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Conserved domains on  [gi|1852000484|ref|WP_173690742|]
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MULTISPECIES: hypothetical protein [Coprococcus]

Protein Classification

lysylphosphatidylglycerol synthase transmembrane domain-containing protein( domain architecture ID 2809)

lysylphosphatidylglycerol synthase transmembrane domain-containing protein similar to Escherichia coli inner membrane protein YbhN contains the seven TM-segment transmembrane domain of bacterial phosphatidylglycerol lysyltransferases, whose function is to add lysyl groups to membrane lipids

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TIGR00374 super family cl04219
conserved hypothetical protein; This model is built on a superfamily of proteins in the ...
 25-106 4.63e-03

conserved hypothetical protein; This model is built on a superfamily of proteins in the Archaea and in Aquifex aeolicus. The authenticity of homology can be seen in the presence of motifs in the alignment that include residues relatively rare among these sequences, even though the alignment includes long regions of low-complexity hydrophobic sequences. One apparent fusion protein contains a Glycos_transf_2 region in the N-terminal half of the protein and a region homologous to this superfamily in the C-terminal region. [Unknown function, General]


The actual alignment was detected with superfamily member TIGR00374:

Pssm-ID: 470976  Cd Length: 319  Bit Score: 39.29  E-value: 4.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852000484  25 IKGAWRRNFASL--GKFKNNITMSRISGD-----------------GRTTRLFKLVLNMLAMLSVLIFGSIITAVVSVIN 85
Cdd:TIGR00374  59 IKYSFRHLFMLLfvGMFINNITPSAAGGEpmraymlkkkegisaslGFSTVLAERVFDLVIFILLLPLSAIMVFVLSIPK 138

                          90       100
                  ....*....|....*....|.
gi 1852000484  86 IAVVFIVMAVIYLGFSIIWLV 106
Cdd:TIGR00374 139 LFIYLILILITLLLFLIILYI 159
 
Name Accession Description Interval E-value
TIGR00374 TIGR00374
conserved hypothetical protein; This model is built on a superfamily of proteins in the ...
 25-106 4.63e-03

conserved hypothetical protein; This model is built on a superfamily of proteins in the Archaea and in Aquifex aeolicus. The authenticity of homology can be seen in the presence of motifs in the alignment that include residues relatively rare among these sequences, even though the alignment includes long regions of low-complexity hydrophobic sequences. One apparent fusion protein contains a Glycos_transf_2 region in the N-terminal half of the protein and a region homologous to this superfamily in the C-terminal region. [Unknown function, General]


Pssm-ID: 129470  Cd Length: 319  Bit Score: 39.29  E-value: 4.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852000484  25 IKGAWRRNFASL--GKFKNNITMSRISGD-----------------GRTTRLFKLVLNMLAMLSVLIFGSIITAVVSVIN 85
Cdd:TIGR00374  59 IKYSFRHLFMLLfvGMFINNITPSAAGGEpmraymlkkkegisaslGFSTVLAERVFDLVIFILLLPLSAIMVFVLSIPK 138

                          90       100
                  ....*....|....*....|.
gi 1852000484  86 IAVVFIVMAVIYLGFSIIWLV 106
Cdd:TIGR00374 139 LFIYLILILITLLLFLIILYI 159
 
Name Accession Description Interval E-value
TIGR00374 TIGR00374
conserved hypothetical protein; This model is built on a superfamily of proteins in the ...
 25-106 4.63e-03

conserved hypothetical protein; This model is built on a superfamily of proteins in the Archaea and in Aquifex aeolicus. The authenticity of homology can be seen in the presence of motifs in the alignment that include residues relatively rare among these sequences, even though the alignment includes long regions of low-complexity hydrophobic sequences. One apparent fusion protein contains a Glycos_transf_2 region in the N-terminal half of the protein and a region homologous to this superfamily in the C-terminal region. [Unknown function, General]


Pssm-ID: 129470  Cd Length: 319  Bit Score: 39.29  E-value: 4.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1852000484  25 IKGAWRRNFASL--GKFKNNITMSRISGD-----------------GRTTRLFKLVLNMLAMLSVLIFGSIITAVVSVIN 85
Cdd:TIGR00374  59 IKYSFRHLFMLLfvGMFINNITPSAAGGEpmraymlkkkegisaslGFSTVLAERVFDLVIFILLLPLSAIMVFVLSIPK 138

                          90       100
                  ....*....|....*....|.
gi 1852000484  86 IAVVFIVMAVIYLGFSIIWLV 106
Cdd:TIGR00374 139 LFIYLILILITLLLFLIILYI 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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