|....*....|....*....|
gi 1960140318 171 EPVSALDPVLAQSSLDALLAQaRARGSTLI 200
Cdd:COG4152 155 EPFSGLDPVNVELLKDVIREL-AAKGTTVI 183
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
14-233 |
1.63e-15 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 73.09 E-value: 1.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQDPWTLSTRDRQRLrsriGMVWqqpplpa 92
Cdd:COG0410 14 GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKaISGLLPPRSGSIRFDGEDITGLPPHRIARL----GIGY------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 sqpvvtaVLAGR-------------LGQWSLGrsllsllrpcDPAGARAELARLG-----LADKWQQRCGELSGGQLQRV 154
Cdd:COG0410 83 -------VPEGRrifpsltveenllLGAYARR----------DRAEVRADLERVYelfprLKERRRQRAGTLSGGEQQML 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 155 GIARVLYQQPDLILADEPVSALDPVLAQSSLDAlLAQARARG-STLIA--NLHAVeLALGRfpRIIGLREGRVQFDCPAA 231
Cdd:COG0410 146 AIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEI-IRRLNREGvTILLVeqNARFA-LEIAD--RAYVLERGRIVLEGTAA 221
|
..
gi 1960140318 232 AV 233
Cdd:COG0410 222 EL 223
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
34-229 |
2.02e-15 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 74.45 E-value: 2.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 34 IIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpwtlSTRDRQRLRSrIGMVWQQ----PPLPASQPVVTAVLAGRLGQW 108
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLaGFEQPDSGSIMLDGED----VTNVPPHLRH-INMVFQSyalfPHMTVEENVAFGLKMRKVPRA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 109 SLGrsllsllrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDAL 188
Cdd:TIGR01187 76 EIK------------PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1960140318 189 LAQARARGSTLIANLHAVELALGRFPRIIGLREGR-VQFDCP 229
Cdd:TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKiAQIGTP 185
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1-204 |
2.58e-15 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 74.30 E-value: 2.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrs 79
Cdd:PRK11000 1 MASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIaGLEDITSGDLFIGEKRMNDVPPAERG---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 80 rIGMVWQQPPLPASQPVVTAVLAG-RLgqwslgrsllsllrpcdpAGA-RAELAR--------LGLADKWQQRCGELSGG 149
Cdd:PRK11000 77 -VGMVFQSYALYPHLSVAENMSFGlKL------------------AGAkKEEINQrvnqvaevLQLAHLLDRKPKALSGG 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 150 QLQRVGIARVLYQQPDLILADEPVSALDPvlaqssldALLAQARARgstlIANLH 204
Cdd:PRK11000 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDA--------ALRVQMRIE----ISRLH 180
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
13-244 |
2.78e-15 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 74.49 E-value: 2.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 13 LGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRlrsRIGMVWQQPPLP 91
Cdd:PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAInGTLTPTAGTVLVAGDDVEALSARAASR---RVASVPQDTSLS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 92 ASQPVVTAVLAGRLGQwslgRSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:PRK09536 90 FEFDVRQVVEMGRTPH----RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 172 PVSALDPVLAQSSLdALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV-TPAMLAELYAG 244
Cdd:PRK09536 166 PTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVlTADTLRAAFDA 238
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
25-182 |
6.72e-15 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 72.69 E-value: 6.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 25 QIAAGECVAIIGPSGAGKTSLLRLIG-TELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPPlpAS---QPVVTAV 100
Cdd:PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTmIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPY--GSlnpRKKVGQI 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 101 LAGRLgqwslgRSLLSLLRPCDPAGARAELARLGLADKWQQRCGEL-SGGQLQRVGIARVLYQQPDLILADEPVSALD-P 178
Cdd:PRK11308 115 LEEPL------LINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMfSGGQRQRIAIARALMLDPDVVVADEPVSALDvS 188
|
....
gi 1960140318 179 VLAQ 182
Cdd:PRK11308 189 VQAQ 192
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-223 |
7.87e-15 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 72.94 E-value: 7.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLT-LWEQDPwtlstrDRQRL- 77
Cdd:PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMIlGMTSPDAGKITvLGVPVP------ARARLa 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 RSRIGMVWQQPPLPASQPVVTAVLA-GRLgqWSLGRSLLSLLRPcdpagARAELARLglADKWQQRCGELSGGQLQRVGI 156
Cdd:PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVfGRY--FGMSTREIEAVIP-----SLLEFARL--ESKADARVSDLSGGMKRRLTL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 157 ARVLYQQPDLILADEPVSALDP---VLAQSSLDALLaqarARGSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:PRK13536 184 ARALINDPQLLILDEPTTGLDPharHLIWERLRSLL----ARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
24-227 |
1.12e-14 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 70.86 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 24 LQIAAGECVAIIGPSGAGKTSLLRLIGTELRGE-GRLTLWEQDpwtlSTRDRQRLRSRIGMVWQQ----PPLPASQPVVT 98
Cdd:cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDaGFATVDGFD----VVKEPAEARRRLGFVSDStglyDRLTARENLEY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 99 -AVLAGRLGqwslgrsllsllrpcDPAGARAE-LA-RLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:cd03266 102 fAGLYGLKG---------------DELTARLEeLAdRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 176 LDpVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFD 227
Cdd:cd03266 167 LD-VMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
14-200 |
1.24e-14 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 72.78 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDPWTLSTRDrqrLRSRIGMVWQQPPLPA 92
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPlQGEVTLDGVPVSSLDQDE---VRRRVSVCAQDAHLFD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQpVVTAVLAGRLGqwslgrsllsllrpCDPAGARAELARLGLADkWQQRCGE------------LSGGQLQRVGIARVL 160
Cdd:TIGR02868 423 TT-VRENLRLARPD--------------ATDEELWAALERVGLAD-WLRALPDgldtvlgeggarLSGGERQRLALARAL 486
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1960140318 161 YQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLI 200
Cdd:TIGR02868 487 LADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLI 526
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
19-204 |
1.45e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 71.45 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQDPwtlstrdRQRLR-SRIGMVWQQPPLPASQPV 96
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKaLMGFVRLASGKISILGQPT-------RQALQkNLVAYVPQSEEVDWSFPV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VT--AVLAGRLGQwslgRSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVS 174
Cdd:PRK15056 96 LVedVVMMGRYGH----MGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFT 171
|
170 180 190
....*....|....*....|....*....|
gi 1960140318 175 ALDpVLAQSSLDALLAQARARGSTLIANLH 204
Cdd:PRK15056 172 GVD-VKTEARIISLLRELRDEGKTMLVSTH 200
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
23-178 |
1.92e-14 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 72.06 E-value: 1.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIG-----TElrgeGRLTLWEQDPWTLSTRDRQRLR-SRIGMVWQQ----P---- 88
Cdd:COG4175 47 SFDVEEGEIFVIMGLSGSGKSTLVRCLNrliepTA----GEVLIDGEDITKLSKKELRELRrKKMSMVFQHfallPhrtv 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 ------PLPasqpvvtavLAG-----RLGQwslgrsllsllrpcdpagARAELARLGLADKWQQRCGELSGGQLQRVGIA 157
Cdd:COG4175 123 lenvafGLE---------IQGvpkaeRRER------------------AREALELVGLAGWEDSYPDELSGGMQQRVGLA 175
|
170 180
....*....|....*....|.
gi 1960140318 158 RVLYQQPDLILADEPVSALDP 178
Cdd:COG4175 176 RALATDPDILLMDEAFSALDP 196
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
12-204 |
2.43e-14 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 69.55 E-value: 2.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpWTLSTRDRQRLRSRIGMVWQQPPL 90
Cdd:cd03268 9 TYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIlGLIKPDSGEITFDGKS-YQKNIEALRRIGALIEAPGFYPNL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PA-SQPVVTAVLAGRLGQwslgrsllsllrpcdpagaRAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLI 167
Cdd:cd03268 88 TArENLRLLARLLGIRKK-------------------RIDevLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLL 148
|
170 180 190
....*....|....*....|....*....|....*..
gi 1960140318 168 LADEPVSALDPVlAQSSLDALLAQARARGSTLIANLH 204
Cdd:cd03268 149 ILDEPTNGLDPD-GIKELRELILSLRDQGITVLISSH 184
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-182 |
2.68e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 70.51 E-value: 2.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 3 AVALDGEGLRLG--QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG------TELRGEGRLTLWEQDpwTLSTRDR 74
Cdd:PRK14271 19 APAMAAVNLTLGfaGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNrmndkvSGYRYSGDVLLGGRS--IFNYRDV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 75 QRLRSRIGMVWQQP-PLPASqpVVTAVLAGRLGQWSLGRSLLSLLrpcdpagARAELARLGLADKWQQRCGE----LSGG 149
Cdd:PRK14271 97 LEFRRRVGMLFQRPnPFPMS--IMDNVLAGVRAHKLVPRKEFRGV-------AQARLTEVGLWDAVKDRLSDspfrLSGG 167
|
170 180 190
....*....|....*....|....*....|...
gi 1960140318 150 QLQRVGIARVLYQQPDLILADEPVSALDPVLAQ 182
Cdd:PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-223 |
3.39e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 70.60 E-value: 3.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAVALDGEGLR--LGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQdpwTLSTRDRQRl 77
Cdd:PRK13537 3 MSVAPIDFRNVEkrYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRmLLGLTHPDAGSISLCGE---PVPSRARHA- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 RSRIGMVWQQPPLPASQPVVTAVLAgrLGQWSLGRSllsllrpcdpAGARA------ELARLglADKWQQRCGELSGGQL 151
Cdd:PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLV--FGRYFGLSA----------AAARAlvppllEFAKL--ENKADAKVGELSGGMK 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 152 QRVGIARVLYQQPDLILADEPVSALDPV---LAQSSLDALLaqarARGSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:PRK13537 145 RRLTLARALVNDPDVLVLDEPTTGLDPQarhLMWERLRSLL----ARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
6-224 |
4.11e-14 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 69.49 E-value: 4.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGL--RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRsrIG 82
Cdd:cd03218 1 LRAENLskRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIvGLVKPDSGKILLDGQDITKLPMHKRARLG--IG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 83 MVWQQPPLPASQPV---VTAVLAGRLgqwslgrsllsllrpcDPAGARAE-----LARLGLADKWQQRCGELSGGQLQRV 154
Cdd:cd03218 79 YLPQEASIFRKLTVeenILAVLEIRG----------------LSKKEREEkleelLEEFHITHLRKSKASSLSGGERRRV 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 155 GIARVLYQQPDLILADEPVSALDPvLAQSSLDALLAQARARG-STLIANlHAVELALGRFPRIIGLREGRV 224
Cdd:cd03218 143 EIARALATNPKFLLLDEPFAGVDP-IAVQDIQKIIKILKDRGiGVLITD-HNVRETLSITDRAYIIYEGKV 211
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
23-224 |
4.31e-14 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 69.29 E-value: 4.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGE-GRLTLWEQDPWTLSTRDRqrlrsRIGMVWQQPPLPASQPVVTAVL 101
Cdd:cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDsGKILLNGKDITNLPPEKR-----DISYVPQNYALFPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 102 AGrlgqwslgRSLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLA 181
Cdd:cd03299 94 YG--------LKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALD-VRT 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1960140318 182 QSSLDALLAQARAR-GSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03299 165 KEKLREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKL 208
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
24-204 |
4.75e-14 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 68.67 E-value: 4.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 24 LQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPwtlstRDRQRLRSRIGMVWQqpplpASQPVVTAVLAG 103
Cdd:cd03231 21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGP-----LDFQRDSIARGLLYL-----GHAPGIKTTLSV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 104 R--LGQWSLGrsllsllrpCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLA 181
Cdd:cd03231 91 LenLRFWHAD---------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD-KAG 160
|
170 180
....*....|....*....|...
gi 1960140318 182 QSSLDALLAQARARGSTLIANLH 204
Cdd:cd03231 161 VARFAEAMAGHCARGGMVVLTTH 183
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
15-225 |
4.95e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 70.05 E-value: 4.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDpWTLSTRDRQ--RLRSRIGMVWQqppLP 91
Cdd:PRK13634 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQpTSGTVTIGERV-ITAGKKNKKlkPLRKKVGIVFQ---FP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 92 ASQPVVTAVLAG------RLGqwslgrsllsllRPCDPAGARAE--LARLGLADKWQQRCG-ELSGGQLQRVGIARVLYQ 162
Cdd:PRK13634 95 EHQLFEETVEKDicfgpmNFG------------VSEEDAKQKARemIELVGLPEELLARSPfELSGGQMRRVAIAGVLAM 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 163 QPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQ 225
Cdd:PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
14-204 |
5.59e-14 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 68.54 E-value: 5.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMvwqqppLPAS 93
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGH------LPGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAvlAGRLGQWSLGrsllsllrpCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:TIGR01189 85 KPELSA--LENLHFWAAI---------HGGAQRTIEdaLAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDE 153
|
170 180 190
....*....|....*....|....*....|...
