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Conserved domains on  [gi|1897361487|ref|WP_187148496|]
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lipopolysaccharide assembly protein LapB [Shewanella piezotolerans]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 69-339 2.96e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 108.28  E-value: 2.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  69 LMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQ 148
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 149 YREARIHLTKAIELDQKRlasvsvsrmignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNL 228
Cdd:COG2956    92 LDRAEELLEKLLELDPDD---------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 229 GYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME----PADALNDLGYFLMLEGKYQQ 304
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEqdpdYLPALPRLAELYEKLGDPEE 230

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1897361487 305 AIELFERAIDTSPSY--------FEQAQKNLKRAKAELSDEFR 339
Cdd:COG2956   231 ALELLRKALELDPSDdlllaladLLERKEGLEAALALLERQLR 273
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 69-339 2.96e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 108.28  E-value: 2.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  69 LMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQ 148
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 149 YREARIHLTKAIELDQKRlasvsvsrmignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNL 228
Cdd:COG2956    92 LDRAEELLEKLLELDPDD---------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 229 GYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME----PADALNDLGYFLMLEGKYQQ 304
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEqdpdYLPALPRLAELYEKLGDPEE 230

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1897361487 305 AIELFERAIDTSPSY--------FEQAQKNLKRAKAELSDEFR 339
Cdd:COG2956   231 ALELLRKALELDPSDdlllaladLLERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 79-317 1.00e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 84.36  E-value: 1.00e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  79 GNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTK 158
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 159 AIELdqkrlasvsvsrmignlhVPDrdSPARVYnAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGEL 238
Cdd:TIGR02917 253 LLKK------------------APN--SPLAHY-LKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNL 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 239 TSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAMEPAD----ALNDLGYFLMLEGKYQQAIELFERAID 314
Cdd:TIGR02917 312 EQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPddpaALSLLGEAYLALGDFEKAAEYLAKATE 391


                  ...
gi 1897361487 315 TSP 317
Cdd:TIGR02917 392 LDP 394
TPR_1 pfam00515
Tetratricopeptide repeat;
286-319 2.20e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 2.20e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1897361487 286 ADALNDLGYFLMLEGKYQQAIELFERAIDTSPSY 319
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 231-336 2.69e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 2.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 231 SYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAMEPAdalNDLGY--FL----MLEGK--- 301
Cdd:cd24142     9 ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELD---PDGGYekYLylgqLSGGEeal 85

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1897361487 302 --YQQAIELFERAIDTSPSYFEQAQKNLKRAKAELSD 336
Cdd:cd24142    86 qyYEKGIEILEEELQALQAASAEAEEEAEELKRKLSS 122
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 236-319 7.72e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 41.61  E-value: 7.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  236 GELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQA--MEP--------ADALNDLGYFLML------- 298
Cdd:PRK11447   283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAlaLDPhssnrdkwESLLKVNRYWLLIqqgdaal 362

                           90       100
                   ....*....|....*....|....*....
gi 1897361487  299 --------EGKYQQAielfeRAIDTSPSY 319
Cdd:PRK11447   363 kannlaqaERLYQQA-----RQVDNTDSY 386
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 286-319 9.07e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 9.07e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1897361487  286 ADALNDLGYFLMLEGKYQQAIELFERAIDTSPSY 319
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 69-339 2.96e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 108.28  E-value: 2.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  69 LMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQ 148
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 149 YREARIHLTKAIELDQKRlasvsvsrmignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNL 228
Cdd:COG2956    92 LDRAEELLEKLLELDPDD---------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 229 GYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME----PADALNDLGYFLMLEGKYQQ 304
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEqdpdYLPALPRLAELYEKLGDPEE 230

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1897361487 305 AIELFERAIDTSPSY--------FEQAQKNLKRAKAELSDEFR 339
Cdd:COG2956   231 ALELLRKALELDPSDdlllaladLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
92-337 1.01e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.07  E-value: 1.01e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  92 LDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDQKRlasvs 171
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 172 vsrmignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIRE 251
Cdd:COG0457    76 ----------------AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 252 DQNLDRAWTNLGLVYVRKGLYKRALATFEQAMEPADALNDLGYFLMLEGKYQQAIELFERAIDTSPSYFEQAQKNLKRAK 331
Cdd:COG0457   140 DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219


