RuBisCO accumulation factor 1 [Leptolyngbya sp. FACHB-261]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
RuBisCo_chap_C | pfam18087 | Rubisco Assembly chaperone C-terminal domain; This is the C-terminal domain, also known as the ... |
214-351 | 2.82e-71 | |||
Rubisco Assembly chaperone C-terminal domain; This is the C-terminal domain, also known as the beta domain, of Rubsico Assembly Chaperone protein (Raf1). Raf1 is necessary for rubisco to catalyze the rate-limiting step of carbon fixation through carboxylating the five-carbon sugar substrate ribulose-1,5-bisphosphate. The beta domains primary function is dimerization, which is critical for Raf1 to achieve the necessary avidity for complex formation with RbcL (the large complex sub-unbit of Rubsico) assembly intermediates. The beta domain is also involved, to a small extent, in binding to RbcL with use of the lustiness near the beta domain's conserved top surface. : Pssm-ID: 436262 Cd Length: 138 Bit Score: 218.57 E-value: 2.82e-71
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Raf1_N | pfam18578 | Rubisco accumulation factor 1 alpha helical domain; This is the N-terminal alpha helical ... |
95-200 | 1.25e-58 | |||
Rubisco accumulation factor 1 alpha helical domain; This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive. : Pssm-ID: 436592 Cd Length: 106 Bit Score: 184.98 E-value: 1.25e-58
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Raf1_HTH | pfam18579 | Rubisco accumulation factor 1 helix turn helix domain; This is helix turn helix domain found ... |
23-83 | 1.40e-35 | |||
Rubisco accumulation factor 1 helix turn helix domain; This is helix turn helix domain found in alpha helical region of Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive. : Pssm-ID: 436593 Cd Length: 61 Bit Score: 124.19 E-value: 1.40e-35
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Name | Accession | Description | Interval | E-value | |||
RuBisCo_chap_C | pfam18087 | Rubisco Assembly chaperone C-terminal domain; This is the C-terminal domain, also known as the ... |
214-351 | 2.82e-71 | |||
Rubisco Assembly chaperone C-terminal domain; This is the C-terminal domain, also known as the beta domain, of Rubsico Assembly Chaperone protein (Raf1). Raf1 is necessary for rubisco to catalyze the rate-limiting step of carbon fixation through carboxylating the five-carbon sugar substrate ribulose-1,5-bisphosphate. The beta domains primary function is dimerization, which is critical for Raf1 to achieve the necessary avidity for complex formation with RbcL (the large complex sub-unbit of Rubsico) assembly intermediates. The beta domain is also involved, to a small extent, in binding to RbcL with use of the lustiness near the beta domain's conserved top surface. Pssm-ID: 436262 Cd Length: 138 Bit Score: 218.57 E-value: 2.82e-71
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Raf1_N | pfam18578 | Rubisco accumulation factor 1 alpha helical domain; This is the N-terminal alpha helical ... |
95-200 | 1.25e-58 | |||
Rubisco accumulation factor 1 alpha helical domain; This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive. Pssm-ID: 436592 Cd Length: 106 Bit Score: 184.98 E-value: 1.25e-58
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Raf1_HTH | pfam18579 | Rubisco accumulation factor 1 helix turn helix domain; This is helix turn helix domain found ... |
23-83 | 1.40e-35 | |||
Rubisco accumulation factor 1 helix turn helix domain; This is helix turn helix domain found in alpha helical region of Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive. Pssm-ID: 436593 Cd Length: 61 Bit Score: 124.19 E-value: 1.40e-35
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Name | Accession | Description | Interval | E-value | |||
RuBisCo_chap_C | pfam18087 | Rubisco Assembly chaperone C-terminal domain; This is the C-terminal domain, also known as the ... |
214-351 | 2.82e-71 | |||
Rubisco Assembly chaperone C-terminal domain; This is the C-terminal domain, also known as the beta domain, of Rubsico Assembly Chaperone protein (Raf1). Raf1 is necessary for rubisco to catalyze the rate-limiting step of carbon fixation through carboxylating the five-carbon sugar substrate ribulose-1,5-bisphosphate. The beta domains primary function is dimerization, which is critical for Raf1 to achieve the necessary avidity for complex formation with RbcL (the large complex sub-unbit of Rubsico) assembly intermediates. The beta domain is also involved, to a small extent, in binding to RbcL with use of the lustiness near the beta domain's conserved top surface. Pssm-ID: 436262 Cd Length: 138 Bit Score: 218.57 E-value: 2.82e-71
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Raf1_N | pfam18578 | Rubisco accumulation factor 1 alpha helical domain; This is the N-terminal alpha helical ... |
95-200 | 1.25e-58 | |||
Rubisco accumulation factor 1 alpha helical domain; This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive. Pssm-ID: 436592 Cd Length: 106 Bit Score: 184.98 E-value: 1.25e-58
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Raf1_HTH | pfam18579 | Rubisco accumulation factor 1 helix turn helix domain; This is helix turn helix domain found ... |
23-83 | 1.40e-35 | |||
Rubisco accumulation factor 1 helix turn helix domain; This is helix turn helix domain found in alpha helical region of Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive. Pssm-ID: 436593 Cd Length: 61 Bit Score: 124.19 E-value: 1.40e-35
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Blast search parameters | ||||
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