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Conserved domains on  [gi|1848400190|ref|WP_172687026|]
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MULTISPECIES: DotU family type VI secretion system protein [Enterobacteriaceae]

Protein Classification

DotU family type VI secretion system protein( domain architecture ID 11482536)

DotU family type VI secretion system protein similar to Enterobacter cloacae type VI secretion system protein ImpK

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK07033 PRK07033
DotU family type VI secretion system protein;
14-400 0e+00

DotU family type VI secretion system protein;


:

Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 686.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  14 SGANSHNPLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPW 93
Cdd:PRK07033   41 GAASGLNPLVAAANPLLNLIPQIRSTVHHPDPASLREQLLDEIRQFEERAQQAGVPYEVIIGARYCLCTALDEAAALTPW 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  94 GGGGVWPGSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIR 173
Cdd:PRK07033  121 GGSGVWSSHSLLVTFHNETWGGEKFFQLLARLSQNPRQHLDLLELLYFCLALGFEGRYRVLDNGRSQLEALRQRLAQMIR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 174 SVRGSYAPPLSVHRKDHPVTRKLWCPVVPLWACTAVVGFLACLLYILLNWRLGYYTSPVLASVYQTALPEVTIHDPAPAP 253
Cdd:PRK07033  201 SVRGEYAPALSPHWRDVPVARVLLRPTVPLWVCVALALLLALLLFIGLRWRLADRSDPVFAAIYALRLPVVQIARPAPQP 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 254 PTALDLKTFLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRS 333
Cdd:PRK07033  281 PPAPRLAKFLEPEIRAGLVAVRDEADRSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSDNVPIRT 360

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1848400190 334 ARFSSNYELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLLVAPGN 400
Cdd:PRK07033  361 ARFPSNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLLVAPGS 427
 
Name Accession Description Interval E-value
PRK07033 PRK07033
DotU family type VI secretion system protein;
14-400 0e+00

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 686.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  14 SGANSHNPLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPW 93
Cdd:PRK07033   41 GAASGLNPLVAAANPLLNLIPQIRSTVHHPDPASLREQLLDEIRQFEERAQQAGVPYEVIIGARYCLCTALDEAAALTPW 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  94 GGGGVWPGSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIR 173
Cdd:PRK07033  121 GGSGVWSSHSLLVTFHNETWGGEKFFQLLARLSQNPRQHLDLLELLYFCLALGFEGRYRVLDNGRSQLEALRQRLAQMIR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 174 SVRGSYAPPLSVHRKDHPVTRKLWCPVVPLWACTAVVGFLACLLYILLNWRLGYYTSPVLASVYQTALPEVTIHDPAPAP 253
Cdd:PRK07033  201 SVRGEYAPALSPHWRDVPVARVLLRPTVPLWVCVALALLLALLLFIGLRWRLADRSDPVFAAIYALRLPVVQIARPAPQP 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 254 PTALDLKTFLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRS 333
Cdd:PRK07033  281 PPAPRLAKFLEPEIRAGLVAVRDEADRSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSDNVPIRT 360

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1848400190 334 ARFSSNYELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLLVAPGN 400
Cdd:PRK07033  361 ARFPSNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLLVAPGS 427
DotU COG3455
Type VI protein secretion system component TssL/VasF/DotU [Intracellular trafficking, ...
 16-238 8.44e-86