gi 1960140318 172 PVSALDPVlAQSSLDALLAQARARGSTLIANLH 204
Cdd:TIGR01189 154 PTTALDKA-GVALLAGLLRAHLARGGIVLLTTH 185
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
23-241 |
6.09e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 70.83 E-value: 6.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLtLWEQDPWTL-STRDRQRLRsrIGMVWQQPPLPASQPVVTAV 100
Cdd:COG3845 25 SLTVRPGEIHALLGENGAGKSTLMKiLYGLYQPDSGEI-LIDGKPVRIrSPRDAIALG--IGMVHQHFMLVPNLTVAENI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 101 LAGRLGQWSLGRsllsllrpcDPAGARAELARL----GLADKWQQRCGELSGGQLQRVGIARVLYQQPD-LILaDEPVSA 175
Cdd:COG3845 102 VLGLEPTKGGRL---------DRKAARARIRELseryGLDVDPDAKVEDLSVGEQQRVEILKALYRGARiLIL-DEPTAV 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 176 LDPVLAQsSLDALLAQARARGSTLI---ANLHAV-ELAlgrfPRIIGLREGRVQFDCPAAAVTPAMLAEL 241
Cdd:COG3845 172 LTPQEAD-ELFEILRRLAAEGKSIIfitHKLREVmAIA----DRVTVLRRGKVVGTVDTAETSEEELAEL 236
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
19-222 |
7.61e-14 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 68.65 E-value: 7.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLwEQDPWTLSTRDRQrlrsrigMVWQQ----PPLPAS 93
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLIsGLAQPTSGGVIL-EGKQITEPGPDRM-------VVFQNysllPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAVLAGRlgqwslgrslLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPV 173
Cdd:TIGR01184 73 ENIALAVDRVL----------PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1960140318 174 SALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREG 222
Cdd:TIGR01184 143 GALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
15-178 |
1.31e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 68.62 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLS-TRDRQRLRSRIGMVWQqppLPA 92
Cdd:PRK13649 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLnGLHVPTQGSVRVDDTLITSTSkNKDIKQIRKKVGLVFQ---FPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVL----------------AGRLgqwslgrsllsllrpcdpagARAELARLGLADKWQQRCG-ELSGGQLQRVG 155
Cdd:PRK13649 96 SQLFEETVLkdvafgpqnfgvsqeeAEAL--------------------AREKLALVGISESLFEKNPfELSGGQMRRVA 155
|
170 180
....*....|....*....|...
gi 1960140318 156 IARVLYQQPDLILADEPVSALDP 178
Cdd:PRK13649 156 IAGILAMEPKILVLDEPTAGLDP 178
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
16-224 |
1.89e-13 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 67.50 E-value: 1.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 16 SRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPwtLSTRDRQRLRSRIGMVWQQPPLPASQp 95
Cdd:cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP--ISQYEHKYLHSKVSLVGQEPVLFARS- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 vVTAVLAGRLGQWSLGRSLLSLLrpcdpaGARAELARLGLADKWQQRCGE----LSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:cd03248 104 -LQDNIAYGLQSCSFECVKEAAQ------KAHAHSFISELASGYDTEVGEkgsqLSGGQKQRVAIARALIRNPQVLILDE 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 172 PVSALDPVLAQSSLDALLAQARARGSTLIAN-LHAVELAlgrfPRIIGLREGRV 224
Cdd:cd03248 177 ATSALDAESEQQVQQALYDWPERRTVLVIAHrLSTVERA----DQILVLDGGRI 226
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
4-179 |
2.30e-13 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 67.87 E-value: 2.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDpwTLSTRDRQRL---RSR 80
Cdd:PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE--NIPAMSRSRLytvRKR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 IGMVWQQPPLPASQPVVTAVlAGRLGQwslgrsLLSLLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVL 160
Cdd:PRK11831 86 MSMLFQSGALFTDMNVFDNV-AYPLRE------HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158
|
170
....*....|....*....
gi 1960140318 161 YQQPDLILADEPVSALDPV 179
Cdd:PRK11831 159 ALEPDLIMFDEPFVGQDPI 177
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
12-204 |
2.92e-13 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 67.04 E-value: 2.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPWTlstrdRQRLRSrIGMVWQQPP-- 89
Cdd:TIGR03740 9 RFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT-----RKDLHK-IGSLIESPPly 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 --LPASQ--PVVTAVLAgrlgqwslgrsllsllrpCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:TIGR03740 83 enLTAREnlKVHTTLLG------------------LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144
|
170 180 190
....*....|....*....|....*....|....*....
gi 1960140318 166 LILADEPVSALDPVLAQsSLDALLAQARARGSTLIANLH 204
Cdd:TIGR03740 145 LLILDEPTNGLDPIGIQ-ELRELIRSFPEQGITVILSSH 182
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
5-224 |
3.09e-13 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 67.51 E-value: 3.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 5 ALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGT-ELRGEGRLTLWEQdpwTLSTRDRQRLRSRIGM 83
Cdd:PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRhQPPSEGEILLDAQ---PLESWSSKAFARKVAY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 84 VWQQPPLPASQPVVTAVLAGR------LGQWSLGrsllsllrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIA 157
Cdd:PRK10575 90 LPQQLPAAEGMTVRELVAIGRypwhgaLGRFGAA----------DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1960140318 158 RVLYQQPDLILADEPVSALDpVLAQSSLDALLAQ-ARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:PRK10575 160 MLVAQDSRCLLLDEPTSALD-IAHQVDVLALVHRlSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-227 |
3.29e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 67.42 E-value: 3.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLrsrIGMVWQQPPLPasqp 95
Cdd:COG1101 20 RALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIaGSLPPDSGSILIDGKDVTKLPEYKRAKY---IGRVFQDPMMG---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 vvTA---------VLAGRLGQWSLGRSLLSLLrpcDPAGARAELARL--GLADKWQQRCGELSGGQLQRVGIARVLYQQP 164
Cdd:COG1101 93 --TApsmtieenlALAYRRGKRRGLRRGLTKK---RRELFRELLATLglGLENRLDTKVGLLSGGQRQALSLLMATLTKP 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 165 DLILADEPVSALDPVLAQSSLDalLAQARARGSTLIA-----NL-HAveLALGRfpRIIGLREGRVQFD 227
Cdd:COG1101 168 KLLLLDEHTAALDPKTAALVLE--LTEKIVEENNLTTlmvthNMeQA--LDYGN--RLIMMHEGRIILD 230
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
18-225 |
4.12e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 68.60 E-value: 4.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLpASQPV 96
Cdd:TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQpTGGQVLLDGVP---LVQYDHHYLHRQVALVGQEPVL-FSGSV 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAVLAGrlgqwslgrsllSLLRPCDPAGARAELAR-----LGLADKWQQRCGE----LSGGQLQRVGIARVLYQQPDLI 167
Cdd:TIGR00958 572 RENIAYG------------LTDTPDEEIMAAAKAANahdfiMEFPNGYDTEVGEkgsqLSGGQKQRIAIARALVRKPRVL 639
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1960140318 168 LADEPVSALDpvlAQSslDALLAQARARGS---TLIAN-LHAVELALgrfpRIIGLREGRVQ 225
Cdd:TIGR00958 640 ILDEATSALD---AEC--EQLLQESRSRASrtvLLIAHrLSTVERAD----QILVLKKGSVV 692
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-183 |
4.44e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 66.99 E-value: 4.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 11 LRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG-------TELRGEGRLTLWEQDPWTLstrDRQRLRSRIGM 83
Cdd:PRK14246 18 LYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNrlieiydSKIKVDGKVLYFGKDIFQI---DAIKLRKEVGM 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 84 VWQQP-PLPASQPVVTAVLAGRLGQWSLGRSLLSLLRPCdpagaraeLARLGL----ADKWQQRCGELSGGQLQRVGIAR 158
Cdd:PRK14246 95 VFQQPnPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEEC--------LRKVGLwkevYDRLNSPASQLSGGQQQRLTIAR 166
|
170 180
....*....|....*....|....*
gi 1960140318 159 VLYQQPDLILADEPVSALDPVLAQS 183
Cdd:PRK14246 167 ALALKPKVLLMDEPTSMIDIVNSQA 191
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
14-195 |
5.31e-13 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 65.99 E-value: 5.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDpwtlSTRDRQRLRSRIGMVWQQPPLPa 92
Cdd:cd03263 13 GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRpTSGTAYINGYS----IRTDRKAARQSLGYCPQFDALF- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 sqPVVTA----VLAGRL-GqwslgrsllsllRPCDPAGARAELAR--LGLADKWQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:cd03263 88 --DELTVrehlRFYARLkG------------LPKSEIKEEVELLLrvLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153
|
170 180 190
....*....|....*....|....*....|.
gi 1960140318 166 LILADEPVSALDPVlAQSSL-DALLAQARAR 195
Cdd:cd03263 154 VLLLDEPTSGLDPA-SRRAIwDLILEVRKGR 183
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
14-239 |
5.84e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 67.81 E-value: 5.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTS----LLRLIgtelRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQPp 89
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI----NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP- 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 lpasqpvvTAVLAGRLGQWSLGRSLLSLLRPCDPAGARAE-----LARLGLADKWQQRC-GELSGGQLQRVGIARVLYQQ 163
Cdd:PRK15134 372 --------NSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQqviavMEEVGLDPETRHRYpAEFSGGQRQRIAIARALILK 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 164 PDLILADEPVSALDPVLaQSSLDALLA--QARARGSTLIANlHAVELALGRFPRIIGLREGRV--QFDC------PAAAV 233
Cdd:PRK15134 444 PSLIILDEPTSSLDKTV-QAQILALLKslQQKHQLAYLFIS-HDLHVVRALCHQVIVLRQGEVveQGDCervfaaPQQEY 521
|
....*.
gi 1960140318 234 TPAMLA 239
Cdd:PRK15134 522 TRQLLA 527
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
19-224 |
5.99e-13 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 67.82 E-value: 5.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGT-ELRGEGRLTLWEQDPWTLSTRDrqrLRSRIGMVWQQPPLpASQPVV 97
Cdd:TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRfYEPDSGQILLDGHDLADYTLAS---LRRQVALVSQDVVL-FNDTIA 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLAGRLGQWSLGRSLLsllrpcdpAGARAELARL--GLADKWQQRCGE----LSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:TIGR02203 424 NNIAYGRTEQADRAEIER--------ALAAAYAQDFvdKLPLGLDTPIGEngvlLSGGQRQRLAIARALLKDAPILILDE 495
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 172 PVSALD---PVLAQSSLDALLaqaRARGSTLIAN-LHAVELAlgrfPRIIGLREGRV 224
Cdd:TIGR02203 496 ATSALDnesERLVQAALERLM---QGRTTLVIAHrLSTIEKA----DRIVVMDDGRI 545
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
34-224 |
8.07e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 66.80 E-value: 8.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 34 IIGPSGAGKTSLLrligTELRG---EGRLTLWEQD---------------PWTLSTRDRQRLRSRIGMVWQQPPLPASQP 95
Cdd:PRK13631 57 IIGNSGSGKSTLV----THFNGlikSKYGTIQVGDiyigdkknnhelitnPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 VVTA-VLAG--RLGQwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCG-ELSGGQLQRVGIARVLYQQPDLILA 169
Cdd:PRK13631 133 TIEKdIMFGpvALGV------------KKSEAKKLAKfyLNKMGLDDSYLERSPfGLSGGQKRRVAIAGILAIQPEILIF 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 170 DEPVSALDPVLAQSSLDaLLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:PRK13631 201 DEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
6-224 |
9.24e-13 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 66.98 E-value: 9.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRLGqsriLQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRD-RQRLRSRIGM 83
Cdd:PRK10070 35 LEKTGLSLG----VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEpTRGQVLIDGVDIAKISDAElREVRRKKIAM 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 84 VWQQPPLpasQPVVTAVLAGRLGQWSLGRsllsllrpcdPAGARAE-----LARLGLADKWQQRCGELSGGQLQRVGIAR 158
Cdd:PRK10070 111 VFQSFAL---MPHMTVLDNTAFGMELAGI----------NAEERREkaldaLRQVGLENYAHSYPDELSGGMRQRVGLAR 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 159 VLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:PRK10070 178 ALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
16-207 |
9.62e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 66.30 E-value: 9.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 16 SRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRgEGRLTLWEQDPWTLSTRDRQRL---RSRIGMVWQQPPLPA 92
Cdd:PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEIkpvRKKVGVVFQFPESQL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAGRLGQWSLGRSLLSLLrpcdpagARAELARLGLADK-WQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:PRK13643 98 FEETVLKDVAFGPQNFGIPKEKAEKI-------AAEKLEMVGLADEfWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE 170
|
170 180 190
....*....|....*....|....*....|....*.