                  ....*.
gi 1897361487 332 AELSDE 337
Cdd:COG0457   220 AELLLL 225
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
126-341 2.11e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 94.30  E-value: 2.11e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 126 LALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDQkrlasvsvsrmignlhvpdrdSPARVYNAIAILDDVQNDHE 205
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP---------------------DDAEALYNLGLAYLRLGRYE 59

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 206 SARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME- 284
Cdd:COG0457    60 EALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEl 139

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 285 ---PADALNDLGYFLMLEGKYQQAIELFERAIDTSPSYFEQAQKNLKRAKAELSDEFRHA 341
Cdd:COG0457   140 dpdDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 99-337 4.80e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.03  E-value: 4.80e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  99 AETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDQKRlasvsvsrmign 178
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR------------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 179 lhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRA 258
Cdd:COG2956    76 ---------AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 259 WTNLGLVYVRKGLYKRALATFEQAME----PADALNDLGYFLMLEGKYQQAIELFERAIDTSPSYFEqAQKNLKRAKAEL 334
Cdd:COG2956   147 YCELAELYLEQGDYDEAIEALEKALKldpdCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP-ALPRLAELYEKL 225


                  ...
gi 1897361487 335 SDE 337
Cdd:COG2956   226 GDP 228
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 201-321 1.26e-20

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 92.75  E-value: 1.26e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 201 QNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFE 280
Cdd:COG3914    91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1897361487 281 QAMEP----ADALNDLGYFLMLEGKYQQAIELFERAIDTSPSYFE 321
Cdd:COG3914   171 RALELdpdnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 62-313 3.13e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 89.02  E-value: 3.13e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  62 PKTEADALMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGV 141
Cdd:COG2956    39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 142 VSMDKRQYREARIHLTKAIELDQKrlasvsvsrmignlhvpdrdsPARVYNAIAILDDVQNDHESARKYFRLLLELQPHS 221
Cdd:COG2956   119 IYEQEGDWEKAIEVLERLLKLGPE---------------------NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 222 AILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME---PADALNDLGYFLML 298
Cdd:COG2956   178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEldpSDDLLLALADLLER 257

                         250
                  ....*....|....*
gi 1897361487 299 EGKYQQAIELFERAI 313
Cdd:COG2956   258 KEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
76-314 1.18e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 1.18e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  76 EQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIH 155
Cdd:COG0457    19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALED 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 156 LTKAIELDQKRlasvsvsrmignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLT 235
Cdd:COG0457    99 YDKALELDPDD---------------------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1897361487 236 GELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAMEPADALNDLGYFLMLEGKYQQAIELFERAID 314
Cdd:COG0457   158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 33-266 3.81e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 85.43  E-value: 3.81e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  33 EEPQEIKAPDRQDLLDAGALSSITSDFEAPKTEADALMKAskeeqsGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMR 112
Cdd:COG3914    52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL------GRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 113 GNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDqkrlasvsvsrmignlhvPDRdspARVYN 192
Cdd:COG3914   126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD------------------PDN---AEALN 184

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1897361487 193 AIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQaIREDQNLDRAWTNLGLVY 266
Cdd:COG3914   185 NLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL-LAALARGPSELSPFALLY 257
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 79-317 1.00e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 84.36  E-value: 1.00e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  79 GNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTK 158
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 159 AIELdqkrlasvsvsrmignlhVPDrdSPARVYnAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGEL 238
Cdd:TIGR02917 253 LLKK------------------APN--SPLAHY-LKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNL 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 239 TSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAMEPAD----ALNDLGYFLMLEGKYQQAIELFERAID 314
Cdd:TIGR02917 312 EQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPddpaALSLLGEAYLALGDFEKAAEYLAKATE 391


                  ...
gi 1897361487 315 TSP 317
Cdd:TIGR02917 392 LDP 394
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 188-319 1.01e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 78.70  E-value: 1.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 188 ARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYV 267
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1897361487 268 RKGLYKRALATFEQAM----EPADALNDLGYFLMLEGKYQQAIELFERAIDTSPSY 319
Cdd:COG4783    84 KAGDYDEALALLEKALkldpEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
36-216 4.02e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 76.11  E-value: 4.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  36 QEIKAPDRQDLLDAGALSSITSDFEAPKTEADALMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNP 115
Cdd:COG4785    44 LALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDY 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 116 EIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDQKrLASVSVSRMIGNLHVPDRDSPARVYNAIA 195
Cdd:COG4785   124 DAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN-DPERALWLYLAERKLDPEKALALLLEDWA 202