Type VI protein secretion system component TssL/VasF/DotU [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442678 [Multi-domain]  Cd Length: 233  Bit Score: 261.06  E-value: 8.44e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  16 ANSHNPLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGG 95
Cdd:COG3455    10 GAGLNPLVDAASPLLLLVVRLRQGAEPPDPAALRQRLVEEIRRFERRLRAAGYSPEDIEAARYALCALLDEAVLNTPWGG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  96 GGVWPGSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDnGRSQLETIKQRLLQMIRSV 175
Cdd:COG3455    90 RSEWSRHPLQSTFFNETWGGEKFFELLERLLQEPAAHLDLLELYYLCLLLGFEGRYRVEG-GREELEALRRRLYQLIRRL 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1848400190 176 RGSYAPPLSVHRKDHPVTRKLWCPVVPLWACTAVVGFLACLLYILLNWRLGYYTSPVLASVYQ 238
Cdd:COG3455   169 RGEPPAPLSPHWQGPDAARKRLRRRLPLWVLAAVAALVLLLLYLGLSYRLNSQTDPVLAQLNQ 231
DotU pfam09850
Type VI secretion system protein DotU; DotU is a family of Gram-negative bacterial proteins ...
 21-224 3.01e-75

Type VI secretion system protein DotU; DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.


Pssm-ID: 430877 [Multi-domain]  Cd Length: 205  Bit Score: 232.96  E-value: 3.01e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  21 PLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGGGGVWP 100
Cdd:pfam09850   1 PLLDAASPLLLLVARLRQGARHPDAAALRERLVAELRAFEQEARAAGYSAEDIEAARYALCAFLDEAVLNTPWGGRSEWA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 101 GSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIRSVRGSYA 180
Cdd:pfam09850  81 RRPLQSRFFGETWGGEKFFDRLDRLLEDPAENLDLLELYYLCLSLGFEGRYRVEPDGEAELEALRQRLYQQIRRLRGEAP 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1848400190 181 PPLSVH-RKDHPVTRKLWCPVVPLWACTAVVGFLACLLYILLNWR 224
Cdd:pfam09850 161 AALSPHwQPGVAAARRPLRRRVPLWVIAALAALLLLLLYLGLSYR 205
IV_VI_DotU TIGR03349
type IV / VI secretion system protein, DotU family; At least two families of proteins, often ...
 32-214 2.18e-57

type IV / VI secretion system protein, DotU family; At least two families of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (TIGR03348). The other is the family described by this model. Members include DotU from the Legionella pneumophila type IV secretion system. Many of the members of this protein family from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274532 [Multi-domain]  Cd Length: 183  Bit Score: 186.32  E-value: 2.18e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  32 AIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGGGGVWPGSGLLVTFHNE 111
Cdd:TIGR03349   1 LVTQLRATPAPPDVEALREQLVEELRLFERRLRAAGYSSEDIEAARYALCALLDEAVLNTPWGGRSVWSRQPLLSRFHNE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 112 TWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIRSVRGSYAPPLS-----VH 186
Cdd:TIGR03349  81 TWGGEKFFERLERLLADPAEHLDLLELYYLCLSLGFEGKYRVEEDGREQLEALRDRLYRLLRGARGPVPPALSphwqgPA 160

                         170       180
                  ....*....|....*....|....*...
gi 1848400190 187 RKDHPVTRKlwcpvVPLWACTAVVGFLA 214
Cdd:TIGR03349 161 AARRRLRRY-----VPLWVILALAALVL 183
IcmH_DotU_IVB NF038228
type IVB secretion system protein IcmH/DotU;
20-233 1.79e-39

type IVB secretion system protein IcmH/DotU;


Pssm-ID: 439529 [Multi-domain]  Cd Length: 258  Bit Score: 141.85  E-value: 1.79e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  20 NPLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGGGGVW 99
Cdd:NF038228   39 NPLVAAAGPLLSLLERLRVSPSLPNVPGIRENIEHELKAFHSKLRSLGYPEELIAIARYLLCATIDELLGKSYLRLYGEE 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 100 PG-SGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIRSVRGS 178
Cdd:NF038228  119 SEfKAFTPLSHDETGPGERFFDILNRIKERPNQYLDLLELAYYCLILGFEGEYHEKADGRQVLDNLIEDLYQLIRQYRVN 198

