|
Name |
Accession |
Description |
Interval |
E-value |
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
15-260 |
1.06e-77 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 243.39 E-value: 1.06e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGI 94
Cdd:COG1129 2 EPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGREERLPGplgslfrILDTKGMRKKAKEELTRLGISTlqDVTVPVENLSGGQRQAVAVA 174
Cdd:COG1129 82 AIIHQELNLVPNLSVAENIFLGREPRRGG-------LIDWRAMRRRARELLARLGLDI--DPDTPVGDLSVAQQQLVEIA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQSHTMTDA 254
Cdd:COG1129 153 RALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDEL 232
|
....*.
gi 1867925291 255 VAIMTG 260
Cdd:COG1129 233 VRLMVG 238
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
18-243 |
6.83e-62 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 191.87 E-value: 6.83e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGIETV 97
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQnlavspaldvasnlflgreerlpgplgslfrildtkgmrkkakeeltrLGISTLQDVTVpvenlsggqrqavavARAA 177
Cdd:cd03216 81 YQ------------------------------------------------LSVGERQMVEI---------------ARAL 97
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAAT 243
Cdd:cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
13-262 |
7.50e-56 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 186.77 E-value: 7.50e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 13 TREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH 92
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIETVYQNLAVSPALDVASNLFLGREERLPGplgslfrILDTKGMRKKAKEELTRLGISTlqDVTVPVENLSGGqrqava 172
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENIVLGLEPTKGG-------RLDRKAARARIRELSERYGLDV--DPDAKVEDLSVGeqqrve 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 173 varaaafGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQSHTMT 252
Cdd:COG3845 152 ilkalyrGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEE 231
|
250
....*....|
gi 1867925291 253 DAVAIMTGAA 262
Cdd:COG3845 232 ELAELMVGRE 241
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
15-243 |
2.66e-50 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 172.02 E-value: 2.66e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGI 94
Cdd:PRK11288 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGreeRLPGPLGslfrILDTKGMRKKAKEELTRLGISTlqDVTVPVENLSGGQRQAVAVA 174
Cdd:PRK11288 82 AIIYQELHLVPEMTVAENLYLG---QLPHKGG----IVNRRLLNYEAREQLEHLGVDI--DPDTPLKYLSIGQRQMVEIA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAAT 243
Cdd:PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
18-247 |
4.88e-49 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 161.84 E-value: 4.88e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGIETV 97
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNLFLGREERLPGPLGSLFRILDTKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQRQAVAVARAA 177
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD--RPAGELSYGQQRRLEIARAL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPD 228
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
15-260 |
4.97e-48 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 166.26 E-value: 4.97e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDT--GELFVSGQQVHFKRPQDARVH 92
Cdd:PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTyeGEIIFEGEELQASNIRDTERA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIETVYQNLAVSPALDVASNLFLGREerlPGPLGslfrILDTKGMRKKAKEELTRLGISTlqDVTVPVENLSGGQRQAVA 172
Cdd:PRK13549 83 GIAIIHQELALVKELSVLENIFLGNE---ITPGG----IMDYDAMYLRAQKLLAQLKLDI--NPATPVGNLGLGQQQLVE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 173 VARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQSHTMT 252
Cdd:PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED 233
|
....*...
gi 1867925291 253 DAVAIMTG 260
Cdd:PRK13549 234 DIITMMVG 241
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
15-239 |
2.73e-46 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 161.32 E-value: 2.73e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGI 94
Cdd:PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGREerlpgPLGSLFRIlDTKGMRKKAKEELTRLGIStlQDVTVPVENLSGGQRQAVAVA 174
Cdd:PRK10762 82 GIIHQELNLIPQLTIAENIFLGRE-----FVNRFGRI-DWKKMYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
15-232 |
3.62e-44 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 149.80 E-value: 3.62e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQD-ARvHG 93
Cdd:COG0411 2 DPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRiAR-LG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQNLAVSPALDVASNLFLGREERLP-GPLGSLFRIL----DTKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQr 168
Cdd:COG0411 81 IARTFQNPRLFPELTVLENVLVAAHARLGrGLLAALLRLPrarrEEREARERAEELLERVGLADRAD--EPAGNLSYGQq 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 169 qavavaraaafgsKVVVLDEPTAALGVRESNQVLQLVRDLRD-RGLPVILISHNMPHVFDVADRI 232
Cdd:COG0411 159 rrleiaralatepKLLLLDEPAAGLNPEETEELAELIRRLRDeRGITILLIEHDMDLVMGLADRI 223
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
21-260 |
4.11e-41 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 147.57 E-value: 4.11e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGIETVYQN 100
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 101 LAVSPALDVASNLFLGREerlpgPLGSLFriLDTKGMRKKAKEELTRLGISTlqDVTVPVENLSGGQRQAVAVARAAAFG 180
Cdd:PRK10982 82 LNLVLQRSVMDNMWLGRY-----PTKGMF--VDQDKMYRDTKAIFDELDIDI--DPRAKVATLSVSQMQMIEIAKAFSYN 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 181 SKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQSHTMTDAVAIMTG 260
Cdd:PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVG 232
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
18-247 |
5.07e-41 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 140.97 E-value: 5.07e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKR----------PQ 87
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPaevrrrigyvPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 88 DARVHGIETVYQNLAVspaldvasnlflgreerlpgpLGSLFRiLDTKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQ 167
Cdd:COG1131 81 EPALYPDLTVRENLRF---------------------FARLYG-LPRKEARERIDELLELFGLTDAAD--RKVGTLSGGM 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 168 RQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:COG1131 137 KQRLGLALALLHDPELLILDEPTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPD 216
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
15-260 |
5.16e-41 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 147.62 E-value: 5.16e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGI 94
Cdd:PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGreeRLPGPLGSLFRILDTKGMRKKAKEELTRLGISTlqDVTVPVENLSGGQRQAVAVA 174
Cdd:PRK09700 83 GIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV--DLDEKVANLSISHKQMLEIA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQSHTMTDA 254
Cdd:PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDI 237
|
....*.
gi 1867925291 255 VAIMTG 260
Cdd:PRK09700 238 VRLMVG 243
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-260 |
3.53e-39 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 142.27 E-value: 3.53e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDT--GELFVSGQQVHFKRPQDARVHGI 94
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEIYWSGSPLKASNIRDTERAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGREERLPGPlgslfrILDTKGMRKKAKEELTRLGISTLqDVTVPVENLSGGQRQAVAVA 174
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGG------RMAYNAMYLRAKNLLRELQLDAD-NVTRPVGDYGGGQQQLVEIA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQSHTMTDA 254
Cdd:TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDI 233
|
....*.
gi 1867925291 255 VAIMTG 260
Cdd:TIGR02633 234 ITMMVG 239
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
18-239 |
1.26e-37 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 130.21 E-value: 1.26e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARVHgIETV 97
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK-KEPEEVKRR-IGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNLFLgreerlpgplgslfrildTKGMRKKAKeeltrLGISTLQDvtvpvenlsggqrqavavaraa 177
Cdd:cd03230 79 PEEPSLYENLTVRENLKL------------------SGGMKQRLA-----LAQALLHD---------------------- 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 178 afgSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03230 114 ---PELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR 172
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
17-244 |
8.12e-37 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 135.69 E-value: 8.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDT--GELFVSGQQVHFKRPQDARVHGI 94
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDGEVCRFKDIRDSEALGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGREERLPGplgslfrILDTKGMRKKAKEELTRLGIStlQDVTVPVENLSGGQRQAVAVA 174
Cdd:NF040905 81 VIIHQELALIPYLSIAENIFLGNERAKRG-------VIDWNETNRRARELLAKVGLD--ESPDTLVTDIGVGKQQLVEIA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATI 244
Cdd:NF040905 152 KALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRTIETL 221
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
18-247 |
1.71e-36 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 128.99 E-value: 1.71e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTF-GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH-GI- 94
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKvGLv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ----------ETVYQNLAVSPAldvasNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVtvPVENLS 164
Cdd:COG1122 81 fqnpddqlfaPTVEEDVAFGPE-----NLGLPREE-----------------IRERVEEALELVGLEHLADR--PPHELS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 165 GGQrqavavaraaafgsK--------------VVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVAD 230
Cdd:COG1122 137 GGQ--------------KqrvaiagvlamepeVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELAD 202
|
250
....*....|....*..
gi 1867925291 231 RIHIQRLGKCAATITPQ 247
Cdd:COG1122 203 RVIVLDDGRIVADGTPR 219
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
33-239 |
6.95e-36 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 126.81 E-value: 6.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHgIETVYQN-----LAVSPAL 107
Cdd:cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK-VGLVFQNpddqfFGPTVEE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 108 DVAS---NLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSKVV 184
Cdd:cd03225 96 EVAFgleNLGLPEEE-----------------IEERVEEALELVGLEGLRDR--SPFTLSGGQKQRVAIAGVLAMDPDIL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 185 VLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
16-232 |
3.44e-34 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 123.63 E-value: 3.44e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTF-GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH-- 92
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRLrr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIETVYQNLAVSPALDVASNLFLGREERLPGpLGSLFRILdTKGMRKKAKEELTRLGIstLQDVTVPVENLSGGQRQAVa 172
Cdd:COG3638 81 RIGMIFQQFNLVPRLSVLTNVLAGRLGRTST-WRSLLGLF-PPEDRERALEALERVGL--ADKAYQRADQLSGGQQQRV- 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 173 varaaafG--------SKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:COG3638 156 -------AiaralvqePKLILADEPVASLDPKTARQVMDLLRRIaREDGITVVVNLHQVDLARRYADRI 217
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-264 |
5.33e-34 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 128.21 E-value: 5.33e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 3 TTEFEAPRTETREPILKARNLvkTFGRVVglDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH 82
Cdd:COG1129 242 EDLFPKRAAAPGEVVLEVEGL--SVGGVV--RDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 83 FKRPQDARVHGIetVY-----QNLAVSPALDVASNLFLGREERLpgplgSLFRILDTKGMRKKAKEELTRLGISTlQDVT 157
Cdd:COG1129 318 IRSPRDAIRAGI--AYvpedrKGEGLVLDLSIRENITLASLDRL-----SRGGLLDRRRERALAEEYIKRLRIKT-PSPE 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 158 VPVENLSGG-----------QRqavavaraaafGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVF 226
Cdd:COG1129 390 QPVGNLSGGnqqkvvlakwlAT-----------DPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIVISSELPELL 458
|
250 260 270
....*....|....*....|....*....|....*...
gi 1867925291 227 DVADRIHIQRLGKCAATITPQSHTMTDAVAIMTGAAKA 264
Cdd:COG1129 459 GLSDRILVMREGRIVGELDREEATEEAIMAAATGGAAA 496
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
8-247 |
5.75e-34 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 128.10 E-value: 5.75e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 8 APRTETREPILKARNLVKTF-----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH 82
Cdd:COG1123 251 APAAAAAEPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLT 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 83 FKRPQDARVHG--IETVYQN--LAVSPALDVASNLflgrEErlpgPLgSLFRILDTKGMRKKAKEELTRLGISTlQDVTV 158
Cdd:COG1123 331 KLSRRSLRELRrrVQMVFQDpySSLNPRMTVGDII----AE----PL-RLHGLLSRAERRERVAELLERVGLPP-DLADR 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 159 PVENLSGG------------QrqavavaraaafGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHV 225
Cdd:COG1123 401 YPHELSGGqrqrvaiaralaL------------EPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVV 468
|
250 260
....*....|....*....|..
gi 1867925291 226 FDVADRIHIQRLGKCAATITPQ 247
Cdd:COG1123 469 RYIADRVAVMYDGRIVEDGPTE 490
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
13-264 |
1.19e-33 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 127.47 E-value: 1.19e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 13 TREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH 92
Cdd:PRK15439 7 TAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIETVYQNLAVSPALDVASNLflgreerlpgplgsLFRILDTKGMRKKAKEELTRLGISTLQDVTVP---------VENL 163
Cdd:PRK15439 87 GIYLVPQEPLLFPNLSVKENI--------------LFGLPKRQASMQKMKQLLAALGCQLDLDSSAGslevadrqiVEIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 164 SGgqrqavavaraAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAAT 243
Cdd:PRK15439 153 RG-----------LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221
|
250 260
....*....|....*....|.
gi 1867925291 244 ITPQSHTMTDAVAIMTGAAKA 264
Cdd:PRK15439 222 GKTADLSTDDIIQAITPAARE 242
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
18-247 |
1.07e-32 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 119.58 E-value: 1.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARVHgIETV 97
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVR-KEPREARRQ-IGVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNL-FLGReerlpgplgsLFRILDtKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQRQAVAVARA 176
Cdd:COG4555 80 PDERGLYDRLTVRENIrYFAE----------LYGLFD-EELKKRIEELIELLGLEEFLD--RRVGELSTGMKKKVALARA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:COG4555 147 LVHDPKVLLLDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLD 217
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
18-232 |
1.68e-32 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 119.21 E-value: 1.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGR-VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARV--HGI 94
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQlrRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGREERLPgPLGSLFRILdTKGMRKKAKEELTRLGISTLqdVTVPVENLSGGQRQAVAVA 174
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRS-TWRSLFGLF-PKEEKQRALAALERVGLLDK--AYQRADQLSGGQQQRVAIA 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRInREEGITVIVSLHQVDLAREYADRI 215
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
13-247 |
5.40e-32 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 117.88 E-value: 5.40e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 13 TREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKR------P 86
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARrrigyvP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 87 QdarvhgIETVYQNLAVSpALDVASnlfLGREERLPgplgsLFRILdTKGMRKKAKEELTRLGISTLQDvtVPVENLSGG 166
Cdd:COG1121 82 Q------RAEVDWDFPIT-VRDVVL---MGRYGRRG-----LFRRP-SRADREAVDEALERVGLEDLAD--RPIGELSGG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 167 ------------QrqavavaraaafGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI-- 232
Cdd:COG1121 144 qqqrvllaralaQ------------DPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVll 211
|
250
....*....|....*...
gi 1867925291 233 ---HIQRLGKCAATITPQ 247
Cdd:COG1121 212 lnrGLVAHGPPEEVLTPE 229
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
17-239 |
3.10e-31 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 115.30 E-value: 3.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH 92
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 G--IETVYQN--LAVSPALDVASNLflgrEErlpgPLGSLFRILDTKGMRKKAKEELTRLGISTlqdvTV----PVEnLS 164
Cdd:cd03257 81 RkeIQMVFQDpmSSLNPRMTIGEQI----AE----PLRIHGKLSKKEARKEAVLLLLVGVGLPE----EVlnryPHE-LS 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 165 GGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRD-RGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEeLGLTLLFITHDLGVVAKIADRVAVMYAGK 223
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-232 |
6.65e-31 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 115.57 E-value: 6.65e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGR-----VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARV 91
Cdd:COG1101 1 MLELKNLSKTFNPgtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVT-KLPEYKRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 92 HGIETVYQN--LAVSPALDVASNLFL--GREERLPgplgslFRILDTKGMRKKAKEELTRLGIStLQD-VTVPVENLSGG 166
Cdd:COG1101 80 KYIGRVFQDpmMGTAPSMTIEENLALayRRGKRRG------LRRGLTKKRRELFRELLATLGLG-LENrLDTKVGLLSGG 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 167 QRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:COG1101 153 QRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIvEENNLTTLMVTHNMEQALDYGNRL 219
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
18-247 |
1.39e-30 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 113.37 E-value: 1.39e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFG--RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQdarvhgie 95
Cdd:cd03263 1 LQIRNLTKTYKkgTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKA-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 tVYQNLAVSPALDVASNLFLGREE-RLPGPLGSLFRildtKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQRQAVAVA 174
Cdd:cd03263 73 -ARQSLGYCPQFDALFDELTVREHlRFYARLKGLPK----SEIKEEVELLLRVLGLTDKAN--KRARTLSGGMKRKLSLA 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRdRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
17-247 |
1.71e-30 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 113.99 E-value: 1.71e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH-FKRPQDARVHGIe 95
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLAsLSRRELARRIAY- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 tVYQNLAVSPALDVASNLFLGreeRLP--GPLGSLfrildTKGMRKKAKEELTRLGISTLQDvtVPVENLSGGqrqavav 173
Cdd:COG1120 80 -VPQEPPAPFGLTVRELVALG---RYPhlGLFGRP-----SAEDREAVEEALERTGLEHLAD--RPVDELSGGerqrvli 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 174 araaafGSKVVVLDEPTAALGVResNQ--VLQLVRDL-RDRGLPVILISHNMPHVFDVADRI------HIQRLGKCAATI 244
Cdd:COG1120 149 aralaqEPPLLLLDEPTSHLDLA--HQleVLELLRRLaRERGRTVVMVLHDLNLAARYADRLvllkdgRIVAQGPPEEVL 226
|
...
gi 1867925291 245 TPQ 247
Cdd:COG1120 227 TPE 229
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
18-239 |
4.75e-30 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 111.60 E-value: 4.75e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfkrpQDARVHGIETV 97
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL-----DIAARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNLFLgreerlpgpLGSLfrildtKGMRKK-AKEE----LTRLGISTLQDvtVPVENLSGGQRQAVA 172
Cdd:cd03269 76 PEERGLYPKMKVIDQLVY---------LAQL------KGLKKEeARRRidewLERLELSEYAN--KRVEELSKGNQQKVQ 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 173 VARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
15-246 |
1.05e-29 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 112.01 E-value: 1.05e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGI 94
Cdd:PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGREERL-PGPLGSLFRildTKGMRKKAKEELTRLG-----ISTLQDVTVPVENLSGGQR 168
Cdd:PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLkTGLFSGLLK---TPAFRRAESEALDRAAtwlerVGLLEHANRQAGNLAYGQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 169 QAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGKCAATITP 246
Cdd:PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
22-232 |
1.36e-28 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 108.00 E-value: 1.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 22 NLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGIETVYQNL 101
Cdd:cd03235 4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 102 AVSpALDVASnlfLGREERLpgplgSLFRILDTKGmRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGS 181
Cdd:cd03235 84 PIS-VRDVVL---MGLYGHK-----GLFRRLSKAD-KAKVDEALERVGLSELADR--QIGELSGGQQQRVLLARALVQDP 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 182 KVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRV 202
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
21-232 |
1.67e-28 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 108.36 E-value: 1.67e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH---FKRPQDARVH-GIet 96
Cdd:cd03261 4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISglsEAELYRLRRRmGM-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNL-FLGREerlpgplgslFRILDTKGMRKKAKEELTRLGISTLQDVtVPVEnLSGGQRQAVAVAR 175
Cdd:cd03261 82 LFQSGALFDSLTVFENVaFPLRE----------HTRLSEEEIREIVLEKLEAVGLRGAEDL-YPAE-LSGGMKKRVALAR 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 176 AAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRI 232
Cdd:cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRI 207
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
15-247 |
2.03e-28 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 112.69 E-value: 2.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTF--GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAeVPD----TGELFVSGQQVhFKRPQD 88
Cdd:COG1123 2 TPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGL-LPHggriSGEVLLDGRDL-LELSEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 89 ARVHGIETVYQNLA-----VSPALDVASNLFLGReerlpgplgslfriLDTKGMRKKAKEELTRLGISTLQDVtvPVENL 163
Cdd:COG1123 80 LRGRRIGMVFQDPMtqlnpVTVGDQIAEALENLG--------------LSRAEARARVLELLEAVGLERRLDR--YPHQL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 164 SGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:COG1123 144 SGGQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVE 223
|
....*
gi 1867925291 243 TITPQ 247
Cdd:COG1123 224 DGPPE 228
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
20-246 |
3.56e-28 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 107.07 E-value: 3.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 20 ARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhFKRPQDARvHGIETVYQ 99
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPREVR-RRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 100 NLAVSPALDVASNLFL-GREERLPGplgslfrildtKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQRQAVAVARAAA 178
Cdd:cd03265 81 DLSVDDELTGWENLYIhARLYGVPG-----------AERRERIDELLDFVGLLEAAD--RLVKTYSGGMRRRLEIARSLV 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 179 FGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITP 246
Cdd:cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
18-232 |
4.99e-28 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 106.46 E-value: 4.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH-GIET 96
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRqKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNLFLGreerlpgplgslfrILDTKGMRKK-----AKEELTRLGISTLQDVtVPVEnLSGGQRQAV 171
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLA--------------PIKVKGMSKAeaeerALELLEKVGLADKADA-YPAQ-LSGGQQQRV 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 172 AVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRV 205
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
15-232 |
5.80e-28 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 106.67 E-value: 5.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFG----RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDAR 90
Cdd:COG1136 2 SPLLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDIS-SLSEREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 91 VH------GIetVYQNLAVSPALDVASNLFLgreerlpgPLgsLFRILDTKGMRKKAKEELTRLGISTLQDVTvPVEnLS 164
Cdd:COG1136 81 ARlrrrhiGF--VFQFFNLLPELTALENVAL--------PL--LLAGVSRKERRERARELLERVGLGDRLDHR-PSQ-LS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 165 GGQRQAvavaraaafgskV-----------VVL-DEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNmPHVFDVADR 231
Cdd:COG1136 147 GGQQQR------------VaiaralvnrpkLILaDEPTGNLDSKTGEEVLELLRELnRELGTTIVMVTHD-PELAARADR 213
|
.
gi 1867925291 232 I 232
Cdd:COG1136 214 V 214
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
18-239 |
6.21e-28 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 106.45 E-value: 6.21e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARvhGIETV 97
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT-GVPPERR--NIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNLFLGREERLpgplgslfriLDTKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQRQAVAVARAA 177
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGLKLRG----------VPKAEIRARVRELLELVGLEGLLN--RYPHELSGGQQQRVALARAL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGR 208
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-232 |
6.35e-28 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 108.27 E-value: 6.35e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQ------DAR 90
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRrigylpEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 91 vhGIetvYQNLAVSPALdvasnLFLGreeRLPGplgslfriLDTKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQrqa 170
Cdd:COG4152 81 --GL---YPKMKVGEQL-----VYLA---RLKG--------LSKAEAKRRADEWLERLGLGDRAN--KKVEELSKGN--- 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 171 vavaraaafGSKV------------VVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:COG4152 135 ---------QQKVqliaallhdpelLILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRI 199
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
17-232 |
8.02e-28 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 107.00 E-value: 8.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGR-VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARV--HG 93
Cdd:TIGR02315 1 MLEVENLSKVYPNgKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKlrRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQNLAVSPALDVASNLFLGREERLPGPLGSLFRIldTKGMRKKAKEELTRLGISTLQDVTVpvENLSGGQRQAVAV 173
Cdd:TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF--SEEDKERALSALERVGLADKAYQRA--DQLSGGQQQRVAI 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 174 ARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRInKEDGITVIINLHQVDLAKKYADRI 216
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
33-191 |
1.07e-27 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 103.88 E-value: 1.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHgIETVYQNLAVSPALDVASN 112
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE-IGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGReerlpgplgsLFRILDTKGMRKKAKEELTRLGISTLQD--VTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPT 190
Cdd:pfam00005 80 LRLGL----------LLKGLSKREKDARAEEALEKLGLGDLADrpVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
.