                         170       180
                  ....*....|....*....|.
gi 1897361487 196 ILDDVQNDHESARKYFRLLLE 216
Cdd:COG4785   203 TAYLLQGDTEEARELFKLALA 223
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-336 2.53e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 73.96  E-value: 2.53e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  58 DFEAPKTEADALMKASKEE------------QSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEA 125
Cdd:TIGR02917 242 EFEEAEKHADALLKKAPNSplahylkalvdfQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQI 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 126 LALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDQkrlasvsvsrmignlhvpdRDSPARVYNAIAILDdvQNDHE 205
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-------------------DDPAALSLLGEAYLA--LGDFE 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 206 SARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFE--QAM 283
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKklEKK 460

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1897361487 284 EPADAL--NDLGYFLMLEGKYQQAIELFERAIDTSPSYFEQA---------QKNLKRAKAELSD 336
Cdd:TIGR02917 461 QPDNASlhNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAanlaridiqEGNPDDAIQRFEK 524
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 124-284 4.74e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 4.74e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 124 EALALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDqkrlasvsvsrmignlhvPDRdspARVYNAIAILDDVQND 203
Cdd:COG3914    69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALN------------------PDN---AEALFNLGNLLLALGR 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 204 HESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAM 283
Cdd:COG3914   128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207


                  .
gi 1897361487 284 E 284
Cdd:COG3914   208 E 208
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 215-330 9.41e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 64.64  E-value: 9.41e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 215 LELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME----PADALN 290
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAldpdNPEALY 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1897361487 291 DLGYFLMLEGKYQQAIELFERAIDTSP--SYFEQAQKNLKRA 330
Cdd:COG4235    90 LLGLAAFQQGDYAEAIAAWQKLLALLPadAPARLLEASIAEA 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 228-336 2.50e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 2.50e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 228 LGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME----PADALNDLGYFLMLEGKYQ 303
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEldpdEPEARLNLGLALLKAGDYD 89

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1897361487 304 QAIELFERAIDTSPSYFEqAQKNLKRAKAELSD 336
Cdd:COG4783    90 EALALLEKALKLDPEHPE-AYLRLARAYRALGR 121
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 136-284 2.96e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.83  E-value: 2.96e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 136 HADLGVVSMDKRQYREARIHLTKAIELDQKRLASVSVSRMIGNLHVPDRDSPARVYNAIAILDDVQNDHESARKYFRLLL 215
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1897361487 216 ELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME 284
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 69-179 4.20e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 62.72  E-value: 4.20e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  69 LMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQ 148
Cdd:COG4235    21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1897361487 149 YREARIHLTKAIELDQKRLASVSVSRMIGNL 179
Cdd:COG4235   101 YAEAIAAWQKLLALLPADAPARLLEASIAEA 131
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 62-317 6.55e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 66.65  E-value: 6.55e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  62 PKTEADALMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGV 141
Cdd:TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 142 VSMDKRQYREARIHLTKAIELD------QKRLASV-----------SVSRMIGNLHVPDrdspARVYNAIAILDDVQNDH 204
Cdd:TIGR02917 644 AYAVMKNYAKAITSLKRALELKpdnteaQIGLAQLllaakrtesakKIAKSLQKQHPKA----ALGFELEGDLYLRQKDY 719

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 205 ESARKYFRLLLELQPHSAILIsNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME 284
Cdd:TIGR02917 720 PAAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1897361487 285 PAD----ALNDLGYfLMLEGKYQQAIELFERAIDTSP 317
Cdd:TIGR02917 799 KAPdnavVLNNLAW-LYLELKDPRALEYAERALKLAP 834
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
188-330 7.61e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 7.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 188 ARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYV 267
Cdd:COG4785    73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1897361487 268 RKGLYKRALATFEQAME--PADALNDL-GYFLMLEGKYQQAIELFERAIDTSPSY---FEQAQKNLKRA 330
Cdd:COG4785   153 YLGRYELAIADLEKALEldPNDPERALwLYLAERKLDPEKALALLLEDWATAYLLqgdTEEARELFKLA 221
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 136-327 1.02e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 1.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 136 HADLGVVSMDKRQYREARIHLTKAIELDQKRLASVSVSRMIGNLHVPDRDSPARVYNAIAILDDVQNDHESARKYFRLLL 215
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 216 ELQPHSAilisnlgysyylTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME--P--ADALND 291
Cdd:COG3914    84 AALLLQA------------LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAlnPdfAEAYLN 151