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1848400190 179 YAPPLSvHRKDHPVTRKLwcPVVPLWACTAVVGFLACLLYILLNWRLGYYTSPVL 233
Cdd:NF038228  199 KSHRLF-KEQPNPKNTKK--NYKPLWAVTIVAVGLLILTYLVSHVLLENKAKTVQ 250
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 290-394 1.29e-29

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 110.72  E-value: 1.29e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 290 LFSSAGTSVSDGYASVLNRIAAAMNKVSG-RLLVVGYSDNVpirsARFSSNYELSLARAQSVTEQLQKHLSQPQRVKAEG 368
Cdd:cd07185     5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100
                  ....*....|....*....|....*.
gi 1848400190 369 RGDSNPIAPNNSAANRARNRRVEITL 394
Cdd:cd07185    81 YGESRPIASNDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
PRK07033 PRK07033
DotU family type VI secretion system protein;
14-400 0e+00

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 686.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  14 SGANSHNPLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPW 93
Cdd:PRK07033   41 GAASGLNPLVAAANPLLNLIPQIRSTVHHPDPASLREQLLDEIRQFEERAQQAGVPYEVIIGARYCLCTALDEAAALTPW 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  94 GGGGVWPGSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIR 173
Cdd:PRK07033  121 GGSGVWSSHSLLVTFHNETWGGEKFFQLLARLSQNPRQHLDLLELLYFCLALGFEGRYRVLDNGRSQLEALRQRLAQMIR 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 174 SVRGSYAPPLSVHRKDHPVTRKLWCPVVPLWACTAVVGFLACLLYILLNWRLGYYTSPVLASVYQTALPEVTIHDPAPAP 253
Cdd:PRK07033  201 SVRGEYAPALSPHWRDVPVARVLLRPTVPLWVCVALALLLALLLFIGLRWRLADRSDPVFAAIYALRLPVVQIARPAPQP 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 254 PTALDLKTFLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRS 333
Cdd:PRK07033  281 PPAPRLAKFLEPEIRAGLVAVRDEADRSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSDNVPIRT 360

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1848400190 334 ARFSSNYELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLLVAPGN 400
Cdd:PRK07033  361 ARFPSNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLLVAPGS 427
PRK08126 PRK08126
hypothetical protein; Provisional
 20-393 6.75e-109

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 327.04  E-value: 6.75e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  20 NPLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGGGGVW 99
Cdd:PRK08126   62 NPLLEAARPLLRALADMPATLDSAAVEQLRTLLVREVRLFQKLCEQANLRRDHMLGVRYCLCTALDEAANRTTWGRGGVW 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 100 PGSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIRSVRGSY 179
Cdd:PRK08126  142 ASRGLLTTFHGERDGGEKVFLLIGRLATDPQEHVDLLEVIYRILSLGFEGRYSVEADGRRKLEQIRQRLYTEITGRRDPV 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 180 APPLSVHRKDHPVTRKLWCPVVPLWAcTAvvgflACLLYILLNwRLGYYTSPVLAsvyQTALPEVTI----HDPAPAPPT 255
Cdd:PRK08126  222 PPALSPHWQGAEPGRLRSFRDVPVWA-TA-----AVLSLILLG-LFGWYKYRLLT---RSADVQQRIaaigRMTPPPAPH 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 256 ALDLKTFLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRSAR 335
Cdd:PRK08126  292 RLRLKILLKNEIARGTLSVDEDARHSSVVFRGDAMFVPGQATVNPAMGPLIAKIAREIARVGGKVTVTGHTDNQPIRSAQ 371

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1848400190 336 FSSNYELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEIT 393
Cdd:PRK08126  372 FASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEIT 429
DotU COG3455
Type VI protein secretion system component TssL/VasF/DotU [Intracellular trafficking, ...
 16-238 8.44e-86