gi 1960140318 172 PVSALDPVlAQSSLDALLAQARARGSTLIANLHAVE 207
Cdd:PRK13643 171 PTAGLDPK-ARIEMMQLFESIHQSGQTVVLVTHLMD 205
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
11-177 |
1.09e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 63.62 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 11 LRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGtelrgeGRLTLWEQDPWTLSTrdrqrlrSRIGMVWQqppl 90
Cdd:cd03221 8 KTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIA------GELEPDEGIVTWGST-------VKIGYFEQ---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 pasqpvvtavlagrlgqwslgrsllsllrpcdpagaraelarlgladkwqqrcgeLSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:cd03221 71 -------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLD 95
|
....*..
gi 1960140318 171 EPVSALD 177
Cdd:cd03221 96 EPTNHLD 102
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
12-183 |
1.43e-12 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 66.28 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQPPL 90
Cdd:PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVaGLEKPTEGQIFIDGEDVTHRSIQQRD-----ICMVFQSYAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PASQPVVTAVLAG--RLGQwslgrSLLSLLRPCDPAGARAELArlGLADKWqqrCGELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:PRK11432 90 FPHMSLGENVGYGlkMLGV-----PKEERKQRVKEALELVDLA--GFEDRY---VDQISGGQQQRVALARALILKPKVLL 159
|
170
....*....|....*
gi 1960140318 169 ADEPVSALDPVLAQS 183
Cdd:PRK11432 160 FDEPLSNLDANLRRS 174
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
23-224 |
3.10e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 64.72 E-value: 3.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLR-----LIGTE--LRGEGRLTLWEQDPWTLstrdrqrlRSRIGMVWQQPPlpaSQP 95
Cdd:PRK13633 30 NLEVKKGEFLVILGRNGSGKSTIAKhmnalLIPSEgkVYVDGLDTSDEENLWDI--------RNKAGMVFQNPD---NQI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 VVTAVLAG------RLGqwslgrsllsllRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLI 167
Cdd:PRK13633 99 VATIVEEDvafgpeNLG------------IPPEEIRERVDesLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 168 LADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALgRFPRIIGLREGRV 224
Cdd:PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV-EADRIIVMDSGKV 222
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
26-224 |
3.21e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 64.77 E-value: 3.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 26 IAAGECVAIIGPSGAGKTSLLRL-IGTELRGEGRLtLWEQDPwtLSTRDRQRLRSRIGMVWQQPplpASQPVvtavlaGR 104
Cdd:PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLmIGIEKVKSGEI-FYNNQA--ITDDNFEKLRKHIGIVFQNP---DNQFV------GS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 105 LGQWSLGRSLLSLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVlAQ 182
Cdd:PRK13648 100 IVKYDVAFGLENHAVPYDEMHRRVSeaLKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-AR 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1960140318 183 SSLDALLAQARA-RGSTLIANLHAVELALGRfPRIIGLREGRV 224
Cdd:PRK13648 179 QNLLDLVRKVKSeHNITIISITHDLSEAMEA-DHVIVMNKGTV 220
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
23-180 |
4.20e-12 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 65.24 E-value: 4.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQ----PPLPASQPVV 97
Cdd:PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLaGFEQPTAGQIMLDGVDLSHVPPYQRP-----INMMFQSyalfPHMTVEQNIA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLAGRLgqwslgrsllsllrPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:PRK11607 114 FGLKQDKL--------------PKAEIASRVNemLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179
|
....*
gi 1960140318 176 LDPVL 180
Cdd:PRK11607 180 LDKKL 184
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-188 |
6.00e-12 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 64.70 E-value: 6.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRL--GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEqdpwTLstrdrqrlrsRIG 82
Cdd:COG0488 316 LELEGLSKsyGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLaGELEPDSGTVKLGE----TV----------KIG 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 83 MVWQ-QPPLPASQPVVTAVLAGRLGQwslgrsllsllrpcDPAGARAELARLGLA-DKWQQRCGELSGGQLQRVGIARVL 160
Cdd:COG0488 382 YFDQhQEELDPDKTVLDELRDGAPGG--------------TEQEVRGYLGRFLFSgDDAFKPVGVLSGGEKARLALAKLL 447
|
170 180
....*....|....*....|....*...
gi 1960140318 161 YQQPDLILADEPVSALDPVlaqsSLDAL 188
Cdd:COG0488 448 LSPPNVLLLDEPTNHLDIE----TLEAL 471
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
23-227 |
6.59e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 63.95 E-value: 6.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTS--------LLRLIGT--------ELRGEGRLTLWEQDPWTLS-TRDRQ-----RLRSR 80
Cdd:PRK13651 27 SVEINQGEFIAIIGQTGSGKTTfiehlnalLLPDTGTiewifkdeKNKKKTKEKEKVLEKLVIQkTRFKKikkikEIRRR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 IGMVWQqppLPASQ-------------PVVTAVlagrlgqwslgrsllsllrpcDPAGARaELAR-----LGLADKWQQR 142
Cdd:PRK13651 107 VGVVFQ---FAEYQlfeqtiekdiifgPVSMGV---------------------SKEEAK-KRAAkyielVGLDESYLQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 143 CG-ELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDaLLAQARARGSTLIANLHAVELALGRFPRIIGLRE 221
Cdd:PRK13651 162 SPfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240
|
....*.
gi 1960140318 222 GRVQFD 227
Cdd:PRK13651 241 GKIIKD 246
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
15-204 |
1.20e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 63.31 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTL--WEQDPWTlSTRDRQRLRSRIGMVWQqppLP 91
Cdd:PRK13641 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKpSSGTITIagYHITPET-GNKNLKKLRKKVSLVFQ---FP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 92 ASQ----PVVTAVLAGRLGqwslgrsllsllrpcdpAGARAELARLGlADKWQQRCG-----------ELSGGQLQRVGI 156
Cdd:PRK13641 95 EAQlfenTVLKDVEFGPKN-----------------FGFSEDEAKEK-ALKWLKKVGlsedliskspfELSGGQMRRVAI 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1960140318 157 ARVLYQQPDLILADEPVSALDPvLAQSSLDALLAQARARGSTLIANLH 204
Cdd:PRK13641 157 AGVMAYEPEILCLDEPAAGLDP-EGRKEMMQLFKDYQKAGHTVILVTH 203
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
29-226 |
1.33e-11 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 63.91 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 29 GECVAIIGPSGAGKTSLLRLIG----TELRGEGRLTLWEQdpwtlsTRDRQRLRSRIGMVWQQ----PPLPA-SQPVVTA 99
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNALAfrspKGVKGSGSVLLNGM------PIDAKEMRAISAYVQQDdlfiPTLTVrEHLMFQA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 100 VLagRLGQwslgrsllslLRPCDPAGARAE--LARLGLADKWQQRCGE------LSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:TIGR00955 125 HL--RMPR----------RVTKKEKRERVDevLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDE 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 172 PVSALDPVLAQSSLDAL--LAQaraRGSTLIANLH--AVELaLGRFPRIIGLREGRVQF 226
Cdd:TIGR00955 193 PTSGLDSFMAYSVVQVLkgLAQ---KGKTIICTIHqpSSEL-FELFDKIILMAEGRVAY 247
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
15-193 |
1.39e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 63.96 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKT----SLLRLIGT--------ELRGEGRltlweqdpwTLSTRDRQRLR---- 78
Cdd:PRK15134 21 VRTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSppvvypsgDIRFHGE---------SLLHASEQTLRgvrg 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 79 SRIGMVWQQP-----PLPASQPVVTAVLAGRLGQWSLGrsllsllrpcdpagARAE----LARLG-------LADKWQQr 142
Cdd:PRK15134 92 NKIAMIFQEPmvslnPLHTLEKQLYEVLSLHRGMRREA--------------ARGEilncLDRVGirqaakrLTDYPHQ- 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 143 cgeLSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQAR 193
Cdd:PRK15134 157 ---LSGGERQRVMIAMALLTRPELLIADEPTTALD-VSVQAQILQLLRELQ 203
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
18-229 |
1.58e-11 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 62.13 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTS----LLRLIgtELRGeGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLpas 93
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSlllaLFRLV--ELSS-GSILIDGVD---ISKIGLHDLRSRISIIPQDPVL--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 qpvVTAVLAGRLgqwslgrsllsllrpcDPAGARAE------LARLGLADKWQQ----------RCGE-LSGGQLQRVGI 156
Cdd:cd03244 90 ---FSGTIRSNL----------------DPFGEYSDeelwqaLERVGLKEFVESlpggldtvveEGGEnLSVGQRQLLCL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 157 ARVLYQQPDLILADEPVSALDPvlaqsSLDALLAQA---RARGSTLIANLHAVELALGrFPRIIGLREGRV-QFDCP 229
Cdd:cd03244 151 ARALLRKSKILVLDEATASVDP-----ETDALIQKTireAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVvEFDSP 221
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-224 |
1.74e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 62.72 E-value: 1.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGM 83
Cdd:PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 84 VWQQPPLPASQPVVTAVLAGRLGQWSLgrsllsllrpcdpagARAELAR-----LGLADKW---QQRCGELSGGQLQRVG 155
Cdd:PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNLGV---------------PEAEITRrvdeaLTLVDAQhfrHQPIQCLSHGQKKRVA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 156 IARVLYQQPDLILADEPVSALDPVlAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:PRK13638 147 IAGALVLQARYLLLDEPTAGLDPA-GRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
17-242 |
1.93e-11 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 62.54 E-value: 1.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG---------EGRLTLweqDPWTLSTRDRQRLRSRIGMVWQ- 86
Cdd:PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGggaprgarvTGDVTL---NGEPLAAIDAPRLARLRAVLPQa 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 87 -QPPLPASqpVVTAVLAGRLGQWSLGRSLLSLlrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQ--- 162
Cdd:PRK13547 92 aQPAFAFS--AREIVLLGRYPHARRAGALTHR----DGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQlwp 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 163 ------QPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQFD-CPAAAVTP 235
Cdd:PRK13547 166 phdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHgAPADVLTP 245
|
....*..
gi 1960140318 236 AMLAELY 242
Cdd:PRK13547 246 AHIARCY 252
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
19-227 |
2.49e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 62.31 E-value: 2.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSL-LRLIGTELRGEGRLTLWEQDPWTLSTRdrQRLRSRIGMVWQQPPLPASQPVV 97
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLaLHLNGLLRPQKGKVLVSGIDTGDFSKL--QGIRKLVGIVFQNPETQFVGRTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLAgrLGQWSLGRSLLSLLRPCDPAgaraeLARLGLaDKWQQRCGE-LSGGQLQRVGIARVLYQQPDLILADEPVSAL 176
Cdd:PRK13644 96 EEDLA--FGPENLCLPPIEIRKRVDRA-----LAEIGL-EKYRHRSPKtLSGGQGQCVALAGILTMEPECLIFDEVTSML 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 177 DPVLAQSSLDAlLAQARARGSTLIANLHAVElALGRFPRIIGLREGRVQFD 227
Cdd:PRK13644 168 DPDSGIAVLER-IKKLHEKGKTIVYITHNLE-ELHDADRIIVMDRGKIVLE 216
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
14-172 |
2.79e-11 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 61.39 E-value: 2.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQDPWTLSTRdrQRLRSRIGMVWQQ----P 88
Cdd:TIGR03410 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKtLMGLLPVKSGSIRLDGEDITKLPPH--ERARAGIAYVPQGreifP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVVTaVLAGRlgqwslgrsllsllrpcdPAGARAELARL-----GLADKWQQRCGELSGGQLQRVGIARVLYQQ 163
Cdd:TIGR03410 89 RLTVEENLLT-GLAAL------------------PRRSRKIPDEIyelfpVLKEMLGRRGGDLSGGQQQQLAIARALVTR 149
|
....*....
gi 1960140318 164 PDLILADEP 172
Cdd:TIGR03410 150 PKLLLLDEP 158
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
12-177 |
3.88e-11 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 60.62 E-value: 3.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI----GTELRgEGRLTLWEQDPWTLSTRDRQRLrsRIGMVWQQ 87
Cdd:cd03217 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTImghpKYEVT-EGEILFKGEDITDLPPEERARL--GIFLAFQY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 PPlpaSQPVVTAvlagrlgqwslgrsllsllrpcdpagarAELARlgladkwqqRCGE-LSGGQLQRVGIARVLYQQPDL 166
Cdd:cd03217 86 PP---EIPGVKN----------------------------ADFLR---------YVNEgFSGGEKKRNEILQLLLLEPDL 125
|
170
....*....|.
