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Conserved domains on  [gi|1959312263|ref|WP_201768921|]
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MULTISPECIES: 30S ribosomal protein S17 [Myxococcus]

Protein Classification

small ribosomal subunit protein uS17( domain architecture ID 10000695)

small ribosomal subunit protein uS17, also called 30S ribosomal protein S17 in bacteria, is one of the primary rRNA binding proteins; it binds specifically to the 5'-end of 16S ribosomal RNA and plays a role in translational accuracy

CATH:  2.40.50.140
Gene Ontology:  GO:0015935|GO:0005840|GO:0019843|GO:0003735|GO:0006412
PubMed:  24524803|12900959|11297922|11290319
SCOP:  4001909

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 15-106 1.56e-32

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439956  Cd Length: 87  Bit Score: 108.67  E-value: 1.56e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959312263  15 ETSTRGRPKTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDK 94
Cdd:COG0186     1 MSEERVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNEC------KVGDTVRIMETRPLSKTK 74

                          90
                  ....*....|..
gi 1959312263  95 RWRVVEVLEKSK 106
Cdd:COG0186    75 RWRVVEIVEKAK 86
 
Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 15-106 1.56e-32

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 108.67  E-value: 1.56e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959312263  15 ETSTRGRPKTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDK 94
Cdd:COG0186     1 MSEERVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNEC------KVGDTVRIMETRPLSKTK 74

                          90
                  ....*....|..
gi 1959312263  95 RWRVVEVLEKSK 106
Cdd:COG0186    75 RWRVVEIVEKAK 86
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 19-106 1.51e-28

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 98.69  E-value: 1.51e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959312263  19 RGRPKTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDKRWRV 98
Cdd:PRK05610    3 RMPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEA------KIGDVVRIMETRPLSKTKRWRL 76


                  ....*...
gi 1959312263  99 VEVLEKSK 106
Cdd:PRK05610   77 VEIVEKAV 84
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 23-101 5.34e-26

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 91.72  E-value: 5.34e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1959312263  23 KTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDKRWRVVEV 101
Cdd:cd00364     1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNEC------KVGDIVRIGECRPLSKTKRWVVVEI 73
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 23-99 3.39e-24

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 87.21  E-value: 3.39e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1959312263  23 KTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDKRWRVV 99
Cdd:TIGR03635   2 KTLQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNEC------KVGDVVRIIETRPLSKTKRWRLV 72
Ribosomal_S17 pfam00366
Ribosomal protein S17;
27-100 6.66e-24

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 86.29  E-value: 6.66e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1959312263  27 GIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDKRWRVVE 100
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNEC------KVGDVVRIGECRPLSKTKRWVVVE 68
 
Name Accession Description Interval E-value
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 15-106 1.56e-32

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 108.67  E-value: 1.56e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959312263  15 ETSTRGRPKTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDK 94
Cdd:COG0186     1 MSEERVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNEC------KVGDTVRIMETRPLSKTK 74

                          90
                  ....*....|..
gi 1959312263  95 RWRVVEVLEKSK 106
Cdd:COG0186    75 RWRVVEIVEKAK 86
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 19-106 1.51e-28

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 98.69  E-value: 1.51e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959312263  19 RGRPKTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDKRWRV 98
Cdd:PRK05610    3 RMPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEA------KIGDVVRIMETRPLSKTKRWRL 76


                  ....*...
gi 1959312263  99 VEVLEKSK 106
Cdd:PRK05610   77 VEIVEKAV 84
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 23-101 5.34e-26

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 91.72  E-value: 5.34e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1959312263  23 KTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDKRWRVVEV 101
Cdd:cd00364     1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNEC------KVGDIVRIGECRPLSKTKRWVVVEI 73
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 23-99 3.39e-24

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 87.21  E-value: 3.39e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1959312263  23 KTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDKRWRVV 99
Cdd:TIGR03635   2 KTLQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNEC------KVGDVVRIIETRPLSKTKRWRLV 72
Ribosomal_S17 pfam00366
Ribosomal protein S17;
27-100 6.66e-24

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 86.29  E-value: 6.66e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1959312263  27 GIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHDYpkkvtiNEGDRVRIAETKPASKDKRWRVVE 100
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNEC------KVGDVVRIGECRPLSKTKRWVVVE 68
rps17 CHL00142
ribosomal protein S17; Validated
 23-108 1.45e-22

ribosomal protein S17; Validated


Pssm-ID: 177064  Cd Length: 84  Bit Score: 83.56  E-value: 1.45e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959312263  23 KTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVEDHdypkkvTINEGDRVRIAETKPASKDKRWRVVEVL 102
Cdd:CHL00142    4 KEKIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVHDEEN------ECNIGDQVLIEETRPLSKTKRWILKEIL 77


                  ....*.
gi 1959312263 103 EKSKNV 108
Cdd:CHL00142   78 SKSSLS 83
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 21-104 6.22e-15

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 64.55  E-value: 6.22e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959312263  21 RPKTRVGIVTSNKMQKTVVVTVQRRAPHPKYGKIMSLREKYKAHVedhdyPKKVTINEGDRVRIAETKPASKDKRWRVVE 100
Cdd:PRK08572   28 RGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHN-----PPCIDAKVGDKVKIAECRPLSKTKSFVVVE 102


                  ....
gi 1959312263 101 VLEK 104
Cdd:PRK08572  103 KKER 106
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 17-105 9.35e-04

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 36.22  E-value: 9.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959312263  17 STRGRpkTRVGIVTSNKMQKTVVVtvqrRAPHPKYGKIMSLREKYKAHVEDHDYPkKVTINEGDRVRIAETKPASKDKRW 96
Cdd:PTZ00241   65 SIRGR--ILRGVVISTKMKRTIII----RRDYLHYVKKYNRYEKRHKNIPVHCSP-CFDVKEGDIVVVGQCRPLSKTVRF 137


                  ....*....
gi 1959312263  97 RVVEVLEKS 105
Cdd:PTZ00241  138 NVLKVEKNE 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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