gi 1867925291 191 A 191
Cdd:pfam00005 150 A 150
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
18-232 |
1.11e-27 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 105.65 E-value: 1.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFG----RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH---FKRPQDAR 90
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISklsEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 91 VHGIETVYQNLAVSPALDVASNLflgreeRLPGPLGSLFRildtKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQRQA 170
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENV------ELPLLLAGVPK----KERRERAEELLERVGLGDRLN--HYPSELSGGQQQR 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 171 VAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNmPHVFDVADRI 232
Cdd:cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHD-PELAEYADRI 210
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
16-236 |
2.95e-27 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 104.48 E-value: 2.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGIe 95
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAY- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 tVYQNLAVSPALDVASNL-FLGreeRLPGPLGSLFRILDTkgmrkkakeeLTRLGISTLQDvtVPVENLSGGQRQAVAVA 174
Cdd:COG4133 80 -LGHADGLKPELTVRENLrFWA---ALYGLRADREAIDEA----------LEAVGLAGLAD--LPVRQLSAGQKRRVALA 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRIHIQR 236
Cdd:COG4133 144 RLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGAVLLTTHQ-PLELAAARVLDLGD 204
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
13-232 |
3.60e-27 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 105.06 E-value: 3.60e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 13 TREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH-FKRPQDARV 91
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITgLSEKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 92 H---GI----------ETVYQNLAvspaldvasnLFLgREerlpgplgslFRILDTKGMRKKAKEELTRLGISTLQDvTV 158
Cdd:COG1127 81 RrriGMlfqggalfdsLTVFENVA----------FPL-RE----------HTDLSEAEIRELVLEKLELVGLPGAAD-KM 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 159 PVEnLSGGQRqavavaraaafgsK-------------VVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPH 224
Cdd:COG1127 139 PSE-LSGGMR-------------KrvalaralaldpeILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDS 204
|
....*...
gi 1867925291 225 VFDVADRI 232
Cdd:COG1127 205 AFAIADRV 212
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
17-232 |
4.88e-26 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 101.99 E-value: 4.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH---G 93
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDINKLRrkvG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IetVYQNLAVSPALDVASNLFLGreerlpgPLgslfrilDTKGM-----RKKAKEELTRLGISTLQDVtVPVEnLSGGQR 168
Cdd:COG1126 81 M--VFQQFNLFPHLTVLENVTLA-------PI-------KVKKMskaeaEERAMELLERVGLADKADA-YPAQ-LSGGQQ 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 169 QAvavaraaafgsKVVVLDEPTAALG---VREsnqVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:COG1126 143 QRvaiaralamepKVMLFDEPTSALDpelVGE---VLDVMRDLAKEGMTMVVVTHEMGFAREVADRV 206
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
18-255 |
8.41e-26 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 101.73 E-value: 8.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQD-ARVHGIet 96
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWElARRRAV-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVS---PALDVASnlfLGreeRLPGPLGslfrildTKGMRKKAKEELTRLGISTLQDVTVPveNLSGG------- 166
Cdd:COG4559 80 LPQHSSLAfpfTVEEVVA---LG---RAPHGSS-------AAQDRQIVREALALVGLAHLAGRSYQ--TLSGGeqqrvql 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 167 --------QRQAVavaraaafGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHnmphvfDV------ADRI 232
Cdd:COG4559 145 arvlaqlwEPVDG--------GPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLH------DLnlaaqyADRI 210
|
250 260
....*....|....*....|...
gi 1867925291 233 HIQRLGKCAATITPQShTMTDAV 255
Cdd:COG4559 211 LLLHQGRLVAQGTPEE-VLTDEL 232
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
17-232 |
8.77e-26 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 101.12 E-value: 8.77e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFG----RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRP---QDA 89
Cdd:cd03258 1 MIELKNVSKVFGdtggKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGkelRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 90 RVHgIETVYQNLAVSPALDVASNLFLgreerlpgPLgslfRILDTKG--MRKKAKEELTRLGISTLQDvTVPvENLSGGQ 167
Cdd:cd03258 81 RRR-IGMIFQHFNLLSSRTVFENVAL--------PL----EIAGVPKaeIEERVLELLELVGLEDKAD-AYP-AQLSGGQ 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 168 RQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDInRELGLTIVLITHEMEVVKRICDRV 211
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
18-239 |
1.14e-25 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 99.57 E-value: 1.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV----HFKRPQDARvhg 93
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdleDELPPLRRR--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQNLAVSPALDVASNLFLGreerLPGplgslfrildtkGMRKkakeeltRLGI--STLQDvtvpvenlsggqrqav 171
Cdd:cd03229 78 IGMVFQDFALFPHLTVLENIALG----LSG------------GQQQ-------RVALarALAMD---------------- 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 172 avaraaafgSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03229 119 ---------PDVLLLDEPTSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
19-239 |
1.16e-25 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 98.86 E-value: 1.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 19 KARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvhgietvy 98
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELR-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 99 QNLAVSPALdvasnlflgreerlpgplgslfrildTKGMRKKAkeELTRLGIStlqdvtvpvenlsggqrqavavaraaa 178
Cdd:cd00267 73 RRIGYVPQL--------------------------SGGQRQRV--ALARALLL--------------------------- 97
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 179 fGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd00267 98 -NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
7-233 |
2.86e-25 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 103.95 E-value: 2.86e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 7 EAPRTETREPILKARNL-VKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKR 85
Cdd:COG3845 247 EKAPAEPGEVVLEVENLsVRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLS 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHGIETV---YQNLAVSPALDVASNLFLGREERlpGPLGSlFRILDTKGMRKKAKEELTRLGISTlQDVTVPVEN 162
Cdd:COG3845 327 PRERRRLGVAYIpedRLGRGLVPDMSVAENLILGRYRR--PPFSR-GGFLDRKAIRAFAEELIEEFDVRT-PGPDTPARS 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 163 LSGG-----------QRqavavaraaafGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADR 231
Cdd:COG3845 403 LSGGnqqkvilarelSR-----------DPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDR 471
|
..
gi 1867925291 232 IH 233
Cdd:COG3845 472 IA 473
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
21-247 |
9.18e-25 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 98.57 E-value: 9.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDarvHGIETVYQN 100
Cdd:cd03296 6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---RNVGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 101 LAVSPALDVASNLFLGREERLPGPLGSLFRIldtkgmRKKAKEELTRLGISTLQDvTVPVEnLSGGQRQAVAVARAAAFG 180
Cdd:cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEI------RAKVHELLKLVQLDWLAD-RYPAQ-LSGGQRQRVALARALAVE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 181 SKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
13-240 |
1.10e-24 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 100.19 E-value: 1.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 13 TREPILKARNLVKTF-------GRVVG----LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV 81
Cdd:COG4608 3 MAEPLLEVRDLKKHFpvrgglfGRTVGvvkaVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 82 HFKRPQDARVH--GIETVYQNlavspaldvasnlflgreerlpgPLGSL----------------FRILDTKGMRKKAKE 143
Cdd:COG4608 83 TGLSGRELRPLrrRMQMVFQD-----------------------PYASLnprmtvgdiiaeplriHGLASKAERRERVAE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 144 ELTRLGISTLQDVTVPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNM 222
Cdd:COG4608 140 LLELVGLRPEHADRYPHE-FSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDElGLTYLFISHDL 218
|
250
....*....|....*...
gi 1867925291 223 PHVFDVADRIHIQRLGKC 240
Cdd:COG4608 219 SVVRHISDRVAVMYLGKI 236
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
18-239 |
2.44e-24 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 97.31 E-value: 2.44e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH----FKRPqdarvhg 93
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITnlppHKRP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQNLAVSPALDVASNLFLGREerlpgplgslFRILDTKGMRKKAKEELTRLGISTLQDVTvpVENLSGGQRQAVAV 173
Cdd:cd03300 74 VNTVFQNYALFPHLTVFENIAFGLR----------LKKLPKAEIKERVAEALDLVQLEGYANRK--PSQLSGGQQQRVAI 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 174 ARAAAFGSKVVVLDEPTAALGV--RESNQvLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03300 142 ARALVNEPKVLLLDEPLGALDLklRKDMQ-LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGK 208
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
18-239 |
3.76e-24 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 96.13 E-value: 3.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhFKRPQDARVHG--IE 95
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-QKNIEALRRIGalIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 --TVYQNLAVSPALDVASNLFLGREERLPgplgslfRILDTKGMRKKAKEEL--------TRLGIStLQDVTVPvenlsg 165
Cdd:cd03268 80 apGFYPNLTARENLRLLARLLGIRKKRID-------EVLDVVGLKDSAKKKVkgfslgmkQRLGIA-LALLGNP------ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 166 gqrqavavaraaafgsKVVVLDEPTAAL---GVREsnqVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03268 146 ----------------DLLILDEPTNGLdpdGIKE---LRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
15-241 |
5.24e-24 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 98.50 E-value: 5.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTF----------GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV--H 82
Cdd:PRK11308 3 QPLLQAIDLKKHYpvkrglfkpeRLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLlkA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 83 FKRPQDARVHGIETVYQNLAVS--PALDVAS--------NLFLGREERlpgplgslfrildtkgmRKKAKEELTRLGIST 152
Cdd:PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSlnPRKKVGQileeplliNTSLSAAER-----------------REKALAMMAKVGLRP 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 153 LQDVTVPvENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADR 231
Cdd:PRK11308 146 EHYDRYP-HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLqQELGLSYVFISHDLSVVEHIADE 224
|
250
....*....|
gi 1867925291 232 IHIQRLGKCA 241
Cdd:PRK11308 225 VMVMYLGRCV 234
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
18-239 |
5.78e-24 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 95.96 E-value: 5.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARV-HGIET 96
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT-GLPPHERArAGIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNLFLGREERLPGPLG-------SLFRILdtkgmrkkaKEELTRLGistlqdvtvpvENLSGGQRQ 169
Cdd:cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKarlervyELFPRL---------KERRKQLA-----------GTLSGGEQQ 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 170 AVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03224 140 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
21-232 |
1.19e-23 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 95.54 E-value: 1.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfkRPQDARVHGIE----T 96
Cdd:PRK09493 5 KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV---NDPKVDERLIRqeagM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNLFLgreerlpGPLGslFRILDTKGMRKKAKEELTRLGISTLQDvTVPVEnLSGGQRQAVAVARA 176
Cdd:PRK09493 82 VFQQFYLFPHLTALENVMF-------GPLR--VRGASKEEAEKQARELLAKVGLAERAH-HYPSE-LSGGQQQRVAIARA 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRL 206
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
33-239 |
2.24e-23 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 94.28 E-value: 2.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDL---YPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGE-------LFVSGQQVHFKrPQDARVhGIetVYQNLA 102
Cdd:cd03297 10 LPDFTLKIdfdLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTivlngtvLFDSRKKINLP-PQQRKI-GL--VFQQYA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 103 VSPALDVASNLFLGreerlpgplgslFRILDTKGMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSK 182
Cdd:cd03297 86 LFPHLNVRENLAFG------------LKRKRNREDRISVDELLDLLGLDHLLNR--YPAQLSGGEKQRVALARALAAQPE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 183 VVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGR 209
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
17-242 |
2.45e-23 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 94.36 E-value: 2.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARvH 92
Cdd:cd03266 1 MITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV-KEPAEAR-R 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIETVYQNLAVSPALDVASNL-FLGREERLpgplgslfrildtKGMRKKAK-EELT-RLGISTLQDVtvPVENLSGGQRQ 169
Cdd:cd03266 79 RLGFVSDSTGLYDRLTARENLeYFAGLYGL-------------KGDELTARlEELAdRLGMEELLDR--RVGGFSTGMRQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 170 AVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
18-248 |
3.34e-23 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 94.32 E-value: 3.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDarvHGIETV 97
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK---RDISYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNLFLGREERLpgplgslfriLDTKGMRKKAKEELTRLGISTLQDVTvpVENLSGGQRQAVAVARAA 177
Cdd:cd03299 77 PQNYALFPHMTVYKNIAYGLKKRK----------VDKKEIERKVLEIAEMLGIDHLLNRK--PETLSGGEQQRVAIARAL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQS 248
Cdd:cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
18-232 |
3.58e-23 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 93.73 E-value: 3.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVhgiETV 97
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRR---QVA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YqnLAVSPALdvasnlFLGR-EERLPGPlgslFRILDTKGMRKKAKEELTRLGI--STLQDvtvPVENLSGGQRQAVAVA 174
Cdd:COG4619 78 Y--VPQEPAL------WGGTvRDNLPFP----FQLRERKFDRERALELLERLGLppDILDK---PVERLSGGERQRLALI 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRI 232
Cdd:COG4619 143 RALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEeGRAVLWVSHDPEQIERVADRV 201
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
15-234 |
7.38e-23 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 92.11 E-value: 7.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLvkTFGRVVglDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGI 94
Cdd:cd03215 2 EPVLEVRGL--SVKGAV--RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 etVY-----QNLAVSPALDVASNLFLGReeRLPGplgslfrildtkGMRKK---AKEeLTRlgistlqdvtvpvenlsgg 166
Cdd:cd03215 78 --AYvpedrKREGLVLDLSVAENIALSS--LLSG------------GNQQKvvlARW-LAR------------------- 121
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 167 qrqavavaraaafGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHI 234
Cdd:cd03215 122 -------------DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILV 176
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
18-247 |
1.08e-22 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 93.33 E-value: 1.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFG----RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvHG 93
Cdd:COG1124 2 LEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFR-RR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQN--LAVSPALDVasnlflgrEERLPGPLgslfRILDTKGMRKKAKEELTRLGI-STLQDVTvPVEnLSGGQRQA 170
Cdd:COG1124 81 VQMVFQDpyASLHPRHTV--------DRILAEPL----RIHGLPDREERIAELLEQVGLpPSFLDRY-PHQ-LSGGQRQR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 171 VAVARAAAFGSKVVVLDEPTAALGVreSNQ--VLQLVRDLR-DRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:COG1124 147 VAIARALILEPELLLLDEPTSALDV--SVQaeILNLLKDLReERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVA 224
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
19-232 |
1.19e-22 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 91.34 E-value: 1.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 19 KARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH-FKRPQDARvhgietv 97
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAsLSPKELAR------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 yqNLAVSP-ALDvasnlflgreerlpgplgslfrildtkgmrkkakeeltRLGISTLQDVtvPVENLSGGQRQAVAVARA 176
Cdd:cd03214 74 --KIAYVPqALE--------------------------------------LLGLAHLADR--PFNELSGGERQRVLLARA 111
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLaRERGKTVVMVLHDLNLAARYADRV 168
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
18-246 |
6.76e-22 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 90.68 E-value: 6.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH----FKR-------- 85
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITklpmHKRarlgigyl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHGIETVYQNLavspaLDVASNLFLGREERlpgplgslfrildtkgmRKKAKEELTRLGISTLQDvtVPVENLSG 165
Cdd:cd03218 81 PQEASIFRKLTVEENI-----LAVLEIRGLSKKER-----------------EEKLEELLEEFHITHLRK--SKASSLSG 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 166 GQRQAVAVARAAAFGSKVVVLDEPTAA---LGVREsnqVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:cd03218 137 GERRRVEIARALATNPKFLLLDEPFAGvdpIAVQD---IQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213
|
....
gi 1867925291 243 TITP 246
Cdd:cd03218 214 EGTP 217
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
17-247 |
1.33e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 90.91 E-value: 1.33e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGR-VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH--- 92
Cdd:PRK13639 1 ILETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRktv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIetVYQN-----LAVSPALDVA---SNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVtvPVENLS 164
Cdd:PRK13639 81 GI--VFQNpddqlFAPTVEEDVAfgpLNLGLSKEE-----------------VEKRVKEALKAVGMEGFENK--PPHHLS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 165 GGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATI 244
Cdd:PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
|
...
gi 1867925291 245 TPQ 247
Cdd:PRK13639 220 TPK 222
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
16-254 |
1.95e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 90.22 E-value: 1.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV-HFKRPQDARVhgi 94
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLaDWSPAELARR--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 etvyqnLAVSPAldvASNL---FLGRE----ERLPGPLGslfrildtkgmRKKAKEE----LTRLGISTLQDVTVPVenL 163
Cdd:PRK13548 78 ------RAVLPQ---HSSLsfpFTVEEvvamGRAPHGLS-----------RAEDDALvaaaLAQVDLAHLAGRDYPQ--L 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 164 SGG---------------QRQAvavaraaafGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHnmphvfD 227
Cdd:PRK13548 136 SGGeqqrvqlarvlaqlwEPDG---------PPRWLLLDEPTSALDLAHQHHVLRLARQLaHERGLAVIVVLH------D 200
|
250 260 270
....*....|....*....|....*....|...
gi 1867925291 228 V------ADRIHIQRLGKCAATITPQsHTMTDA 254
Cdd:PRK13548 201 LnlaaryADRIVLLHQGRLVADGTPA-EVLTPE 232
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
17-232 |
2.65e-21 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 90.88 E-value: 2.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVP---DTGELFVSGQQV-HFKRPQD 88
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLlKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 89 ARVHG--IETVYQNlavspaldvasnlflgreerlpgPLGSL----------------FRILDTKGMRKKAKEELTRLGI 150
Cdd:COG0444 81 RKIRGreIQMIFQD-----------------------PMTSLnpvmtvgdqiaeplriHGGLSKAEARERAIELLERVGL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 151 STLQDV--TVPVEnLSGGqrqavavaraaafgsKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFD 227
Cdd:COG0444 138 PDPERRldRYPHE-LSGGmrqrvmiaralalepKLLIADEPTTALDVTIQAQILNLLKDLqRELGLAILFITHDLGVVAE 216
|
....*
gi 1867925291 228 VADRI 232
Cdd:COG0444 217 IADRV 221
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
7-245 |
3.60e-21 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 92.15 E-value: 3.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 7 EAPRTETREPILKARNLV-KTFGRVvglDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKR 85
Cdd:PRK09700 255 ENVSNLAHETVFEVRNVTsRDRKKV---RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHGIETVYQNL---AVSPALDVASNLFLGREERLPGpLGSLFRILDTKGMRKKAKEELTRLGI---STLQDVTvp 159
Cdd:PRK09700 332 PLDAVKKGMAYITESRrdnGFFPNFSIAQNMAISRSLKDGG-YKGAMGLFHEVDEQRTAENQRELLALkchSVNQNIT-- 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 160 veNLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:PRK09700 409 --ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486
|
....*.
gi 1867925291 240 CAATIT 245
Cdd:PRK09700 487 LTQILT 492
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
15-239 |
4.15e-21 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 89.21 E-value: 4.15e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGElfvsgqqVHFkRPQDARVHGI 94
Cdd:PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE-------VHY-RMRDGQLRDL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ET----------------VYQN------LAVSPALDVAsnlflgreERLPGplgslfrildtKGMRKKAkeELTRLGIST 152
Cdd:PRK11701 76 YAlseaerrrllrtewgfVHQHprdglrMQVSAGGNIG--------ERLMA-----------VGARHYG--DIRATAGDW 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 153 LQDVTVPVENL-------SGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPH 224
Cdd:PRK11701 135 LERVEIDAARIddlpttfSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLvRELGLAVVIVTHDLAV 214
|
250
....*....|....*
gi 1867925291 225 VFDVADRIHIQRLGK 239
Cdd:PRK11701 215 ARLLAHRLLVMKQGR 229
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
9-239 |
5.24e-21 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 91.05 E-value: 5.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 9 PRTETRE---PILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH--- 82
Cdd:PRK11607 8 PQAKTRKaltPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLShvp 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 83 -FKRPqdarvhgIETVYQNLAVSPALDVASNLFLG-REERLPgplgslfrildtKGMRKKAKEELtrLGISTLQDVTV-P 159
Cdd:PRK11607 88 pYQRP-------INMMFQSYALFPHMTVEQNIAFGlKQDKLP------------KAEIASRVNEM--LGLVHMQEFAKrK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 160 VENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALG--VRESNQvLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRL 237
Cdd:PRK11607 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDkkLRDRMQ-LEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225
|
..
gi 1867925291 238 GK 239
Cdd:PRK11607 226 GK 227
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
15-247 |
5.77e-21 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 88.50 E-value: 5.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARVH-G 93
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDIT-GLPPHRIARlG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQNLAVSPALDVASNLFLGREERLPGPLGS--------LFRILdtkgmrkkaKEELTRLGistlqdvtvpvENLSG 165
Cdd:COG0410 80 IGYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRadlervyeLFPRL---------KERRRQRA-----------GTLSG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 166 GqrqavavaraaafgsKVVVLDEPTAALG---VREsnqVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:COG0410 140 GeqqmlaigralmsrpKLLLLDEPSLGLApliVEE---IFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVL 216
|
....*
gi 1867925291 243 TITPQ 247
Cdd:COG0410 217 EGTAA 221
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
31-248 |
7.83e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 88.95 E-value: 7.83e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 31 VGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRP--QDARVH-GI-----------ET 96
Cdd:PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVklSDIRKKvGLvfqypeyqlfeET 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPaldvaSNLFLGREERLpgplgslfrildtkgMRKKAKEELTRLGISTLQDVTvPVEnLSGGQRQAVAVARA 176
Cdd:PRK13637 101 IEKDIAFGP-----INLGLSEEEIE---------------NRVKRAMNIVGLDYEDYKDKS-PFE-LSGGQKRRVAIAGV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQS 248
Cdd:PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
22-248 |
1.31e-20 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 87.76 E-value: 1.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 22 NLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARV-----HGIET 96
Cdd:COG4161 7 NINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDFSQKPSEKAirllrQKVGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNLflgreerLPGPLgslfRILD--TKGMRKKAKEELTRLGISTLQDVtVPVeNLSGGQRQAVAVA 174
Cdd:COG4161 87 VFQQYNLWPHLTVMENL-------IEAPC----KVLGlsKEQAREKAMKLLARLRLTDKADR-FPL-HLSGGQQQRVAIA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI------HIQRLGKCAATITPQS 248
Cdd:COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVvymekgRIIEQGDASHFTQPQT 233
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
15-233 |
1.64e-20 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 87.10 E-value: 1.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTF-------GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFV--SGQQVHFKR 85
Cdd:COG4778 2 TTLLEVENLSKTFtlhlqggKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhDGGWVDLAQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARV-----HGIETVYQNLAVSP---ALDVASNlflgreerlpgPLgsLFRILDTKGMRKKAKEELTRLGIStlqdvt 157
Cdd:COG4778 82 ASPREIlalrrRTIGYVSQFLRVIPrvsALDVVAE-----------PL--LERGVDREEARARARELLARLNLP------ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 158 vpvENL--------SGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVA 229
Cdd:COG4778 143 ---ERLwdlppatfSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVA 219
|
....