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1897361487 292 LGYFLMLEGKYQQAIELFERAIDTSPSYFEqAQKNL 327
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDPDNAE-ALNNL 186
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 78-318 1.53e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.49  E-value: 1.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  78 SGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLT 157
Cdd:TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 158 KAIELDQKRLA-----------------SVSVSRMIGNLHvpdRDSPArvynAIAILDDVQ---NDHESARKYFRLLLEL 217
Cdd:TIGR02917 558 KAAELNPQEIEpalalaqyylgkgqlkkALAILNEAADAA---PDSPE----AWLMLGRAQlaaGDLNKAVSSFKKLLAL 630

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 218 QPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFE--QAMEPADALND--LG 293
Cdd:TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKslQKQHPKAALGFelEG 710

                         250       260
                  ....*....|....*....|....*
gi 1897361487 294 YFLMLEGKYQQAIELFERAIDTSPS 318
Cdd:TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPS 735
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 96-254 1.69e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 1.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  96 AKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDQKRlasvsvsrm 175
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE--------- 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1897361487 176 ignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQN 254
Cdd:COG4783    72 ------------PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 135-317 2.39e-11

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 62.74  E-value: 2.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 135 VHADLGVVSMDKRQYREARIHLTKAIELDQKRlasvsvsrmignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLL 214
Cdd:TIGR02521  33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDD---------------------YLAYLALALYYQQLGELEKAEDSFRRA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 215 LELQPHSAILISNLGYSYYLTGELTSAERYLRQAIrEDQNLD---RAWTNLGLVYVRKGLYKRALATFEQAME----PAD 287
Cdd:TIGR02521  92 LTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI-EDPLYPqpaRSLENAGLCALKAGDFDKAEKYLTRALQidpqRPE 170

                         170       180       190
                  ....*....|....*....|....*....|
gi 1897361487 288 ALNDLGYFLMLEGKYQQAIELFERAIDTSP 317
Cdd:TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQTYN 200
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
232-318 3.86e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 59.03  E-value: 3.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 232 YYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALAtFEQAME----PADALNDLGYFLMLEGKYQQAIE 307
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKldpnNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|.
gi 1897361487 308 LFERAIDTSPS 318
Cdd:COG3063    81 YLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 83-222 6.00e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.25  E-value: 6.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  83 KALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIEL 162
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 163 DqkrlasvsvsrmignlhvPDrDSPARVYNAIAILDdvQNDHESARKYFRLLLELQPHSA 222
Cdd:COG4235    81 D------------------PD-NPEALYLLGLAAFQ--QGDYAEAIAAWQKLLALLPADA 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
76-168 1.79e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.10  E-value: 1.79e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  76 EQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAfRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIH 155
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                          90
                  ....*....|...
gi 1897361487 156 LTKAIELDQKRLA 168
Cdd:COG3063    82 LERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
180-334 2.01e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.93  E-value: 2.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 180 HVPDRDSPARVYNAIAILDDVQNDHESARKYFRLLLELqPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAW 259
Cdd:COG4785    32 AAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAY 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 260 TNLGLVYVRKGLYKRALATFEQAME--P--ADALNDLGYFLMLEGKYQQAIELFERAIDTSPS--------YFEQAQKNL 327
Cdd:COG4785   111 NNRGLAYLLLGDYDAALEDFDRALEldPdyAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlYLAERKLDP 190


                  ....*..
gi 1897361487 328 KRAKAEL 334
Cdd:COG4785   191 EKALALL 197
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
201-284 2.08e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 56.72  E-value: 2.08e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 201 QNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYlRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFE 280
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83


                  ....
gi 1897361487 281 QAME 284
Cdd:COG3063    84 RALE 87
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 50-292 2.13e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 2.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  50 GALSSITSDFEA-PKTEADALMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALAL 128
Cdd:TIGR00990 349 EALADLSKSIELdPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 129 DPNLIMVHADLGVVsmdkrQYREARIHLTKAIeldqkrlasvsVSRMIGNL-HVPDrdsparVYNAIAILDDVQNDHESA 207
Cdd:TIGR00990 429 DPDFIFSHIQLGVT-----QYKEGSIASSMAT-----------FRRCKKNFpEAPD------VYNYYGELLLDQNKFDEA 486