Type VI protein secretion system component TssL/VasF/DotU [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442678 [Multi-domain]  Cd Length: 233  Bit Score: 261.06  E-value: 8.44e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  16 ANSHNPLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGG 95
Cdd:COG3455    10 GAGLNPLVDAASPLLLLVVRLRQGAEPPDPAALRQRLVEEIRRFERRLRAAGYSPEDIEAARYALCALLDEAVLNTPWGG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  96 GGVWPGSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDnGRSQLETIKQRLLQMIRSV 175
Cdd:COG3455    90 RSEWSRHPLQSTFFNETWGGEKFFELLERLLQEPAAHLDLLELYYLCLLLGFEGRYRVEG-GREELEALRRRLYQLIRRL 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1848400190 176 RGSYAPPLSVHRKDHPVTRKLWCPVVPLWACTAVVGFLACLLYILLNWRLGYYTSPVLASVYQ 238
Cdd:COG3455   169 RGEPPAPLSPHWQGPDAARKRLRRRLPLWVLAAVAALVLLLLYLGLSYRLNSQTDPVLAQLNQ 231
DotU pfam09850
Type VI secretion system protein DotU; DotU is a family of Gram-negative bacterial proteins ...
 21-224 3.01e-75

Type VI secretion system protein DotU; DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.


Pssm-ID: 430877 [Multi-domain]  Cd Length: 205  Bit Score: 232.96  E-value: 3.01e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  21 PLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGGGGVWP 100
Cdd:pfam09850   1 PLLDAASPLLLLVARLRQGARHPDAAALRERLVAELRAFEQEARAAGYSAEDIEAARYALCAFLDEAVLNTPWGGRSEWA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 101 GSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIRSVRGSYA 180
Cdd:pfam09850  81 RRPLQSRFFGETWGGEKFFDRLDRLLEDPAENLDLLELYYLCLSLGFEGRYRVEPDGEAELEALRQRLYQQIRRLRGEAP 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1848400190 181 PPLSVH-RKDHPVTRKLWCPVVPLWACTAVVGFLACLLYILLNWR 224
Cdd:pfam09850 161 AALSPHwQPGVAAARRPLRRRVPLWVIAALAALLLLLLYLGLSYR 205
IV_VI_DotU TIGR03349
type IV / VI secretion system protein, DotU family; At least two families of proteins, often ...
 32-214 2.18e-57

type IV / VI secretion system protein, DotU family; At least two families of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (TIGR03348). The other is the family described by this model. Members include DotU from the Legionella pneumophila type IV secretion system. Many of the members of this protein family from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274532 [Multi-domain]  Cd Length: 183  Bit Score: 186.32  E-value: 2.18e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  32 AIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGGGGVWPGSGLLVTFHNE 111
Cdd:TIGR03349   1 LVTQLRATPAPPDVEALREQLVEELRLFERRLRAAGYSSEDIEAARYALCALLDEAVLNTPWGGRSVWSRQPLLSRFHNE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 112 TWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIRSVRGSYAPPLS-----VH 186
Cdd:TIGR03349  81 TWGGEKFFERLERLLADPAEHLDLLELYYLCLSLGFEGKYRVEEDGREQLEALRDRLYRLLRGARGPVPPALSphwqgPA 160

                         170       180
                  ....*....|....*....|....*...
gi 1848400190 187 RKDHPVTRKlwcpvVPLWACTAVVGFLA 214
Cdd:TIGR03349 161 AARRRLRRY-----VPLWVILALAALVL 183
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 259-394 2.52e-57

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 184.43  E-value: 2.52e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 259 LKTFLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRSARFSS 338
Cdd:TIGR03350   2 LRALLAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRITVVGHTDNVPIRTARFPS 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1848400190 339 NYELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITL 394
Cdd:TIGR03350  82 NWHLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
MotB COG1360
Flagellar motor protein MotB [Cell motility];
261-395 5.63e-41

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 143.06  E-value: 5.63e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 261 TFLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRSARFSSNY 340
Cdd:COG1360    33 SALEENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPNRIRVEGHTDNVPISTARFPSNW 112