gi 1867925291 230 DRIH 233
Cdd:COG4778 220 DRVV 223
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
21-232 |
1.76e-20 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 88.98 E-value: 1.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQD---ARvHG 93
Cdd:COG1135 5 ENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERElraAR-RK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 I------------ETVYQNLAVspALDVASnlfLGREERlpgplgslfrildtkgmRKKAKEELTRLGISTLQDVtVPvE 161
Cdd:COG1135 84 IgmifqhfnllssRTVAENVAL--PLEIAG---VPKAEI-----------------RKRVAELLELVGLSDKADA-YP-S 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 162 NLSGGqrqavavaraaafgsKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRI 232
Cdd:COG1135 140 QLSGGqkqrvgiaralannpKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRV 211
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
14-232 |
1.99e-20 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 89.00 E-value: 1.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 14 REPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDaRvhG 93
Cdd:COG3842 2 AMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK-R--N 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQNLAVSPALDVASNL-F------LGREERlpgplgslfrildtkgmRKKAKEELTRLGISTLQDVtvPVENLSGG 166
Cdd:COG3842 79 VGMVFQDYALFPHLTVAENVaFglrmrgVPKAEI-----------------RARVAELLELVGLEGLADR--YPHQLSGG 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 167 QRQAvavaraaafgsKVVVLDEPTAAL--GVREsnQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:COG3842 140 QQQRvalaralapepRVLLLDEPLSALdaKLRE--EMREELRRLqRELGITFIYVTHDQEEALALADRI 206
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
33-232 |
2.83e-20 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 85.77 E-value: 2.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRpqdaRVHGIETVYQnlavspalDVASN 112
Cdd:cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE----RRKSIGYVMQ--------DVDYQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLG--REERLPGplgslfrILDTKGMRKKAKEELTRLGISTLQDVTvPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPT 190
Cdd:cd03226 84 LFTDsvREELLLG-------LKELDAGNEQAETVLKDLDLYALKERH-PLS-LSGGQKQRLAIAAALLSGKDLLIFDEPT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1867925291 191 AALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
18-234 |
3.00e-20 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 86.42 E-value: 3.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARVH-GIET 96
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT-KLPPHERARaGIAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNLFLG------REERLPGPLGSLFRILdtkgmrkkaKEELTRLGistlqdvtvpvENLSGGQRQA 170
Cdd:TIGR03410 80 VPQGREIFPRLTVEENLLTGlaalprRSRKIPDEIYELFPVL---------KEMLGRRG-----------GDLSGGQQQQ 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 171 VAVARAAAFGSKVVVLDEPTAalGVRES--NQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHI 234
Cdd:TIGR03410 140 LAIARALVTRPKLLLLDEPTE--GIQPSiiKDIGRVIRRLRAEgGMAILLVEQYLDFARELADRYYV 204
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
12-242 |
4.11e-20 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 89.11 E-value: 4.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 12 ETREPILKARNLV---KTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGA-EVPDTGELFVSGQQVHFKRPQ 87
Cdd:TIGR02633 252 EIGDVILEARNLTcwdVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGKPVDIRNPA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 88 DARVHGIETVYQNL---AVSPALDVASNLFLGREERLPGplgslFRILDTKGMRKKAKEELTRLGISTLQDvTVPVENLS 164
Cdd:TIGR02633 332 QAIRAGIAMVPEDRkrhGIVPILGVGKNITLSVLKSFCF-----KMRIDAAAELQIIGSAIQRLKVKTASP-FLPIGRLS 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 165 GGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
15-232 |
4.87e-20 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 88.83 E-value: 4.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNL-----VKTFGRVVglDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGA-EVPDTGELFVSGQQVHFKRPQD 88
Cdd:PRK13549 257 EVILEVRNLtawdpVNPHIKRV--DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAyPGRWEGEIFIDGKPVKIRNPQQ 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 89 ARVHGIETVYQNL---AVSPALDVASNLFLGREERLpgplgSLFRILDTKGMRKKAKEELTRLGISTlQDVTVPVENLSG 165
Cdd:PRK13549 335 AIAQGIAMVPEDRkrdGIVPVMGVGKNITLAALDRF-----TGGSRIDDAAELKTILESIQRLKVKT-ASPELAIARLSG 408
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 166 GQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRV 475
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
29-245 |
5.57e-20 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 88.81 E-value: 5.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 29 RVVGLDG------VSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGI-------- 94
Cdd:PRK11288 259 RLDGLKGpglrepISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGImlcpedrk 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 -------ETVYQNLAVSpaldvasnlflGREERLPGPLgslfrILDTKGMRKKAKEELTRLGISTLQDVTvPVENLSGGQ 167
Cdd:PRK11288 339 aegiipvHSVADNINIS-----------ARRHHLRAGC-----LINNRWEAENADRFIRSLNIKTPSREQ-LIMNLSGGN 401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 168 RQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATIT 245
Cdd:PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
28-221 |
7.94e-20 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 84.40 E-value: 7.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRP--QDARVHgIETVYQN----- 100
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKglLERRQR-VGLVFQDpddql 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 101 LAVSPALDVA---SNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAA 177
Cdd:TIGR01166 82 FAADVDQDVAfgpLNLGLSEAE-----------------VERRVREALTAVGASGLRER--PTHCLSGGEKKRVAIAGAV 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHN 221
Cdd:TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
43-243 |
8.30e-20 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 84.85 E-value: 8.30e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 43 GEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVhgiETVYQNLAVSPALDVASNLFLGREERLp 122
Cdd:cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV---SMLFQENNLFAHLTVEQNVGLGLSPGL- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 123 gplgslfRIldTKGMRKKAKEELTRLGISTLqDVTVPvENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVL 202
Cdd:cd03298 100 -------KL--TAEDRQAIEVALARVGLAGL-EKRLP-GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1867925291 203 QLVRDL-RDRGLPVILISHNMPHVFDVADR-IHIQRlGKCAAT 243
Cdd:cd03298 169 DLVLDLhAETKMTVLMVTHQPEDAKRLAQRvVFLDN-GRIAAQ 210
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
10-232 |
1.34e-19 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 84.69 E-value: 1.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 10 RTETREPILK--ARNLVKTFGR-VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGqQVHFKRp 86
Cdd:cd03267 11 RVYSKEPGLIgsLKSLFKRKYReVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWKR- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 87 QDARVHGIETVY-QNLAVSPALDVASNLFLGReerlpgplgslfRILDTKGMRkkAKEELTRLgiSTLQDVT----VPVE 161
Cdd:cd03267 89 RKKFLRRIGVVFgQKTQLWWDLPVIDSFYLLA------------AIYDLPPAR--FKKRLDEL--SELLDLEelldTPVR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 162 NLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:cd03267 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYnRERGTTVLLTSHYMKDIEALARRV 224
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
28-232 |
1.57e-19 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 87.86 E-value: 1.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDA----RVHGIETVYQNLAV 103
Cdd:PRK10535 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA-TLDADAlaqlRREHFGFIFQRYHL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 104 SPALDVASNLflgreeRLPgplgSLFRILDTKGMRKKAKEELTRLGIStlQDVTVPVENLSGGQRQAVAVARAAAFGSKV 183
Cdd:PRK10535 98 LSHLTAAQNV------EVP----AVYAGLERKQRLLRAQELLQRLGLE--DRVEYQPSQLSGGQQQRVSIARALMNGGQV 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1867925291 184 VVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRI 232
Cdd:PRK10535 166 ILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD-PQVAAQAERV 213
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
32-247 |
1.61e-19 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 85.20 E-value: 1.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 32 GLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDAR-----VhGI-----------E 95
Cdd:TIGR04521 20 ALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKdlrkkV-GLvfqfpehqlfeE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 TVYQNLAVSPaldvaSNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGIS-TLQDVTvPVEnLSGGQRQAVAVA 174
Cdd:TIGR04521 99 TVYKDIAFGP-----KNLGLSEEE-----------------AEERVKEALELVGLDeEYLERS-PFE-LSGGQMRRVAIA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:TIGR04521 155 GVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLhKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPR 228
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
21-231 |
1.78e-19 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 84.80 E-value: 1.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRP---QDARVHGIET- 96
Cdd:PRK11264 7 KNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSlsqQKGLIRQLRQh 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 ---VYQNLAVSPALDVASNLflgreerLPGPLgslfrilDTKGMRK-----KAKEELTRLGISTLQDvTVPvENLSGGQR 168
Cdd:PRK11264 87 vgfVFQNFNLFPHRTVLENI-------IEGPV-------IVKGEPKeeataRARELLAKVGLAGKET-SYP-RRLSGGQQ 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 169 QAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADR 231
Cdd:PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADR 213
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
11-232 |
2.43e-19 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 84.47 E-value: 2.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 11 TETREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFK------ 84
Cdd:COG4598 2 TDTAPPALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKpdrdge 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 85 -RPQDAR-VHGIET----VYQNLAVSPALDVASNLflgreerLPGPLgslfRILdtkGM-RKKAKEE----LTRLGISTL 153
Cdd:COG4598 82 lVPADRRqLQRIRTrlgmVFQSFNLWSHMTVLENV-------IEAPV----HVL---GRpKAEAIERaealLAKVGLADK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 154 QDVtVPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALG---VREsnqVLQLVRDLRDRGLPVILISHNMPHVFDVAD 230
Cdd:COG4598 148 RDA-YPAH-LSGGQQQRAAIARALAMEPEVMLFDEPTSALDpelVGE---VLKVMRDLAEEGRTMLVVTHEMGFARDVSS 222
|
..
gi 1867925291 231 RI 232
Cdd:COG4598 223 HV 224
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
16-222 |
2.53e-19 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 86.43 E-value: 2.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfkrPQDARVHG-- 93
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVE---ALSARAASrr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQNLAVSPALDVASNLFLGREerlpgPLGSLFRILDTKGmRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAV 173
Cdd:PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRT-----PHRSRFDTWTETD-RAAVERAMERTGVAQFADR--PVTSLSGGERQRVLL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1867925291 174 ARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNM 222
Cdd:PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL 199
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
18-244 |
3.32e-19 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 83.29 E-value: 3.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFG----RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfKRPQDARvhG 93
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV--TGPGPDR--G 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IetVYQNLAVSPALDVASNLFLGREerlpgplgslFRILDTKGMRKKAKEELTRLGISTLQDVTvPVEnLSGGQRQAVAV 173
Cdd:cd03293 77 Y--VFQQDALLPWLTVLDNVALGLE----------LQGVPKAEARERAEELLELVGLSGFENAY-PHQ-LSGGMRQRVAL 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 174 ARAAAFGSKVVVLDEPTAAL--GVRESNQVLqLVRDLRDRGLPVILISHNMPHVFDVADRIHIqrLGKCAATI 244
Cdd:cd03293 143 ARALAVDPDVLLLDEPFSALdaLTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVV--LSARPGRI 212
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
21-221 |
3.57e-19 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 83.23 E-value: 3.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTF-GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV-HFKRPQDA--RVHgIET 96
Cdd:cd03292 4 INVTKTYpNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsDLRGRAIPylRRK-IGV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNLFLGREERLPGPlgslfrildtKGMRKKAKEELTRLGISTLQDvTVPVEnLSGGQRQAVAVARA 176
Cdd:cd03292 83 VFQDFRLLPDRNVYENVAFALEVTGVPP----------REIRKRVPAALELVGLSHKHR-ALPAE-LSGGEQQRVAIARA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHN 221
Cdd:cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
18-232 |
1.30e-18 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 83.66 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRP-QDARVhGIet 96
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLPpRERRV-GF-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNLFLGREERLPGPlgslfrildtKGMRKKAKEELTRLGISTLQDVTvPvENLSGGQrqavavara 176
Cdd:COG1118 80 VFQHYALFPHMTVAENIAFGLRVRPPSK----------AEIRARVEELLELVQLEGLADRY-P-SQLSGGQrqrvalara 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 177 aafgsKVVVLDEPTAAL--GVResNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRI 232
Cdd:COG1118 148 lavepEVLLLDEPFGALdaKVR--KELRRWLRRLHDElGGTTVFVTHDQEEALELADRV 204
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
23-247 |
1.54e-18 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 82.31 E-value: 1.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 23 LVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHF---KRPQDARVHGIETVYQ 99
Cdd:cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAmsrKELRELRRKKISMVFQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 100 NLAVSPALDVASNLFLG-------REERlpgplgslfrildtkgmRKKAKEELTRLGISTLQDVtVPVEnLSGGQRQAVA 172
Cdd:cd03294 110 SFALLPHRTVLENVAFGlevqgvpRAER-----------------EERAAEALELVGLEGWEHK-YPDE-LSGGMQQRVG 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 173 VARAAAFGSKVVVLDEPTAALGV---RE-SNQVLQLVRDLRDrglPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:cd03294 171 LARALAVDPDILLMDEAFSALDPlirREmQDELLRLQAELQK---TIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPE 246
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
18-232 |
2.24e-18 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 81.07 E-value: 2.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTG-----AEVPDTGELFVSGQQVhfKRPQDARVH 92
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGKDI--YDLDVDVLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 ---GIETVYQNLAVSPAlDVASNLFLGReerlpgplgSLFRILDTKGMRKKAKEELTRLGISTLQDVTVPVENLSGGQRQ 169
Cdd:cd03260 79 lrrRVGMVFQKPNPFPG-SIYDNVAYGL---------RLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 170 AVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRgLPVILISHNMPHVFDVADRI 232
Cdd:cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRT 210
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
18-222 |
2.46e-18 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 81.94 E-value: 2.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH----- 92
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKvadkn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 -------GIETVYQNLAVSPALDVASNLflgreerLPGPLGSLFriLDTKGMRKKAKEELTRLGISTLQDVTVPVeNLSG 165
Cdd:PRK10619 86 qlrllrtRLTMVFQHFNLWSHMTVLENV-------MEAPIQVLG--LSKQEARERAVKYLAKVGIDERAQGKYPV-HLSG 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 166 GQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNM 222
Cdd:PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
33-247 |
1.32e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 80.16 E-value: 1.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvHGIETVYQNlavspaldvASN 112
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR-HKIGMVFQN---------PDN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGREERLPGPLGSLFRILDTKGMRKKAKEELTRLGISTLQDVTvPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAA 192
Cdd:PRK13650 93 QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-PAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 193 LGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVfDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK13650 171 LDPEGRLELIKTIKGIRDDyQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPR 225
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
27-225 |
1.35e-17 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 78.43 E-value: 1.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 27 FGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGqqvhfkrpqDARVhgiETVYQNLAVSPA 106
Cdd:NF040873 2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG---------GARV---AYVPQRSEVPDS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 107 L--DVASNLFLGREERLpGPLGSLfrildTKGMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSKVV 184
Cdd:NF040873 70 LplTVRDLVAMGRWARR-GLWRRL-----TRDDRAAVDDALERVGLADLAGR--QLGELSGGQRQRALLAQGLAQEADLL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1867925291 185 VLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHV 225
Cdd:NF040873 142 LLDEPTTGLDAESRERIIALLAEEHARGATVVVVTHDLELV 182
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
36-247 |
1.36e-17 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 80.93 E-value: 1.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 36 VSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKR-----PQDARVHGIetVYQNLAVSPALDVA 110
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRkgiflPPEKRRIGY--VFQEARLFPHLSVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 111 SNLFLGREeRLPGPLgslfrildtkgmRKKAKEELTR-LGISTLqdVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEP 189
Cdd:TIGR02142 94 GNLRYGMK-RARPSE------------RRISFERVIElLGIGHL--LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 190 TAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:TIGR02142 159 LAALDDPRKYEILPYLERLHAEfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIA 217
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
18-239 |
1.46e-17 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 78.84 E-value: 1.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDarvHGIETV 97
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD---RDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNLFLGREerlpgplgslfrildtkgMRKKAKEELTR--------LGISTLQDVTvpVENLSGGQRQ 169
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGLK------------------LRKVPKDEIDErvrevaelLQIEHLLDRK--PKQLSGGQRQ 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 170 AVAVARAAAFGSKVVVLDEPTAALGVRESNQV-LQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMrAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
15-247 |
2.52e-17 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 78.53 E-value: 2.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFG-RVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH----FKR---- 85
Cdd:COG1137 1 MMTLEAENLVKSYGkRTV-VKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIThlpmHKRarlg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 ----PQDARVHGIETVYQNLavspaLDVASNLFLGREERlpgplgslfrildtkgmRKKAKEELTRLGISTLQDvtVPVE 161
Cdd:COG1137 80 igylPQEASIFRKLTVEDNI-----LAVLELRKLSKKER-----------------EERLEELLEEFGITHLRK--SKAY 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 162 NLSGGqrqavavaraaafgsKVVVLDEPTAA---LGVREsnqVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLG 238
Cdd:COG1137 136 SLSGGerrrveiaralatnpKFILLDEPFAGvdpIAVAD---IQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEG 212
|
....*....
gi 1867925291 239 KCAATITPQ 247
Cdd:COG1137 213 KVLAEGTPE 221
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
36-232 |
2.73e-17 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 78.52 E-value: 2.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 36 VSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARV-----HGIETVYQNLAVSPALDVA 110
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAirelrRNVGMVFQQYNLWPHLTVQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 111 SNLflgreerLPGP---LGslfriLDTKGMRKKAKEELTRLGISTLQDvTVPVEnLSGGQRQAVAVARAAAFGSKVVVLD 187
Cdd:PRK11124 101 QNL-------IEAPcrvLG-----LSKDQALARAEKLLERLRLKPYAD-RFPLH-LSGGQQQRVAIARALMMEPQVLLFD 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1867925291 188 EPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMphvfDVADRI 232
Cdd:PRK11124 167 EPTAALDPEITAQIVSIIRELAETGITQVIVTHEV----EVARKT 207
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
20-166 |
3.59e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 80.49 E-value: 3.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 20 ARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQqvhfKR----PQDARVHGIE 95
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG----LRigylPQEPPLDDDL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 TVYQNL--AVSPALDVASNLF-----LGREERLPGPLGSLFRILDTKG---MRKKAKEELTRLGISTlQDVTVPVENLSG 165
Cdd:COG0488 77 TVLDTVldGDAELRALEAELEeleakLAEPDEDLERLAELQEEFEALGgweAEARAEEILSGLGFPE-EDLDRPVSELSG 155
|
.
gi 1867925291 166 G 166
Cdd:COG0488 156 G 156
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
17-247 |
4.02e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 78.69 E-value: 4.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTF-GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvHGIE 95
Cdd:PRK13652 3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR-KFVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 TVYQN---LAVSPAldVASNLFLGreerlPGPLGslfriLDTKGMRKKAKEELTRLGISTLQDvTVPvENLSGGQRQAVA 172
Cdd:PRK13652 82 LVFQNpddQIFSPT--VEQDIAFG-----PINLG-----LDEETVAHRVSSALHMLGLEELRD-RVP-HHLSGGEKKRVA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 173 VARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVE 223
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
5-246 |
4.10e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 79.51 E-value: 4.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 5 EFEAPRTETREPILKARNLV-----KTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGEL----F 75
Cdd:PRK13631 9 KLKVPNPLSDDIILRVKNLYcvfdeKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 76 VSGQQVHFKRPQDARVHG-----------IETVYQNLAVSPALD-VASNLFLGreerlPGPLGslfriLDTKGMRKKAKE 143
Cdd:PRK13631 89 YIGDKKNNHELITNPYSKkiknfkelrrrVSMVFQFPEYQLFKDtIEKDIMFG-----PVALG-----VKKSEAKKLAKF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 144 ELTRLGI-STLQDVTvPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNM 222
Cdd:PRK13631 159 YLNKMGLdDSYLERS-PFG-LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
|
250 260
....*....|....*....|....
gi 1867925291 223 PHVFDVADRIHIQRLGKCAATITP 246
Cdd:PRK13631 237 EHVLEVADEVIVMDKGKILKTGTP 260
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
12-248 |
4.85e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 80.23 E-value: 4.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 12 ETREPILKARNLVKTF-----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFV--SGQQVHFK 84
Cdd:TIGR03269 274 EVGEPIIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvGDEWVDMT 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 85 RPQ-DARVHG---IETVYQNLAVSPALDVASNLFLGREERLPGPLGSLFRI--LDTKGM-RKKAKEELTRLgistlqdvt 157
Cdd:TIGR03269 354 KPGpDGRGRAkryIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVitLKMVGFdEEKAEEILDKY--------- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 158 vPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQR 236
Cdd:TIGR03269 425 -PDE-LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMR 502
|
250
....*....|..
gi 1867925291 237 LGKCAATITPQS 248
Cdd:TIGR03269 503 DGKIVKIGDPEE 514
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
17-232 |
1.09e-16 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 77.54 E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTF---------GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQ 87
Cdd:TIGR02769 2 LLEVRDVTHTYrtgglfgakQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 88 DARV--HGIETVYQNL--AVSPALDVasnlflgrEERLPGPLGSLFRiLDTKGMRKKAKEELTRLGISTLQDVTVPVEnL 163
Cdd:TIGR02769 82 QRRAfrRDVQLVFQDSpsAVNPRMTV--------RQIIGEPLRHLTS-LDESEQKARIAELLDMVGLRSEDADKLPRQ-L 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 164 SGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRI 232
Cdd:TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAfGTAYLFITHDLRLVQSFCQRV 221
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
6-78 |
1.09e-16 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 77.04 E-value: 1.09e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 6 FEAPRTETREPILKARNlvKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSG 78
Cdd:COG1134 17 YHEPSRSLKELLLRRRR--TRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG 87
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
32-247 |
1.35e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 77.56 E-value: 1.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 32 GLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHF----KRPQDARvHGIETVYQnlavSPAL 107
Cdd:PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPetgnKNLKKLR-KKVSLVFQ----FPEA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 108 DVASNLFLgrEERLPGPLGslFRILDTKGmRKKAKEELTRLGISTLQDVTVPVEnLSGGQRQAVAVARAAAFGSKVVVLD 187
Cdd:PRK13641 97 QLFENTVL--KDVEFGPKN--FGFSEDEA-KEKALKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMAYEPEILCLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 188 EPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK13641 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
7-239 |
1.44e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 78.89 E-value: 1.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 7 EAPRTETRepiLKARNLVKTfgrvvGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRP 86
Cdd:PRK10762 250 DKAPGEVR---LKVDNLSGP-----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 87 QDARVHGIetVYqnlaVSPALDvASNLFLGREERLPGPLGSLfRILDTKGMRKKAKEELTRLG-ISTLQDVTVP-----V 160
Cdd:PRK10762 322 QDGLANGI--VY----ISEDRK-RDGLVLGMSVKENMSLTAL-RYFSRAGGSLKHADEQQAVSdFIRLFNIKTPsmeqaI 393
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 161 ENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:PRK10762 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
19-231 |
1.70e-16 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 77.92 E-value: 1.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 19 KARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARV--H 92
Cdd:PRK11153 3 ELKNISKVFpqggRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKarR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIETVYQ--NLAVSPAldVASNLFLGREerLPGplgslfriLDTKGMRKKAKEELTRLGISTLQDvTVPvENLSGGQRQA 170
Cdd:PRK11153 83 QIGMIFQhfNLLSSRT--VFDNVALPLE--LAG--------TPKAEIKARVTELLELVGLSDKAD-RYP-AQLSGGQKQR 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 171 VAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADR 231
Cdd:PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDInRELGLTIVLITHEMDVVKRICDR 210
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
13-247 |
1.81e-16 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 78.07 E-value: 1.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 13 TREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH 92
Cdd:PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 gieTVYQNLAVSPALDVASNLFLGREerlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVTVP------VENLSGG 166
Cdd:PRK09452 90 ---TVFQSYALFPHMTVFENVAFGLR------------------MQKTPAAEITPRVMEALRMVQLEefaqrkPHQLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 167 QRQAVAVARAAAFGSKVVVLDEPTAALGVR----ESNQVLQLVRDLrdrGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:PRK09452 149 QQQRVAIARAVVNKPKVLLLDESLSALDYKlrkqMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225
|
....*
gi 1867925291 243 TITPQ 247
Cdd:PRK09452 226 DGTPR 230
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
8-239 |
1.98e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 78.19 E-value: 1.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 8 APRTETREPILKARNLVKTF-------GRVVG----LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAeVPDTGELFV 76
Cdd:COG4172 266 RPVPPDAPPLLEARDLKVWFpikrglfRRTVGhvkaVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRL-IPSEGEIRF 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 77 SGQQVHFKRPQDARV--HGIETVYQNlavspaldvasnlflgreerlpgPLGSL---FRILD--TKGMR----KKAKEEL 145
Cdd:COG4172 345 DGQDLDGLSRRALRPlrRRMQVVFQD-----------------------PFGSLsprMTVGQiiAEGLRvhgpGLSAAER 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 146 TRLGISTLQDVTVPVENL-------SGGqrqavavaraaafgsKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVIL 217
Cdd:COG4172 402 RARVAEALEEVGLDPAARhryphefSGGqrqriaiaralilepKLLVLDEPTSALDVSVQAQILDLLRDLqREHGLAYLF 481
|
250 260
....*....|....*....|..