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 208 RKYFRLLLELQ----PHSAILISNLGYSYYLT---GELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFE 280
Cdd:TIGR00990 487 IEKFDTAIELEketkPMYMNVLPLINKALALFqwkQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566

                         250
                  ....*....|..
gi 1897361487 281 QAMEPADALNDL 292
Cdd:TIGR00990 567 RAAELARTEGEL 578
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 61-336 2.17e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.02  E-value: 2.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  61 APKTEADALMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLG 140
Cdd:TIGR02917 325 APNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 141 VVSMDKRQYREARIHLTKAIELDQKrLASVSVSRMIGNLHVPDRDSP--------------ARVYNAIAILDDVQNDHES 206
Cdd:TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKAlaaakklekkqpdnASLHNLLGAIYLGKGDLAK 483

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 207 ARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME-- 284
Cdd:TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEln 563

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1897361487 285 PAD---ALNdLGYFLMLEGKYQQAIELFERAIDT---SPSYFE------QAQKNLKRAKAELSD 336
Cdd:TIGR02917 564 PQEiepALA-LAQYYLGKGQLKKALAILNEAADAapdSPEAWLmlgraqLAAGDLNKAVSSFKK 626
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 201-288 3.76e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.32  E-value: 3.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 201 QNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFE 280
Cdd:COG4235    30 LGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQ 109

                          90
                  ....*....|
gi 1897361487 281 QAME--PADA 288
Cdd:COG4235   110 KLLAllPADA 119
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 188-317 2.14e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.74  E-value: 2.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 188 ARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYV 267
Cdd:COG5010    20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1897361487 268 RKGLYKRALATFEQAME----PADALNDLGYFLMLEGKYQQAIELFERAIDTSP 317
Cdd:COG5010   100 RSGDKDEAKEYYEKALAlspdNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 241-321 2.42e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 2.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 241 AERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME----PADALNDLGYFLMLEGKYQQAIELFERAIDTS 316
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRldpdNADALLDLAEALLAAGDTEEAEELLERALALD 81


                  ....*
gi 1897361487 317 PSYFE 321
Cdd:COG4235    82 PDNPE 86
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 69-221 6.49e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 6.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  69 LMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQ 148
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1897361487 149 YREARIHLTKAIELDQKRlasvsvsrmignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHS 221
Cdd:COG4783    88 YDEALALLEKALKLDPEH---------------------PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 77-163 1.87e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 1.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  77 QSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHL 156
Cdd:COG5010    66 KLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAAL 145


                  ....*..
gi 1897361487 157 TKAIELD 163
Cdd:COG5010   146 QRALGTS 152
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 230-330 2.62e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.53  E-value: 2.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 230 YSYYLTGELTSAERYLRQAIR---EDQNLDRAWTNLGLVYVRKGLYKRALATFEQAMEP-------ADALNDLGYFLMLE 299
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdspkaPDALLKLGLSYLEL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1897361487 300 GKYQQAIELFERAIDTSP--SYFEQAQKNLKRA 330
Cdd:COG1729    81 GDYDKARATLEELIKKYPdsEAAKEARARLARL 113
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 60-176 2.78e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.27  E-value: 2.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  60 EAPKTEADALMKASKEEQSGNLEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADL 139
Cdd:COG2956   139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1897361487 140 GVVSMDKRQYREARIHLTKAIELDQKRLASVSVSRMI 176
Cdd:COG2956   219 AELYEKLGDPEEALELLRKALELDPSDDLLLALADLL 255
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 116-314 1.16e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.98  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 116 EIAFRAYNEAL---ALDPNLIMVHADLGVVSMDKRQYREARIHLTKAIELDQkrlasvsvsrmignlhvpdRDSPARVYN 192
Cdd:TIGR00990 311 EEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-------------------RVTQSYIKR 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 193 AIAILDdvQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLY 272
Cdd:TIGR00990 372 ASMNLE--LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1897361487 273 KRALATFEQAM----EPADALNDLGYFLMLEGKYQQAIELFERAID 314
Cdd:TIGR00990 450 ASSMATFRRCKknfpEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
108-219 2.33e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 2.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 108 IHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREArIHLTKAIELDQKRlasvsvsrmignlhvpdrdsp 187
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNN--------------------- 58

