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Conserved domains on  [gi|1816645982|ref|WP_163596460|]
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M1 family metallopeptidase, partial [Klebsiella pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PepN super family cl43098
Aminopeptidase N, contains DUF3458 domain [Amino acid transport and metabolism];
4-80 6.06e-15

Aminopeptidase N, contains DUF3458 domain [Amino acid transport and metabolism];


The actual alignment was detected with superfamily member COG0308:

Pssm-ID: 440077 [Multi-domain]  Cd Length: 609  Bit Score: 67.75  E-value: 6.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816645982   4 DEKFRDMLRFLNKKFYHQTVTADDIRKAMESFTGFALDKIFNQYLHTTQVPVLEYKTD-----GGQFSCRWSNCVEG-FN 77
Cdd:COG0308   396 DEAFRAGLRLYFARHAGGNATTEDFLAALEEASGRDLSAFFDQWLYQAGLPTLEVEYEydadgKVTLTLRQTPPRPHpFH 475

                  ...
gi 1816645982  78 LPV 80
Cdd:COG0308   476 IPL 478
 
Name Accession Description Interval E-value
PepN COG0308
Aminopeptidase N, contains DUF3458 domain [Amino acid transport and metabolism];
4-80 6.06e-15

Aminopeptidase N, contains DUF3458 domain [Amino acid transport and metabolism];


Pssm-ID: 440077 [Multi-domain]  Cd Length: 609  Bit Score: 67.75  E-value: 6.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816645982   4 DEKFRDMLRFLNKKFYHQTVTADDIRKAMESFTGFALDKIFNQYLHTTQVPVLEYKTD-----GGQFSCRWSNCVEG-FN 77
Cdd:COG0308   396 DEAFRAGLRLYFARHAGGNATTEDFLAALEEASGRDLSAFFDQWLYQAGLPTLEVEYEydadgKVTLTLRQTPPRPHpFH 475

                  ...
gi 1816645982  78 LPV 80
Cdd:COG0308   476 IPL 478
M1_APN_like cd09603
Peptidase M1 family similar to aminopeptidase N catalytic domain; This family contains mostly ...
3-49 6.67e-11

Peptidase M1 family similar to aminopeptidase N catalytic domain; This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.


Pssm-ID: 341066 [Multi-domain]  Cd Length: 410  Bit Score: 56.44  E-value: 6.67e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1816645982   3 DDEKFRDMLRFLNKKFYHQTVTADDIRKAMESFTGFALDKIFNQYLH 49
Cdd:cd09603   364 GDEAFFAALRAYLARYAHGNVTTEDFIAAAEEVSGRDLTWFFDQWLY 410
PHA00144 PHA00144
major head protein
15-60 3.48e-03

major head protein


Pssm-ID: 222777  Cd Length: 438  Bit Score: 34.48  E-value: 3.48e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1816645982  15 NKKFYHQTVTADDIRKAMESFTGFA--LDKIFNQYLHTTQVPVLEYKT 60
Cdd:PHA00144  129 RQNFYKQTIQRDSLKTAFVSDGNFDefLSSIITSIYSSDEVDEYEYMK 176
 
Name Accession Description Interval E-value
PepN COG0308
Aminopeptidase N, contains DUF3458 domain [Amino acid transport and metabolism];
4-80 6.06e-15

Aminopeptidase N, contains DUF3458 domain [Amino acid transport and metabolism];


Pssm-ID: 440077 [Multi-domain]  Cd Length: 609  Bit Score: 67.75  E-value: 6.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1816645982   4 DEKFRDMLRFLNKKFYHQTVTADDIRKAMESFTGFALDKIFNQYLHTTQVPVLEYKTD-----GGQFSCRWSNCVEG-FN 77
Cdd:COG0308   396 DEAFRAGLRLYFARHAGGNATTEDFLAALEEASGRDLSAFFDQWLYQAGLPTLEVEYEydadgKVTLTLRQTPPRPHpFH 475

                  ...
gi 1816645982  78 LPV 80
Cdd:COG0308   476 IPL 478
M1_APN_like cd09603
Peptidase M1 family similar to aminopeptidase N catalytic domain; This family contains mostly ...
3-49 6.67e-11

Peptidase M1 family similar to aminopeptidase N catalytic domain; This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.


Pssm-ID: 341066 [Multi-domain]  Cd Length: 410  Bit Score: 56.44  E-value: 6.67e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1816645982   3 DDEKFRDMLRFLNKKFYHQTVTADDIRKAMESFTGFALDKIFNQYLH 49
Cdd:cd09603   364 GDEAFFAALRAYLARYAHGNVTTEDFIAAAEEVSGRDLTWFFDQWLY 410
COG3975 COG3975
Predicted metalloprotease, contains C-terminal PDZ domain [General function prediction only];
9-63 3.79e-04

Predicted metalloprotease, contains C-terminal PDZ domain [General function prediction only];


Pssm-ID: 443174 [Multi-domain]  Cd Length: 591  Bit Score: 37.11  E-value: 3.79e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1816645982   9 DMLRFLNKKFYHQ--TVTADDIRKAMESFTGFALDKIFNQYLHTTQ-VPVLEYKTDGG 63
Cdd:COG3975   413 DVMRALWQRYGKTgiGYTEDDVQAALEEVAGYDLADFFDRYVYGTEdLPLAELLAPFG 470
PHA00144 PHA00144
major head protein
15-60 3.48e-03

major head protein


Pssm-ID: 222777  Cd Length: 438  Bit Score: 34.48  E-value: 3.48e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1816645982  15 NKKFYHQTVTADDIRKAMESFTGFA--LDKIFNQYLHTTQVPVLEYKT 60
Cdd:PHA00144  129 RQNFYKQTIQRDSLKTAFVSDGNFDefLSSIITSIYSSDEVDEYEYMK 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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