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1848400190 341 ELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLL 395
Cdd:COG1360   113 ELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVIL 167
IcmH_DotU_IVB NF038228
type IVB secretion system protein IcmH/DotU;
20-233 1.79e-39

type IVB secretion system protein IcmH/DotU;


Pssm-ID: 439529 [Multi-domain]  Cd Length: 258  Bit Score: 141.85  E-value: 1.79e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  20 NPLVAAANPLLNAIPQIRNSVSHPDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDEAAALTPWGGGGVW 99
Cdd:NF038228   39 NPLVAAAGPLLSLLERLRVSPSLPNVPGIRENIEHELKAFHSKLRSLGYPEELIAIARYLLCATIDELLGKSYLRLYGEE 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 100 PG-SGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIRSVRGS 178
Cdd:NF038228  119 SEfKAFTPLSHDETGPGERFFDILNRIKERPNQYLDLLELAYYCLILGFEGEYHEKADGRQVLDNLIEDLYQLIRQYRVN 198

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1848400190 179 YAPPLSvHRKDHPVTRKLwcPVVPLWACTAVVGFLACLLYILLNWRLGYYTSPVL 233
Cdd:NF038228  199 KSHRLF-KEQPNPKNTKK--NYKPLWAVTIVAVGLLILTYLVSHVLLENKAKTVQ 250
PRK07034 PRK07034
hypothetical protein; Provisional
 20-392 1.03e-37

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 143.39  E-value: 1.03e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  20 NPLVAAANPLLNAIPQIRNSVSHpDPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLCTALDeaaALTPWGGGGVW 99
Cdd:PRK07034  142 NAYIAAAMPLLLLVENIRSWPTR-NAAEVRPPIVRELQYFQQHLQKKNYPQEDINHLSYLLCTYID---GIFNGLQTPDS 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 100 PGSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRSQLETIKQRLLQMIRSVRGSY 179
Cdd:PRK07034  218 YNQSLLVEFHRDAWGGEDCFEHLRVYMNSPKQYREVLEFYDLIMCLGFDGKYQMIEHGAVLLMDLRSRLHTQLYGQDATQ 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 180 APPLSVHRKDHPvtRKLWCPVVPLWactaVVGFLACLL-YILLNWRLGYYTSPVLASVYQTALPE---VTIHDPAPAPpt 255
Cdd:PRK07034  298 SLAIAQAVKGSP--RRQYIKALKIF----TYGFALCLCaYGVTAWYLHQQSQQIRSNILTWVLPEprkINIMETLPNP-- 369

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 256 aldlktfLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLN--RIAAAMNKVSGRLLVVGYSDNVPIRS 333
Cdd:PRK07034  370 -------LSNILNEGWLEVRKDPRGWLLIFTSDGAFRTGEATLSEEFINKKNieRLGLALAPWPGDIEVIGHTDNKPFRS 442

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1848400190 334 ARFSSNYELSLARAQSVTEQL----QKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEI 392
Cdd:PRK07034  443 TSGNNNLKLSAARASVVADKLrestQINETHQREISAIGRGESDPLADNATEEGRKRNRRVDI 505
motB PRK08944
flagellar motor protein MotB; Reviewed
 263-395 1.18e-34

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 130.13  E-value: 1.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 263 LSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRSARFSSNYEL 342
Cdd:PRK08944  155 LEKEIEDGAIEIESLGQQIIIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGHTDNVPISSELYRSNWDL 234

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1848400190 343 SLARAQSVTEQLQK-HLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLL 395
Cdd:PRK08944  235 SSARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIIIE 288
PRK14693 PRK14693
hypothetical protein; Provisional
 4-398 4.20e-33