gi 1960140318 167 ILADEPVSALD 177
Cdd:cd03217 126 AILDEPDSGLD 136
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-224 |
6.60e-11 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 59.37 E-value: 6.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 3 AVALDGEGLRLGQSriLQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRL---- 77
Cdd:cd03215 2 EPVLEVRGLSVKGA--VRDVSFEVRAGEIVGIAGLVGNGQTELAEALfGLRPPASGEITLDGKPVTRRSPRDAIRAgiay 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 ----RSRIGMVwqqpplpASQPVVTAVLAGRLgqwslgrsllsllrpcdpagaraelarlgladkwqqrcgeLSGGQLQR 153
Cdd:cd03215 80 vpedRKREGLV-------LDLSVAENIALSSL----------------------------------------LSGGNQQK 112
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 154 VGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQARARGSTLIanLHAVELA--LGRFPRIIGLREGRV 224
Cdd:cd03215 113 VVLARWLARDPRVLILDEPTRGVD-VGAKAEIYRLIRELADAGKAVL--LISSELDelLGLCDRILVMYEGRI 182
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
19-247 |
7.77e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 60.88 E-value: 7.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLweqDPWTLSTRDRQRLRSRIGMVWQQPPLPASQPVV 97
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIdGLFEEFEGKVKI---DGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLAgrLGQWSLGRSLLSLLRPCDPAgaraeLARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PRK13642 100 EDDVA--FGMENQGIPREEMIKRVDEA-----LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 178 PVlAQSSLDALLAQARARGS-TLIANLHAVELALGRfPRIIGLREGRVqfdcpaaaVTPAMLAELYAGDDE 247
Cdd:PRK13642 173 PT-GRQEIMRVIHEIKEKYQlTVLSITHDLDEAASS-DRILVMKAGEI--------IKEAAPSELFATSED 233
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
14-224 |
7.80e-11 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 61.76 E-value: 7.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTE-LRGEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPL-- 90
Cdd:PRK11160 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAwDPQQGEILLNGQP---IADYSEAALRQAISVVSQRVHLfs 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 ------------PASQPVVTAVLAgrlgqwslgrsllsllrpcdpagaRAELARL-----GLaDKWqqrCGE----LSGG 149
Cdd:PRK11160 428 atlrdnlllaapNASDEALIEVLQ------------------------QVGLEKLleddkGL-NAW---LGEggrqLSGG 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 150 QLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQarARGSTLIANLHAVeLALGRFPRIIGLREGRV 224
Cdd:PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH--AQNKTVLMITHRL-TGLEQFDRICVMDNGQI 551
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
26-213 |
8.91e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 59.50 E-value: 8.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 26 IAAGECVAIIGPSGAGKTSLLRLIGTELRGE-GRLTLWEQDPwtlstrDRQRLRSRIGMVWQQPPLPASQPVVTAVL--A 102
Cdd:PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPPAaGTIKLDGGDI------DDPDVAEACHYLGHRNAMKPALTVAENLEfwA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 103 GRLGQwslgrsllsllrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQ 182
Cdd:PRK13539 99 AFLGG--------------EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD-AAAV 163
|
170 180 190
....*....|....*....|....*....|....*...
gi 1960140318 183 SSLDALLAQARARGSTLIANLH-------AVELALGRF 213
Cdd:PRK13539 164 ALFAELIRAHLAQGGIVIAATHiplglpgARELDLGPF 201
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
4-193 |
1.22e-10 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 59.74 E-value: 1.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgtelrgegrLTLWEQDPWTLstrdRQRLRSRIGM 83
Cdd:PRK09544 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVV---------LGLVAPDEGVI----KRNGKLRIGY 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 84 VWQQPPLPASQPV-VTAVLAGRLGQWSLGRSllsllrpcdPAGARAELARLgladkWQQRCGELSGGQLQRVGIARVLYQ 162
Cdd:PRK09544 72 VPQKLYLDTTLPLtVNRFLRLRPGTKKEDIL---------PALKRVQAGHL-----IDAPMQKLSGGETQRVLLARALLN 137
|
170 180 190
....*....|....*....|....*....|.
gi 1960140318 163 QPDLILADEPVSALDpVLAQSSLDALLAQAR 193
Cdd:PRK09544 138 RPQLLVLDEPTQGVD-VNGQVALYDLIDQLR 167
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
14-199 |
1.68e-10 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 59.51 E-value: 1.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLWEQDPWTLSTRdrQRLRSRIGMVWQQPPLPA 92
Cdd:PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAtSGRIVFDGKDITDWQTA--KIMREAVAIVPEGRRVFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAGRL----GQWSLGRSLLSLLRPcdpagaraelarlGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:PRK11614 94 RMTVEENLAMGGFfaerDQFQERIKWVYELFP-------------RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
|
170 180 190
....*....|....*....|....*....|.
gi 1960140318 169 ADEPVSALDPVLAQSSLDAlLAQARARGSTL 199
Cdd:PRK11614 161 LDEPSLGLAPIIIQQIFDT-IEQLREQGMTI 190
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
23-200 |
2.13e-10 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 58.66 E-value: 2.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLtLWEQDPwtlSTRDRQRLRSR---IGMvwqqppLPASQPVVT 98
Cdd:PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILaGLARPDAGEV-LWQGEP---IRRQRDEYHQDllyLGH------QPGIKTELT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 99 AV----LAGRLGQwslgrsllsllrPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVS 174
Cdd:PRK13538 91 ALenlrFYQRLHG------------PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158
|
170 180
....*....|....*....|....*.
gi 1960140318 175 ALDpVLAQSSLDALLAQARARGSTLI 200
Cdd:PRK13538 159 AID-KQGVARLEALLAQHAEQGGMVI 183
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
17-179 |
2.98e-10 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 58.75 E-value: 2.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRlrSRIGMVWQQPPLPASQP 95
Cdd:PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVvGIVPRDAGNIIIDDEDISLLPLHARAR--RGIGYLPQEASIFRRLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 V---VTAVLAGR--LGQWSLGRSLLSLLRPCDPAGARAELARlgladkwqqrcgELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:PRK10895 95 VydnLMAVLQIRddLSAEQREDRANELMEEFHIEHLRDSMGQ------------SLSGGERRRVEIARALAANPKFILLD 162
|
....*....
gi 1960140318 171 EPVSALDPV 179
Cdd:PRK10895 163 EPFAGVDPI 171
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
18-209 |
3.44e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 59.04 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQP-------- 88
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLInGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPdnqfvgat 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 --------------PLPASQPVVTAVLAgrlgqwslgrsllsllrpcdpagaraelaRLGLADKWQQRCGELSGGQLQRV 154
Cdd:PRK13640 102 vgddvafglenravPRPEMIKIVRDVLA-----------------------------DVGMLDYIDSEPANLSGGQKQRV 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 155 GIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELA 209
Cdd:PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA 207
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
23-246 |
3.69e-10 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 59.65 E-value: 3.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRsrIGMVWQQPPLPASQPVVTAVL 101
Cdd:COG1129 24 SLELRPGEVHALLGENGAGKSTLMKILsGVYQPDSGEILLDGEPVRFRSPRDAQAAG--IAIIHQELNLVPNLSVAENIF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 102 AGRLG------QWSLGRsllsllrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:COG1129 102 LGREPrrggliDWRAMR-----------RRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTAS 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 176 LDPVLAQsSLDALLAQARARGSTLIANLHAVE--LALGRfpRIIGLREGRVQFDCPAAAVTPAMLAELYAGDD 246
Cdd:COG1129 171 LTEREVE-RLFRIIRRLKAQGVAIIYISHRLDevFEIAD--RVTVLRDGRLVGTGPVAELTEDELVRLMVGRE 240
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
18-225 |
3.78e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 58.59 E-value: 3.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGE-------GRLtLWEQDPWTLstrdrqrlRSRIGMVWQQPPl 90
Cdd:PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAEsgqiiidGDL-LTEENVWDI--------RHKIGMVFQNPD- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 paSQPVVTAV---LAGRLGQwslgrsllsLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:PRK13650 92 --NQFVGATVeddVAFGLEN---------KGIPHEEMKERVNeaLELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 166 LILADEPVSALDPvlaQSSLDALLAQARAR---GSTLIANLHAV-ELALGRfpRIIGLREGRVQ 225
Cdd:PRK13650 161 IIILDEATSMLDP---EGRLELIKTIKGIRddyQMTVISITHDLdEVALSD--RVLVMKNGQVE 219
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
19-225 |
7.16e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.22 E-value: 7.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG--------EGRLTLWEQDPWTLSTRDRQRL----RSRIGMVWQ 86
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHaetssvviRGSVAYVPQVSWIFNATVRENIlfgsDFESERYWR 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 87 QPPLPASQPVVTaVLAGRlgqwslgrsllsllrpcdpagaraELARLGladkwqQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:PLN03232 713 AIDVTALQHDLD-LLPGR------------------------DLTEIG------ERGVNISGGQKQRVSMARAVYSNSDI 761
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 167 ILADEPVSALDPVLAQSSLDALLAQA-RARGSTLIAN-LHAVELalgrFPRIIGLREGRVQ 225
Cdd:PLN03232 762 YIFDDPLSALDAHVAHQVFDSCMKDElKGKTRVLVTNqLHFLPL----MDRIILVSEGMIK 818
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
18-225 |
7.19e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 57.69 E-value: 7.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRG-EGRLTLweqDPWTLSTRDRQRLRSRIGMVWQQPPlpaSQPV 96
Cdd:PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPqSGEIKI---DGITISKENLKEIRKKIGIIFQNPD---NQFI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAV-------LAGRLgqwslgrsllsllrpCDPAGARA---ELA-RLGLADKWQQRCGELSGGQLQRVGIARVLYQQPD 165
Cdd:PRK13632 98 GATVeddiafgLENKK---------------VPPKKMKDiidDLAkKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 166 LILADEPVSALDPvLAQSSLDALLAQARARGS-TLIANLHAVELALgRFPRIIGLREGRVQ 225
Cdd:PRK13632 163 IIIFDESTSMLDP-KGKREIKKIMVDLRKTRKkTLISITHDMDEAI-LADKVIVFSEGKLI 221
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
32-208 |
9.19e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 57.51 E-value: 9.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 32 VAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPWTlsTRDRQRLRSRIGMVWQQPPLPASQPVVTAVLAgrLGQWSLG 111
Cdd:PRK13652 33 IAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT--KENIREVRKFVGLVFQNPDDQIFSPTVEQDIA--FGPINLG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 112 RSLLSLLRPCDPAgaraeLARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQ 191
Cdd:PRK13652 109 LDEETVAHRVSSA-----LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDL 183
|
170
....*....|....*..
gi 1960140318 192 ARARGSTLIANLHAVEL 208
Cdd:PRK13652 184 PETYGMTVIFSTHQLDL 200
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
29-177 |
1.04e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 58.33 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 29 GECVAIIGPSGAGKT----SLLRLIGTElrgEGRLTLWEQDPWTLSTRDRQRLRSRIGMVWQQP--PLPASQPVVTAVLA 102
Cdd:PRK10261 350 GETLSLVGESGSGKSttgrALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPyaSLDPRQTVGDSIME 426
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1960140318 103 grlgqwslgRSLLSLLRPCDPAGARAE--LARLGLADKWQQRC-GELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PRK10261 427 ---------PLRVHGLLPGKAAAARVAwlLERVGLLPEHAWRYpHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
24-224 |
1.27e-09 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 57.89 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 24 LQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRLRSR----IGMVWQQPPLPASQPVV- 97
Cdd:TIGR03269 305 LEVKEGEIFGIVGTSGAGKTTLSKIIaGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRakryIGILHQEYDLYPHRTVLd 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 --TAVLAGRLgqwslgrsllsllrPCDPAGARA--ELARLGLADKWQQRC-----GELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:TIGR03269 385 nlTEAIGLEL--------------PDELARMKAviTLKMVGFDEEKAEEIldkypDELSEGERHRVALAQVLIKEPRIVI 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1960140318 169 ADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:TIGR03269 451 LDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
23-178 |
2.10e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 56.71 E-value: 2.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLweqDPWTLS--TRDR--QRLRSRIGMVWQqppLPASQ--- 94
Cdd:PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKpTTGTVTV---DDITIThkTKDKyiRPVRKRIGMVFQ---FPESQlfe 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 95 -PVVTAVLAGrlgqwslgrsLLSLLRPCDPAGARAE--LARLGLA-DKWQQRCGELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:PRK13646 101 dTVEREIIFG----------PKNFKMNLDEVKNYAHrlLMDLGFSrDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170
|
....*...