gi 1867925291 218 ISHNMPHVFDVADRIHIQRLGK 239
Cdd:COG4172 482 ISHDLAVVRALAHRVMVMKDGK 503
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
33-232 |
2.05e-16 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 75.97 E-value: 2.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfKRPQDARVhgieTVYQNLAVSPALDVASN 112
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI--TEPGPDRM----VVFQNYSLLPWLTVREN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGREERLPGplgslfriLDTKGMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAA 192
Cdd:TIGR01184 75 IALAVDRVLPD--------LSKSERRAIVEEHIALVGLTEAADK--RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1867925291 193 L-GVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:TIGR01184 145 LdALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRV 185
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
17-222 |
2.30e-16 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 75.47 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGR-VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV---------HFKR- 85
Cdd:COG2884 1 MIRFENVSKRYPGgREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLsrlkrreipYLRRr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 ----PQDARVhgIE--TVYQNLAVspALDVAsnlflGREERLpgplgslfrildtkgMRKKAKEELTRLGISTLQDvTVP 159
Cdd:COG2884 81 igvvFQDFRL--LPdrTVYENVAL--PLRVT-----GKSRKE---------------IRRRVREVLDLVGLSDKAK-ALP 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 160 VEnLSGGqrqavavaraaafgsKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNM 222
Cdd:COG2884 136 HE-LSGGeqqrvaiaralvnrpELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDL 197
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
17-247 |
2.54e-16 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 76.09 E-value: 2.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTF-GRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGIE 95
Cdd:PRK10895 3 TLTAKNLAKAYkGRRV-VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 TVYQNLAVSPALDVASNLFLGREERlpgplgslfRILDTKGMRKKAKEELTRLGISTLQDVTVpvENLSGGQRQAVAVAR 175
Cdd:PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIR---------DDLSAEQREDRANELMEEFHIEHLRDSMG--QSLSGGERRRVEIAR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 176 AAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-232 |
2.64e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 77.05 E-value: 2.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTF----------GRVVGL-----------DGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELF 75
Cdd:COG4586 1 IIEVENLSKTYrvyekepglkGALKGLfrreyreveavDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 76 VSGqQVHFKRpQDARVHGIETV-------YQNLAVSPALDVasnlflgreerlpgpLGSLFRILDTKgmRKKAKEELT-R 147
Cdd:COG4586 81 VLG-YVPFKR-RKEFARRIGVVfgqrsqlWWDLPAIDSFRL---------------LKAIYRIPDAE--YKKRLDELVeL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 148 LGISTLqdVTVPVENLSggqrqavavaraaaFGS--------------KVVVLDEPTAALGVRESNQVLQLVRDL-RDRG 212
Cdd:COG4586 142 LDLGEL--LDTPVRQLS--------------LGQrmrcelaaallhrpKILFLDEPTIGLDVVSKEAIREFLKEYnRERG 205
|
250 260
....*....|....*....|
gi 1867925291 213 LPVILISHNMPHVFDVADRI 232
Cdd:COG4586 206 TTILLTSHDMDDIEALCDRV 225
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
33-247 |
2.68e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 76.18 E-value: 2.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVH-GIetVYQN-----LAVSPA 106
Cdd:PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKiGI--IFQNpdnqfIGATVE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 107 LDVAsnlfLGREERLpgplgslfriLDTKGMRKKAKEELTRLGISTLQDVTvPvENLSGGQRQAVAVARAAAFGSKVVVL 186
Cdd:PRK13632 103 DDIA----FGLENKK----------VPPKKMKDIIDDLAKKVGMEDYLDKE-P-QNLSGGQKQRVAIASVLALNPEIIIF 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 187 DEPTAALGVRESNQVLQLVRDLRDRGLP-VILISHNMPHVFdVADRIHIQRLGKCAATITPQ 247
Cdd:PRK13632 167 DESTSMLDPKGKREIKKIMVDLRKTRKKtLISITHDMDEAI-LADKVIVFSEGKLIAQGKPK 227
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
48-247 |
3.96e-16 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 76.76 E-value: 3.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 48 IIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhFKRPQDARvhGIETVYQNLAVSPALDVASNLFLGREerlpgplgs 127
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLR--HINMVFQSYALFPHMTVEENVAFGLK--------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 128 lfrildtkgMRKKAKEELTR-----LGISTLQDVTV--PVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQ 200
Cdd:TIGR01187 69 ---------MRKVPRAEIKPrvleaLRLVQLEEFADrkPHQ-LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1867925291 201 V-LQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:TIGR01187 139 MqLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPE 186
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-83 |
4.75e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 77.41 E-value: 4.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 5 EFEAPRtETREPILKARNLVKTFG-RVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGElFVSGQQVHF 83
Cdd:COG0488 304 RFPPPE-RLGKKVLELEGLSKSYGdKTL-LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGT-VKLGETVKI 380
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
33-247 |
5.39e-16 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 75.44 E-value: 5.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvHGIETVYQN-----LAVSPAL 107
Cdd:PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR-RQVGMVFQNpdnqfVGATVQD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 108 DVA---SNLFLGREERLPgplgslfRI---LDTKGMRKKAKEELTRlgistlqdvtvpvenLSGGQRQAVAVARAAAFGS 181
Cdd:PRK13635 102 DVAfglENIGVPREEMVE-------RVdqaLRQVGMEDFLNREPHR---------------LSGGQKQRVAIAGVLALQP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 182 KVVVLDEPTAALGVRESNQVLQLVRDLRD-RGLPVILISHNMPHVFDvADRIHIQRLGKCAATITPQ 247
Cdd:PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEqKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPE 225
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
7-232 |
6.29e-16 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 77.11 E-value: 6.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 7 EAPRTETREPILKARNLVKTF-GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKR 85
Cdd:COG4988 326 TAPLPAAGPPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLD 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHgIETVYQNlavsPAL---DVASNLFLGR----EERLpgplgslFRILDTKGmrkkAKEELTRL--GISTlqdv 156
Cdd:COG4988 406 PASWRRQ-IAWVPQN----PYLfagTIRENLRLGRpdasDEEL-------EAALEAAG----LDEFVAALpdGLDT---- 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 157 tvPVE----NLSGGqrqavavaraaafGSKVVVLDEPTAALGVRESNQVLQLVRDLRdRGLPVILISHNmPHVFDVADRI 232
Cdd:COG4988 466 --PLGeggrGLSGGqaqrlalarallrDAPLLLLDEPTAHLDAETEAEILQALRRLA-KGRTVILITHR-LALLAQADRI 541
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
11-223 |
8.90e-16 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 74.01 E-value: 8.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 11 TETREPILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhFKRP 86
Cdd:COG4181 2 SSSSAPIIELRGLTKTVgtgaGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDL-FALD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 87 QDARVH------GIetVYQNLAVSPALDVASNLFLGREERlpgplgslfrilDTKGMRKKAKEELTRLGISTLQDVTvPV 160
Cdd:COG4181 81 EDARARlrarhvGF--VFQSFQLLPTLTALENVMLPLELA------------GRRDARARARALLERVGLGHRLDHY-PA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 161 EnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMP 223
Cdd:COG4181 146 Q-LSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELnRERGTTLVLVTHDPA 208
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
13-232 |
1.21e-15 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 74.36 E-value: 1.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 13 TREPILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQd 88
Cdd:COG1116 3 AAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPD- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 89 arvHGIetVYQNLAVSPALDVASNLFLGreerlpgplgslfriLDTKGMRKKAKEE-----LTRLGistLQDVtvpvEN- 162
Cdd:COG1116 82 ---RGV--VFQEPALLPWLTVLDNVALG---------------LELRGVPKAERRErarelLELVG---LAGF----EDa 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 163 ----LSGGQRQAVAVARAAAFGSKVVVLDEPTAALGV--RESNQvlQLVRDL-RDRGLPVILISHNMPH-VFdVADRI 232
Cdd:COG1116 135 yphqLSGGMRQRVAIARALANDPEVLLMDEPFGALDAltRERLQ--DELLRLwQETGKTVLFVTHDVDEaVF-LADRV 209
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
33-246 |
1.33e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 74.27 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHF-KRPQDARVHGIETVYQN-----LAVSPA 106
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYsKRGLLALRQQVATVFQDpeqqiFYTDID 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 107 LDVASNLF-LG-REERLPGPLGSLFRILDTKGMRKKakeeltrlgistlqdvtvPVENLSGGQRQAVAVARAAAFGSKVV 184
Cdd:PRK13638 97 SDIAFSLRnLGvPEAEITRRVDEALTLVDAQHFRHQ------------------PIQCLSHGQKKRVAIAGALVLQARYL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 185 VLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITP 246
Cdd:PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
17-222 |
1.61e-15 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 73.89 E-value: 1.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV-HFKRPQDARvhGIE 95
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIsMLSSRQLAR--RLA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 TVYQNLAVSPALDVASNLFLGREerlpgPLGSLFRILDTKGmRKKAKEELTRLGISTLQDvtVPVENLSGGQRQAVAVAR 175
Cdd:PRK11231 80 LLPQHHLTPEGITVRELVAYGRS-----PWLSLWGRLSAED-NARVNQAMEQTRINHLAD--RRLTDLSGGQRQRAFLAM 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1867925291 176 AAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNM 222
Cdd:PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-232 |
4.06e-15 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 74.42 E-value: 4.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 3 TTEFEAPRTETREPILKARNLVKTF---GRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQ 79
Cdd:COG4987 319 VTEPAEPAPAPGGPSLELEDVSFRYpgaGRPV-LDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGV 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 80 QVHFKRPQDARvhgietvyQNLAV---SPAL---DVASNLFLGREE-------------RLPGPLGSLFRILDTK----- 135
Cdd:COG4987 398 DLRDLDEDDLR--------RRIAVvpqRPHLfdtTLRENLRLARPDatdeelwaalervGLGDWLAALPDGLDTWlgegg 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 136 -----GMRKkakeeltRLGI--STLQDvtvpvenlsggqrqavavaraaafgSKVVVLDEPTAALGVRESNQVLQLVRD- 207
Cdd:COG4987 470 rrlsgGERR-------RLALarALLRD-------------------------APILLLDEPTEGLDAATEQALLADLLEa 517
|
250 260
....*....|....*....|....*
gi 1867925291 208 LRDRGlpVILISHNmPHVFDVADRI 232
Cdd:COG4987 518 LAGRT--VLLITHR-LAGLERMDRI 539
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
31-247 |
4.23e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 73.28 E-value: 4.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 31 VGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFK------RPQDARVhGIetVYQnlavS 104
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKtkdkyiRPVRKRI-GM--VFQ----F 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 105 PaldvASNLFLGREER--LPGPLGslFRiLDTKGMRKKAKEELTRLGIStlQDV--TVPVEnLSGGQRQAVAVARAAAFG 180
Cdd:PRK13646 94 P----ESQLFEDTVEReiIFGPKN--FK-MNLDEVKNYAHRLLMDLGFS--RDVmsQSPFQ-MSGGQMRKIAIVSILAMN 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 181 SKVVVLDEPTAALGVRESNQVLQLVRDLR-DRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
15-239 |
4.90e-15 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 74.51 E-value: 4.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGL-----------DGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHF 83
Cdd:PRK10261 311 EPILQVRNLVTRFPLRSGLlnrvtrevhavEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 84 KRP---QDARvHGIETVYQNLAVS--PALDVASNLFlgreerlpGPLgSLFRILDTKGMRKKAKEELTRLGISTLQDVTV 158
Cdd:PRK10261 391 LSPgklQALR-RDIQFIFQDPYASldPRQTVGDSIM--------EPL-RVHGLLPGKAAAARVAWLLERVGLLPEHAWRY 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 159 PVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRL 237
Cdd:PRK10261 461 PHE-FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLqRDFGIAYLFISHDMAVVERISHRVAVMYL 539
|
..
gi 1867925291 238 GK 239
Cdd:PRK10261 540 GQ 541
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
37-232 |
5.40e-15 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 72.09 E-value: 5.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 37 SLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH----FKRPqdarvhgIETVYQ--NLAvsPALDVA 110
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTalppAERP-------VSMLFQenNLF--PHLTVA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 111 SNLFLGREERLpgplgslfRIldTKGMRKKAKEELTRLGISTLQDvTVPvENLSGGQRqavavaraaafgSKV------- 183
Cdd:COG3840 90 QNIGLGLRPGL--------KL--TAEQRAQVEQALERVGLAGLLD-RLP-GQLSGGQR------------QRValarclv 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 184 -----VVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:COG3840 146 rkrpiLLLDEPFSALDPALRQEMLDLVDELcRERGLTVLMVTHDPEDAARIADRV 200
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
18-220 |
7.11e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 71.24 E-value: 7.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvhGIETV 97
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHE--NILYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNL-FLGReerlpgplgslfrilDTKGMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARA 176
Cdd:TIGR01189 79 GHLPGLKPELSALENLhFWAA---------------IHGGAQRTIEDALAAVGLTGFEDL--PAAQLSAGQQRRLALARL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISH 220
Cdd:TIGR01189 142 WLSRRPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
18-220 |
7.64e-15 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 70.98 E-value: 7.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvhGIETV 97
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR--GLLYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNLflgreerlpgplgslfRILDTKGMRKKAKEELTRLGISTLQDvtVPVENLSGGQRQAVAVARAA 177
Cdd:cd03231 79 GHAPGIKTTLSVLENL----------------RFWHADHSDEQVEEALARVGLNGFED--RPVAQLSAGQQRRVALARLL 140
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISH 220
Cdd:cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
18-167 |
9.39e-15 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 72.80 E-value: 9.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDaRvhGIETV 97
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD-R--NIAMV 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 98 YQNLAVSPALDVASNLFLG-REERLPGPlgslfRIldtkgmRKKAKEELTRLGISTLQDVTVpvENLSGGQ 167
Cdd:COG3839 81 FQSYALYPHMTVYENIAFPlKLRKVPKA-----EI------DRRVREAAELLGLEDLLDRKP--KQLSGGQ 138
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
7-232 |
1.16e-14 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 73.09 E-value: 1.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 7 EAPRTETREPILKARNLVKTF-GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKR 85
Cdd:TIGR02857 311 KAPVTAAPASSLEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHgIETVYQNLAVSPAlDVASNLFLGREERLPGPLgslfrildtkgmrkkaKEELTRLGISTL-----QDVTVPV 160
Cdd:TIGR02857 391 ADSWRDQ-IAWVPQHPFLFAG-TIAENIRLARPDASDAEI----------------REALERAGLDEFvaalpQGLDTPI 452
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 161 ----ENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRdRGLPVILISHNmPHVFDVADRI 232
Cdd:TIGR02857 453 geggAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHR-LALAALADRI 526
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
15-238 |
1.35e-14 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 71.58 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCL----TGAEVPDTG-ELFVSGQQVHFKRPQDA 89
Cdd:PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLsgliTGDKSAGSHiELLGRTVQREGRLARDI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 90 RVHGIET--VYQNLAVSPALDVASNLFLGreerlpgPLGSL------FRILdTKGMRKKAKEELTRLGISTLQDVTVpvE 161
Cdd:PRK09984 82 RKSRANTgyIFQQFNLVNRLSVLENVLIG-------ALGSTpfwrtcFSWF-TREQKQRALQALTRVGMVHFAHQRV--S 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 162 NLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLG 238
Cdd:PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDInQNDGITVVVTLHQVDYALRYCERIVALRQG 229
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
18-234 |
1.35e-14 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 70.68 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGeVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKR----------PQ 87
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPqklrrrigylPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 88 DARVHGIETVYQNLAVSPALdvasnlflgreerlpgplgslfrildtKGMR-KKAKEELTRLgistLQDVTV------PV 160
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWL---------------------------KGIPsKEVKARVDEV----LELVNLgdrakkKI 128
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 161 ENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRglPVILISHNMPHVFDVADRIHI 234
Cdd:cd03264 129 GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELgEDR--IVILSTHIVEDVESLCNQVAV 201
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
17-244 |
1.44e-14 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 73.51 E-value: 1.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGRVV--GLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfkrpqdarVHGI 94
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI---------LTNI 2007
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPALDVASNLFLGREErlpgplgsLFRILDTKGMRKKAKEELTRLGISTLqDVTVPVENL----SGGQRQA 170
Cdd:TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREH--------LYLYARLRGVPAEEIEKVANWSIQSL-GLSLYADRLagtySGGNKRK 2078
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 171 VAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLG--KCAATI 244
Cdd:TIGR01257 2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGafQCLGTI 2154
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
33-232 |
1.68e-14 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 69.55 E-value: 1.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHgIETVYQnlavspalDVasN 112
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH-VGYLPQ--------DD--E 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLG--REERLPGplGSLFRILdtkgmrkkakeeLTRlgistlqdvtvpvenlsggqrqavavaraAAFGS-KVVVLDEP 189
Cdd:cd03246 87 LFSGsiAENILSG--GQRQRLG------------LAR-----------------------------ALYGNpRILVLDEP 123
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1867925291 190 TAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRI 232
Cdd:cd03246 124 NSHLDVEGERALNQAIAALKAAGATRIVIAHR-PETLASADRI 165
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
28-234 |
2.81e-14 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 69.87 E-value: 2.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQqvhfkrpqdarvhgietvyqnlaVSPAL 107
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-----------------------VSSLL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 108 DVASNL---FLGREE-RLpgpLGSLFRiLDTKGMRKKAKE--ELTRLGistlQDVTVPVENLSGGQRQAVAVARAAAFGS 181
Cdd:cd03220 90 GLGGGFnpeLTGRENiYL---NGRLLG-LSRKEIDEKIDEiiEFSELG----DFIDLPVKTYSSGMKARLAFAIATALEP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 182 KVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHI 234
Cdd:cd03220 162 DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALV 214
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
22-247 |
3.13e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 71.40 E-value: 3.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 22 NLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfkrPQDARVhgietVYQNL 101
Cdd:PRK13536 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV----PARARL-----ARARI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 102 AVSPALDVASNLFLGREERLpgPLGSLFrildtkGMRKKAKEEL--TRLGISTLQD-VTVPVENLSGGQRQAVAVARAAA 178
Cdd:PRK13536 117 GVVPQFDNLDLEFTVRENLL--VFGRYF------GMSTREIEAVipSLLEFARLESkADARVSDLSGGMKRRLTLARALI 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 179 FGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
18-230 |
3.37e-14 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 69.43 E-value: 3.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPD---TGELFVSGQQVHFKRPQDARVhGI 94
Cdd:COG4136 2 LSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPAEQRRI-GI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 etVYQNLAVSPALDVASNLFLGreerLPGPLGslfrildtKGMRKKAKEE-LTRLGISTLQDVTvpVENLSGGQRQAVAV 173
Cdd:COG4136 81 --LFQDDLLFPHLSVGENLAFA----LPPTIG--------RAQRRARVEQaLEEAGLAGFADRD--PATLSGGQRARVAL 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 174 ARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRD-LRDRGLPVILISHnmphvfDVAD 230
Cdd:COG4136 145 LRALLAEPRALLLDEPFSKLDAALRAQFREFVFEqIRQRGIPALLVTH------DEED 196
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
15-247 |
4.64e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 70.60 E-value: 4.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGI 94
Cdd:PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLavSPALDVASNLFL-GR---------EERLPGPLgslfrildtkgmrkkakeELTRLGistlQDVTVPVENLS 164
Cdd:PRK13537 85 VPQFDNL--DPDFTVRENLLVfGRyfglsaaaaRALVPPLL------------------EFAKLE----NKADAKVGELS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 165 GGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATI 244
Cdd:PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
...
