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Conserved domains on  [gi|1845202282|ref|WP_171773970|]
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MULTISPECIES: TraY domain-containing protein [Enterobacterales]

Protein Classification

similar to relaxosome protein TraY( domain architecture ID 11486828)

protein similar to relaxosome protein TraY

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
2-68 9.86e-26

conjugal transfer relaxosome protein TraY;


:

Pssm-ID: 184292  Cd Length: 70  Bit Score: 89.46  E-value: 9.86e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1845202282  2 RSNARPAPGKNVLLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSELAVPGGEKEE 68
Cdd:PRK13740   3 RRNTRPAPGRKVSLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEIFREVAEETE 69
 
Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
2-68 9.86e-26

conjugal transfer relaxosome protein TraY;


Pssm-ID: 184292  Cd Length: 70  Bit Score: 89.46  E-value: 9.86e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1845202282  2 RSNARPAPGKNVLLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSELAVPGGEKEE 68
Cdd:PRK13740   3 RRNTRPAPGRKVSLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEIFREVAEETE 69
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 13-59 1.53e-18

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 70.74  E-value: 1.53e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1845202282 13 VLLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSEL 59
Cdd:pfam05509  1 VTLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEK 47
 
Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
2-68 9.86e-26

conjugal transfer relaxosome protein TraY;


Pssm-ID: 184292  Cd Length: 70  Bit Score: 89.46  E-value: 9.86e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1845202282  2 RSNARPAPGKNVLLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSELAVPGGEKEE 68
Cdd:PRK13740   3 RRNTRPAPGRKVSLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEIFREVAEETE 69
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 13-59 1.53e-18

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 70.74  E-value: 1.53e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1845202282 13 VLLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSEL 59
Cdd:pfam05509  1 VTLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEK 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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