MULTISPECIES: helix-turn-helix domain-containing protein, partial [Enterobacteriaceae]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
mpi super family | cl32873 | master DNA invertase Mpi family serine-type recombinase; |
4-78 | 2.37e-14 | ||
master DNA invertase Mpi family serine-type recombinase; The actual alignment was detected with superfamily member PRK13413: Pssm-ID: 184041 [Multi-domain] Cd Length: 200 Bit Score: 64.35 E-value: 2.37e-14
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Name | Accession | Description | Interval | E-value | |||
mpi | PRK13413 | master DNA invertase Mpi family serine-type recombinase; |
4-78 | 2.37e-14 | |||
master DNA invertase Mpi family serine-type recombinase; Pssm-ID: 184041 [Multi-domain] Cd Length: 200 Bit Score: 64.35 E-value: 2.37e-14
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SpoIVCA | COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and ... |
1-76 | 3.44e-11 | |||
Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and repair]; Pssm-ID: 441564 [Multi-domain] Cd Length: 388 Bit Score: 56.96 E-value: 3.44e-11
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Resolvase | pfam00239 | Resolvase, N terminal domain; The N-terminal domain of the resolvase family (this family) ... |
1-28 | 2.31e-06 | |||
Resolvase, N terminal domain; The N-terminal domain of the resolvase family (this family) contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase - see pfam02796. Pssm-ID: 425548 [Multi-domain] Cd Length: 144 Bit Score: 42.26 E-value: 2.31e-06
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Resolvase | smart00857 | Resolvase, N terminal domain; The N-terminal domain of the resolvase family contains the ... |
1-28 | 4.96e-05 | |||
Resolvase, N terminal domain; The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase. Pssm-ID: 214861 [Multi-domain] Cd Length: 148 Bit Score: 38.76 E-value: 4.96e-05
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transpos_IS630 | NF033545 | IS630 family transposase; |
45-79 | 2.03e-04 | |||
IS630 family transposase; Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 37.62 E-value: 2.03e-04
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transpos_IS21 | NF033546 | IS21 family transposase; |
49-76 | 3.38e-04 | |||
IS21 family transposase; Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 37.19 E-value: 3.38e-04
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SR_ResInv | cd03768 | Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members ... |
1-18 | 1.04e-03 | |||
Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1. Pssm-ID: 239737 [Multi-domain] Cd Length: 126 Bit Score: 35.15 E-value: 1.04e-03
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Sig70_bacteroi1 | TIGR02985 | RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
45-70 | 4.97e-03 | |||
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium. Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 33.30 E-value: 4.97e-03
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Name | Accession | Description | Interval | E-value | |||
mpi | PRK13413 | master DNA invertase Mpi family serine-type recombinase; |
4-78 | 2.37e-14 | |||
master DNA invertase Mpi family serine-type recombinase; Pssm-ID: 184041 [Multi-domain] Cd Length: 200 Bit Score: 64.35 E-value: 2.37e-14
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SpoIVCA | COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and ... |
1-76 | 3.44e-11 | |||
Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and repair]; Pssm-ID: 441564 [Multi-domain] Cd Length: 388 Bit Score: 56.96 E-value: 3.44e-11
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Resolvase | pfam00239 | Resolvase, N terminal domain; The N-terminal domain of the resolvase family (this family) ... |
1-28 | 2.31e-06 | |||
Resolvase, N terminal domain; The N-terminal domain of the resolvase family (this family) contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase - see pfam02796. Pssm-ID: 425548 [Multi-domain] Cd Length: 144 Bit Score: 42.26 E-value: 2.31e-06
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FixJ | COG4566 | DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal ... |
6-81 | 3.94e-05 | |||
DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal transduction mechanisms, Transcription]; Pssm-ID: 443623 [Multi-domain] Cd Length: 196 Bit Score: 39.31 E-value: 3.94e-05
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Resolvase | smart00857 | Resolvase, N terminal domain; The N-terminal domain of the resolvase family contains the ... |
1-28 | 4.96e-05 | |||
Resolvase, N terminal domain; The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase. Pssm-ID: 214861 [Multi-domain] Cd Length: 148 Bit Score: 38.76 E-value: 4.96e-05
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COG4584 | COG4584 | Transposase [Mobilome: prophages, transposons]; |
45-76 | 1.41e-04 | |||
Transposase [Mobilome: prophages, transposons]; Pssm-ID: 443641 [Multi-domain] Cd Length: 484 Bit Score: 38.28 E-value: 1.41e-04
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transpos_IS630 | NF033545 | IS630 family transposase; |
45-79 | 2.03e-04 | |||
IS630 family transposase; Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 37.62 E-value: 2.03e-04
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transpos_IS21 | NF033546 | IS21 family transposase; |
49-76 | 3.38e-04 | |||
IS21 family transposase; Pssm-ID: 468077 [Multi-domain] Cd Length: 296 Bit Score: 37.19 E-value: 3.38e-04
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SR_ResInv | cd03768 | Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members ... |
1-18 | 1.04e-03 | |||
Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1. Pssm-ID: 239737 [Multi-domain] Cd Length: 126 Bit Score: 35.15 E-value: 1.04e-03
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Sig70_bacteroi1 | TIGR02985 | RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
45-70 | 4.97e-03 | |||
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium. Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 33.30 E-value: 4.97e-03
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InsA | COG3677 | Transposase InsA [Mobilome: prophages, transposons]; |
45-78 | 9.78e-03 | |||
Transposase InsA [Mobilome: prophages, transposons]; Pssm-ID: 442893 [Multi-domain] Cd Length: 241 Bit Score: 32.92 E-value: 9.78e-03
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Blast search parameters | ||||
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