gi 1867925291 245 TPQ 247
Cdd:PRK13537 221 APH 223
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-230 |
4.65e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 70.07 E-value: 4.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLT-----GAEVPDTGELFVSGQQVHFKRPQDAR 90
Cdd:PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNrmnelESEVRVEGRVEFFNQNIYERRVNLNR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 91 VH-GIETVYQNLAVSPaLDVASNLFLGreerlpgplgslfrildTKGMRKKAKEELTRLGISTLQDVTVPVE-------- 161
Cdd:PRK14258 86 LRrQVSMVHPKPNLFP-MSVYDNVAYG-----------------VKIVGWRPKLEIDDIVESALKDADLWDEikhkihks 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 162 --NLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRG-LPVILISHNMPHVFDVAD 230
Cdd:PRK14258 148 alDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSeLTMVIVSHNLHQVSRLSD 219
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
33-239 |
4.81e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 70.26 E-value: 4.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARV-HGIETVYQN-----LAVSPA 106
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLrESVGMVFQDpdnqlFSASVY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 107 LDVAsnlflgreerlpgpLGSLFRILDTKGMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSKVVVL 186
Cdd:PRK13636 102 QDVS--------------FGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK--PTHCLSFGQKKRVAIAGVLVMEPKVLVL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 187 DEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:PRK13636 166 DEPTAGLDPMGVSEIMKLLVEMqKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
15-231 |
5.62e-14 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 69.42 E-value: 5.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLT-----GAEVPDTGELFVSGQQVHFKRPQDA 89
Cdd:PRK14239 3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmndlNPEVTITGSIVYNGHNIYSPRTDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 90 RVHG-IETVYQNLAVSPaLDVASNLFLGreerlpgplgslfriLDTKGMRKKAK----EELTRLGISTLQDVTVPVEN-- 162
Cdd:PRK14239 83 DLRKeIGMVFQQPNPFP-MSIYENVVYG---------------LRLKGIKDKQVldeaVEKSLKGASIWDEVKDRLHDsa 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 163 --LSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRgLPVILISHNMPHVFDVADR 231
Cdd:PRK14239 147 lgLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDR 216
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
33-232 |
6.01e-14 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 71.02 E-value: 6.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGqqvhfkrpQDARVHGIETVYQNLAVSPALD---- 108
Cdd:COG2274 491 LDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDG--------IDLRQIDPASLRRQIGVVLQDVflfs 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 109 --VASNLFLGREERlpgPLGSLFRILDTKGmrkkAKEELTRL--GISTLqdVTVPVENLSGgqrqavavaraaafG---- 180
Cdd:COG2274 563 gtIRENITLGDPDA---TDEEIIEAARLAG----LHDFIEALpmGYDTV--VGEGGSNLSG--------------Gqrqr 619
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 181 ----------SKVVVLDEPTAALGVRESNQVLQLVRDLRdRGLPVILISHNMPHVfDVADRI 232
Cdd:COG2274 620 laiarallrnPRILILDEATSALDAETEAIILENLRRLL-KGRTVIIIAHRLSTI-RLADRI 679
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
15-227 |
6.71e-14 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 69.43 E-value: 6.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGL---------DGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKr 85
Cdd:PRK15112 2 ETLLEVRNLSKTFRYRTGWfrrqtveavKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHGIETVYQNLAVSpaldvasnlfLGREERLPGPLGSLFRI---LDTKGMRKKAKEELTRLGISTLQDVTVPvEN 162
Cdd:PRK15112 81 DYSYRSQRIRMIFQDPSTS----------LNPRQRISQILDFPLRLntdLEPEQREKQIIETLRQVGLLPDHASYYP-HM 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 163 LSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHN---MPHVFD 227
Cdd:PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKqGISYIYVTQHlgmMKHISD 218
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
33-241 |
7.03e-14 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 68.35 E-value: 7.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTG--AEVPDTGELFVSGQQVH---FKR-----PQDARVHGIETVYQNLA 102
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLDkrsFRKiigyvPQDDILHPTLTVRETLM 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 103 VSPALdvasnlflgreERLPGplgslfrildtkGMRKkakeeltRLGIsTLQDVTVPvenlsggqrqavavaraaafgsK 182
Cdd:cd03213 105 FAAKL-----------RGLSG------------GERK-------RVSI-ALELVSNP----------------------S 131
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 183 VVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPH-VFDVADRIHIQRLGKCA 241
Cdd:cd03213 132 LLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSeIFELFDKLLLLSQGRVI 191
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
16-246 |
7.72e-14 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 71.20 E-value: 7.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTF---GRVvGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfkrpqdarvH 92
Cdd:TIGR01257 927 PGVCVKNLVKIFepsGRP-AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE---------T 996
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIETVYQNLAVSPA-------LDVASNLFL-----GR---EERLpgplgSLFRILDTKGMRKKAKEEltrlgistlqdvt 157
Cdd:TIGR01257 997 NLDAVRQSLGMCPQhnilfhhLTVAEHILFyaqlkGRsweEAQL-----EMEAMLEDTGLHHKRNEE------------- 1058
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 158 vpVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDrGLPVILISHNMPHVFDVADRIHIQRL 237
Cdd:TIGR01257 1059 --AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIISQ 1135
|
....*....
gi 1867925291 238 GKCAATITP 246
Cdd:TIGR01257 1136 GRLYCSGTP 1144
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
28-246 |
7.99e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 69.43 E-value: 7.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfkrPQDARVHGIETVY--QNLAVSP 105
Cdd:PRK10575 23 GRTL-LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE---SWSSKAFARKVAYlpQQLPAAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 106 ALDVASNLFLGReerLP--GPLGSlFRILDtkgmRKKAKEELTRLGISTLQDVTVpvENLSGGQRQAVAVARAAAFGSKV 183
Cdd:PRK10575 99 GMTVRELVAIGR---YPwhGALGR-FGAAD----REKVEEAISLVGLKPLAHRLV--DSLSGGERQRAWIAMLVAQDSRC 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 184 VVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITP 246
Cdd:PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLsQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTP 232
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
18-74 |
9.18e-14 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 66.70 E-value: 9.18e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGEL 74
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
31-247 |
1.16e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 68.96 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 31 VGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH---------------FKRPQDARVHGIe 95
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSdeenlwdirnkagmvFQNPDNQIVATI- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 tVYQNLAVSPaldvaSNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVAR 175
Cdd:PRK13633 103 -VEEDVAFGP-----ENLGIPPEE-----------------IRERVDESLKKVGMYEYRRH--APHLLSGGQKQRVAIAG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 176 AAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDvADRIHIQRLGKCAATITPQ 247
Cdd:PRK13633 158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKyGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPK 229
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
34-238 |
1.23e-13 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 69.35 E-value: 1.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 34 DGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAeVPDT-GELFVSGQQVHFKRPQDARV--HGIETVYQN-LA-VSPALD 108
Cdd:PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGL-VKATdGEVAWLGKDLLGMKDDEWRAvrSDIQMIFQDpLAsLNPRMT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 109 VAsnlflgreERLPGPLGSLFRILDTKGMRKKAKEELTRLGIstLQDVT--VPVEnLSGGQRQAVAVARAAAFGSKVVVL 186
Cdd:PRK15079 117 IG--------EIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGL--LPNLInrYPHE-FSGGQCQRIGIARALILEPKLIIC 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 187 DEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLG 238
Cdd:PRK15079 186 DEPVSALDVSIQAQVVNLLQQLqREMGLSLIFIAHDLAVVKHISDRVLVMYLG 238
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
5-232 |
1.35e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.20 E-value: 1.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 5 EFE---APRTETREPILKARNLVKTFGrvvgldGVSLD-----LYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFv 76
Cdd:COG1245 326 EFEvhaPRREKEEETLVEYPDLTKSYG------GFSLEveggeIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVD- 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 77 SGQQVHFKrPQDARVHGIETVYQNLAVSPALDVASNLFlgrEERLPGPLGsLFRILDtkgmrKKAKE----ELTRLGIST 152
Cdd:COG1245 399 EDLKISYK-PQYISPDYDGTVEEFLRSANTDDFGSSYY---KTEIIKPLG-LEKLLD-----KNVKDlsggELQRVAIAA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 153 --LQDVtvpvenlsggqrqavavaraaafgsKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMpHVFD-V 228
Cdd:COG1245 469 clSRDA-------------------------DLYLLDEPSAHLDVEQRLAVAKAIRRFaENRGKTAMVVDHDI-YLIDyI 522
|
....
gi 1867925291 229 ADRI 232
Cdd:COG1245 523 SDRL 526
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
16-220 |
1.48e-13 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 68.35 E-value: 1.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTFG----RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfkRPQDARv 91
Cdd:COG4525 2 SMLTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVT--GPGADR- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 92 hGIetVYQNLAVSPALDVASNLFLGReeRLPGplgslfriLDTKGMRKKAKEELTRLGistLQDV-TVPVENLSGGQRQA 170
Cdd:COG4525 79 -GV--VFQKDALLPWLNVLDNVAFGL--RLRG--------VPKAERRARAEELLALVG---LADFaRRRIWQLSGGMRQR 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 171 VAVARAAAFGSKVVVLDEPTAALG--VRESNQVLqLVRDLRDRGLPVILISH 220
Cdd:COG4525 143 VGIARALAADPRFLLMDEPFGALDalTREQMQEL-LLDVWQRTGKGVFLITH 193
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
18-247 |
1.82e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 68.47 E-value: 1.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV-HFKRPQDARVHGIet 96
Cdd:PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIqHYASKEVARRIGL-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNlAVSPAlDVASNLFLGREERLPGPLGSLFRILDTKGMRKKAKEEltrlGISTLQDVTvpVENLSGGQRQAVAVARA 176
Cdd:PRK10253 86 LAQN-ATTPG-DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT----GITHLADQS--VDTLSGGQRQRAWIAMV 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
18-253 |
2.12e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 68.02 E-value: 2.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTG-----AEVPDTGELFVSGQQVhFKRPQDARVH 92
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRlielyPEARVSGEVYLDGQDI-FKMDVIELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIETVYQNLAVSPALDVASNLFLGREerlpgplgsLFRILDTKG-MRKKAKEELTR--LGISTLQDVTVPVENLSGGQRQ 169
Cdd:PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLK---------LNRLVKSKKeLQERVRWALEKaqLWDEVKDRLDAPAGKLSGGQQQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 170 AVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRdRGLPVILISHNMPHVFDVADRI------HIQRLGKCAAT 243
Cdd:PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVaflykgQIVEWGPTREV 232
|
250
....*....|
gi 1867925291 244 ITPQSHTMTD 253
Cdd:PRK14247 233 FTNPRHELTE 242
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
18-239 |
2.68e-13 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 67.30 E-value: 2.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTfgrVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGaEVPD----TGELFVSGQQVH---FKR----- 85
Cdd:cd03234 11 LKAKNWNKY---ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG-RVEGggttSGQILFNGQPRKpdqFQKcvayv 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHGIETVYQNLAVSPALdvasnlflgreeRLPGPlgslfrildTKGMRKKAKEELTRLGISTLQDV-TVPVENLS 164
Cdd:cd03234 87 RQDDILLPGLTVRETLTYTAIL------------RLPRK---------SSDAIRKKRVEDVLLRDLALTRIgGNLVKGIS 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 165 GGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHN-MPHVFDVADRIHIQRLGK 239
Cdd:cd03234 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQpRSDLFRLFDRILLLSSGE 221
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
33-232 |
2.69e-13 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 66.25 E-value: 2.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGqqvhfkrpQDARVHGIETVYQNLAV---SPAL-- 107
Cdd:cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG--------VDLRDLDLESLRKNIAYvpqDPFLfs 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 108 -DVASNLFLGRE-ERLpgplgSLFRILdtkgmrkkakeeltrlgistLQDvtvpvenlsggqrqavavaraaafgSKVVV 185
Cdd:cd03228 90 gTIRENILSGGQrQRI-----AIARAL--------------------LRD-------------------------PPILI 119
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1867925291 186 LDEPTAALGVRESNQVLQLVRDLRdRGLPVILISHNMPHVfDVADRI 232
Cdd:cd03228 120 LDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTI-RDADRI 164
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
22-247 |
3.37e-13 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 68.19 E-value: 3.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 22 NLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVhGIetVYQNL 101
Cdd:PRK10851 7 NIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV-GF--VFQHY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 102 AVSPALDVASNLFLG-----REERlpgplgslfriLDTKGMRKKAKEELTRLGISTLQDvTVPVEnLSGGQRQAVAVARA 176
Cdd:PRK10851 84 ALFRHMTVFDNIAFGltvlpRRER-----------PNAAAIKAKVTQLLEMVQLAHLAD-RYPAQ-LSGGQKQRVALARA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEElKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
17-82 |
4.21e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 68.42 E-value: 4.21e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 17 ILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVsGQQVH 82
Cdd:TIGR03719 322 VIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETVK 386
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
33-248 |
4.49e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 67.32 E-value: 4.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV-HFKRPQDAR-VHGIetVYQNlavspaldvA 110
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgDFSKLQGIRkLVGI--VFQN---------P 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 111 SNLFLGR--EERLPgpLGSLFRILDTKGMRKKAKEELTRLGISTLQDVTVpvENLSGGQRQAVAVARAAAFGSKVVVLDE 188
Cdd:PRK13644 87 ETQFVGRtvEEDLA--FGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP--KTLSGGQGQCVALAGILTMEPECLIFDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 189 PTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDvADRIHIQRLGKCAATITPQS 248
Cdd:PRK13644 163 VTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPEN 221
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
33-247 |
4.53e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 68.54 E-value: 4.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDT---GELFVSGQQVhfKRPQDARVHGIetVYQNLAVSPALDV 109
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVkgsGSVLLNGMPI--DAKEMRAISAY--VQQDDLFIPTLTV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 110 ASNLFLGREERLPgplgslfRILDTKGMRKKAKEELTRLGISTLQDVTVPVEN----LSGGQRQAVAVARAAAFGSKVVV 185
Cdd:TIGR00955 117 REHLMFQAHLRMP-------RRVTKKEKRERVDEVLQALGLRKCANTRIGVPGrvkgLSGGERKRLAFASELLTDPPLLF 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 186 LDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmP--HVFDVADRIHIQRLGKCAATITPQ 247
Cdd:TIGR00955 190 CDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQ-PssELFELFDKIILMAEGRVAYLGSPD 252
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
33-248 |
1.12e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 66.31 E-value: 1.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH------------------FKRPQDARVHgi 94
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknkdikqirkkvglvFQFPESQLFE-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPaldvaSNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVTVPVEnLSGGQRQAVAVA 174
Cdd:PRK13649 101 ETVLKDVAFGP-----QNFGVSQEE-----------------AEALAREKLALVGISESLFEKNPFE-LSGGQMRRVAIA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQS 248
Cdd:PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
17-82 |
1.38e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 67.07 E-value: 1.38e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 17 ILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVsGQQVH 82
Cdd:PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVK 388
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
3-241 |
1.48e-12 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 67.06 E-value: 1.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 3 TTEFEAPRTETREPILKARNLvkTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH 82
Cdd:PRK10982 236 TQRFPDKENKPGEVILEVRNL--TSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 83 FKRPQDARVHGIETVYQ---NLAVSPALDVASNLFLGREERLPGPLGslfrILDTKGMRKKAKEELTRLGISTLQDVTvP 159
Cdd:PRK10982 314 NHNANEAINHGFALVTEerrSTGIYAYLDIGFNSLISNIRNYKNKVG----LLDNSRMKSDTQWVIDSMRVKTPGHRT-Q 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 160 VENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
..
gi 1867925291 240 CA 241
Cdd:PRK10982 469 VA 470
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
15-221 |
1.55e-12 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 65.19 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGR----VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH-FKRPQDA 89
Cdd:PRK10584 4 ENIVEVHHLKKSVGQgeheLSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHqMDEEARA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 90 --RVHGIETVYQNLAVSPALDVASNLflgreeRLPGplgsLFRILDTKGMRKKAKEELTRLGISTLQDvTVPVEnLSGGQ 167
Cdd:PRK10584 84 klRAKHVGFVFQSFMLIPTLNALENV------ELPA----LLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQ-LSGGE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 168 RQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHN 221
Cdd:PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLnREHGTTLILVTHD 206
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
33-221 |
1.69e-12 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 66.62 E-value: 1.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARVHGIETVYQNLAVSpALDVASN 112
Cdd:TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVS-SLDQDEVRRRVSVCAQDAHLF-DTTVREN 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGREERLPGPLGSLFRildtkgmRKKAKEELTRL--GISTlqDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPT 190
Cdd:TIGR02868 429 LRLARPDATDEELWAALE-------RVGLADWLRALpdGLDT--VLGEGGARLSGGERQRLALARALLADAPILLLDEPT 499
|
170 180 190
....*....|....*....|....*....|...
gi 1867925291 191 AALGVRESnqvLQLVRDLRD--RGLPVILISHN 221
Cdd:TIGR02868 500 EHLDAETA---DELLEDLLAalSGRTVVLITHH 529
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
33-247 |
1.92e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 65.54 E-value: 1.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHgIETVYQNlavspaldvASN 112
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH-IGIVFQN---------PDN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGREERLPGPLGSLFRILDTKGMRKKAKEELTRLGISTLQDvTVPvENLSGGQRQAVAVARAAAFGSKVVVLDEPTAA 192
Cdd:PRK13648 95 QFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-YEP-NALSGGQKQRVAIAGVLALNPSVIILDEATSM 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 193 LGVRESNQVLQLVRDLR-DRGLPVILISHNMPHVFDvADRIHIQRLGKCAATITPQ 247
Cdd:PRK13648 173 LDPDARQNLLDLVRKVKsEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPT 227
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
18-261 |
2.19e-12 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 65.01 E-value: 2.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTF-GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHgIET 96
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK-IGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 97 VYQNLAVSPALDVASNLFLgreerLPGPLGslfriLDTKGMRKKAKE--ELTRLGISTLQDvTVPVEnLSGGQRQAVAVA 174
Cdd:cd03295 80 VIQQIGLFPHMTVEENIAL-----VPKLLK-----WPKEKIRERADEllALVGLDPAEFAD-RYPHE-LSGGQQQRVGVA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 175 RAAAFGSKVVVLDEPTAALG--VRESNQVlQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQS---H 249
Cdd:cd03295 148 RALAADPPLLLMDEPFGALDpiTRDQLQE-EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEilrS 226
|
250
....*....|..
gi 1867925291 250 TMTDAVAIMTGA 261
Cdd:cd03295 227 PANDFVAEFVGA 238
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
33-242 |
2.27e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 65.14 E-value: 2.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH--------------FKRPQDARVHGieTVY 98
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNaenekwvrskvglvFQDPDDQVFSS--TVW 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 99 QNLAVSPAldvasNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAA 178
Cdd:PRK13647 99 DDVAFGPV-----NMGLDKDE-----------------VERRVEEALKAVRMWDFRDK--PPYHLSYGQKKRVAIAGVLA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 179 FGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
33-232 |
2.39e-12 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 65.89 E-value: 2.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDgVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQ------QVHF----KRP-----QDARVHgietv 97
Cdd:COG4148 16 LD-VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEvlqdsaRGIFlpphRRRigyvfQEARLF----- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 yqnlavsPALDVASNLFLGREeRLPgplgslfrildtKGMRKKAKEELTR-LGISTLQDVtvPVENLSGGQrqavavara 176
Cdd:COG4148 90 -------PHLSVRGNLLYGRK-RAP------------RAERRISFDEVVElLGIGHLLDR--RPATLSGGE--------- 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 177 aafgsK--------------VVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRI 232
Cdd:COG4148 139 -----RqrvaigrallssprLLLMDEPLAALDLARKAEILPYLERLRDElDIPILYVSHSLDEVARLADHV 204
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
18-231 |
2.45e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 65.49 E-value: 2.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGR-----VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGEL-FVSGQQVHFKRPQDARV 91
Cdd:PRK13651 3 IKVKNIVKIFNKklpteLKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIeWIFKDEKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 92 HGIETVYQNLAVSPALDVAS--------------NLFLGREER--LPGPLgslfrildTKGMRKKAKEELTRLGISTlqd 155
Cdd:PRK13651 83 VLEKLVIQKTRFKKIKKIKEirrrvgvvfqfaeyQLFEQTIEKdiIFGPV--------SMGVSKEEAKKRAAKYIEL--- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 156 VTVPVE-------NLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDV 228
Cdd:PRK13651 152 VGLDESylqrspfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231
|
...
gi 1867925291 229 ADR 231
Cdd:PRK13651 232 TKR 234
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
36-246 |
2.74e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 65.14 E-value: 2.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 36 VSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFV--------SGQQ----------VHFKRPQDARVHgiETV 97
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVgdivvsstSKQKeikpvrkkvgVVFQFPESQLFE--ETV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPaldvaSNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVTVPVEnLSGGQRQAVAVARAA 177
Cdd:PRK13643 103 LKDVAFGP-----QNFGIPKEK-----------------AEKIAAEKLEMVGLADEFWEKSPFE-LSGGQMRRVAIAGIL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITP 246
Cdd:PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
16-235 |
2.86e-12 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 64.45 E-value: 2.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTF--GRVVG--LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQ---QVHFKRPQD 88
Cdd:PRK11629 4 ILLQCDNLCKRYqeGSVQTdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQpmsKLSSAAKAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 89 ARVHGIETVYQNLAVSP---ALD-VASNLFLGREERlpgplgslfrildtKGMRKKAKEELTRLGISTlQDVTVPVEnLS 164
Cdd:PRK11629 84 LRNQKLGFIYQFHHLLPdftALEnVAMPLLIGKKKP--------------AEINSRALEMLAAVGLEH-RANHRPSE-LS 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1867925291 165 GGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMphvfDVADRIHIQ 235
Cdd:PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELnRLQGTAFLVVTHDL----QLAKRMSRQ 215
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
21-116 |
3.18e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 65.44 E-value: 3.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDarvHGIETVYQN 100
Cdd:PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE---RGVGMVFQS 83
|
90
....*....|....*.
gi 1867925291 101 LAVSPALDVASNLFLG 116
Cdd:PRK11000 84 YALYPHLSVAENMSFG 99
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
33-242 |
4.05e-12 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 64.09 E-value: 4.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGaEVPDTGELFVSGQQV-HFKRPQDARVHG----------IETVYQNL 101
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAG-LLPGQGEILLNGRPLsDWSAAELARHRAylsqqqsppfAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 102 avspALDVASNLFLGREERLPGPLGSLFRILDtkgmrkkakeELTRlgistlqdvtvPVENLSGG-------QRQAVAVA 174
Cdd:COG4138 91 ----ALHQPAGASSEAVEQLLAQLAEALGLED----------KLSR-----------PLTQLSGGewqrvrlAAVLLQVW 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:COG4138 146 PTINPEGQLLLLDEPMNSLDVAQQAALDRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVA 213
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
15-220 |
5.56e-12 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 63.95 E-value: 5.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTG-ELFVSGQQVHFKRPQDARVH- 92
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEDVWELRKRi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 GIetvyqnlaVSPALD------------VASNLF--LGREERLpgplgslfrildTKGMRKKAKEELTRLGISTLQDVtv 158
Cdd:COG1119 81 GL--------VSPALQlrfprdetvldvVLSGFFdsIGLYREP------------TDEQRERARELLELLGLAHLADR-- 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 159 PVENLSGGQRqavavaraaafgsKVV-------------VLDEPTAALGVRESNQVLQLVRDLRDRGLP-VILISH 220
Cdd:COG1119 139 PFGTLSQGEQ-------------RRVliaralvkdpellILDEPTAGLDLGARELLLALLDKLAAEGAPtLVLVTH 201
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
33-239 |
7.50e-12 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 62.99 E-value: 7.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSG---QQVHfkrPQDARvHGIETVYQNlavspaldv 109
Cdd:cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGtdiRQLD---PADLR-RNIGYVPQD--------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 110 aSNLFLG--REE-RLPGPLGSLFRILdtkgmrkkakEELTRLGISTLQD---------VTVPVENLSGGQRQAVAVARAA 177
Cdd:cd03245 87 -VTLFYGtlRDNiTLGAPLADDERIL----------RAAELAGVTDFVNkhpngldlqIGERGRGLSGGQRQAVALARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQ-LVRDLRDRGLpvILISHNMPhVFDVADRIHIQRLGK 239
Cdd:cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKErLRQLLGDKTL--IIITHRPS-LLDLVDRIIVMDSGR 215
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
16-240 |
7.61e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 64.73 E-value: 7.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTFG------RVVglDGVSLDLYPGEVLAIIGDNGAGKS-TLIKCL----TGAEVPDTGELFVSGQQV-HF 83
Cdd:PRK15134 4 PLLAIENLSVAFRqqqtvrTVV--NDVSLQIEAGETLALVGESGSGKSvTALSILrllpSPPVVYPSGDIRFHGESLlHA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 84 KRPQDARVHG--IETVYQNLAVSpaLDVASNLflgrEERLPGPLgSLFRildtkGMRKKAKEE-----LTRLGI----ST 152
Cdd:PRK15134 82 SEQTLRGVRGnkIAMIFQEPMVS--LNPLHTL----EKQLYEVL-SLHR-----GMRREAARGeilncLDRVGIrqaaKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 153 LQDVTvpvENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADR 231
Cdd:PRK15134 150 LTDYP---HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELqQELNMGLLFITHNLSIVRKLADR 226
|
....*....