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 130.65  E-value: 4.20e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190   4 ELYADAQAWVSGANSHNPLVAAANPllnAIPQI-RNSVSHP-DPAGLRLRLIDEIRQFEINCQRAGLPYEAIIGARYCLC 81
Cdd:PRK14693  100 EQAAIMKAGLQQASWNNPFVSHALP---AVLQLqRHLAAGPlNQAAIRTQLGLEVRLYRERLAASGCEWEQIRDASYLLC 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190  82 TALDEAA--ALTPWGGGGVWPGSGLLVTFHNETWGGEKFFQLLARLSQTPREQIALLELINFCLQMGFEGRYRVMDNGRS 159
Cdd:PRK14693  177 TYLDETVndAAREHAQVVYDGERSLLVEFHDDAWGGEDAFADLSRWMKTEPPPIPLLSFYELILSLGWQGRYRVLDRGDV 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 160 QLETIKQRLLQMIrsvrGSYAP--PLSVHRKDHPVTRKLWcpvvplW----ACTAVVGFLAcLLYILLNWRLGYYTSPVL 233
Cdd:PRK14693  257 LLQDLRSQLHALI----WHHVPpePLGTELVAPAKRRRSW------WtagrAAAVALGVLV-LAYGAISFWLDSQGRPIR 325

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 234 ASVYQTALPEVTIHDPAPAPPTaldlktfLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAM 313
Cdd:PRK14693  326 NALAAWMPPTRTINIAETLPPP-------LPQILTEGWLTAYKHPQGWLLVFKSDGAFDVGKANVRADFMHNIERLGLAF 398

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 314 NKVSGRLLVVGYSDNVPIRSARFSSNYELSLARAQSVTEQLQKHL----------SQPQRVKAEGRGDSNPIAPNNSAAN 383
Cdd:PRK14693  399 APWPGDLEVIGHTDSRPIRTSEFPDNQALSEARARNVADELRKTAlpggarapenAVQRNIEYSGRGDAQPIDTAKTAAA 478

                         410
                  ....*....|....*
gi 1848400190 384 RARNRRVEITLLVAP 398
Cdd:PRK14693  479 YERNRRVDVLWKVIP 493
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 290-394 1.29e-29

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 110.72  E-value: 1.29e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 290 LFSSAGTSVSDGYASVLNRIAAAMNKVSG-RLLVVGYSDNVpirsARFSSNYELSLARAQSVTEQLQKHLSQPQRVKAEG 368
Cdd:cd07185     5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100
                  ....*....|....*....|....*.
gi 1848400190 369 RGDSNPIAPNNSAANRARNRRVEITL 394
Cdd:cd07185    81 YGESRPIASNDTEEGRAKNRRVEIVI 106
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 256-395 3.70e-26

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 106.63  E-value: 3.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 256 ALDLKTFLSPEIEQGLVSVRdEADRSV-VTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRSA 334
Cdd:PRK09038  102 ADDLRKALGPLIESGQVTVR-RNELWIeIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPNPIHVEGFTDNVPIATA 180

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1848400190 335 RFSSNYELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLL 395
Cdd:PRK09038  181 QFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 227-395 6.18e-23

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 97.93  E-value: 6.18e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 227 YYTSPVLASVYQTALPEVTIHDPAPAPPTALDLKTFLSPEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVL 306
Cdd:COG2885   127 GAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAAL 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 307 NRIAAAMNKVSG-RLLVVGYSDNVpirsARFSSNYELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRA 385
Cdd:COG2885   207 DELAALLKENPDlRIEIEGHTDSR----GSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRA 282

                         170
                  ....*....|
gi 1848400190 386 RNRRVEITLL 395
Cdd:COG2885   283 KNRRVEIVVL 292
PRK06925 PRK06925
flagellar motor protein MotB;
275-392 7.85e-19

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 84.82  E-value: 7.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 275 RDEadRSVV-TLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRSARFSSNYELSLARAQSVTEQ 353
Cdd:PRK06925  107 RDE--RGVVlVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIPNDIKVEGHTDSRPISTYRYPSNWELSAARASSVIRY 184

