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Conserved domains on  [gi|1914916746|ref|WP_192535142|]
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type VI secretion system baseplate subunit TssK, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T6SS_VasE super family cl01406
Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial ...
 2-99 2.55e-15

Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial proteins that are essential for the type VI pathogenic secretion system, although the exact function of this particular component of the system is still not known.


The actual alignment was detected with superfamily member pfam05936:

Pssm-ID: 470190  Cd Length: 427  Bit Score: 69.92  E-value: 2.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914916746   2 DVYIMLRSEVfrgNAKALI-HTPD-IKISSSDDINTIIQHALPGVAMELMECAPGGLPERMDTVWLKINVADVLWSKMQR 79
Cdd:pfam05936 331 RFYLAVRADM---PAEELRqRFPAqAKIGSPERIRELVNSALPGIPLRPLPVPPRQIPYRAGYQYFELDKQGPLWKQLLQ 407

                          90       100
                  ....*....|....*....|
gi 1914916746  80 DKNVSLYWVAAPEDLYIELI 99
Cdd:pfam05936 408 SGGIALHVPGEFPDLQLELW 427
 
Name Accession Description Interval E-value
T6SS_VasE pfam05936
Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial ...
 2-99 2.55e-15

Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial proteins that are essential for the type VI pathogenic secretion system, although the exact function of this particular component of the system is still not known.


Pssm-ID: 428679  Cd Length: 427  Bit Score: 69.92  E-value: 2.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914916746   2 DVYIMLRSEVfrgNAKALI-HTPD-IKISSSDDINTIIQHALPGVAMELMECAPGGLPERMDTVWLKINVADVLWSKMQR 79
Cdd:pfam05936 331 RFYLAVRADM---PAEELRqRFPAqAKIGSPERIRELVNSALPGIPLRPLPVPPRQIPYRAGYQYFELDKQGPLWKQLLQ 407

                          90       100
                  ....*....|....*....|
gi 1914916746  80 DKNVSLYWVAAPEDLYIELI 99
Cdd:pfam05936 408 SGGIALHVPGEFPDLQLELW 427
 
Name Accession Description Interval E-value
T6SS_VasE pfam05936
Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial ...
 2-99 2.55e-15

Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE; T6SS_VasE is a family of of bacterial proteins that are essential for the type VI pathogenic secretion system, although the exact function of this particular component of the system is still not known.


Pssm-ID: 428679  Cd Length: 427  Bit Score: 69.92  E-value: 2.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1914916746   2 DVYIMLRSEVfrgNAKALI-HTPD-IKISSSDDINTIIQHALPGVAMELMECAPGGLPERMDTVWLKINVADVLWSKMQR 79
Cdd:pfam05936 331 RFYLAVRADM---PAEELRqRFPAqAKIGSPERIRELVNSALPGIPLRPLPVPPRQIPYRAGYQYFELDKQGPLWKQLLQ 407

                          90       100
                  ....*....|....*....|
gi 1914916746  80 DKNVSLYWVAAPEDLYIELI 99
Cdd:pfam05936 408 SGGIALHVPGEFPDLQLELW 427
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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