gi 1960140318 171 EPVSALDP 178
Cdd:PRK13646 171 EPTAGLDP 178
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
19-224 |
2.13e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 57.65 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTL------WEQDPWTlstrDRQRLRSRIGMVWQ-QPPL 90
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSaLLAEMDKVEGHVHMkgsvayVPQQAWI----QNDSLRENILFGKAlNEKY 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PASQPVVTAVLAGrlgqwslgrsllsllRPCDPAGARAELARLGLadkwqqrcgELSGGQLQRVGIARVLYQQPDLILAD 170
Cdd:TIGR00957 730 YQQVLEACALLPD---------------LEILPSGDRTEIGEKGV---------NLSGGQKQRVSLARAVYSNADIYLFD 785
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 171 EPVSALDPVLAQSSLDALLA-QARARGSTLIANLHAVELaLGRFPRIIGLREGRV 224
Cdd:TIGR00957 786 DPLSAVDAHVGKHIFEHVIGpEGVLKNKTRILVTHGISY-LPQVDVIIVMSGGKI 839
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
9-246 |
2.25e-09 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 56.19 E-value: 2.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 9 EGL--RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDpwtlSTRDRQRLRSRIGMVW 85
Cdd:COG1137 7 ENLvkSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIvGLVKPDSGRIFLDGED----ITHLPMHKRARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 86 qqppLP--ASqpV---------VTAVLAGRlgqwslgrsllsllrPCDPAGARAELARL----GLADKWQQRCGELSGGQ 150
Cdd:COG1137 83 ----LPqeAS--IfrkltvednILAVLELR---------------KLSKKEREERLEELleefGITHLRKSKAYSLSGGE 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 151 LQRVGIARVLYQQPDLILADEPVSALDPvLAQSSLDALLAQARARG-STLIANlHAVELALGrfprIIG----LREGRVq 225
Cdd:COG1137 142 RRRVEIARALATNPKFILLDEPFAGVDP-IAVADIQKIIRHLKERGiGVLITD-HNVRETLG----ICDrayiISEGKV- 214
|
250 260
....*....|....*....|....*..
gi 1960140318 226 fdcpAAAVTPAMLA------ELYAGDD 246
Cdd:COG1137 215 ----LAEGTPEEILnnplvrKVYLGED 237
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
18-177 |
2.26e-09 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 56.78 E-value: 2.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQrlrsrIGMVWQQPPLpasQPV 96
Cdd:PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVaGLERITSGEIWIGGRVVNELEPADRD-----IAMVFQNYAL---YPH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTavLAGRLGQwslgrsllsllrpcdpaG------ARAELAR--------LGLADKWQQRCGELSGGQLQRVGIARVLYQ 162
Cdd:PRK11650 91 MS--VRENMAY-----------------GlkirgmPKAEIEErvaeaariLELEPLLDRKPRELSGGQRQRVAMGRAIVR 151
|
170
....*....|....*
gi 1960140318 163 QPDLILADEPVSALD 177
Cdd:PRK11650 152 EPAVFLFDEPLSNLD 166
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
17-188 |
2.31e-09 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 56.23 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-G------TElrgeGRLTLWEQDPWTLSTRDRQRLRsrIGMVWQQPP 89
Cdd:COG0396 14 EILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLmGhpkyevTS----GSILLDGEDILELSPDERARAG--IFLAFQYPV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 ----LPASQPVVTAVLAGRLGQWSLGRSLLSllrpcdpagARAELARLGLADKWQQRC--GELSGGQLQRVGIARVLYQQ 163
Cdd:COG0396 88 eipgVSVSNFLRTALNARRGEELSAREFLKL---------LKEKMKELGLDEDFLDRYvnEGFSGGEKKRNEILQMLLLE 158
|
170 180
....*....|....*....|....*
gi 1960140318 164 PDLILADEPVSALDpvlaqssLDAL 188
Cdd:COG0396 159 PKLAILDETDSGLD-------IDAL 176
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
19-177 |
2.41e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 55.80 E-value: 2.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRLRSRIGMVW--QQPPLPASQPV 96
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYaaQKPWLLNATVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAVLAGRLGQWSLGRSLLSLLRPCD----PAGARAELARLGLadkwqqrcgELSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:cd03290 97 ENITFGSPFNKQRYKAVTDACSLQPDidllPFGDQTEIGERGI---------NLSGGQRQRICVARALYQNTNIVFLDDP 167
|
....*
gi 1960140318 173 VSALD 177
Cdd:cd03290 168 FSALD 172
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
23-189 |
2.72e-09 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 56.66 E-value: 2.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKT----SLLRLIGTELRGEGRLTLWEQDPWTLSTRDRQRLRS-RIGMVWQQP-----PLPA 92
Cdd:PRK09473 36 NFSLRAGETLGIVGESGSGKSqtafALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAeQISMIFQDPmtslnPYMR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 93 SQPVVTAVLAGRLGQwslgrsllsllrpcDPAGARAELARLGLADKW---QQRCG----ELSGGQLQRVGIARVLYQQPD 165
Cdd:PRK09473 116 VGEQLMEVLMLHKGM--------------SKAEAFEESVRMLDAVKMpeaRKRMKmyphEFSGGMRQRVMIAMALLCRPK 181
|
170 180
....*....|....*....|....
gi 1960140318 166 LILADEPVSALDpVLAQSSLDALL 189
Cdd:PRK09473 182 LLIADEPTTALD-VTVQAQIMTLL 204
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-244 |
2.99e-09 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 56.57 E-value: 2.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 3 AVALDGEGLRLGQSR---ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTLSTRDRQRL- 77
Cdd:COG3845 255 EVVLEVENLSVRDDRgvpALKDVSLEVRAGEILGIAGVAGNGQSELAEALaGLRPPASGSIRLDGEDITGLSPRERRRLg 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 78 -------RSRIGMVwqqpplpASQPVVTAVLAGRLGQWSLGRSLLSllrpcDPAGARAELARLglADKWQQRC------- 143
Cdd:COG3845 335 vayipedRLGRGLV-------PDMSVAENLILGRYRRPPFSRGGFL-----DRKAIRAFAEEL--IEEFDVRTpgpdtpa 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 144 GELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQARARGStlianlhAV-----------ELAlgr 212
Cdd:COG3845 401 RSLSGGNQQKVILARELSRDPKLLIAAQPTRGLD-VGAIEFIHQRLLELRDAGA-------AVllisedldeilALS--- 469
|
250 260 270
....*....|....*....|....*....|..
gi 1960140318 213 fPRIIGLREGRVQFDCPAAAVTPAMLAELYAG 244
Cdd:COG3845 470 -DRIAVMYEGRIVGEVPAAEATREEIGLLMAG 500
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
23-227 |
3.18e-09 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 56.25 E-value: 3.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLigteLRG-----EGRLTLWEQDPWtlstRDRQRLRSRIGMV--------WQQPP 89
Cdd:COG4586 42 SFTIEPGEIVGFIGPNGAGKSTTIKM----LTGilvptSGEVRVLGYVPF----KRRKEFARRIGVVfgqrsqlwWDLPA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 ------------LPASQpvvtavLAGRLgqwslgrsllsllrpcdpagarAELA-RLGLADKWQQRCGELSGGQLQRVGI 156
Cdd:COG4586 114 idsfrllkaiyrIPDAE------YKKRL----------------------DELVeLLDLGELLDTPVRQLSLGQRMRCEL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 157 ARVLYQQPDLILADEPVSALDpVLAQSSL-DALLAQARARGSTLIA---NLHAVElALGRfpRIIGLREGRVQFD 227
Cdd:COG4586 166 AAALLHRPKILFLDEPTIGLD-VVSKEAIrEFLKEYNRERGTTILLtshDMDDIE-ALCD--RVIVIDHGRIIYD 236
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
15-233 |
3.82e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 55.82 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 15 QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRDRQrLRSRIGMVWQQPPLPAS 93
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKpTSGKIIIDGVDITDKKVKLSD-IRKKVGLVFQYPEYQLF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAVLAgrLGQWSLGRSLLSLLRPCDPAGARAELARLGLADKwqqRCGELSGGQLQRVGIARVLYQQPDLILADEPV 173
Cdd:PRK13637 98 EETIEKDIA--FGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK---SPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 174 SALDPvlaqSSLDALLAQARA----RGSTLIANLHAVELALGRFPRIIGLREGRVQFDCPAAAV 233
Cdd:PRK13637 173 AGLDP----KGRDEILNKIKElhkeYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
12-216 |
3.93e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 56.56 E-value: 3.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTEL-RGEGRLTLWEQDPWTLSTRDRQRLRSRIgmvWQQ--P 88
Cdd:PRK10938 12 RLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELpLLSGERQSQFSHITRLSFEQLQKLVSDE---WQRnnT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLPASQPVVTAVLAGRLGQWSLGrsllsllrpcDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:PRK10938 89 DMLSPGEDDTGRTTAEIIQDEVK----------DPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1960140318 169 ADEPVSALDpVLAQSSLDALLAQARARGSTLIanlhaveLALGRFPRI 216
Cdd:PRK10938 159 LDEPFDGLD-VASRQQLAELLASLHQSGITLV-------LVLNRFDEI 198
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
29-224 |
3.99e-09 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 55.70 E-value: 3.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 29 GECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDP-----WTLSTRDRQRL-RSRIGMVWQQPplpaSQPVVTAVL 101
Cdd:PRK11701 32 GEVLGIVGESGSGKTTLLNALSARLApDAGEVHYRMRDGqlrdlYALSEAERRRLlRTEWGFVHQHP----RDGLRMQVS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 102 AG-----RL---------------GQWSlgrsllsllrpcdpagARAELARLGLADkwqqRCGELSGGQLQRVGIARVLY 161
Cdd:PRK11701 108 AGgnigeRLmavgarhygdirataGDWL----------------ERVEIDAARIDD----LPTTFSGGMQQRLQIARNLV 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 162 QQPDLILADEPVSALDpVLAQSSLDALLaqaraRGstLIANLH-AV-----ELALGRF--PRIIGLREGRV 224
Cdd:PRK11701 168 THPRLVFMDEPTGGLD-VSVQARLLDLL-----RG--LVRELGlAVvivthDLAVARLlaHRLLVMKQGRV 230
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
22-177 |
5.60e-09 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 55.11 E-value: 5.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 22 FNLQIAAG-----ECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQD-----PWTLS----TRDRQRLRSRIGMVWQQ 87
Cdd:cd03237 13 FTLEVEGGsisesEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDtvsykPQYIKadyeGTVRDLLSSITKDFYTH 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 88 PplpasqpvvtavlagrlgQWslgrsllsllrpcdpagaRAELAR-LGLADKWQQRCGELSGGQLQRVGIARVLYQQPDL 166
Cdd:cd03237 93 P------------------YF------------------KTEIAKpLQIEQILDREVPELSGGELQRVAIAACLSKDADI 136
|
170
....*....|.
gi 1960140318 167 ILADEPVSALD 177
Cdd:cd03237 137 YLLDEPSAYLD 147
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
22-190 |
7.11e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 55.71 E-value: 7.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 22 FNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEqdpwTLstrdrqrlrsRIGMVWQQ-PPLPASQPVVTA 99
Cdd:TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMItGQEQPDSGTIEIGE----TV----------KLAYVDQSrDALDPNKTVWEE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 100 VLAG----RLGQWSLgrsllsllrpcdpaGARAELARLGL--ADKwQQRCGELSGGQLQRVGIARVLYQQPDLILADEPV 173
Cdd:TIGR03719 407 ISGGldiiKLGKREI--------------PSRAYVGRFNFkgSDQ-QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471
|
170
....*....|....*..
