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Conserved domains on  [gi|1863685339|ref|WP_176673331|]
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putative minor capsid protein [Enterococcus avium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Minor_capsid_1 super family cl11269
Minor capsid protein; This is a putative tail-knob or minor capsid protein from bacteriophages.
 7-111 1.05e-34

Minor capsid protein; This is a putative tail-knob or minor capsid protein from bacteriophages.


The actual alignment was detected with superfamily member pfam10665:

Pssm-ID: 431423  Cd Length: 104  Bit Score: 115.24  E-value: 1.05e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863685339   7 PKEFLVDSFIYREYLGEGDWNKPKYGEEKNISFCRIDRGSQYTFSTNGKQLLYNAVIFCYAGLTDPMLDFKAQSLVIYDG 86
Cdd:pfam10665   1 PKEILIHSVNYKPYKEEGDWGGDVYAKPILIENVRIDKTVQKAGTDHSRQKLKKGVLFIDPKYSSPFIERSVKGVVVYDG 80

                          90       100
                  ....*....|....*....|....*
gi 1863685339  87 TEHTVTKVDRITEaYTDDLYSYELE 111
Cdd:pfam10665  81 TEYIITSVIPIYG-RSDTLHHYEVE 104
 
Name Accession Description Interval E-value
Minor_capsid_1 pfam10665
Minor capsid protein; This is a putative tail-knob or minor capsid protein from bacteriophages.
 7-111 1.05e-34

Minor capsid protein; This is a putative tail-knob or minor capsid protein from bacteriophages.


Pssm-ID: 431423  Cd Length: 104  Bit Score: 115.24  E-value: 1.05e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863685339   7 PKEFLVDSFIYREYLGEGDWNKPKYGEEKNISFCRIDRGSQYTFSTNGKQLLYNAVIFCYAGLTDPMLDFKAQSLVIYDG 86
Cdd:pfam10665   1 PKEILIHSVNYKPYKEEGDWGGDVYAKPILIENVRIDKTVQKAGTDHSRQKLKKGVLFIDPKYSSPFIERSVKGVVVYDG 80

                          90       100
                  ....*....|....*....|....*
gi 1863685339  87 TEHTVTKVDRITEaYTDDLYSYELE 111
Cdd:pfam10665  81 TEYIITSVIPIYG-RSDTLHHYEVE 104
 
Name Accession Description Interval E-value
Minor_capsid_1 pfam10665
Minor capsid protein; This is a putative tail-knob or minor capsid protein from bacteriophages.
 7-111 1.05e-34

Minor capsid protein; This is a putative tail-knob or minor capsid protein from bacteriophages.


Pssm-ID: 431423  Cd Length: 104  Bit Score: 115.24  E-value: 1.05e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863685339   7 PKEFLVDSFIYREYLGEGDWNKPKYGEEKNISFCRIDRGSQYTFSTNGKQLLYNAVIFCYAGLTDPMLDFKAQSLVIYDG 86
Cdd:pfam10665   1 PKEILIHSVNYKPYKEEGDWGGDVYAKPILIENVRIDKTVQKAGTDHSRQKLKKGVLFIDPKYSSPFIERSVKGVVVYDG 80

                          90       100
                  ....*....|....*....|....*
gi 1863685339  87 TEHTVTKVDRITEaYTDDLYSYELE 111
Cdd:pfam10665  81 TEYIITSVIPIYG-RSDTLHHYEVE 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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