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1897361487 188 ARVYNAIAILDDVQNDHESARKYFRLLLELQP 219
Cdd:COG3063    59 AEALLNLAELLLELGDYDEALAYLERALELDP 90
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 201-281 3.23e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.37  E-value: 3.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 201 QNDHESARKYFRLLLELQPHSAILIS---NLGYSYYLTGELTSAERYLRQAIR---EDQNLDRAWTNLGLVYVRKGLYKR 274
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGDYDK 85


                  ....*..
gi 1897361487 275 ALATFEQ 281
Cdd:COG1729    86 ARATLEE 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 207-336 5.63e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 5.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 207 ARKYFRLLLELQPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME-- 284
Cdd:COG5010     5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQld 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1897361487 285 --PADALNDLGYFLMLEGKYQQAIELFERAIDTSPSYfEQAQKNLKRAKAELSD 336
Cdd:COG5010    85 pnNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN-PNAYSNLAALLLSLGQ 137
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 81-252 1.04e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 1.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  81 LEKALYAYIQALDFNAKNAETFYHIGRIHTMRGNPEIAFRAYNEALALDPNLIMVHADLGVVSMDKRQYREARIHLTKAI 160
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 161 ELDQKRlasvsvsrmignlhvpdrdspARVYNAIAILDDVQNDHESARKYFRLLLELQPHSAILISNLGYSYYLTGELTS 240
Cdd:COG5010    82 QLDPNN---------------------PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140

                         170
                  ....*....|..
gi 1897361487 241 AERYLRQAIRED 252
Cdd:COG5010   141 AKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
265-336 5.46e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 5.46e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1897361487 265 VYVRKGLYKRALATFEQAME----PADALNDLGYFLMLEGKYQQAIElFERAIDTSPSYFEqAQKNLKRAKAELSD 336
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEldpdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAE-ALLNLAELLLELGD 74
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
144-257 5.57e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 5.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 144 MDKRQYREARIHLTKAIELDqkrlasvsvsrmignlhvPDRdspARVYNAIAILDDVQNDHESARKYFRLLlELQPHSAI 223
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELD------------------PDN---ADALNNLGLLLLEQGRYDEAIALEKAL-KLDPNNAE 60

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1897361487 224 LISNLGYSYYLTGELTSAERYLRQAIREDQNLDR 257
Cdd:COG3063    61 ALLNLAELLLELGDYDEALAYLERALELDPSALR 94
TPR_1 pfam00515
Tetratricopeptide repeat;
286-319 2.20e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 2.20e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1897361487 286 ADALNDLGYFLMLEGKYQQAIELFERAIDTSPSY 319
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 231-336 2.69e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 2.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 231 SYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAMEPAdalNDLGY--FL----MLEGK--- 301
Cdd:cd24142     9 ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELD---PDGGYekYLylgqLSGGEeal 85

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1897361487 302 --YQQAIELFERAIDTSPSYFEQAQKNLKRAKAELSD 336
Cdd:cd24142    86 qyYEKGIEILEEELQALQAASAEAEEEAEELKRKLSS 122
TPR_12 pfam13424
Tetratricopeptide repeat;
257-314 3.58e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 3.58e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 257 RAWTNLGLVYVRKGLYKRALATFEQAME------------PADALNDLGYFLMLEGKYQQAIELFERAID 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEiarrllgpdhplTATTLLNLGRLYLELGRYEEALELLERALA 73
TPR_12 pfam13424
Tetratricopeptide repeat;
222-284 4.15e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 4.15e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1897361487 222 AILISNLGYSYYLTGELTSAERYLRQAIR------EDQNLDRAWT--NLGLVYVRKGLYKRALATFEQAME 284
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEiarrllGPDHPLTATTllNLGRLYLELGRYEEALELLERALA 73
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 236-319 7.72e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 41.61  E-value: 7.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  236 GELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQA--MEP--------ADALNDLGYFLML------- 298
Cdd:PRK11447   283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAlaLDPhssnrdkwESLLKVNRYWLLIqqgdaal 362

                           90       100
                   ....*....|....*....|....*....
gi 1897361487  299 --------EGKYQQAielfeRAIDTSPSY 319
Cdd:PRK11447   363 kannlaqaERLYQQA-----RQVDNTDSY 386
ycf3 CHL00033
photosystem I assembly protein Ycf3
 201-328 8.59e-04

