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Conserved domains on  [gi|1843841494|ref|WP_171314946|]
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hypothetical protein [Vibrio splendidus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6359 super family cl45274
Domain of unknown function (DUF6359); This family of proteins is functionally uncharacterized. ...
 42-82 3.23e-04

Domain of unknown function (DUF6359); This family of proteins is functionally uncharacterized. This family of proteins is primarily found in bacteria. This entry may represent an Ig-like fold.


The actual alignment was detected with superfamily member pfam19886:

Pssm-ID: 437718  Cd Length: 111  Bit Score: 38.32  E-value: 3.23e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1843841494  42 AYSGDTWAGWKGYIVGTWDKSQIGHALLSPTFDFMFPILIA 82
Cdd:pfam19886   8 ANQGGGQVWVKGYIVGYAGGSSIKNAVFEAPFTNDTNILIA 48
 
Name Accession Description Interval E-value
DUF6359 pfam19886
Domain of unknown function (DUF6359); This family of proteins is functionally uncharacterized. ...
 42-82 3.23e-04

Domain of unknown function (DUF6359); This family of proteins is functionally uncharacterized. This family of proteins is primarily found in bacteria. This entry may represent an Ig-like fold.


Pssm-ID: 437718  Cd Length: 111  Bit Score: 38.32  E-value: 3.23e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1843841494  42 AYSGDTWAGWKGYIVGTWDKSQIGHALLSPTFDFMFPILIA 82
Cdd:pfam19886   8 ANQGGGQVWVKGYIVGYAGGSSIKNAVFEAPFTNDTNILIA 48
 
Name Accession Description Interval E-value
DUF6359 pfam19886
Domain of unknown function (DUF6359); This family of proteins is functionally uncharacterized. ...
 42-82 3.23e-04

Domain of unknown function (DUF6359); This family of proteins is functionally uncharacterized. This family of proteins is primarily found in bacteria. This entry may represent an Ig-like fold.


Pssm-ID: 437718  Cd Length: 111  Bit Score: 38.32  E-value: 3.23e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1843841494  42 AYSGDTWAGWKGYIVGTWDKSQIGHALLSPTFDFMFPILIA 82
Cdd:pfam19886   8 ANQGGGQVWVKGYIVGYAGGSSIKNAVFEAPFTNDTNILIA 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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