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1848400190 354 LQKHLS-QPQRVKAEGRGDSNPIAPNNSAANRARNRRVEI 392
Cdd:PRK06925  185 FTSKEKlDSSRFIAVGYADTKPVVPNTTEENMQENRRVEI 224
motB PRK08457
flagellar motor protein MotB; Reviewed
 269-404 2.13e-18

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 84.38  E-value: 2.13e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 269 QGLVSVRDEADRSVVTLKGDGLFSSAGTS--VSDGYASVLNRIAAAMNKVSGRLLVV--GYSDNVPIRSARFSSNYELSL 344
Cdd:PRK08457  103 KGEGGALDQIDNGIALKLPSKLLFENGSAeiINADMMDYLKRIAKIITKLPKQVKINvrGYTDNSPLNKSRYKDHYELAA 182

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 345 ARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLLVAPGNTHAQ 404
Cdd:PRK08457  183 ARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEIFFKVDANDTSTQ 242
motB PRK07734
flagellar motor protein MotB; Reviewed
 283-395 2.65e-18

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 84.02  E-value: 2.65e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 283 VTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVV-GYSDNVPIRSARFSSNYELSLARAQSVTEQL--QKHLs 359
Cdd:PRK07734  138 ITILDNILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITIsGHTDNVPIANAQFASNWELSVMRAVNFMQVLleNKEL- 216

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1848400190 360 QPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLL 395
Cdd:PRK07734  217 DPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLIL 252
PRK09039 PRK09039
peptidoglycan -binding protein;
274-394 2.41e-16

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 79.62  E-value: 2.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 274 VRDEADRSVvtLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGR--------LLVVGYSDNVPIRSA-RFSSNYELSL 344
Cdd:PRK09039  213 IRIVGDRFV--FQSEVLFPTGSAELNPEGQAEIAKLAAALIELAKEippeinwvLRVDGHTDNVPLSGTgRFRDNWELSS 290

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1848400190 345 ARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITL 394
Cdd:PRK09039  291 ARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIELKL 340
motB PRK06667
flagellar motor protein MotB; Validated
 265-395 2.25e-15

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 75.22  E-value: 2.25e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 265 PEIEQGLVSVRDEADRSVVTLKGDGLFSSAGTSVS-DGYASVLNRIAA---AMNKVSGRLLVVGYSDNVPIRSAR-FSSN 339
Cdd:PRK06667  103 PEIQSNKVAVTEDERGLVISLASDAFFYPGSAEVKlEENRETLQKIASfigFLDLAGRNFRIEGHTDNVDVNPEGpWKSN 182

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1848400190 340 YELSLARAQSVTEQLQKHLSQ-PQRVKAEGRGDSNPIAPNNSAANRARNRRVEITLL 395
Cdd:PRK06667  183 WELSGARAVNMLEYILNYGDQsESWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVIL 239
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 275-392 2.58e-15

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 74.71  E-value: 2.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 275 RDEADRSVVTLKgDGLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRSARFSSNYELSLARAQSVTEQL 354
Cdd:PRK06742  104 REDTGVSVVIVD-NLIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHL 182

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1848400190 355 -QKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEI 392
Cdd:PRK06742  183 iEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVI 221
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 291-387 9.89e-15

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 69.31  E-value: 9.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 291 FSSAGTSVSDGYASVLNRIAAAMNKVS--GRLLVVGYSDNVPIRSArfssNYELSLARAQSVTEQLQKHLSQPQRVKAEG 368
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElkNTITIEGHTDTVGSAAY----NWELSQRRAEAVRRYLVNFGVPPSRISVVG 76

                          90
                  ....*....|....*....
gi 1848400190 369 RGDSNPIAPNNSAANRARN 387
Cdd:pfam00691  77 YGATKPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
272-394 8.49e-14

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 70.29  E-value: 8.49e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 272 VSVRDEADRSVVTLKGDGLFSSAGTSVSDGYASVLNRIAAAMNKV-SGRLLVVGYSDNVPIRSArfssNYELSLARAQSV 350
Cdd:PRK10510   97 VSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYpKTAVNVVGYTDSTGSHDL----NMRLSQQRADSV 172