gi 1867925291 232 IHIQRLGKC 240
Cdd:PRK15134 227 VAVMQNGRC 235
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
37-231 |
8.18e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 63.06 E-value: 8.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 37 SLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQvHFKRPQDARvhGIETVYQNLAVSPALDVASNLFLG 116
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD-HTTTPPSRR--PVSMLFQENNLFSHLTVAQNIGLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 117 REerlPGplgslFRIldTKGMRKKAKEELTRLGISTLQDvTVPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVR 196
Cdd:PRK10771 96 LN---PG-----LKL--NAAQREKLHAIARQMGIEDLLA-RLPGQ-LSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
170 180 190
....*....|....*....|....*....|....*.
gi 1867925291 197 ESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADR 231
Cdd:PRK10771 164 LRQEMLTLVSQVcQERQLTLLMVSHSLEDAARIAPR 199
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
5-232 |
8.68e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 64.83 E-value: 8.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 5 EFE--APRTET-REPILKARNLVKTFGrvvgldGVSLD-----LYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFV 76
Cdd:PRK13409 325 EFEerPPRDESeRETLVEYPDLTKKLG------DFSLEveggeIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 77 SgQQVHFKrPQDARVHGIETVYQNLA-VSPALDvaSNLFlgrEERLPGPLGsLFRILDTkgmrkkakeeltrlgistlqd 155
Cdd:PRK13409 399 E-LKISYK-PQYIKPDYDGTVEDLLRsITDDLG--SSYY---KSEIIKPLQ-LERLLDK--------------------- 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 156 vtvPVENLSGGQRqavavaraaafgSKVVV------------LDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNM 222
Cdd:PRK13409 450 ---NVKDLSGGEL------------QRVAIaaclsrdadlylLDEPSAHLDVEQRLAVAKAIRRIaEEREATALVVDHDI 514
|
250
....*....|
gi 1867925291 223 PHVFDVADRI 232
Cdd:PRK13409 515 YMIDYISDRL 524
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
19-82 |
1.13e-11 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 63.18 E-value: 1.13e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 19 KARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH 82
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVA 66
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
33-239 |
1.22e-11 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 61.56 E-value: 1.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfkRPQDARVHGIETVYQnlavSPAL---DV 109
Cdd:cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS--DLEKALSSLISVLNQ----RPYLfdtTL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 110 ASNL---FLGRE-ERLpgplgSLFRILdtkgmrkkakeeltrlgistLQDVtvpvenlsggqrqavavaraaafgsKVVV 185
Cdd:cd03247 92 RNNLgrrFSGGErQRL-----ALARIL--------------------LQDA-------------------------PIVL 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 186 LDEPTAALGVRESNQVLQLVRD-LRDRglPVILISHNMPHVfDVADRIHIQRLGK 239
Cdd:cd03247 122 LDEPTVGLDPITERQLLSLIFEvLKDK--TLIWITHHLTGI-EHMDKILFLENGK 173
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
37-241 |
2.61e-11 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 61.42 E-value: 2.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 37 SLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH----FKRPqdarvhgIETVYQNLAVSPALDVASN 112
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTglapYQRP-------VSMLFQENNLFAHLTVRQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGREerlPGplgslfriLDTKGMRKKAKEELTR-LGISTLQDvTVPvENLSGGQRQAVAVARAAAFGSKVVVLDEPTA 191
Cdd:TIGR01277 91 IGLGLH---PG--------LKLNAEQQEKVVDAAQqVGIADYLD-RLP-EQLSGGQRQRVALARCLVRPNPILLLDEPFS 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 192 ALGVRESNQVLQLVRDLRD-RGLPVILISHNMPHVFDVADRIHIQRLGKCA 241
Cdd:TIGR01277 158 ALDPLLREEMLALVKQLCSeRQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
9-239 |
2.64e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 63.15 E-value: 2.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 9 PRTETREPILKARNLVKTfgrvvGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQD 88
Cdd:PRK15439 260 RQQAAGAPVLTVEDLTGE-----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 89 ARVHGIetVYQnlavsPALDVASNLFLgreerlPGPLG-----------SLFrildTKGMRKKAKEELTR--LGIStLQD 155
Cdd:PRK15439 335 RLARGL--VYL-----PEDRQSSGLYL------DAPLAwnvcalthnrrGFW----IKPARENAVLERYRraLNIK-FNH 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 156 VTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQ 235
Cdd:PRK15439 397 AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM 476
|
....
gi 1867925291 236 RLGK 239
Cdd:PRK15439 477 HQGE 480
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
13-235 |
2.88e-11 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 61.65 E-value: 2.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 13 TREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDAR-- 90
Cdd:PRK10247 3 ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRqq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 91 ---------VHGiETVYQNLAvspaldvasnlflgreerLPgplgslFRILDTKGMRKKAKEELTRLGI--STLQDvtvP 159
Cdd:PRK10247 83 vsycaqtptLFG-DTVYDNLI------------------FP------WQIRNQQPDPAIFLDDLERFALpdTILTK---N 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 160 VENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGvrESNQvlQLVRDL-----RDRGLPVILISHNMPHVFDVADRIHI 234
Cdd:PRK10247 135 IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD--ESNK--HNVNEIihryvREQNIAVLWVTHDKDEINHADKVITL 210
|
.
gi 1867925291 235 Q 235
Cdd:PRK10247 211 Q 211
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
33-232 |
2.96e-11 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 63.23 E-value: 2.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVH------FKR-----PQDarvhgIE----TV 97
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSqwdreeLGRhigylPQD-----VElfdgTI 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLA----VSPALDVASNLFLGREE---RLPgplgslfrildtKGMRkkakeelTRLGISTLqdvtvpveNLSGGqrqa 170
Cdd:COG4618 423 AENIArfgdADPEKVVAAAKLAGVHEmilRLP------------DGYD-------TRIGEGGA--------RLSGGqrqr 475
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 171 vavaraaaFGS-KVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRI 232
Cdd:COG4618 476 ig-laralYGDpRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHR-PSLLAAVDKL 536
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
33-232 |
4.01e-11 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 61.35 E-value: 4.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHGIETVYQNLAVSPAldVASN 112
Cdd:cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRS--IRDN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGReerlPGPlgSLFRILDTKGMrKKAKEELTRLGISTLQDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAA 192
Cdd:cd03252 96 IALAD----PGM--SMERVIEAAKL-AGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1867925291 193 LGVRESNQVLQLVRDLRDrGLPVILISHNMPHVFDvADRI 232
Cdd:cd03252 169 LDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVKN-ADRI 206
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
33-246 |
4.10e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 61.74 E-value: 4.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGE---LFVSGQQVHFKRPQDARVH-GIetVYQNlavspald 108
Cdd:PRK13640 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskITVDGITLTAKTVWDIREKvGI--VFQN-------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 109 vASNLFLGREERLPGPLGSLFRILDTKGMRKKAKEELTRLGISTLQDvTVPvENLSGGQRQAVAVARAAAFGSKVVVLDE 188
Cdd:PRK13640 93 -PDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-SEP-ANLSGGQKQRVAIAGILAVEPKIIILDE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 189 PTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVfDVADRIHIQRLGKCAATITP 246
Cdd:PRK13640 170 STSMLDPAGKEQILKLIRKLkKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSP 227
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
17-246 |
5.05e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 61.65 E-value: 5.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTFGR---VVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvHG 93
Cdd:PRK13642 4 ILEVENLVFKYEKesdVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR-RK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IETVYQNlavspaldvASNLFLGREERLPGPLGSLFRILDTKGMRKKAKEELtrLGISTLQDVTVPVENLSGGQRQAVAV 173
Cdd:PRK13642 83 IGMVFQN---------PDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEAL--LAVNMLDFKTREPARLSGGQKQRVAV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 174 ARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDvADRIHIQRLGKCAATITP 246
Cdd:PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKyQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAP 224
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
33-222 |
5.48e-11 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 60.66 E-value: 5.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSG--------QQVHFKRP------QDARVHGIETVY 98
Cdd:PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGhditrlknREVPFLRRqigmifQDHHLLMDRTVY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 99 QNLAVSPALDVASNLFLGREerlpgplgsLFRILDTKGMRKKAKeeltrlgistlqdvTVPVEnLSGGQRQAVAVARAAA 178
Cdd:PRK10908 98 DNVAIPLIIAGASGDDIRRR---------VSAALDKVGLLDKAK--------------NFPIQ-LSGGEQQRVGIARAVV 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1867925291 179 FGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNM 222
Cdd:PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
21-247 |
5.98e-11 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 61.66 E-value: 5.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARvhGIETVYQN 100
Cdd:PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT-HRSIQQR--DICMVFQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 101 LAVSPALDVASN-------LFLGREERlpgplgslfrildtkgmRKKAKEELTRLGISTLQDVTvpVENLSGGQRQAVAV 173
Cdd:PRK11432 87 YALFPHMSLGENvgyglkmLGVPKEER-----------------KQRVKEALELVDLAGFEDRY--VDQISGGQQQRVAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 174 ARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
36-81 |
6.04e-11 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 62.12 E-value: 6.04e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1867925291 36 VSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV 81
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPV 396
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
18-221 |
6.81e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 60.27 E-value: 6.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQdARVHGIEtv 97
Cdd:PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA-EACHYLG-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNlAVSPALDVASNL-----FLGREERLPGplgslfrildtkgmrkkakEELTRLGISTLQDvtVPVENLSGGQRQAVA 172
Cdd:PRK13539 80 HRN-AMKPALTVAENLefwaaFLGGEELDIA-------------------AALEAVGLAPLAH--LPFGYLSAGQKRRVA 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1867925291 173 VARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHN 221
Cdd:PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
22-222 |
1.21e-10 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 60.09 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 22 NLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV-HFKRPQDARVHG-IETVYQ 99
Cdd:PRK10419 17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLaKLNRAQRKAFRRdIQMVFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 100 NL--AVSPALDVASNLflgREerlpgPLGSLFRiLDTKGMRKKAKEELTRLGIsTLQDVTVPVENLSGGQRQAVAVARAA 177
Cdd:PRK10419 97 DSisAVNPRKTVREII---RE-----PLRHLLS-LDKAERLARASEMLRAVDL-DDSVLDKRPPQLSGGQLQRVCLARAL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1867925291 178 AFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNM 222
Cdd:PRK10419 167 AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQfGTACLFITHDL 212
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
32-246 |
1.27e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 60.41 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 32 GLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV-----HFKRPQDARVH-GI----------- 94
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpanlkKIKEVKRLRKEiGLvfqfpeyqlfq 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 ETVYQNLAVSPAldvasNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGISTLQDVTVPVEnLSGGQRQAVAVA 174
Cdd:PRK13645 106 ETIEKDIAFGPV-----NLGENKQE-----------------AYKKVPELLKLVQLPEDYVKRSPFE-LSGGQKRRVALA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 175 RAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITP 246
Cdd:PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
33-222 |
1.83e-10 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 59.71 E-value: 1.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfKRPQDARvhGIetVYQNLAVSPALDVASN 112
Cdd:PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV--EGPGAER--GV--VFQNEGLLPWRNVQDN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLG-------REERlpgplgslfrildtkgmRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSKVVV 185
Cdd:PRK11248 91 VAFGlqlagveKMQR-----------------LEIAHQMLKKVGLEGAEKR--YIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190
....*....|....*....|....*....|....*....
gi 1867925291 186 LDEPTAALGV--RESNQVLqLVRDLRDRGLPVILISHNM 222
Cdd:PRK11248 152 LDEPFGALDAftREQMQTL-LLKLWQETGKQVLLITHDI 189
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
33-232 |
1.86e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 59.68 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTG-AEVPDTgELFVSGQQVHFKRpQDARVHGIE------TVYQNLAVSP 105
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRlIEIYDS-KIKVDGKVLYFGK-DIFQIDAIKlrkevgMVFQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 106 ALDVASNLFLgreerlpgPLGSlFRILDTKGMRKKAKEELTRLGI--STLQDVTVPVENLSGGQRQAVAVARAAAFGSKV 183
Cdd:PRK14246 104 HLSIYDNIAY--------PLKS-HGIKEKREIKKIVEECLRKVGLwkEVYDRLNSPASQLSGGQQQRLTIARALALKPKV 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1867925291 184 VVLDEPTAALGVRESNQVLQLVRDLRDRgLPVILISHNMPHVFDVADRI 232
Cdd:PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYV 222
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
32-247 |
2.06e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 59.65 E-value: 2.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 32 GLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHF-KRPQDARVH----GI-----------E 95
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAgKKNKKLKPLrkkvGIvfqfpehqlfeE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 TVYQNLAVSPaldvaSNLFLGREErlpgplgslfrildtkgMRKKAKEELTRLGIStlQDVTV--PVEnLSGGQRQAVAV 173
Cdd:PRK13634 102 TVEKDICFGP-----MNFGVSEED-----------------AKQKAREMIELVGLP--EELLArsPFE-LSGGQMRRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 174 ARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITPQ 247
Cdd:PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
15-240 |
2.09e-10 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 60.47 E-value: 2.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFG----RVVGLDGVSLDLYPGEVLAIIGDNGAGKS----TLIKCLTGAEVPDTGELFVSGQQ-VHFKR 85
Cdd:COG4172 4 MPLLSVEDLSVAFGqgggTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDlLGLSE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHG--IETVYQNLAVS--PALDVasnlflGRE--ERLpgplgSLFRILDTKGMRKKAKEELTRLGIstlQDVTVP 159
Cdd:COG4172 84 RELRRIRGnrIAMIFQEPMTSlnPLHTI------GKQiaEVL-----RLHRGLSGAAARARALELLERVGI---PDPERR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 160 VE----NLSGGqrqavavaraaafgsKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHI 234
Cdd:COG4172 150 LDayphQLSGGqrqrvmiamalanepDLLIADEPTTALDVTVQAQILDLLKDLqRELGMALLLITHDLGVVRRFADRVAV 229
|
....*.
gi 1867925291 235 QRLGKC 240
Cdd:COG4172 230 MRQGEI 235
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
3-239 |
2.37e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 60.37 E-value: 2.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 3 TTEFEAPRTETREPILKARNLVKTFG-RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV 81
Cdd:PRK10522 308 KAEFPRPQAFPDWQTLELRNVTFAYQdNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 82 HFKRPQDARVHgIETVYQnlavspalDVasNLFlgreERLPGPLGS------LFRILDTKGMRKKAKEELTRlgISTLQd 155
Cdd:PRK10522 388 TAEQPEDYRKL-FSAVFT--------DF--HLF----DQLLGPEGKpanpalVEKWLERLKMAHKLELEDGR--ISNLK- 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 156 vtvpvenLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGV---RESNQVLqLVRdLRDRGLPVILISHNmPHVFDVADRI 232
Cdd:PRK10522 450 -------LSKGQKKRLALLLALAEERDILLLDEWAADQDPhfrREFYQVL-LPL-LQEMGKTIFAISHD-DHYFIHADRL 519
|
....*..
gi 1867925291 233 HIQRLGK 239
Cdd:PRK10522 520 LEMRNGQ 526
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
18-73 |
2.42e-10 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 60.29 E-value: 2.42e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGE 73
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
38-259 |
2.78e-10 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 58.71 E-value: 2.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 38 LDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGqqvhfKRPQDARVHgIETVYQ--NLAVSPALDVASNLFL 115
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRH-IGYVPQrhEFAWDFPISVAHTVMS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 116 GREERLpGPLGSLfRILDTKGMRkkakEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGV 195
Cdd:TIGR03771 75 GRTGHI-GWLRRP-CVADFAAVR----DALRRVGLTELADR--PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 196 RESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRlGKCAATITPQShtMTDAVAIMT 259
Cdd:TIGR03771 147 PTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQ--LQDPAPWMT 207
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
9-222 |
3.14e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 60.10 E-value: 3.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 9 PRTETREPILKARNLVKTFG-------RVVG----LDGVSLDLYPGEVLAIIGDNGAGKSTlikclTGAE----VPDTGE 73
Cdd:PRK15134 267 PLPEPASPLLDVEQLQVAFPirkgilkRTVDhnvvVKNISFTLRPGETLGLVGESGSGKST-----TGLAllrlINSQGE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 74 LFVSGQQVH-FKRPQDARV-HGIETVYQ--NLAVSPALDVASNLFLGREERLPgplgslfrILDTKGMRKKAKEELTRLG 149
Cdd:PRK15134 342 IWFDGQPLHnLNRRQLLPVrHRIQVVFQdpNSSLNPRLNVLQIIEEGLRVHQP--------TLSAAQREQQVIAVMEEVG 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 150 ISTLQDVTVPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNM 222
Cdd:PRK15134 414 LDPETRHRYPAE-FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKhQLAYLFISHDL 486
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
33-246 |
3.45e-10 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 59.07 E-value: 3.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGaEVPD---------TGELFVSGQQVH-FKRPQDARVHGIetVYQNLA 102
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGggaprgarvTGDVTLNGEPLAaIDAPRLARLRAV--LPQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 103 VSPALDVASNLFLGR--EERLPGPLgslfrildTKGMRKKAKEELTRLGISTL--QDVTvpveNLSGGQRQAVA------ 172
Cdd:PRK13547 94 PAFAFSAREIVLLGRypHARRAGAL--------THRDGEIAWQALALAGATALvgRDVT----TLSGGELARVQfarvla 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 173 ---VARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITP 246
Cdd:PRK13547 162 qlwPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLaRDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
16-231 |
3.49e-10 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 58.74 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV------HFKR---- 85
Cdd:PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDItdwqtaKIMReava 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 --PQDARVHGIETVYQNLAVSpALDVASNLFLGREERLPGPLGSLFrildtkgmrkkaKEELTRLGistlqdvtvpveNL 163
Cdd:PRK11614 84 ivPEGRRVFSRMTVEENLAMG-GFFAERDQFQERIKWVYELFPRLH------------ERRIQRAG------------TM 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 164 SGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADR 231
Cdd:PRK11614 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR 206
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
15-246 |
3.77e-10 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 59.66 E-value: 3.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSG---QQVHFKRPQDARV 91
Cdd:PRK10070 26 EQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGvdiAKISDAELREVRR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 92 HGIETVYQNLAVSPALDVASNLFLGREerLPGplgslfriLDTKGMRKKAKEELTRLGISTLQDvTVPVEnLSGGQRQAV 171
Cdd:PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGME--LAG--------INAEERREKALDALRQVGLENYAH-SYPDE-LSGGMRQRV 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 172 AVARAAAFGSKVVVLDEPTAALG--VRESNQVlQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAATITP 246
Cdd:PRK10070 174 GLARALAINPDILLMDEAFSALDplIRTEMQD-ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTP 249
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-231 |
3.91e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 58.95 E-value: 3.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 8 APRTETREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTgaEVPD-------TGELFVSGQQ 80
Cdd:PRK14271 12 AADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN--RMNDkvsgyrySGDVLLGGRS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 81 VHFKRPQDARVHGIETVYQNLAVSPaLDVASNLFLGREERlpgplgslfRILDTKGMRKKAKEELTRLGI-STLQD-VTV 158
Cdd:PRK14271 90 IFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH---------KLVPRKEFRGVAQARLTEVGLwDAVKDrLSD 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 159 PVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRgLPVILISHNMPHVFDVADR 231
Cdd:PRK14271 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDR 231
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
16-239 |
4.79e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 58.50 E-value: 4.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAevPD----TGELFVSGQQVHFKRPqDARV 91
Cdd:CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAykilEGDILFKGESILDLEP-EERA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 92 H-GIETVYQN----LAVSPA--LDVASN---LFLGREERlpGPLgSLFRILDTK----GMRKKAkeeLTRlgistlqDVT 157
Cdd:CHL00131 83 HlGIFLAFQYpieiPGVSNAdfLRLAYNskrKFQGLPEL--DPL-EFLEIINEKlklvGMDPSF---LSR-------NVN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 158 vpvENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHnMPHVFD--VADRIHIQ 235
Cdd:CHL00131 150 ---EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH-YQRLLDyiKPDYVHVM 225
|
....
gi 1867925291 236 RLGK 239
Cdd:CHL00131 226 QNGK 229
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
8-82 |
8.55e-10 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 57.74 E-value: 8.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 8 APRTETREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCL-------TGAEVpdTGELFVSGQQ 80
Cdd:COG1117 2 TAPASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmndliPGARV--EGEILLDGED 79
|
..
gi 1867925291 81 VH 82
Cdd:COG1117 80 IY 81
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
21-222 |
1.07e-09 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 57.43 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELfvsgqqvhfKRPQDARvhgIETVYQN 100
Cdd:PRK09544 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---------KRNGKLR---IGYVPQK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 101 LAVSPALdvasnlflgreerlpgPLgSLFRILDTKGMRKKAK--EELTRLGISTLQDvtVPVENLSGGQRQAVAVARAAA 178
Cdd:PRK09544 76 LYLDTTL----------------PL-TVNRFLRLRPGTKKEDilPALKRVQAGHLID--APMQKLSGGETQRVLLARALL 136
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1867925291 179 FGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-GLPVILISHNM 222
Cdd:PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRElDCAVLMVSHDL 181
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
36-242 |
1.50e-09 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 56.86 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 36 VSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAeVPDTGELFVSGQQV-HFKRPQDARVHG----------IETVYQNLAVS 104
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLeAWSAAELARHRAylsqqqtppfAMPVFQYLTLH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 105 -PAL----DVASNL-----FLGREERLPGPLGSLF-----RIldtkgmrkkakeeltRLGISTLQdvTVPVENLSGgqrq 169
Cdd:PRK03695 94 qPDKtrteAVASALnevaeALGLDDKLGRSVNQLSggewqRV---------------RLAAVVLQ--VWPDINPAG---- 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 170 avavaraaafgsKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:PRK03695 153 ------------QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
42-234 |
1.52e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 57.87 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 42 PGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGEL-----------FVSGQ--QVHFKRPQDARvhgIETVYQNLAVspalD 108
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLGDYdeepswdevlkRFRGTelQDYFKKLANGE---IKVAHKPQYV----D 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 109 VASNLFLGREERLpgplgslfriLDTKGMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSKVVVLDE 188
Cdd:COG1245 171 LIPKVFKGTVREL----------LEKVDERGKLDELAEKLGLENILDR--DISELSGGELQRVAIAAALLRDADFYFFDE 238
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1867925291 189 PTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPhVFD-VADRIHI 234
Cdd:COG1245 239 PSSYLDIYQRLNVARLIRELAEEGKYVLVVEHDLA-ILDyLADYVHI 284
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
33-225 |
4.37e-09 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 56.65 E-value: 4.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV-----HFKRPQDARVhGIETVyqnlavspal 107
Cdd:TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLvqydhHYLHRQVALV-GQEPV---------- 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 108 dvasnLFLGReerlpgplgslFRILDTKGMRKKAKEELTRL---------------GISTlqDVTVPVENLSGGQRQAVA 172
Cdd:TIGR00958 566 -----LFSGS-----------VRENIAYGLTDTPDEEIMAAakaanahdfimefpnGYDT--EVGEKGSQLSGGQKQRIA 627
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 173 VARAAAFGSKVVVLDEPTAALGVrESNQVLQLVRDLRDRglPVILISHNMPHV 225
Cdd:TIGR00958 628 IARALVRKPRVLILDEATSALDA-ECEQLLQESRSRASR--TVLLIAHRLSTV 677
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
12-248 |
5.33e-09 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 55.54 E-value: 5.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 12 ETREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfkrPQDARV 91
Cdd:PRK11831 2 QSVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENI----PAMSRS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 92 HGIET------VYQNLAVSPALDVASNL-FLGREE-RLPGPL--GSLFRILDTKGMRKKAKeeltrlgistlqdvTVPVE 161
Cdd:PRK11831 78 RLYTVrkrmsmLFQSGALFTDMNVFDNVaYPLREHtQLPAPLlhSTVMMKLEAVGLRGAAK--------------LMPSE 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 162 nLSGGQRQAVAVARAAAFGSKVVVLDEPTAA-----LGVresnqVLQLVRDLRDR-GLPVILISHNMPHVFDVADRIHIQ 235
Cdd:PRK11831 144 -LSGGMARRAALARAIALEPDLIMFDEPFVGqdpitMGV-----LVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIV 217
|
250
....*....|...
