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Conserved domains on  [gi|1949752436|ref|WP_198589020|]
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RimK/LysX family protein [Vibrio breoganii]

Protein Classification

ATP-dependent zinc protease( domain architecture ID 10008226)

ATP-dependent zinc protease such as retroviral-like aspartic protease, which contains a conserved active site motif (Asp-Thr/Ser-Gly-Ser) and belongs to a family that includes both cellular and retroviral pepsin-like aspartate proteases

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4067 COG4067
Uncharacterized conserved protein [Function unknown];
1-141 2.31e-73

Uncharacterized conserved protein [Function unknown];


:

Pssm-ID: 443244  Cd Length: 150  Bit Score: 215.82  E-value: 2.31e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949752436   1 MMDRLIIGNLELCSLPDLGIVDLEVRVDTGAKTSSLHADNIRKFRKNGKPYVEFDLHPDIYNLDKIVTCQAKVIDSRKIK 80
Cdd:COG4067     7 AADKLIIGWREWVALPELGIPAIKAKIDTGARTSSLHAFNIEEFERDGEDWVRFTVHPPQGDTDTEVECEAPVVRRRKIK 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1949752436  81 SSNGEAEQRCVIKTTFGIAGHSWPIEVTLTNRKDMSYLMLLGREGMGNKVYVDPSRAFTLE 141
Cdd:COG4067    87 SSGGHAERRPVVETPLCLGGQTWEIEFTLTDRSDMNYPMLLGRTALRGRFLVDPSRSFLQG 147
 
Name Accession Description Interval E-value
COG4067 COG4067
Uncharacterized conserved protein [Function unknown];
1-141 2.31e-73

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443244  Cd Length: 150  Bit Score: 215.82  E-value: 2.31e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949752436   1 MMDRLIIGNLELCSLPDLGIVDLEVRVDTGAKTSSLHADNIRKFRKNGKPYVEFDLHPDIYNLDKIVTCQAKVIDSRKIK 80
Cdd:COG4067     7 AADKLIIGWREWVALPELGIPAIKAKIDTGARTSSLHAFNIEEFERDGEDWVRFTVHPPQGDTDTEVECEAPVVRRRKIK 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1949752436  81 SSNGEAEQRCVIKTTFGIAGHSWPIEVTLTNRKDMSYLMLLGREGMGNKVYVDPSRAFTLE 141
Cdd:COG4067    87 SSGGHAERRPVVETPLCLGGQTWEIEFTLTDRSDMNYPMLLGRTALRGRFLVDPSRSFLQG 147
Zn_protease pfam05618
Putative ATP-dependant zinc protease; Proteins in this family are annotated as being ...
 6-139 1.63e-34

Putative ATP-dependant zinc protease; Proteins in this family are annotated as being ATP-dependant zinc proteases.


Pssm-ID: 283308  Cd Length: 138  Bit Score: 116.86  E-value: 1.63e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949752436   6 IIGNLELCSLPDLGIvDLEVRVDTGAKTSSLHADNIRKFRKNGKPYVEFDLHPDIYNLDKIVTCQAKVIDSRKIKSSNGE 85
Cdd:pfam05618   1 VVGWIEELFLPGLKI-QLKAKIDTGALTSSLSAGDIWSFERDGESWVRFKETRLDTKNQRGYTLEAPVLRIVKIRQSGGD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1949752436  86 AEQRCVIKTTFGIAGHSWPIEVTLTNRKDMSYLMLLG-REGMGNKVYVDPSRAFT 139
Cdd:pfam05618  80 AERRPVIKLYLCLGPKIERIEFTLTDRSLMKYPVLLGsRALRKHLAEVDPSRKYI 134
 
Name Accession Description Interval E-value
COG4067 COG4067
Uncharacterized conserved protein [Function unknown];
1-141 2.31e-73

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443244  Cd Length: 150  Bit Score: 215.82  E-value: 2.31e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949752436   1 MMDRLIIGNLELCSLPDLGIVDLEVRVDTGAKTSSLHADNIRKFRKNGKPYVEFDLHPDIYNLDKIVTCQAKVIDSRKIK 80
Cdd:COG4067     7 AADKLIIGWREWVALPELGIPAIKAKIDTGARTSSLHAFNIEEFERDGEDWVRFTVHPPQGDTDTEVECEAPVVRRRKIK 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1949752436  81 SSNGEAEQRCVIKTTFGIAGHSWPIEVTLTNRKDMSYLMLLGREGMGNKVYVDPSRAFTLE 141
Cdd:COG4067    87 SSGGHAERRPVVETPLCLGGQTWEIEFTLTDRSDMNYPMLLGRTALRGRFLVDPSRSFLQG 147
Zn_protease pfam05618
Putative ATP-dependant zinc protease; Proteins in this family are annotated as being ...
 6-139 1.63e-34

Putative ATP-dependant zinc protease; Proteins in this family are annotated as being ATP-dependant zinc proteases.


Pssm-ID: 283308  Cd Length: 138  Bit Score: 116.86  E-value: 1.63e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949752436   6 IIGNLELCSLPDLGIvDLEVRVDTGAKTSSLHADNIRKFRKNGKPYVEFDLHPDIYNLDKIVTCQAKVIDSRKIKSSNGE 85
Cdd:pfam05618   1 VVGWIEELFLPGLKI-QLKAKIDTGALTSSLSAGDIWSFERDGESWVRFKETRLDTKNQRGYTLEAPVLRIVKIRQSGGD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1949752436  86 AEQRCVIKTTFGIAGHSWPIEVTLTNRKDMSYLMLLG-REGMGNKVYVDPSRAFT 139
Cdd:pfam05618  80 AERRPVIKLYLCLGPKIERIEFTLTDRSLMKYPVLLGsRALRKHLAEVDPSRKYI 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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