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1848400190 351 TEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEITL 394
Cdd:PRK10510  173 ASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITL 216
PRK09040 PRK09040
hypothetical protein; Provisional
 320-393 2.50e-12

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 65.81  E-value: 2.50e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1848400190 320 LLVVGYSDNVPIRSA--RFSSNYELSLARAQSVTEQLQKHLSQPQRVKAEGRGDSNPIAPNNSAANRARNRRVEIT 393
Cdd:PRK09040  125 LMVSGFTDDQPVRAGnrRFADNWELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEIA 200
PRK10808 PRK10808
outer membrane protein A; Reviewed
 238-392 2.77e-08

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 55.08  E-value: 2.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 238 QTALPEVTihdPAPAPPTALDLKTFlspeieqglvsvrdeadrsvvTLKGDGLFS-------SAGTSVSDGYASVLnria 310
Cdd:PRK10808  199 EEAAPVVA---PAPAPAPVVQTKHF---------------------TLKSDVLFNfnkatlkPEGQQALDQLYSQL---- 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 311 AAMNKVSGRLLVVGYSDNvpIRSARFssNYELSLARAQSVTEQL-QKHLSQpQRVKAEGRGDSNPIAPNNSAANRAR--- 386
Cdd:PRK10808  251 SNLDPKDGSVVVLGYTDR--IGSDAY--NQGLSEKRAQSVVDYLvSKGIPA-DKISARGMGKSNPVTGNTCDNVKPRaal 325

                         170
                  ....*....|..
gi 1848400190 387 ------NRRVEI 392
Cdd:PRK10808  326 idclapDRRVEI 337
motB PRK05996
MotB family protein;
266-399 5.62e-07

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 51.24  E-value: 5.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 266 EIEQG-LVSVRDEADrsvvtlkgDGLFSsAGTSVSD-GYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRSARFSsNYELS 343
Cdd:PRK05996  300 PVEGGlLISLTDQVD--------YGMFA-IGSAVPRaELVLAMEKIGQLLAERPGAVIIRGHTDARPFKSATYD-NWRLS 369

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1848400190 344 LARAQSVTEQLQKHLSQPQRVK-AEGRGDSNPIAPNNSAAnrARNRRVEItLLVAPG 399
Cdd:PRK05996  370 TARAQSAYYMLVRGGLDEKRIEqVEGFADRRPKLPNDPNA--AANRRIEI-LIQSKQ 423
PRK09967 PRK09967
OmpA family protein;
324-394 1.50e-05

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 44.97  E-value: 1.50e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1848400190 324 GYSDNVpirsARFSSNYELSLARAQSVTEQLQKHLSQPQ-RVKAEGRGDSNPIAPNNSAANRARNRRVEITL 394
Cdd:PRK09967   90 GHTDNY----GEDSYNEGLSLKRANVVADAWAMGGQIPRsNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
PRK06778 PRK06778
hypothetical protein; Validated
 256-408 1.16e-03

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 40.68  E-value: 1.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1848400190 256 ALDLKTFLSPEI-EQGL-VSVRDEADRSvvtlkgdgLFSSAGTSVSDGYASVLNRIAAAMNKVSGRLLVVGYSDNVPIRS 333
Cdd:PRK06778  127 DAHMEANLEMEIvPQGLrVLIKDDQNRN--------MFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKN 198

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1848400190 334 ARFSsNYELSLARAQSVTEQL-QKHLSQPQRVKAEGRGDSNPIAPNNSAAnrARNRRVEITLLV-APGNTHAQFNGQ 408
Cdd:PRK06778  199 NIYN-NWNLSGDRALSARRVLeEAGMPEDKVMQVSAMADQMLLDAKNPQS--AGNRRIEIMVLTkSASDTLYQYFGQ 272
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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