gi 1960140318 174 SALDPVLAQSSLDALLA 190
Cdd:TIGR03719 472 NDLDVETLRALEEALLN 488
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
18-226 |
7.71e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 55.66 E-value: 7.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGrLTlweqdpWTLSTRDRQ---RLRSRIGMVWQQ----PPL 90
Cdd:PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNN-FT------GTILANNRKptkQILKRTGFVTQDdilyPHL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PASQPVVTAVLAgRLGQWSLGRSLLSLlrpcdpagARAELARLGLAdkwqqRCGE----------LSGGQLQRVGIARVL 160
Cdd:PLN03211 156 TVRETLVFCSLL-RLPKSLTKQEKILV--------AESVISELGLT-----KCENtiignsfirgISGGERKRVSIAHEM 221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 161 YQQPDLILADEPVSALDPVLAQSSLDALLAQARaRGSTLIANLHAVELALGR-FPRIIGLREGRVQF 226
Cdd:PLN03211 222 LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQmFDSVLVLSEGRCLF 287
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
23-236 |
8.86e-09 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 54.61 E-value: 8.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQDPWTLSTRdrqrLRSRIGMV--WQQPPLPASQPVV-- 97
Cdd:PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKpTGGTILLRGQHIEGLPGH----QIARMGVVrtFQHVRLFREMTVIen 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 ----------TAVLAGRLGQwslgrsllsllrpcdPAGARAE----------LARLGLADKWQQRCGELSGGQLQRVGIA 157
Cdd:PRK11300 101 llvaqhqqlkTGLFSGLLKT---------------PAFRRAEsealdraatwLERVGLLEHANRQAGNLAYGQQRRLEIA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 158 RVLYQQPDLILADEPVSALDPVlAQSSLDALLAQARAR-GSTLIANLHAVELALGRFPRIIGLREGRvqfdcPAAAVTPA 236
Cdd:PRK11300 166 RCMVTQPEILMLDEPAAGLNPK-ETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGT-----PLANGTPE 239
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
18-177 |
9.41e-09 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 54.86 E-value: 9.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTEL-------RGEGRLTLWEQDPWTLS-----------TRDRQRLRS 79
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELepsegkiKHSGRISFSSQFSWIMPgtikeniifgvSYDEYRYKS 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 80 rigmvwqqpplpasqpVVTAvlagrlgqwslgrsllsllrpcdpagARAELARLGLADKWQQRCGE----LSGGQLQRVG 155
Cdd:cd03291 132 ----------------VVKA--------------------------CQLEEDITKFPEKDNTVLGEggitLSGGQRARIS 169
|
170 180
....*....|....*....|..
gi 1960140318 156 IARVLYQQPDLILADEPVSALD 177
Cdd:cd03291 170 LARAVYKDADLYLLDSPFGYLD 191
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
17-224 |
1.00e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 54.63 E-value: 1.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTL---WEQDPWTLSTRDRQRLRSRIGMVWQQPPLPAS 93
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIvgdYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 94 QPVVTAVLAGRLGQWSLGRSLLSLLRPcdpagaraELARL-GLADKWQQRCG-ELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVP--------ELLKLvQLPEDYVKRSPfELSGGQKRRVALAGIIAMDGNTLVLDE 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 172 PVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:PRK13645 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
18-177 |
1.60e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 54.92 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTEL-------RGEGRLTLWEQDPWTLS-----------TRDRQRLRS 79
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELepsegkiKHSGRISFSPQTSWIMPgtikdniifglSYDEYRYTS 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 80 rigmvwqqpplpasqpVVTAvlagrlgqwslgrsllsllrpCDpagARAELARLGLADKWQQRCG--ELSGGQLQRVGIA 157
Cdd:TIGR01271 521 ----------------VIKA---------------------CQ---LEEDIALFPEKDKTVLGEGgiTLSGGQRARISLA 560
|
170 180
....*....|....*....|
gi 1960140318 158 RVLYQQPDLILADEPVSALD 177
Cdd:TIGR01271 561 RAVYKDADLYLLDSPFTHLD 580
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
14-191 |
3.12e-08 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 53.37 E-value: 3.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTsllrLIGTELRG---------EGRLTLWEQDPWTLSTRDRQRLRSR-IGM 83
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKS----LIAKAICGitkdnwhvtADRFRWNGIDLLKLSPRERRKIIGReIAM 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 84 VWQQPP--LPASQPVVTAV--------LAGRLGQWSLGRSLLsllrpcdpagARAELARLGLADkwQQRC-----GELSG 148
Cdd:COG4170 94 IFQEPSscLDPSAKIGDQLieaipswtFKGKWWQRFKWRKKR----------AIELLHRVGIKD--HKDImnsypHELTE 161
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1960140318 149 GQLQRVGIARVLYQQPDLILADEPVSALDPVlAQSSLDALLAQ 191
Cdd:COG4170 162 GECQKVMIAMAIANQPRLLIADEPTNAMEST-TQAQIFRLLAR 203
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
18-200 |
3.51e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.54 E-value: 3.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGE-GRLTLweqDPWTLSTRDRQRLRSRIGMvwqqppLPASQPV 96
Cdd:PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVEsGQIQI---DGKTATRGDRSRFMAYLGH------LPGLKAD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAV--------LAGRLGQWSlgrsllsllrpcdPAGAraeLARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:PRK13543 97 LSTLenlhflcgLHGRRAKQM-------------PGSA---LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160
|
170 180 190
....*....|....*....|....*....|..
gi 1960140318 169 ADEPVSALDPVLAQSSLDALLAQARARGSTLI 200
Cdd:PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRGGGAALV 192
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
17-204 |
3.83e-08 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 53.57 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLweqDPWTLSTRDRQRLRSRIGMVwQQPPLPASQP 95
Cdd:PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLmGYYPLTEGEIRL---DGRPLSSLSHSVLRQGVAMV-QQDPVVLADT 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 VVTAVLAGR----LGQWSLGRSLLSllrpcdpagarAELARlGLADKWQQRCGE----LSGGQLQRVGIARVLYQQPDLI 167
Cdd:PRK10790 431 FLANVTLGRdiseEQVWQALETVQL-----------AELAR-SLPDGLYTPLGEqgnnLSVGQKQLLALARVLVQTPQIL 498
|
170 180 190
....*....|....*....|....*....|....*..
gi 1960140318 168 LADEPVSALDPVLAQSSLDALlaQARARGSTLIANLH 204
Cdd:PRK10790 499 ILDEATANIDSGTEQAIQQAL--AAVREHTTLVVIAH 533
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-172 |
4.44e-08 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 53.10 E-value: 4.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 3 AVALDGEGLRLGqsRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQdpwTLSTRD-RQRLRSR 80
Cdd:COG1129 254 EVVLEVEGLSVG--GVVRDVSFSVRAGEILGIAGLVGAGRTELARALfGADPADSGEIRLDGK---PVRIRSpRDAIRAG 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 IGMVwqqpP-------LPASQPV---VTAVLAGRLGQWSLGrsllsllrpcDPAGARAE----LARLGL-ADKWQQRCGE 145
Cdd:COG1129 329 IAYV----PedrkgegLVLDLSIrenITLASLDRLSRGGLL----------DRRRERALaeeyIKRLRIkTPSPEQPVGN 394
|
170 180
....*....|....*....|....*..
gi 1960140318 146 LSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:COG1129 395 LSGGNQQKVVLAKWLATDPKVLILDEP 421
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
23-177 |
7.52e-08 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 52.18 E-value: 7.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIGTELR-GEGRLTLWEQdpwTLSTRDR-------QRlrsRIGMVWQQPPLPASQ 94
Cdd:PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRpQKGRIVLNGR---VLFDAEKgiclppeKR---RIGYVFQDARLFPHY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 95 PVVTAVLAGrlgqwslgrsllslLRPCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVS 174
Cdd:PRK11144 92 KVRGNLRYG--------------MAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLA 157
|
...
gi 1960140318 175 ALD 177
Cdd:PRK11144 158 SLD 160
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
16-229 |
1.07e-07 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 50.87 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 16 SRILQPFNLQIAAGECVAIIGPSGAGK----TSLLRLIGTElrgEGRLTLWEQDpwtLSTRDRQRLRSRIGMVWQQPPLp 91
Cdd:cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKstliLALFRFLEAE---EGKIEIDGID---ISTIPLEDLRSSLTIIPQDPTL- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 92 asqpvvtavLAGRLgqwslgrsllslLRPCDPAGARAElARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADE 171
Cdd:cd03369 94 ---------FSGTI------------RSNLDPFDEYSD-EEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 172 PVSALDpvlaqSSLDALLaQARAR----GSTLIANLHAVElALGRFPRIIGLREGRV-QFDCP 229
Cdd:cd03369 152 ATASID-----YATDALI-QKTIReeftNSTILTIAHRLR-TIIDYDKILVMDAGEVkEYDHP 207
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
14-177 |
1.25e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 51.86 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRL---IGTELRGEGRLtlweqdpwtlstrdrqRLRSRIGMVWQQPPL 90
Cdd:TIGR03719 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRImagVDKDFNGEARP----------------QPGIKVGYLPQEPQL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 91 PASQPVVTAVLAG---------RLGQWSLGRsllsllrpCDP-------AGARAEL-ARLGLADKWQQ-----------R 142
Cdd:TIGR03719 80 DPTKTVRENVEEGvaeikdaldRFNEISAKY--------AEPdadfdklAAEQAELqEIIDAADAWDLdsqleiamdalR 151
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1960140318 143 C-------GELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:TIGR03719 152 CppwdadvTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
5-53 |
1.64e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.43 E-value: 1.64e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 5 ALDGEGLRLG--QSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTEL 53
Cdd:PRK15064 319 ALEVENLTKGfdNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
19-225 |
2.33e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 51.28 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTEL--RGEGRLTLweqdpwtlstrdrqrlRSRIGMVwQQPPLPASQPV 96
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELppRSDASVVI----------------RGTVAYV-PQVSWIFNATV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 97 VTAVLAGrlgqwslgrsllsllRPCDPA---------GARAELARLGLADkwQQRCGE----LSGGQLQRVGIARVLYQQ 163
Cdd:PLN03130 696 RDNILFG---------------SPFDPEryeraidvtALQHDLDLLPGGD--LTEIGErgvnISGGQKQRVSMARAVYSN 758
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1960140318 164 PDLILADEPVSALDPVLAQSSLDALLAQA-RARGSTLIAN-LHavelALGRFPRIIGLREGRVQ 225
Cdd:PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDElRGKTRVLVTNqLH----FLSQVDRIILVHEGMIK 818
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-177 |
2.41e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 51.10 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 1 MIAVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTE-LRGEGRLTLwEQDpWTLStrdrqRLRs 79
Cdd:PRK11147 1 MSLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEvLLDDGRIIY-EQD-LIVA-----RLQ- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 80 rigmvwQQPPLPASQPVVTAVLAG--RLGQWSLGRSLLSLLRPCDPAGAR-AELAR----LGLADKWQ------QRCG-- 144
Cdd:PRK11147 73 ------QDPPRNVEGTVYDFVAEGieEQAEYLKRYHDISHLVETDPSEKNlNELAKlqeqLDHHNLWQlenrinEVLAql 146
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1960140318 145 ---------ELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PRK11147 147 gldpdaalsSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
26-224 |
2.76e-07 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 51.12 E-value: 2.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 26 IAAGECVAIIGPSGAGKTSLLRLIGtelR----GEGRLTLWEQDPWTLStrdRQRLRSRIGMVWQQPPLPAsQPVVTAVL 101
Cdd:PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQ---RvfdpQSGRILIDGTDIRTVT---RASLRRNIAVVFQDAGLFN-RSIEDNIR 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 102 AGRLGQWSLGRSLlsllrpcdpAGARAELARLGLA--DKWQQRCGE----LSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:PRK13657 431 VGRPDATDEEMRA---------AAERAQAHDFIERkpDGYDTVVGErgrqLSGGERQRLAIARALLKDPPILILDEATSA 501
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1960140318 176 LDPVLAQSSLDALLAQARARGSTLIAN-LHAVELAlgrfPRIIGLREGRV 224
Cdd:PRK13657 502 LDVETEAKVKAALDELMKGRTTFIIAHrLSTVRNA----DRILVFDNGRV 547
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
17-50 |
3.78e-07 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 49.45 E-value: 3.78e-07
10 20 30
....*....|....*....|....*....|....