gi 1867925291 236 RLGKCAATITPQS 248
Cdd:PRK11831 218 ADKKIVAHGSAQA 230
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
18-243 |
5.43e-09 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 54.46 E-value: 5.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNL-VKTFGRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGaeVPDT----GELFVSGQQVHFKRPQD-ARV 91
Cdd:cd03217 1 LEIKDLhVSVGGKEI-LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYevteGEILFKGEDITDLPPEErARL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 92 hGIETVYQNlavsPAldvasnlflgreeRLPG-PLGSLFRILDtkgmrkkakeeltrlgistlqdvtvpvENLSGGQRQA 170
Cdd:cd03217 78 -GIFLAFQY----PP-------------EIPGvKNADFLRYVN---------------------------EGFSGGEKKR 112
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 171 VAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFD--VADRIHIQRLGKCAAT 243
Cdd:cd03217 113 NEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY-QRLLDyiKPDRVHVLYDGRIVKS 186
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-243 |
6.26e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 56.02 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 17 ILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKS----TLIKCL--TGAEVPDTGELFVS-GQQV---- 81
Cdd:PRK10261 12 VLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSvtalALMRLLeqAGGLVQCDKMLLRRrSRQViels 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 82 HFKRPQDARVHG--IETVYQNLAVS--PALDVASNLF--------LGREERLpgplgslfrildtkgmrKKAKEELTRLG 149
Cdd:PRK10261 92 EQSAAQMRHVRGadMAMIFQEPMTSlnPVFTVGEQIAesirlhqgASREEAM-----------------VEAKRMLDQVR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 150 ISTLQDVTVPV-ENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFD 227
Cdd:PRK10261 155 IPEAQTILSRYpHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLqKEMSMGVIFITHDMGVVAE 234
|
250
....*....|....*.
gi 1867925291 228 VADRIHIQRLGKCAAT 243
Cdd:PRK10261 235 IADRVLVMYQGEAVET 250
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
15-230 |
7.16e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 55.17 E-value: 7.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKC-------LTGAEVpdTGELFVSGQQVHFKR-- 85
Cdd:PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrlndlIPGFRV--EGKVTFHGKNLYAPDvd 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 86 PQDARVHgIETVYQNLAVSPAlDVASNLFLGreERLPGPLGSLFRILDtKGMRKKA-----KEELTRLGIStlqdvtvpv 160
Cdd:PRK14243 86 PVEVRRR-IGMVFQKPNPFPK-SIYDNIAYG--ARINGYKGDMDELVE-RSLRQAAlwdevKDKLKQSGLS--------- 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 161 enLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRgLPVILISHNMPHVFDVAD 230
Cdd:PRK14243 152 --LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSD 218
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
28-242 |
7.56e-09 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 55.82 E-value: 7.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSG---QQVHFKR--------PQDarvhgIE- 95
Cdd:TIGR01842 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGadlKQWDRETfgkhigylPQD-----VEl 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 ---TVYQNLA-----VSPALDVASNLFLGREE---RLPGplgslfrildtkgmrkkakeeltrlGISTlqDVTVPVENLS 164
Cdd:TIGR01842 404 fpgTVAENIArfgenADPEKIIEAAKLAGVHElilRLPD-------------------------GYDT--VIGPGGATLS 456
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 165 GGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRIHIQRLGKCAA 242
Cdd:TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR-PSLLGCVDKILVLQDGRIAR 533
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
33-239 |
9.04e-09 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 55.49 E-value: 9.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHgIETVYQNLAVspaLD--VA 110
Cdd:TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ-VALVSQDVVL---FNdtIA 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 111 SNLFLGREERLPGPlgslfRILDTKGMrKKAKEELTRLGISTLQDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPT 190
Cdd:TIGR02203 424 NNIAYGRTEQADRA-----EIERALAA-AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1867925291 191 AALGvRESNQVLQLVRDLRDRGLPVILISHNMPHVfDVADRIHIQRLGK 239
Cdd:TIGR02203 498 SALD-NESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRIVVMDDGR 544
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
18-234 |
1.05e-08 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 54.30 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNL-VKTFGRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTG--AEVPDTGELFVSGQQVhFKRPQDARVH-G 93
Cdd:COG0396 1 LEIKNLhVSVEGKEI-LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGhpKYEVTSGSILLDGEDI-LELSPDERARaG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 94 IetvyqnlavspaldvasnlFLG--REERLPG-PLGSLFRI---------LDTKGMRKKAKEELTRLGIStlQD-VTVPV 160
Cdd:COG0396 79 I-------------------FLAfqYPVEIPGvSVSNFLRTalnarrgeeLSAREFLKLLKEKMKELGLD--EDfLDRYV 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 161 -ENLSGGQRQAVAVARAAAFGSKVVVLDEPTA-----ALGVresnqVLQLVRDLRDRGLPVILISHNmPHVFD--VADRI 232
Cdd:COG0396 138 nEGFSGGEKKRNEILQMLLLEPKLAILDETDSgldidALRI-----VAEGVNKLRSPDRGILIITHY-QRILDyiKPDFV 211
|
..
gi 1867925291 233 HI 234
Cdd:COG0396 212 HV 213
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
33-220 |
1.07e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 53.80 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfKRPQDARVHGIETVYQNLAVSPALDVASN 112
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI--KKDLCTYQKQLCFVGHRSGINPYLTLREN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 lflgreerlpgplgSLFRILDTKGmrKKAKEELTRLgISTLQDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAA 192
Cdd:PRK13540 95 --------------CLYDIHFSPG--AVGITELCRL-FSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157
|
170 180
....*....|....*....|....*...
gi 1867925291 193 LGVRESNQVLQLVRDLRDRGLPVILISH 220
Cdd:PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
39-195 |
1.32e-08 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 53.95 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 39 DLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKrPQDarvhgIETVYQnlavspaldvasnlflGRE 118
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-PQY-----IKADYE----------------GTV 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 119 ERLpgplgsLFRILDTKGMRKKAKEELTR-LGISTLQDVTVPveNLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGV 195
Cdd:cd03237 79 RDL------LSSITKDFYTHPYFKTEIAKpLQIEQILDREVP--ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
43-230 |
1.78e-08 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 54.12 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 43 GEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfkrpQDARVHGIETVYQNLAVS---PALdVASNLFLGREe 119
Cdd:PRK15056 33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKNLVAYVPQSEEVDwsfPVL-VEDVVMMGRY- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 120 rlpGPLGSLFRilDTKGMRKKAKEELTRLGISTLQDVTVpvENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESN 199
Cdd:PRK15056 107 ---GHMGWLRR--AKKRDRQIVTAALARVDMVEFRHRQI--GELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179
|
170 180 190
....*....|....*....|....*....|.
gi 1867925291 200 QVLQLVRDLRDRGLPVILISHNMPHVFDVAD 230
Cdd:PRK15056 180 RIISLLRELRDEGKTMLVSTHNLGSVTEFCD 210
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
18-242 |
2.29e-08 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 53.97 E-value: 2.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAG--KSTLIKCLTGaevPDTGelfvsgqqvhfKRPQDARVHgie 95
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAG-----------RRPWRF*TW--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 96 tVYQNLAVSPALDVASNLFLGREERLPG--PLGSLFRILD--TKGMRKKAKEELTRLGIStlQDVTVPVENLSGGQRQAV 171
Cdd:NF000106 77 -CANRRALRRTIG*HRPVR*GRRESFSGreNLYMIGR*LDlsRKDARARADELLERFSLT--EAAGRAAAKYSGGMRRRL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 172 AVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHIQRLGKCAA 242
Cdd:NF000106 154 DLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIA 224
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
18-239 |
2.62e-08 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 53.16 E-value: 2.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVgLDGVSLDLYPGEVLAIIGDNGAGKStlikcLTGAEVPDT---------GELFVSGQQVHfkrPQD 88
Cdd:PRK10418 5 IELRNIALQAAQPL-VHGVSLTLQRGRVLALVGGSGSGKS-----LTCAAALGIlpagvrqtaGRVLLDGKPVA---PCA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 89 ARVHGIETVYQN--LAVSPALDVASNlflGREERL----PGPLGSLFRILDTKGMrkkakEELTRLgistLQdvTVPVEn 162
Cdd:PRK10418 76 LRGRKIATIMQNprSAFNPLHTMHTH---ARETCLalgkPADDATLTAALEAVGL-----ENAARV----LK--LYPFE- 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 163 LSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:PRK10418 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIvQKRALGMLLVTHDMGVVARLADDVAVMSHGR 218
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
33-79 |
3.29e-08 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 54.02 E-value: 3.29e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQ 79
Cdd:COG1132 356 LKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGV 402
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
18-232 |
4.35e-08 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 52.76 E-value: 4.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRpQDARVhgietV 97
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAR-EDTRL-----M 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 98 YQNLAVSPALDVASNLFLG-----REERLpgplgslfRILDTKGMRKKAKEEltrlgistlqdvtvPVEnLSGGQRQAVA 172
Cdd:PRK11247 87 FQDARLLPWKKVIDNVGLGlkgqwRDAAL--------QALAAVGLADRANEW--------------PAA-LSGGQKQRVA 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 173 VARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:PRK11247 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSEAVAMADRV 204
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
18-220 |
4.50e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 52.11 E-value: 4.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLvkTF---GRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQdarvhgi 94
Cdd:PRK13538 2 LEARNL--ACerdERIL-FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 etVYQNL-------AVSPALDVASNL-FLGreeRLPGPLGSlFRILDTkgmrkkakeeLTRLGISTLQDvtVPVENLSGG 166
Cdd:PRK13538 72 --YHQDLlylghqpGIKTELTALENLrFYQ---RLHGPGDD-EALWEA----------LAQVGLAGFED--VPVRQLSAG 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 167 QRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISH 220
Cdd:PRK13538 134 QQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
42-234 |
4.59e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 53.66 E-value: 4.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 42 PGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGEL-----------FVSGQ--QVHFKRPQDAR---VHGIETVyqnlavsp 105
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYeeepswdevlkRFRGTelQNYFKKLYNGEikvVHKPQYV-------- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 106 alDVASNLFLGREERLpgplgslfriLDTKGMRKKAKEELTRLGISTLQDVtvPVENLSGGQRQAVAVARAAAFGSKVVV 185
Cdd:PRK13409 170 --DLIPKVFKGKVREL----------LKKVDERGKLDEVVERLGLENILDR--DISELSGGELQRVAIAAALLRDADFYF 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1867925291 186 LDEPTAALGVRESNQVLQLVRDLRdRGLPVILISHNMPhVFD-VADRIHI 234
Cdd:PRK13409 236 FDEPTSYLDIRQRLNVARLIRELA-EGKYVLVVEHDLA-VLDyLADNVHI 283
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
33-239 |
6.34e-08 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 51.84 E-value: 6.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHfKRPQDARVHGIETVYQnlavSPAL---DV 109
Cdd:cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR-DISRKSLRSMIGVVLQ----DTFLfsgTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 110 ASNLFLGREErlpgplgslfrildtkGMRKKAKEELTRLG----ISTLQD--VTVPVE---NLSGGQRQAVAVARAAAFG 180
Cdd:cd03254 94 MENIRLGRPN----------------ATDEEVIEAAKEAGahdfIMKLPNgyDTVLGEnggNLSQGERQLLAIARAMLRD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 181 SKVVVLDEPTAALGVRESNQVLQLVRDLRDrGLPVILISHNMPHVFDvADRIHIQRLGK 239
Cdd:cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKN-ADKILVLDDGK 214
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
16-247 |
9.63e-08 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 52.11 E-value: 9.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAevpDTGELFVSGQQVHFK------- 84
Cdd:PRK15093 2 PLLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV---TKDNWRVTADRMRFDdidllrl 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 85 RPQDARV---HGIETVYQNlaVSPALDVASNLflGRE--ERLPGPL--GSLFRILDTKgmRKKAKEELTRLGISTLQDV- 156
Cdd:PRK15093 79 SPRERRKlvgHNVSMIFQE--PQSCLDPSERV--GRQlmQNIPGWTykGRWWQRFGWR--KRRAIELLHRVGIKDHKDAm 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 157 -TVPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRIHI 234
Cdd:PRK15093 153 rSFPYE-LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLnQNNNTTILLISHDLQMLSQWADKINV 231
|
250
....*....|...
gi 1867925291 235 QRLGKCAATITPQ 247
Cdd:PRK15093 232 LYCGQTVETAPSK 244
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
6-74 |
1.05e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 52.48 E-value: 1.05e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 6 FEAPRTeTREPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGEL 74
Cdd:PRK10636 302 FRAPES-LPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
16-232 |
1.08e-07 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 51.83 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 16 PILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTgelFVSGQQVHFK------- 84
Cdd:COG4170 2 PLLDIRNLTIEIdtpqGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNW---HVTADRFRWNgidllkl 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 85 RPQDARV---HGIETVYQNlaVSPALDVASNLFLGREERLPGPL--GSLFRILDTKgmRKKAKEELTRLGISTLQDV--T 157
Cdd:COG4170 79 SPRERRKiigREIAMIFQE--PSSCLDPSAKIGDQLIEAIPSWTfkGKWWQRFKWR--KKRAIELLHRVGIKDHKDImnS 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 158 VPVEnLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVFDVADRI 232
Cdd:COG4170 155 YPHE-LTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLnQLQGTSILLISHDLESISQWADTI 229
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
18-113 |
1.21e-07 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 51.77 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTF-GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDarvHGIET 96
Cdd:PRK11650 4 LKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD---RDIAM 80
|
90
....*....|....*..
gi 1867925291 97 VYQNLAVSPALDVASNL 113
Cdd:PRK11650 81 VFQNYALYPHMSVRENM 97
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
42-234 |
1.60e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 50.83 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 42 PGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGEL-----------FVSGQ--QVHFKRPQDARVHGIETVyQNLavspald 108
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdwdeildEFRGSelQNYFTKLLEGDVKVIVKP-QYV------- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 109 vasnlflgreERLPGPL-GSLFRILDTKGMRKKAKEELTRLGISTLQDVTVpvENLSGGQRQAVAVARAAAFGSKVVVLD 187
Cdd:cd03236 97 ----------DLIPKAVkGKVGELLKKKDERGKLDELVDQLELRHVLDRNI--DQLSGGELQRVAIAAALARDADFYFFD 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1867925291 188 EPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPhVFD-VADRIHI 234
Cdd:cd03236 165 EPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDyLSDYIHC 211
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
33-112 |
1.79e-07 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 50.34 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFkrPQDARVhgIETVYQNLAVSPALDVASN 112
Cdd:COG2401 46 LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQF--GREASL--IDAIGRKGDFKDAVELLNA 121
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
33-240 |
1.87e-07 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 51.80 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPD--TGELFVSGqqvhfKRPQDARVHGIETVYQNLAVSPALDVA 110
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANN-----RKPTKQILKRTGFVTQDDILYPHLTVR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 111 SNLFLGREERLPGPLGSLFRILdtkgmrkKAKEELTRLGISTLQDVTVP---VENLSGGQRQAVAVARAAAFGSKVVVLD 187
Cdd:PLN03211 159 ETLVFCSLLRLPKSLTKQEKIL-------VAESVISELGLTKCENTIIGnsfIRGISGGERKRVSIAHEMLINPSLLILD 231
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 188 EPTAALGVRESNQVLQLVRDLRDRGLPVILISHN-MPHVFDVADRIHIQRLGKC 240
Cdd:PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQpSSRVYQMFDSVLVLSEGRC 285
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
18-74 |
2.95e-07 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 50.96 E-value: 2.95e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAE--VPDTGEL 74
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyEPTSGRI 59
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
28-234 |
3.13e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 50.94 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAE--VPDTGELFVSGQQVHFKRPQDARVHGIETVYQ------ 99
Cdd:NF040905 272 ERKV-VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRSygRNISGTVFKDGKEVDVSTVSDAIDAGLAYVTEdrkgyg 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 100 -NLAVspalDVASNLFLGREERLpgplgSLFRILDTKGMRKKAKEELTRLGISTlQDVTVPVENLSGGQRqavavaraaa 178
Cdd:NF040905 351 lNLID----DIKRNITLANLGKV-----SRRGVIDENEEIKVAEEYRKKMNIKT-PSVFQKVGNLSGGNQ---------- 410
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 179 fgSKVV------------VLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRIHI 234
Cdd:NF040905 411 --QKVVlskwlftdpdvlILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYV 476
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
33-234 |
3.19e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 50.98 E-value: 3.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvHGIETVYQ-----------NL 101
Cdd:PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR-QAISVVSQrvhlfsatlrdNL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 102 AVspALDVASNLFL-------GREERLPGPLGslfriLDT---KGMRKKAKEELTRLGIST--LQDvtvpvenlsggqrq 169
Cdd:PRK11160 435 LL--AAPNASDEALievlqqvGLEKLLEDDKG-----LNAwlgEGGRQLSGGEQRRLGIARalLHD-------------- 493
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 170 avavaraaafgSKVVVLDEPTAALGVRESNQVLQLVRDLRdRGLPVILISHN---MPHVfdvaDRIHI 234
Cdd:PRK11160 494 -----------APLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRltgLEQF----DRICV 545
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
11-232 |
3.78e-07 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 50.11 E-value: 3.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 11 TETREPILKARNLVKTF----GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPD---TGELFVSGQQVhF 83
Cdd:PRK09473 6 QQQADALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANgriGGSATFNGREI-L 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 84 KRPQDA----RVHGIETVYQNLAVS--PALDVASNLFlgreERLpgplgslfrILDtKGMRKK-AKEELTRLgistLQDV 156
Cdd:PRK09473 85 NLPEKElnklRAEQISMIFQDPMTSlnPYMRVGEQLM----EVL---------MLH-KGMSKAeAFEESVRM----LDAV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 157 TVP---------VENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDL-RDRGLPVILISHNMPHVF 226
Cdd:PRK09473 147 KMPearkrmkmyPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELkREFNTAIIMITHDLGVVA 226
|
....*.
gi 1867925291 227 DVADRI 232
Cdd:PRK09473 227 GICDKV 232
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
33-264 |
8.03e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 49.97 E-value: 8.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQqvhfkrpqDARVHGIETVYQNLAVSPALDVasn 112
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC--------DVAKFGLTDLRRVLSIIPQSPV--- 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGREERLPGPL-----GSLFRILDtkgmRKKAKEELTRLGISTLQDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLD 187
Cdd:PLN03232 1321 LFSGTVRFNIDPFsehndADLWEALE----RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 188 EPTAALGVRESNQVLQLVRDlRDRGLPVILISHNMPHVFDvADRIHIQRLGKCAATITPQSHTMTDAVAIM-----TGAA 262
Cdd:PLN03232 1397 EATASVDVRTDSLIQRTIRE-EFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFrmvhsTGPA 1474
|
..
gi 1867925291 263 KA 264
Cdd:PLN03232 1475 NA 1476
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
33-232 |
1.39e-06 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 47.85 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfKRPQDARVHGIETVYQNLAVSPALDVASN 112
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI--SQYEHKYLHSKVSLVGQEPVLFARSLQDN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGreerLPG-PLGSLFRILDTKGMRKKAKEelTRLGISTlqDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTA 191
Cdd:cd03248 108 IAYG----LQScSFECVKEAAQKAHAHSFISE--LASGYDT--EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATS 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1867925291 192 ALGVRESNQVLQLVRD-LRDRglPVILISHNMPHVfDVADRI 232
Cdd:cd03248 180 ALDAESEQQVQQALYDwPERR--TVLVIAHRLSTV-ERADQI 218
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
159-238 |
2.00e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 48.67 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 159 PVENLSGGQRQAVAVARAAAFGSK---VVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMpHVFDVADriHIQ 235
Cdd:PRK00635 806 PLSSLSGGEIQRLKLAYELLAPSKkptLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVVKVAD--YVL 882
|
...
gi 1867925291 236 RLG 238
Cdd:PRK00635 883 ELG 885
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
21-78 |
2.10e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 48.58 E-value: 2.10e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 21 RNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSG 78
Cdd:NF033858 5 EGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLG 62
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
9-101 |
3.65e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 47.81 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 9 PRTETR--EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfkrp 86
Cdd:NF033858 256 PRPADDddEPAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV----- 330
|
90 100 110
....*....|....*....|....*....|...
gi 1867925291 87 qDARvhGIE------------------TVYQNL 101
Cdd:NF033858 331 -DAG--DIAtrrrvgymsqafslygelTVRQNL 360
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
33-232 |
7.02e-06 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 46.87 E-value: 7.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGaEVP-DTGELFVSGQQVHFKRPQDARVHGIETVYQNLA-----VSPA 106
Cdd:PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNG-EVLlDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAegieeQAEY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 107 L--------DVASNLflgrEERLPGPLGSLFRILDTKG---MRKKAKEELTRLGIstlqDVTVPVENLSGGQRQAVAVAR 175
Cdd:PRK11147 98 LkryhdishLVETDP----SEKNLNELAKLQEQLDHHNlwqLENRINEVLAQLGL----DPDAALSSLSGGWLRKAALGR 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 176 AAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDrglPVILISHNMPHVFDVADRI 232
Cdd:PRK11147 170 ALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG---SIIFISHDRSFIRNMATRI 223
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
28-118 |
7.25e-06 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 46.88 E-value: 7.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARvHGIETVYQNlAVSPAL 107
Cdd:PRK13657 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR-RNIAVVFQD-AGLFNR 423
|
90
....*....|.
