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Conserved domains on  [gi|1906170298|ref|WP_188944760|]
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hypothetical protein [Nakamurella endophytica]

Protein Classification

YdbT family protein( domain architecture ID 706656)

YdbT family protein, similar to Bacillus subtilis UPF0699 transmembrane protein YdbT, may contain a Pleckstrin Homology (PH) domain

PubMed:  15493994
SCOP:  3000134

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdbT super family cl28701
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 32-120 2.64e-04

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


The actual alignment was detected with superfamily member COG3428:

Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 40.46  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1906170298  32 RMRALALVLLVAFDALMVWLAVFSLTKLATGPSPGLAVFVGVVALLMTWALWLL---YRTRTVVTPDTVVLRYGFF--PT 106
Cdd:COG3428     7 RLHPLSILVRLLKALALLLPVLLLLLAGVGAGGGLLWVLLIALVLLLLLLLVSYlrwRTTRYRITDDRLIVRSGVLsrKR 86

                          90
                  ....*....|....
gi 1906170298 107 VRVPRDRITGVEVR 120
Cdd:COG3428    87 REIPLDRIQSVDVS 100
 
Name Accession Description Interval E-value
YdbT COG3428
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 32-120 2.64e-04

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 40.46  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1906170298  32 RMRALALVLLVAFDALMVWLAVFSLTKLATGPSPGLAVFVGVVALLMTWALWLL---YRTRTVVTPDTVVLRYGFF--PT 106
Cdd:COG3428     7 RLHPLSILVRLLKALALLLPVLLLLLAGVGAGGGLLWVLLIALVLLLLLLLVSYlrwRTTRYRITDDRLIVRSGVLsrKR 86

                          90
                  ....*....|....
gi 1906170298 107 VRVPRDRITGVEVR 120
Cdd:COG3428    87 REIPLDRIQSVDVS 100
 
Name Accession Description Interval E-value
YdbT COG3428
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 32-120 2.64e-04

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 40.46  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1906170298  32 RMRALALVLLVAFDALMVWLAVFSLTKLATGPSPGLAVFVGVVALLMTWALWLL---YRTRTVVTPDTVVLRYGFF--PT 106
Cdd:COG3428     7 RLHPLSILVRLLKALALLLPVLLLLLAGVGAGGGLLWVLLIALVLLLLLLLVSYlrwRTTRYRITDDRLIVRSGVLsrKR 86

                          90
                  ....*....|....
gi 1906170298 107 VRVPRDRITGVEVR 120
Cdd:COG3428    87 REIPLDRIQSVDVS 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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