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG 50
Cdd:cd03220 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLA 69
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
140-238 |
3.92e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 50.39 E-value: 3.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 140 QQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQARARGSTLIanLHAVEL--ALGRFPRII 217
Cdd:PRK10762 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD-VGAKKEIYQLINQFKAEGLSII--LVSSEMpeVLGMSDRIL 466
|
90 100
....*....|....*....|.
gi 1960140318 218 GLREGRVQFDCPAAAVTPAML 238
Cdd:PRK10762 467 VMHEGRISGEFTREQATQEKL 487
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
12-230 |
4.16e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 50.71 E-value: 4.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 12 RLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSL---LRLIGTELRGEGRLtlweqDPWTLSTRDRQRLRSRIGMVWQQP 88
Cdd:TIGR00957 1295 REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLtlgLFRINESAEGEIII-----DGLNIAKIGLHDLRFKITIIPQDP 1369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 89 PLpasqpvvtavLAGRLgqwslgrsllslLRPCDPAGARA--------ELARL-----GLADKWQQRCGE----LSGGQL 151
Cdd:TIGR00957 1370 VL----------FSGSL------------RMNLDPFSQYSdeevwwalELAHLktfvsALPDKLDHECAEggenLSVGQR 1427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 152 QRVGIARVLYQQPDLILADEPVSALDpvLAQSSLDALLAQARARGSTLIANLHAVELALGrFPRIIGLREGRVQ-FDCPA 230
Cdd:TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVD--LETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAeFGAPS 1504
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
18-224 |
5.06e-07 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 50.10 E-value: 5.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-------GTELRGEGR-LTLWEQDPWtlstrdrqrlRSRIGMVWQQPP 89
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIqrhfdvsEGDIRFHDIpLTKLQLDSW----------RSRLAVVSQTPF 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 LpASQPVVTAVLAGRlgqwslgrsllsllrpcdPAGARAEL---ARLG--------LADKWQQRCGE----LSGGQLQRV 154
Cdd:PRK10789 400 L-FSDTVANNIALGR------------------PDATQQEIehvARLAsvhddilrLPQGYDTEVGErgvmLSGGQKQRI 460
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 155 GIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARgsTLIANLHAVElALGRFPRIIGLREGRV 224
Cdd:PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TVIISAHRLS-ALTEASEILVMQHGHI 527
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
25-177 |
6.37e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 49.81 E-value: 6.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 25 QIAAGECVAIIGPSGAGKTSLLRLIGTELR---GEGRLTLweqdpwTLSTRDrQRLRsrigmvwqqpplpASQPV-VTAV 100
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKpdeGEVDPEL------KISYKP-QYIK-------------PDYDGtVEDL 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 101 L---AGRLG--QWslgrsllsllrpcdpagaRAELAR-LGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVS 174
Cdd:PRK13409 421 LrsiTDDLGssYY------------------KSEIIKpLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482
|
...
gi 1960140318 175 ALD 177
Cdd:PRK13409 483 HLD 485
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
17-50 |
6.96e-07 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 48.92 E-value: 6.96e-07
10 20 30
....*....|....*....|....*....|....
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIG 50
Cdd:COG1134 40 WALKDVSFEVERGESVGIIGRNGAGKSTLLKLIA 73
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
24-176 |
8.83e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 49.23 E-value: 8.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 24 LQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLtLWEQDPWTLS-TRDRQRlrSRIGMVWQQPPLPASQPVVTAVL 101
Cdd:PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKvLTGIYTRDAGSI-LYLGKEVTFNgPKSSQE--AGIGIIHQELNLIPQLTIAENIF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 102 AGR-----LG--QWSLGRsllsllrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVS 174
Cdd:PRK10762 102 LGRefvnrFGriDWKKMY-----------AEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTD 170
|
..
gi 1960140318 175 AL 176
Cdd:PRK10762 171 AL 172
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
6-177 |
1.05e-06 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 49.28 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRlgqsrilqPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQDPWTLSTRDRQRLrsriGMV 84
Cdd:PRK15439 274 LTGEGFR--------NISLEVRAGEILGLAGVVGAGRTELAEtLYGLRPARGGRIMLNGKEINALSTAQRLAR----GLV 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 85 W-----QQPPLPASQPV---VTAVLAGRLGQWSlgrsllsllrpcDPAGARAELAR----LG--LADKwQQRCGELSGGQ 150
Cdd:PRK15439 342 YlpedrQSSGLYLDAPLawnVCALTHNRRGFWI------------KPARENAVLERyrraLNikFNHA-EQAARTLSGGN 408
|
170 180
....*....|....*....|....*..
gi 1960140318 151 LQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
19-201 |
1.12e-06 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 49.25 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLIgTELR--GEGRLTLWEQD--PWTLSTrdrqrLRSRIGMVWQQPPLpASQ 94
Cdd:PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL-TRFYdiDEGEILLDGHDlrDYTLAS-----LRNQVALVSQNVHL-FND 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 95 PVVTAVLAGRLGQWslgrsllsllrpcdpagARAEL---ARLGLA----DKWQQ----RCGE----LSGGQLQRVGIARV 159
Cdd:PRK11176 432 TIANNIAYARTEQY-----------------SREQIeeaARMAYAmdfiNKMDNgldtVIGEngvlLSGGQRQRIAIARA 494
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1960140318 160 LYQQ-PDLILaDEPVSALD---PVLAQSSLDALlaqARARGSTLIA 201
Cdd:PRK11176 495 LLRDsPILIL-DEATSALDtesERAIQAALDEL---QKNRTSLVIA 536
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
122-177 |
1.13e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 49.04 E-value: 1.13e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 122 DPAGARAELA-RLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PRK13409 188 DERGKLDEVVeRLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
128-226 |
1.20e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 49.39 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 128 AELARL--GLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAqARARGSTLIANLHA 205
Cdd:PTZ00243 763 ADLAQLggGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL-GALAGKTRVLATHQ 841
|
90 100
....*....|....*....|.
gi 1960140318 206 VELaLGRFPRIIGLREGRVQF 226
Cdd:PTZ00243 842 VHV-VPRADYVVALGDGRVEF 861
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
23-176 |
1.56e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.77 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRG--EGRLtLWEQDPWTLST-RDRQRlrSRIGMVWQQPPLPASQPVVT 98
Cdd:PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKvLSGVYPHGtyEGEI-IFEGEELQASNiRDTER--AGIAIIHQELALVKELSVLE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 99 AVLAGRlgQWSlgrsllsllrpcdPAG--------ARAE--LARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:PRK13549 102 NIFLGN--EIT-------------PGGimdydamyLRAQklLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLI 166
|
....*...
gi 1960140318 169 ADEPVSAL 176
Cdd:PRK13549 167 LDEPTASL 174
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
19-204 |
1.73e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 48.43 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLweqDPWTLSTRDRQRLRSRIGMVWqqpplpasqpvv 97
Cdd:PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLtGLYQPQSGEILL---DGKPVTAEQPEDYRKLFSAVF------------ 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVlagrlgqWSLGRSLLSLLRPCDPAGARAELARLGLADKWQQRCGE-----LSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:PRK10522 404 TDF-------HLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRisnlkLSKGQKKRLALLLALAEERDILLLDEW 476
|
170 180 190
....*....|....*....|....*....|..
gi 1960140318 173 VSALDPVLAQSSLDALLAQARARGSTLIANLH 204
Cdd:PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
122-177 |
1.94e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 48.24 E-value: 1.94e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 122 DPAGARAELA-RLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:COG1245 188 DERGKLDELAeKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLD 244
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
25-177 |
1.97e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 48.24 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 25 QIAAGECVAIIGPSGAGKTSLLRLIGTELR---GEGRLTLweqdpwTLSTRDrQRLRSRIGMVwqqpplpasqpvVTAVL 101
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKpdeGEVDEDL------KISYKP-QYISPDYDGT------------VEEFL 422
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960140318 102 AGRLGQwslgrsllsllrPCDPAGARAELAR-LGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:COG1245 423 RSANTD------------DFGSSYYKTEIIKpLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 487
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
25-241 |
2.04e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 47.81 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 25 QIAAGECVAIIGPSGAGKT-SLLRLIG-TELRGE---GRLTLWEQDPWTLSTRDRQRL-RSRIGMVWQQPpLPASQPVVT 98
Cdd:PRK11022 29 SVKQGEVVGIVGESGSGKSvSSLAIMGlIDYPGRvmaEKLEFNGQDLQRISEKERRNLvGAEVAMIFQDP-MTSLNPCYT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 99 A----VLAGRLGQwslgrsllsllrpcdpAGARAE--------LARLGLADKwQQRCG----ELSGGQLQRVGIARVLYQ 162
Cdd:PRK11022 108 VgfqiMEAIKVHQ----------------GGNKKTrrqraidlLNQVGIPDP-ASRLDvyphQLSGGMSQRVMIAMAIAC 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 163 QPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGRVQ--------FDCPAAAVT 234
Cdd:PRK11022 171 RPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVetgkahdiFRAPRHPYT 250
|
....*..
gi 1960140318 235 PAMLAEL 241
Cdd:PRK11022 251 QALLRAL 257
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
32-190 |
2.11e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 48.19 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 32 VAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEqdpwT--LSTRDRqrlrSRIGM-----VWQqpplpasqpvvtaVLAG 103
Cdd:PRK11819 353 VGIIGPNGAGKSTLFKMItGQEQPDSGTIKIGE----TvkLAYVDQ----SRDALdpnktVWE-------------EISG 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 104 -----RLGQWSLGrsllsllrpcdpagARAELARLGL--ADKwQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSAL 176
Cdd:PRK11819 412 gldiiKVGNREIP--------------SRAYVGRFNFkgGDQ-QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476
|
170
....*....|....*
gi 1960140318 177 DpVLAQSSL-DALLA 190
Cdd:PRK11819 477 D-VETLRALeEALLE 490
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
17-193 |
9.70e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 46.16 E-value: 9.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI--------GTEL------RGEGRlTLWEqdpwtlstrdrqrLRSRIG 82
Cdd:PRK10938 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLItgdhpqgySNDLtlfgrrRGSGE-TIWD-------------IKKHIG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 83 MVWQQPPLP--ASQPVVTAVLAG---RLGQWSLGRSLLSLLrpcdpagARAELARLGL----ADKWQQRcgeLSGGQLQR 153
Cdd:PRK10938 340 YVSSSLHLDyrVSTSVRNVILSGffdSIGIYQAVSDRQQKL-------AQQWLDILGIdkrtADAPFHS---LSWGQQRL 409
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1960140318 154 VGIARVLYQQPDLILADEPVSALDPV---LAQSSLDALLAQAR 193
Cdd:PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLnrqLVRRFVDVLISEGE 452
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-200 |
1.12e-05 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 45.93 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQDPWTLSTRDRQRLRsrIG 82
Cdd:PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKvLSGIHEPTKGTITINNINYNKLDHKLAAQLG--IG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 83 MVWQQPPLPASQPVVTAVLAGRLG----------QWSLGRSLlsllrpcdpagARAELARLGLADKWQQRCGELSGGQLQ 152
Cdd:PRK09700 84 IIYQELSVIDELTVLENLYIGRHLtkkvcgvniiDWREMRVR-----------AAMMLLRVGLKVDLDEKVANLSISHKQ 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 153 RVGIARVLYQQPDLILADEPVSAldpvLAQSSLDALLA---QARARGSTLI 200
Cdd:PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSS----LTNKEVDYLFLimnQLRKEGTAIV 199
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-177 |
1.96e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 45.23 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 4 VALDGEGLRLGQSRILQpFNLQiaAGECVAIIGPSGAGKT----SLLRLI---GTELRGEGRLTLWEQ----DPWTLSTR 72
Cdd:PRK10261 20 IAFMQEQQKIAAVRNLS-FSLQ--RGETLAIVGESGSGKSvtalALMRLLeqaGGLVQCDKMLLRRRSrqviELSEQSAA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 73 DRQRLR-SRIGMVWQQPpLPASQPVVTavlagrLGQWSLGRSLLSLLRPCDPAGARA----ELARLGLADKWQQRC-GEL 146
Cdd:PRK10261 97 QMRHVRgADMAMIFQEP-MTSLNPVFT------VGEQIAESIRLHQGASREEAMVEAkrmlDQVRIPEAQTILSRYpHQL 169
|
170 180 190
....*....|....*....|....*....|.
gi 1960140318 147 SGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
6-239 |
2.25e-05 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 44.31 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 6 LDGEGLRLGQSRIL-QPFNLQIAAGECVAIIGPSGAGKT-SLLRLIGTELRG----EGRLTLwEQDPWTLSTrdrqrLRS 79
Cdd:PRK10418 5 IELRNIALQAAQPLvHGVSLTLQRGRVLALVGGSGSGKSlTCAAALGILPAGvrqtAGRVLL-DGKPVAPCA-----LRG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 80 RIGMVWQQPPLPASQPVVTAVLAGRlgqwslgRSLLSLLRPCDPAGARAELARLGLADK---WQQRCGELSGGQLQRVGI 156
Cdd:PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHAR-------ETCLALGKPADDATLTAALEAVGLENAarvLKLYPFEMSGGMLQRMMI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 157 ARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARARGSTLIANLH--------AVELALGRFPRIIGLREGRVQFDC 228
Cdd:PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHdmgvvarlADDVAVMSHGRIVEQGDVETLFNA 231
|
250
....*....|.