gi 1867925291 108 DVASNLFLGRE 118
Cdd:PRK13657 424 SIEDNIRVGRP 434
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
33-220 |
7.54e-06 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 45.94 E-value: 7.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEvpdtgELFVSGQQVHFK-------RPQDARVHGIETVYQNLAVSP 105
Cdd:PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE-----DYEVTGGTVEFKgkdllelSPEDRAGEGIFMAFQYPVEIP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 106 AldVASNLFLG------REERLPGPLGSL-FR--ILDTKGMRKKAKEELTRlgistlqDVTVpveNLSGGQRQAVAVARA 176
Cdd:PRK09580 92 G--VSNQFFLQtalnavRSYRGQEPLDRFdFQdlMEEKIALLKMPEDLLTR-------SVNV---GFSGGEKKRNDILQM 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1867925291 177 AAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISH 220
Cdd:PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
25-77 |
8.34e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 46.65 E-value: 8.34e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1867925291 25 KTFG--RVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVS 77
Cdd:PRK11819 14 KVVPpkKQI-LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA 67
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
33-78 |
8.38e-06 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 45.54 E-value: 8.38e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSG 78
Cdd:cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
33-264 |
9.77e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 46.65 E-value: 9.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQqvhfkrpqDARVHGIETVYQNLAVSPALDVasn 112
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGC--------DISKFGLMDLRKVLGIIPQAPV--- 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGREERLPGPLGS-----LFRILDtkgmRKKAKEELTRLGISTLQDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLD 187
Cdd:PLN03130 1324 LFSGTVRFNLDPFNEhndadLWESLE----RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 188 EPTAALGVRESNQVLQLVRDlRDRGLPVILISHNMPHVFDvADRIHIQRLGKCAATITPQSHTMTD--AVAIM---TGAA 262
Cdd:PLN03130 1400 EATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEgsAFSKMvqsTGAA 1477
|
..
gi 1867925291 263 KA 264
Cdd:PLN03130 1478 NA 1479
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
27-239 |
1.54e-05 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 45.89 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 27 FGRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfkrpQDARVHGIETVYQNLAVSPA 106
Cdd:TIGR01193 485 YGSNI-LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL-----KDIDRHTLRQFINYLPQEPY 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 107 L---DVASNLFLGREERLPgpLGSLFRILDTKGMRKKAKEelTRLGISTlqDVTVPVENLSGGQRQAVAVARAAAFGSKV 183
Cdd:TIGR01193 559 IfsgSILENLLLGAKENVS--QDEIWAACEIAEIKDDIEN--MPLGYQT--ELSEEGSSISGGQKQRIALARALLTDSKV 632
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1867925291 184 VVLDEPTAALGVRESNQVLQLVRDLRDRGLpvILISHNMpHVFDVADRIHIQRLGK 239
Cdd:TIGR01193 633 LILDESTSNLDTITEKKIVNNLLNLQDKTI--IFVAHRL-SVAKQSDKIIVLDHGK 685
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
33-233 |
1.82e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 43.89 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLtgaevpdtgELFVSGQQVHFKRPQDARVhgietvyqnlavspaldvasn 112
Cdd:cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAI---------GLALGGAQSATRRRSGVKA--------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 lflgreeRLPGPLGSLFRILDTKGMRKKAKEELT---RLGISTLQDVTVpvenlsggqrqavavaraaafgskvVVLDEP 189
Cdd:cd03227 61 -------GCIVAAVSAELIFTRLQLSGGEKELSAlalILALASLKPRPL-------------------------YILDEI 108
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1867925291 190 TAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRIH 233
Cdd:cd03227 109 DRGLDPRDGQALAEAILEHLVKGAQVIVITHL-PELAELADKLI 151
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
33-119 |
1.85e-05 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 45.31 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGElfvsgqqvhfKRPQDarvhGIETVY--QNLAVSPALDVA 110
Cdd:TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGE----------ARPQP----GIKVGYlpQEPQLDPTKTVR 86
|
....*....
gi 1867925291 111 SNLFLGREE 119
Cdd:TIGR03719 87 ENVEEGVAE 95
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
33-79 |
1.90e-05 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 45.58 E-value: 1.90e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQ 79
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQ 420
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
28-236 |
2.11e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 45.55 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGaevpdtgELFVSGQQVHFkrPQDARVHGIETVYQNLAVsPAL 107
Cdd:PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN-------EISADGGSYTF--PGNWQLAWVNQETPALPQ-PAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 108 D-----------VASNLFLGREERLPGPLGSLFRILDTKG---MRKKAKEELTRLGISTLQdVTVPVENLSGGQRQAVAV 173
Cdd:PRK10636 82 EyvidgdreyrqLEAQLHDANERNDGHAIATIHGKLDAIDawtIRSRAASLLHGLGFSNEQ-LERPVSDFSGGWRMRLNL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 174 ARAAAFGSKVVVLDEPTAALGVresNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI-HIQR 236
Cdd:PRK10636 161 AQALICRSDLLLLDEPTNHLDL---DAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIiHIEQ 221
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
180-238 |
2.24e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 45.39 E-value: 2.24e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 180 GSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMpHVFDVADriHIQRLG 238
Cdd:TIGR00630 850 GRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNL-DVIKTAD--YIIDLG 905
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
33-220 |
2.96e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 45.22 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPD--TGELFVSGqqvhFKRPQD--ARVHGIetVYQNLAVSPALD 108
Cdd:PLN03140 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGyiEGDIRISG----FPKKQEtfARISGY--CEQNDIHSPQVT 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 109 VASNLFLGREERLPGPLGSlfrilDTKGMRKKAKEELTRLgiSTLQDVTVP---VENLSGGQRQAVAVARAAAFGSKVVV 185
Cdd:PLN03140 970 VRESLIYSAFLRLPKEVSK-----EEKMMFVDEVMELVEL--DNLKDAIVGlpgVTGLSTEQRKRLTIAVELVANPSIIF 1042
|
170 180 190
....*....|....*....|....*....|....*
gi 1867925291 186 LDEPTAALGVRESNQVLQLVRDLRDRGLPVILISH 220
Cdd:PLN03140 1043 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
23-115 |
3.03e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 43.33 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 23 LVKTFGrVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKrPQDARVHGIEtvYQNLA 102
Cdd:cd03222 6 CVKRYG-VFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYK-PQYIDLSGGE--LQRVA 81
|
90
....*....|...
gi 1867925291 103 VSPALDVASNLFL 115
Cdd:cd03222 82 IAAALLRNATFYL 94
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
33-232 |
3.73e-05 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 43.64 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHgIETVYQNlavsPAL---DV 109
Cdd:cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR-ISIIPQD----PVLfsgTI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 110 ASNLflgreerlpGPLGS-----LFRILDTKGMRKKAKEELTRLGIstlqDVTVPVENLSGGQRQAVAVARAAAFGSKVV 184
Cdd:cd03244 95 RSNL---------DPFGEysdeeLWQALERVGLKEFVESLPGGLDT----VVEEGGENLSVGQRQLLCLARALLRKSKIL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1867925291 185 VLDEPTAALGVRESNQVLQLVRD-LRDRglPVILISHNMPHVFDvADRI 232
Cdd:cd03244 162 VLDEATASVDPETDALIQKTIREaFKDC--TVLTIAHRLDTIID-SDRI 207
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
12-251 |
4.19e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 44.71 E-value: 4.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 12 ETREPILKARNL-----VKTFGRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLtgAEVPDTG-----ELFVSGQ-- 79
Cdd:TIGR00956 754 ESGEDIFHWRNLtyevkIKKEKRVI-LNNVDGWVKPGTLTALMGASGAGKTTLLNVL--AERVTTGvitggDRLVNGRpl 830
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 80 QVHFKRP----QDARVH-GIETVYQNLAVSPALdvasnlflgreeRLPgplgslfrildtKGMRKKAK----EELTR-LG 149
Cdd:TIGR00956 831 DSSFQRSigyvQQQDLHlPTSTVRESLRFSAYL------------RQP------------KSVSKSEKmeyvEEVIKlLE 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 150 ISTLQD--VTVPVENLSGGQRQAVAVARAAAFGSKVVV-LDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPH-- 224
Cdd:TIGR00956 887 MESYADavVGVPGEGLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQ-PSai 965
|
250 260 270
....*....|....*....|....*....|
gi 1867925291 225 VFDVADR-IHIQRLGKC--AATITPQSHTM 251
Cdd:TIGR00956 966 LFEEFDRlLLLQKGGQTvyFGDLGENSHTI 995
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
18-239 |
4.23e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 43.68 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 18 LKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLT-----GAEVPDTGELFVSGQQVHFKRPQDARVH 92
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNrllelNEEARVEGEVRLFGRNIYSPDVDPIEVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 93 -GIETVYQNLAVSPALDVASNLFLG-REERLPGPLGSLFRILDTkGMRKKAKEELTRlgiSTLQDVTvpvENLSGGQRQA 170
Cdd:PRK14267 85 rEVGMVFQYPNPFPHLTIYDNVAIGvKLNGLVKSKKELDERVEW-ALKKAALWDEVK---DRLNDYP---SNLSGGQRQR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1867925291 171 VAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDRgLPVILISHNMPHVFDVADRIHIQRLGK 239
Cdd:PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGK 225
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
33-120 |
5.01e-05 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 43.30 E-value: 5.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVHFKRPQDARVHgIETVYQNlavsPAL---DV 109
Cdd:cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ-IGLVSQE----PVLfdgTI 93
|
90
....*....|.
gi 1867925291 110 ASNLFLGREER 120
Cdd:cd03249 94 AENIRYGKPDA 104
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
25-232 |
1.05e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 42.50 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 25 KTFgrvVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELfvsgqqvhfKRPQDARVhgietvyqnLAVS 104
Cdd:PRK13546 35 KTF---FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV---------DRNGEVSV---------IAIS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 105 PALDvasnlflgreERLPGPLGSLFRILDTKGMRKKAKE------ELTRLGISTLQdvtvPVENLSGGQRQAVAVARAAA 178
Cdd:PRK13546 94 AGLS----------GQLTGIENIEFKMLCMGFKRKEIKAmtpkiiEFSELGEFIYQ----PVKKYSSGMRAKLGFSINIT 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1867925291 179 FGSKVVVLDEptaALGVRE---SNQVLQLVRDLRDRGLPVILISHNMPHVFDVADRI 232
Cdd:PRK13546 160 VNPDILVIDE---ALSVGDqtfAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKI 213
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
34-83 |
1.14e-04 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 39.12 E-value: 1.14e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1867925291 34 DGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGaevpdtgeLFVSGQQVHF 83
Cdd:pfam13555 13 DGHTIPIDPRGNTLLTGPSGSGKSTLLDAIQT--------LLVPAKRARF 54
|
|
| PRK01889 |
PRK01889 |
GTPase RsgA; Reviewed |
30-138 |
1.24e-04 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234988 [Multi-domain] Cd Length: 356 Bit Score: 42.61 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 30 VVGLDGVSLD-----LYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELfvsgqqvhfkRPQDAR-VHgiETVYQNLav 103
Cdd:PRK01889 177 VSALDGEGLDvlaawLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV----------REDDSKgRH--TTTHREL-- 242
|
90 100 110
....*....|....*....|....*....|....*
gi 1867925291 104 spaldvasnlflgreerLPGPLGSLfrILDTKGMR 138
Cdd:PRK01889 243 -----------------HPLPSGGL--LIDTPGMR 258
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
33-240 |
1.32e-04 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 41.85 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPD--TGELFVSGQQvhfKRPQDARVHGIetVYQNLAVSPALDVa 110
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGRP---LDKNFQRSTGY--VEQQDVHSPNLTV- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 111 snlflgREerlpgplgslfrildtkGMRKKAKeeLTRLGISTLQDVTVPVEnlsggqrqavavaraaaFGSK--VVVLDE 188
Cdd:cd03232 97 ------RE-----------------ALRFSAL--LRGLSVEQRKRLTIGVE-----------------LAAKpsILFLDE 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 189 PTAALGVRESNQVLQLVRDLRDRGLPVIL-ISHNMPHVFDVADRIHI-QRLGKC 240
Cdd:cd03232 135 PTSGLDSQAAYNIVRFLKKLADSGQAILCtIHQPSASIFEKFDRLLLlKRGGKT 188
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
33-66 |
1.47e-04 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 41.71 E-value: 1.47e-04
10 20 30
....*....|....*....|....*....|....
gi 1867925291 33 LDGVSLDLYPGEVLaIIGDNGAGKSTLIKCLTGA 66
Cdd:pfam13476 9 FRDQTIDFSKGLTL-ITGPNGSGKTTILDAIKLA 41
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
33-81 |
1.71e-04 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 41.83 E-value: 1.71e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV 81
Cdd:cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV 66
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
15-65 |
1.94e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 42.31 E-value: 1.94e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1867925291 15 EPILKARNLVKTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTG 65
Cdd:PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
28-241 |
2.26e-04 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 42.10 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGaevpdtgeLFVSGQ-QVHfkRPQDARVhgietvyqnlavspa 106
Cdd:COG4178 375 GRPL-LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAG--------LWPYGSgRIA--RPAGARV--------------- 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 107 ldvasnLFLGREERLpgPLGSLFRIL-----DTKGMRKKAKEELTRLGISTLQ---DVTVPVEN-LSGGqrqavavaraa 177
Cdd:COG4178 429 ------LFLPQRPYL--PLGTLREALlypatAEAFSDAELREALEAVGLGHLAerlDEEADWDQvLSLGeqqrlafarll 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1867925291 178 afgsKVVVLDEPTAALGVRESNQVLQLVRDLrdrgLP---VILISHNmPHVFDVADR-IHIQRLGKCA 241
Cdd:COG4178 501 lhkpDWLFLDEATSALDEENEAALYQLLREE----LPgttVISVGHR-STLAAFHDRvLELTGDGSWQ 563
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
183-232 |
2.57e-04 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 40.77 E-value: 2.57e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1867925291 183 VVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRI 232
Cdd:cd03238 110 LFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN-LDVLSSADWI 158
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
33-81 |
2.67e-04 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.67e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQV 81
Cdd:cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI 65
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-220 |
2.77e-04 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 41.75 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 4 TEFEAPRTETRE-----PI-LKARNLVktfgrVVGLDG------VSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAeVPDT 71
Cdd:PRK11174 330 TPLAHPQQGEKElasndPVtIEAEDLE-----ILSPDGktlagpLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQ 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 72 GELFVSGQQVHFKRPQDARVHgIETVYQNlavsPALDVAS---NLFLGR----EERLPGPLgslfrildtkgMRKKAKEE 144
Cdd:PRK11174 404 GSLKINGIELRELDPESWRKH-LSWVGQN----PQLPHGTlrdNVLLGNpdasDEQLQQAL-----------ENAWVSEF 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 145 LTRL--GISTlqdvtvPVEN----LSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRdRGLPVILI 218
Cdd:PRK11174 468 LPLLpqGLDT------PIGDqaagLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMV 540
|
..
gi 1867925291 219 SH 220
Cdd:PRK11174 541 TH 542
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
33-78 |
4.06e-04 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 41.41 E-value: 4.06e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSG 78
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
135-232 |
4.59e-04 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 40.88 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 135 KGMRKKAKEELTRLGISTLQD-VTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAALGVRESNQVLQLVRDLRDR-G 212
Cdd:PRK11022 125 KTRRQRAIDLLNQVGIPDPASrLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKeN 204
|
90 100
....*....|....*....|
gi 1867925291 213 LPVILISHNMPHVFDVADRI 232
Cdd:PRK11022 205 MALVLITHDLALVAEAAHKI 224
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
180-232 |
4.87e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 40.68 E-value: 4.87e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 180 GSKVVVLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNMpHVFDVADRI 232
Cdd:cd03271 190 GKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL-DVIKCADWI 241
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
42-90 |
5.55e-04 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 40.22 E-value: 5.55e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1867925291 42 PGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQqvHFKRPQDAR 90
Cdd:PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK--TATRGDRSR 82
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
185-232 |
6.40e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 40.97 E-value: 6.40e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1867925291 185 VLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRI 232
Cdd:PRK00635 501 ILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD-EQMISLADRI 547
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
33-246 |
8.10e-04 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 39.70 E-value: 8.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQqvhfkrpqDARVHGIETVYQNLAVSPALDVasn 112
Cdd:cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGI--------DISTIPLEDLRSSLTIIPQDPT--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGreerlpgplgSLFRILDTKGMRKKAKeeltrlgISTLQDVTVPVENLSGGQRQAVAVARAAAFGSKVVVLDEPTAA 192
Cdd:cd03369 93 LFSG----------TIRSNLDPFDEYSDEE-------IYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 193 LGVRESNQVLQLVRDLRdRGLPVILISHNMPHVFDVaDRIHIQRLGKCAATITP 246
Cdd:cd03369 156 IDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDHP 207
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
42-236 |
1.34e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 38.12 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 42 PGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVsgqqvhfkrpqdarvhgietvyqnlaVSPALDVASNLFLGREERL 121
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY--------------------------IDGEDILEEVLDQLLLIIV 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 122 PGPLGSLFRILDTKGMRKKAKEeltrlgistlqdvtvpvenlsggqrqavavaraaaFGSKVVVLDEPTAALGVRESNQV 201
Cdd:smart00382 55 GGKKASGSGELRLRLALALARK-----------------------------------LKPDVLILDEITSLLDAEQEALL 99
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1867925291 202 LQLVRD------LRDRGLPVILISHNMPHVFDVADRIHIQR 236
Cdd:smart00382 100 LLLEELrlllllKSEKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
21-74 |
1.45e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 39.55 E-value: 1.45e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 21 RNLVKTFgrvvgldgvSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGEL 74
Cdd:PRK11147 332 KQLVKDF---------SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
17-66 |
2.08e-03 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 38.40 E-value: 2.08e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 17 ILKARNLVKTFGRVVG----LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGA 66
Cdd:cd03233 3 TLSWRNISFTTGKGRSkipiLKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
33-238 |
2.80e-03 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 39.16 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQQVhfkrpqdARVhGIETVYQNLAVSPALDVasn 112
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI-------AKI-GLHDLRFKITIIPQDPV--- 1370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 113 LFLGreerlpgplgSLFRILDTKGmrKKAKEEL-TRLGISTLQDVTVPV------------ENLSGGQRQAVAVARAAAF 179
Cdd:TIGR00957 1371 LFSG----------SLRMNLDPFS--QYSDEEVwWALELAHLKTFVSALpdkldhecaeggENLSVGQRQLVCLARALLR 1438
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1867925291 180 GSKVVVLDEPTAALGVRESNQVLQLVRDLRDrGLPVILISHNMPHVFD-----VADRIHIQRLG 238
Cdd:TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFE-DCTVLTIAHRLNTIMDytrviVLDKGEVAEFG 1501
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
28-220 |
3.01e-03 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 37.52 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLtgaevpdtGELFVSGQ-QVHfkRPQDARVhgietvyqnlavspa 106
Cdd:cd03223 13 GRVL-LKDLSFEIKPGDRLLITGPSGTGKSSLFRAL--------AGLWPWGSgRIG--MPEGEDL--------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 107 ldvasnLFLGREERLPgpLGSLfrildtkgmrkkaKEELtrlgISTLQDVtvpvenLSGGQRQAVAVARAAAFGSKVVVL 186
Cdd:cd03223 67 ------LFLPQRPYLP--LGTL-------------REQL----IYPWDDV------LSGGEQQRLAFARLLLHKPKFVFL 115
|
170 180 190
....*....|....*....|....*....|....
gi 1867925291 187 DEPTAALGVRESNQVLQLvrdLRDRGLPVILISH 220
Cdd:cd03223 116 DEATSALDEESEDRLYQL---LKELGITVISVGH 146
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
33-79 |
3.19e-03 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 38.74 E-value: 3.19e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQ 79
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR 488
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
36-243 |
3.20e-03 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 38.32 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 36 VSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGE-------LFVSGQQVHFkrPQDARvhGIETVYQNLAVSPALD 108
Cdd:PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRivlngrvLFDAEKGICL--PPEKR--RIGYVFQDARLFPHYK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 109 VASNLflgreerlpgplgslfrildTKGMRKKAKEELTR----LGISTLQDvTVPVeNLSGGQRQAVAVARAAAFGSKVV 184
Cdd:PRK11144 93 VRGNL--------------------RYGMAKSMVAQFDKivalLGIEPLLD-RYPG-SLSGGEKQRVAIGRALLTAPELL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 185 VLDEPTAALGV---RESNQVLQ-LVRDLRdrgLPVILISHNMPHVFDVADRIHIQRLGKCAAT 243
Cdd:PRK11144 151 LMDEPLASLDLprkRELLPYLErLAREIN---IPILYVSHSLDEILRLADRVVVLEQGKVKAF 210
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
28-232 |
3.88e-03 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 38.55 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 28 GRVVgLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGqqvhfkRPQDARVH-----GIETVYQNLA 102
Cdd:PRK10790 353 DNLV-LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG------RPLSSLSHsvlrqGVAMVQQDPV 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 103 VSpALDVASNLFLGR---EERLpgplgslFRILDTKGMRKKAK---EEL-TRLGISTlqdvtvpvENLSGGQRQAVAVAR 175
Cdd:PRK10790 426 VL-ADTFLANVTLGRdisEEQV-------WQALETVQLAELARslpDGLyTPLGEQG--------NNLSVGQKQLLALAR 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 176 AAAFGSKVVVLDEPTAAL--GVRES-NQVLQLVRDlrdrGLPVILISHNMPHVFDvADRI 232
Cdd:PRK10790 490 VLVQTPQILILDEATANIdsGTEQAiQQALAAVRE----HTTLVVIAHRLSTIVE-ADTI 544
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
32-63 |
4.11e-03 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 37.67 E-value: 4.11e-03
10 20 30
....*....|....*....|....*....|...
gi 1867925291 32 GLDGVSLDL-YPGEVLAIIGDNGAGKSTLIKCL 63
Cdd:COG3950 13 GFEDLEIDFdNPPRLTVLVGENGSGKTTLLEAI 45
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
45-63 |
7.46e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 36.98 E-value: 7.46e-03
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
29-232 |
7.88e-03 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 36.85 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 29 RVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLikcltgaeVPDTgeLFVSGQQ--------------VHFKRPQDARVHGI 94
Cdd:cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSL--------AFDT--IYAEGQRryveslsayarqflGQMDKPDVDSIEGL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1867925291 95 etvyqnlavSPALDVASNlFLGREERlpGPLGSLFRILDTKGMRkkakeeLTRLGIST----LQDVTVP-------VENL 163
Cdd:cd03270 77 ---------SPAIAIDQK-TTSRNPR--STVGTVTEIYDYLRLL------FARVGIRErlgfLVDVGLGyltlsrsAPTL 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1867925291 164 SGGQRQAVAVARAaaFGSKVV----VLDEPTAALGVRESNQVLQLVRDLRDRGLPVILISHNmPHVFDVADRI 232
Cdd:cd03270 139 SGGEAQRIRLATQ--IGSGLTgvlyVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD-EDTIRAADHV 208
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
33-79 |
8.56e-03 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 36.76 E-value: 8.56e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1867925291 33 LDGVSLDLYPGEVLAIIGDNGAGKSTLIKCLTGAEVPDTGELFVSGQ 79
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR 99
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
25-63 |
9.42e-03 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 36.95 E-value: 9.42e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1867925291 25 KTFGRVVGLDGVSLDLYPGEVLAIIGDNGAGKSTLIKCL 63
Cdd:COG1106 11 RSFKDELTLSMVASGLRLLRVNLIYGANASGKSNLLEAL 49
|
|
| |