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 39.61  E-value: 8.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 201 QNDHESARkyfrllLELQPH--SAILIsNLGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGlykralat 278
Cdd:CHL00033   56 QNYYEAMR------LEIDPYdrSYILY-NIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG-------- 120

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1897361487 279 fEQAMEPADalndlgyFLMLEGKYQQAIELFERAIDTSPSYFEQAQKNLK 328
Cdd:CHL00033  121 -EQAIEQGD-------SEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 286-319 9.07e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 9.07e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1897361487  286 ADALNDLGYFLMLEGKYQQAIELFERAIDTSPSY 319
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 181-334 1.94e-03

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 39.07  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 181 VPDRDSPARVYNAIAILDDVQNDHESARKYFRLLLELQPHS-----AILisNLGYSYYLTGELTSAERYLRQAIR---ED 252
Cdd:TIGR03302  26 DPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSpyaeqAQL--DLAYAYYKSGDYAEAIAAADRFIRlhpNH 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487 253 QNLDRAwtnlglvyvrkgLYKRALATFEQaMEPADalNDLGYflmlegkYQQAIELFERAIDTSPS--YFEQAQKNLKRA 330
Cdd:TIGR03302 104 PDADYA------------YYLRGLSNYNQ-IDRVD--RDQTA-------AREAFEAFQELIRRYPNseYAPDAKKRMDYL 161


                  ....
gi 1897361487 331 KAEL 334
Cdd:TIGR03302 162 RNRL 165
TPR_11 pfam13414
TPR repeat;
77-109 2.24e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 2.24e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1897361487  77 QSGNLEKALYAYIQALDFNAKNAETFYHIGRIH 109
Cdd:pfam13414   6 EQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAY 38
TPR_11 pfam13414
TPR repeat;
229-270 2.89e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 2.89e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1897361487 229 GYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKG 270
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
COG3899 COG3899
Predicted ATPase [General function prediction only];
112-313 4.31e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 39.07  E-value: 4.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  112 RGNPEIAFRAYNEALALDP------NLIMVHADLGVVSMDKRQYREARIHLTKAIELDqkrlasvsVSRMIGNLHVPDRD 185
Cdd:COG3899    718 RGAYAEALRYLERALELLPpdpeeeYRLALLLELAEALYLAGRFEEAEALLERALAAR--------ALAALAALRHGNPP 789

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897361487  186 SPARVYNAIAILddVQNDHESARKYFRLLLEL------QPHSAILISNLGYSYYLTGELTSAERYLRQAIREDQNLDRAW 259
Cdd:COG3899    790 ASARAYANLGLL--LLGDYEEAYEFGELALALaerlgdRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAA 867

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1897361487  260 TNLGLVYVRKGLYKRALATFEQAMEPADALNDLGYFLMLEGKYQQAIELFERAI 313
Cdd:COG3899    868 LALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARL 921
TPR_1 pfam00515
Tetratricopeptide repeat;
99-131 5.16e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.32  E-value: 5.16e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1897361487  99 AETFYHIGRIHTMRGNPEIAFRAYNEALALDPN 131
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
Ycf37 COG5714
Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; ...
 224-284 6.09e-03

Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf37, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444424 [Multi-domain]  Cd Length: 176  Bit Score: 37.23  E-value: 6.09e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1897361487 224 LISN-LGYSYYLTGELTSAERYLRQAIREDQNLDRAWTNLGLVYVRKGLYKRALATFEQAME 284
Cdd:COG5714    92 LIYNaLGFAYFAQEQYDLAIRQYKEALKLKPDYVTALNNLGHAYEKKKLTAQALETYEEALK 153
TPR_12 pfam13424
Tetratricopeptide repeat;
188-250 6.42e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 6.42e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1897361487 188 ARVYNAIAILDDVQNDHESARKYFRLLLELQ--------PHSAILISNLGYSYYLTGELTSAERYLRQAIR 250
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALA 73
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 286-317 7.80e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 33.65  E-value: 7.80e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1897361487 286 ADALNDLGYFLMLEGKYQQAIELFERAIDTSP 317
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 99-131 8.89e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 8.89e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1897361487   99 AETFYHIGRIHTMRGNPEIAFRAYNEALALDPN 131
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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