gi 1960140318 229 PAAAVTPAMLA 239
Cdd:PRK10418 232 PKHAVTRSLVS 242
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
14-223 |
2.29e-05 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 45.20 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 14 GQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRG--EGRLtLWEQDPWTLST-RDRQRlrSRIGMVWQQPP 89
Cdd:TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKiLSGVYPHGtwDGEI-YWSGSPLKASNiRDTER--AGIVIIHQELT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 90 LPASQPVVTAVLAGRlgqwSLGRSLLSLLRPCDPAGARAELARLGL-ADKWQQRCGELSGGQLQRVGIARVLYQQPDLIL 168
Cdd:TIGR02633 89 LVPELSVAENIFLGN----EITLPGGRMAYNAMYLRAKNLLRELQLdADNVTRPVGDYGGGQQQLVEIAKALNKQARLLI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 169 ADEPVSALDPVLAQSSLDaLLAQARARGSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:TIGR02633 165 LDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
19-177 |
2.61e-05 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 44.40 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 19 LQPFNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLweqDPWTLSTRDRQRLRSRIGMVWQQP--PLPASQp 95
Cdd:PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLaGMIEPTSGELLI---DDHPLHFGDYSYRSQRIRMIFQDPstSLNPRQ- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 vvtavlagRLGQWSLGRSLLSLLRPCDPAGAR--AELARLGL-ADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEP 172
Cdd:PRK15112 105 --------RISQILDFPLRLNTDLEPEQREKQiiETLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEA 176
|
....*
gi 1960140318 173 VSALD 177
Cdd:PRK15112 177 LASLD 181
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
29-220 |
2.91e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.13 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 29 GECVAIIGPSGAGKTSLLRLIGTELRgegrltlweqdpwtlstrdrqrlrsrigmvwqqpplPASQPVVTavlagrlgqw 108
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELG------------------------------------PPGGGVIY---------- 35
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 109 slgrsllsllrpCDPAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDP-----VLAQS 183
Cdd:smart00382 36 ------------IDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAeqealLLLLE 103
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1960140318 184 SLDALLAQARARGSTLIANLHAVE-----LALGRFPRIIGLR 220
Cdd:smart00382 104 ELRLLLLLKSEKNLTVILTTNDEKdlgpaLLRRRFDRRIVLL 145
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
146-177 |
2.91e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.02 E-value: 2.91e-05
10 20 30
....*....|....*....|....*....|..
gi 1960140318 146 LSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLD 1390
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
139-177 |
5.16e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 43.95 E-value: 5.16e-05
10 20 30
....*....|....*....|....*....|....*....
gi 1960140318 139 WQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
23-200 |
5.96e-05 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 43.64 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 23 NLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLT-----LWEQDPWTLSTRDRQRL-RSRIGMVWQQPP--LPASQ 94
Cdd:PRK15093 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTadrmrFDDIDLLRLSPRERRKLvGHNVSMIFQEPQscLDPSE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 95 PVVTAVLAG-----RLGQWSLGRSLLSLLrpcdpagARAELARLGLAD-KWQQRC--GELSGGQLQRVGIARVLYQQPDL 166
Cdd:PRK15093 107 RVGRQLMQNipgwtYKGRWWQRFGWRKRR-------AIELLHRVGIKDhKDAMRSfpYELTEGECQKVMIAIALANQPRL 179
|
170 180 190
....*....|....*....|....*....|....
gi 1960140318 167 ILADEPVSALDPVlAQSSLDALLAQARARGSTLI 200
Cdd:PRK15093 180 LIADEPTNAMEPT-TQAQIFRLLTRLNQNNNTTI 212
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
3-49 |
6.03e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 43.96 E-value: 6.03e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1960140318 3 AVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI 49
Cdd:NF033858 1 VARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLI 47
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
135-188 |
7.28e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.86 E-value: 7.28e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1960140318 135 LADKWQQRCG----ELSGGQLQRVGIARVLYQQPDLILADEPVSALD---PVLAQSSLDAL 188
Cdd:PTZ00265 565 LPDKYETLVGsnasKLSGGQKQRISIARAIIRNPKILILDEATSSLDnksEYLVQKTINNL 625
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
17-176 |
9.85e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 42.98 E-value: 9.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 17 RILQPFNLQIAAGECVAIIGPSGAGKTSLLR-LIGTELRGEGRLTLWEQDPWTLSTRDRqrLRSRIGMVWQQPPLPASQP 95
Cdd:PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKiLSGNYQPDAGSILIDGQEMRFASTTAA--LAAGVAIIYQELHLVPEMT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 VVTAVLAGRLGQWSLGRSLLSLLrpcdpAGARAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:PRK11288 96 VAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170
|
.
gi 1960140318 176 L 176
Cdd:PRK11288 171 L 171
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
18-212 |
1.02e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 42.24 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEqdpwtlstrdRQRLRSRIGMVWQQPPLPASQPVV 97
Cdd:PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE----------RQSIKKDLCTYQKQLCFVGHRSGI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 98 TAVLAGRLGQWSLGRSLLSllrpcdpAGARAELARL-GLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSAL 176
Cdd:PRK13540 86 NPYLTLRENCLYDIHFSPG-------AVGITELCRLfSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158
|
170 180 190
....*....|....*....|....*....|....*.
gi 1960140318 177 DPvLAQSSLDALLAQARARGSTLIANLHAvELALGR 212
Cdd:PRK13540 159 DE-LSLLTIITKIQEHRAKGGAVLLTSHQ-DLPLNK 192
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
22-224 |
1.10e-04 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 43.46 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 22 FNLQIAAGECVAIIGPSGAGKTSLLRLI-GTELRGEGRLTLWEQDPWTlstrDRQRLRSRIGMVWQQPPL-----PASQP 95
Cdd:TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILtGLLPPTSGTVLVGGKDIET----NLDAVRQSLGMCPQHNILfhhltVAEHI 1024
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 96 VVTAVLAGRlgQWSLGRSLLsllrpcdpagaRAELARLGLADKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSA 175
Cdd:TIGR01257 1025 LFYAQLKGR--SWEEAQLEM-----------EAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1960140318 176 LDPVLAQSSLDALLAQARARgsTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:TIGR01257 1092 VDPYSRRSIWDLLLKYRSGR--TIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
145-177 |
1.44e-04 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 41.97 E-value: 1.44e-04
10 20 30
....*....|....*....|....*....|...
gi 1960140318 145 ELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:cd03236 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
122-177 |
2.30e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 42.15 E-value: 2.30e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 122 DPAGARAE--LARLGLADKWQQR-CGELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:PLN03073 318 YTAEARAAsiLAGLSFTPEMQVKaTKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
18-204 |
2.42e-04 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 42.04 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGT--ELRGeGRLTLWE--------QDPW-TLSTrdrqrLRSRI---GM 83
Cdd:TIGR00954 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGElwPVYG-GRLTKPAkgklfyvpQRPYmTLGT-----LRDQIiypDS 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 84 VWQQPPLPASQPVVTAVLAG--------RLGQWSLGrsllsllrpCDpagaraelarlgladkWQQrcgELSGGQLQRVG 155
Cdd:TIGR00954 541 SEDMKRRGLSDKDLEQILDNvqlthileREGGWSAV---------QD----------------WMD---VLSGGEKQRIA 592
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1960140318 156 IARVLYQQPDLILADEPVSALDPVLAqsslDALLAQARARGSTLIANLH 204
Cdd:TIGR00954 593 MARLFYHKPQFAILDECTSAVSVDVE----GYMYRLCREFGITLFSVSH 637
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
123-177 |
2.70e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 40.63 E-value: 2.70e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1960140318 123 PAGARAELARLGLADKWQQRcgELSGGQLQRVGIARVLYQQPDLILADEPVSALD 177
Cdd:cd03222 51 PNGDNDEWDGITPVYKPQYI--DLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
32-190 |
2.91e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.77 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 32 VAIIGPSGAGKTSLLRLIGTELR---------GEGRLTLWEQ---DPWTLSTRdrqrlrsrigmvwqqpPLPASQPVVTA 99
Cdd:PLN03073 538 IAMVGPNGIGKSTILKLISGELQpssgtvfrsAKVRMAVFSQhhvDGLDLSSN----------------PLLYMMRCFPG 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 100 VLAGRLgqwslgrsllsllrpcdpagaRAELARLGLADKWQ-QRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDp 178
Cdd:PLN03073 602 VPEQKL---------------------RAHLGSFGVTGNLAlQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD- 659
|
170
....*....|..
gi 1960140318 179 vlaqssLDALLA 190
Cdd:PLN03073 660 ------LDAVEA 665
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
144-224 |
4.35e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 41.25 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 144 GELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:PRK10982 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID-VGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
.
gi 1960140318 224 V 224
Cdd:PRK10982 469 V 469
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
3-227 |
6.07e-04 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 40.49 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 3 AVALDGEGLRLGQSRILQPFNLQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEGRltlweqDPWTLST--RDRQRLRSR 80
Cdd:NF000106 13 AVEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAGR------RPWRF*TwcANRRALRRT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 81 IGMvwqqpplpaSQPVVTAVLAGRLGQWSLGRSLLSLLRPCDPAGARAE--LARLGLADKWQQRCGELSGGQLQRVGIAR 158
Cdd:NF000106 87 IG*---------HRPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADelLERFSLTEAAGRAAAKYSGGMRRRLDLAA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960140318 159 VLYQQPDLILADEPVSALDPVLAQSSLDALLAQARaRGSTLIANLHAVELALGRFPRIIGLREGRVQFD 227
Cdd:NF000106 158 SMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVR-DGATVLLTTQYMEEAEQLAHELTVIDRGRVIAD 225
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
18-49 |
6.68e-04 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 40.01 E-value: 6.68e-04
10 20 30
....*....|....*....|....*....|..
gi 1960140318 18 ILQPFNLQIAAGECVAIIGPSGAGKTSLLRLI 49
Cdd:CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVI 53
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
144-227 |
9.28e-04 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 40.19 E-value: 9.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 144 GELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQARARGSTLIANLHAVELALGRFPRIIGLREGR 223
Cdd:TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD-VGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480
|
....
gi 1960140318 224 VQFD 227
Cdd:TIGR02633 481 LKGD 484
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
137-189 |
1.28e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 39.77 E-value: 1.28e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1960140318 137 DKWQQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALL 189
Cdd:PRK10636 422 DKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI 474
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
146-226 |
2.24e-03 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 38.01 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 146 LSGGQLQRVGIARVLYQQPDLILADEPVSALDPVLAQSSLDALLAQARA-RGSTLIANLHAVELALGRFPRIIGLREGRV 224
Cdd:cd03233 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVlKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198
|
..
gi 1960140318 225 QF 226
Cdd:cd03233 199 IY 200
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
140-241 |
4.54e-03 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 37.97 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 140 QQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQARARGSTLIanLHAVELA--LGRFPRII 217
Cdd:PRK11288 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID-VGAKHEIYNVIYELAAQGVAVL--FVSSDLPevLGVADRIV 467
|
90 100
....*....|....*....|....
gi 1960140318 218 GLREGRVQFDCPAAAVTPAMLAEL 241
Cdd:PRK11288 468 VMREGRIAGELAREQATERQALSL 491
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
128-224 |
5.13e-03 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 37.84 E-value: 5.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960140318 128 AELARLGLADKW---QQRCGELSGGQLQRVGIARVLYQQPDLILADEPVSALDpVLAQSSLDALLAQARARGSTLIANLH 204
Cdd:PRK09700 389 AENQRELLALKChsvNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGID-VGAKAEIYKVMRQLADDGKVILMVSS 467
|
90 100
....*....|....*....|
gi 1960140318 205 AVELALGRFPRIIGLREGRV 224
Cdd:PRK09700 468 ELPEIITVCDRIAVFCEGRL 487
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
24-57 |
5.56e-03 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 36.36 E-value: 5.56e-03
10 20 30
....*....|....*....|....*....|....
gi 1960140318 24 LQIAAGECVAIIGPSGAGKTSLLRLIGTELRGEG 57
Cdd:cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANELFRPG 47
|
|
| COG4928 |
COG4928 |
Predicted P-loop ATPase, KAP-like [General function prediction only]; |
32-67 |
6.22e-03 |
|
Predicted P-loop ATPase, KAP-like [General function prediction only];
Pssm-ID: 443956 Cd Length: 386 Bit Score: 37.58 E-value: 6.22e-03
10 20 30
....*....|....*....|....*....|....*.
gi 1960140318 32 VAIIGPSGAGKTSLLRLIGTELRGEGRLTLWEQDPW 67
Cdd:COG4928 32 IGLDGEWGSGKTSFLNLIEKELESNEKVIVVYFNAW 67
|
|
| MobB |
COG1763 |
Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme transport and metabolism]; ... |
32-57 |
7.49e-03 |
|
Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme transport and metabolism]; Molybdopterin-guanine dinucleotide biosynthesis protein is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 441369 [Multi-domain] Cd Length: 162 Bit Score: 36.31 E-value: 7.49e-03
10 20
....*....|....*....|....*..
gi 1960140318 32 VAIIGPSGAGKTSLL-RLIgTELRGEG 57
Cdd:COG1763 4 LGIVGYSGSGKTTLLeKLI-PELKARG 29
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
141-178 |
8.54e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 36.15 E-value: 8.54e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1960140318 141 QRCGELSGGQLQRVGIARVLYQQPD--LILADEPVSALDP 178
Cdd:cd03238 83 QKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQ 122
|
|
| |
