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Conserved domains on  [gi|1933976291|ref|WP_195250940|]
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hypothetical protein [Coprococcus comes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABC_trans_CmpB super family cl46401
Putative ABC-transporter type IV; CmpB is a family of membrane proteins that are likely to be ...
 61-124 3.91e-08

Putative ABC-transporter type IV; CmpB is a family of membrane proteins that are likely to be part of a two-component type IV ABC-transporter system. Families can transport multiple drugs including ethidium and fluoroquinolones. UniProtKB:Q83XH0 is a member of TCDB family 3.A.1.121.4.


The actual alignment was detected with superfamily member COG4905:

Pssm-ID: 480741  Cd Length: 179  Bit Score: 49.47  E-value: 3.91e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933976291  61 PMWIQIIRAVLFLTSLEFMTGIICNKWLKIGIWDYRDQPFQLCGQICLPFMVMFsGLLCLAIVF 124
Cdd:COG4905    57 NLLLLFLVGAILTTVLEYITGWLLEKLFHAKWWDYSNMPFNINGRICLPFSLFW-GILGVLLVK 119
 
Name Accession Description Interval E-value
COG4905 COG4905
Uncharacterized membrane protein [Function unknown];
61-124 3.91e-08

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 443933  Cd Length: 179  Bit Score: 49.47  E-value: 3.91e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933976291  61 PMWIQIIRAVLFLTSLEFMTGIICNKWLKIGIWDYRDQPFQLCGQICLPFMVMFsGLLCLAIVF 124
Cdd:COG4905    57 NLLLLFLVGAILTTVLEYITGWLLEKLFHAKWWDYSNMPFNINGRICLPFSLFW-GILGVLLVK 119
ABC_trans_CmpB pfam06541
Putative ABC-transporter type IV; CmpB is a family of membrane proteins that are likely to be ...
 41-124 3.99e-05

Putative ABC-transporter type IV; CmpB is a family of membrane proteins that are likely to be part of a two-component type IV ABC-transporter system. Families can transport multiple drugs including ethidium and fluoroquinolones. UniProtKB:Q83XH0 is a member of TCDB family 3.A.1.121.4.


Pssm-ID: 461942  Cd Length: 149  Bit Score: 40.90  E-value: 3.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933976291  41 LGGVTLTFCSfqgevMHWSEPMWIQIIRAVLFLTSLEFMTGIICNKWLKIGIWDYRDQPFQLCGQICLPFMVMFsGLLCL 120
Cdd:pfam06541  41 FGAVLLLLLL-----KPLKNNPVLLFLAGAVLATVLEYITGWLLEKLFHARWWDYSDKPFNINGRICLLFSLFW-GLLGV 114


                  ....
gi 1933976291 121 AIVF 124
Cdd:pfam06541 115 LLVK 118
 
Name Accession Description Interval E-value
COG4905 COG4905
Uncharacterized membrane protein [Function unknown];
61-124 3.91e-08

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 443933  Cd Length: 179  Bit Score: 49.47  E-value: 3.91e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933976291  61 PMWIQIIRAVLFLTSLEFMTGIICNKWLKIGIWDYRDQPFQLCGQICLPFMVMFsGLLCLAIVF 124
Cdd:COG4905    57 NLLLLFLVGAILTTVLEYITGWLLEKLFHAKWWDYSNMPFNINGRICLPFSLFW-GILGVLLVK 119
ABC_trans_CmpB pfam06541
Putative ABC-transporter type IV; CmpB is a family of membrane proteins that are likely to be ...
 41-124 3.99e-05

Putative ABC-transporter type IV; CmpB is a family of membrane proteins that are likely to be part of a two-component type IV ABC-transporter system. Families can transport multiple drugs including ethidium and fluoroquinolones. UniProtKB:Q83XH0 is a member of TCDB family 3.A.1.121.4.


Pssm-ID: 461942  Cd Length: 149  Bit Score: 40.90  E-value: 3.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933976291  41 LGGVTLTFCSfqgevMHWSEPMWIQIIRAVLFLTSLEFMTGIICNKWLKIGIWDYRDQPFQLCGQICLPFMVMFsGLLCL 120
Cdd:pfam06541  41 FGAVLLLLLL-----KPLKNNPVLLFLAGAVLATVLEYITGWLLEKLFHARWWDYSDKPFNINGRICLLFSLFW-GLLGV 114


                  ....
gi 1933976291 121 AIVF 124
Cdd:pfam06541 115 LLVK 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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