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Conserved domains on  [gi|1815992105|ref|WP_163138722|]
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MULTISPECIES: glutamine ABC transporter permease GlnP [Arhodomonas]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 1-218 1.37e-110

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK09494:

Pssm-ID: 444901 [Multi-domain]  Cd Length: 219  Bit Score: 315.84  E-value: 1.37e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   1 MQFDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPI 80
Cdd:PRK09494    1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  81 LL-DVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLK 159
Cdd:PRK09494   81 AFnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIK 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1815992105 160 DTSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRMKIL 218
Cdd:PRK09494  161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMKIL 219
 
Name Accession Description Interval E-value
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 1-218 1.37e-110

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 315.84  E-value: 1.37e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   1 MQFDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPI 80
Cdd:PRK09494    1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  81 LL-DVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLK 159
Cdd:PRK09494   81 AFnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIK 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1815992105 160 DTSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRMKIL 218
Cdd:PRK09494  161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMKIL 219
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 1.33e-78

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 234.58  E-value: 1.33e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   1 MQFDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPi 80
Cdd:COG0765     1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLP- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  81 LLDVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKD 160
Cdd:COG0765    80 LLGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKD 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1815992105 161 TSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRMKI 217
Cdd:COG0765   160 TSLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 12-216 2.43e-38

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 131.89  E-value: 2.43e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  12 LPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPiLLDVRLDALTS 91
Cdd:TIGR03004   4 LPLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLP-LIGLSLDPVTT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  92 AVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTSLFIVIGVAE 171
Cdd:TIGR03004  83 GVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLAD 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1815992105 172 LTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRMK 216
Cdd:TIGR03004 163 LTFAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVR 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 19-206 4.72e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.78  E-value: 4.72e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  19 ARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILLDVRLDALTSAVSAIV- 97
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILa 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  98 -INAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTSLFIVIGVAELTRQG 176
Cdd:cd06261    81 lLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1815992105 177 QEVMASTFRAVEIWSTVAVLYLAMTLTMTL 206
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 33-217 3.54e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.62  E-value: 3.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  33 GFAIGVVAGTARaygNRAVNAIAMAYIELIRGTPIVVQVMFIYfaMPILLDVRLDALTSAVSAIVINAGAYIAEIVRGAL 112
Cdd:pfam00528   1 GIPLGIIAALRR---GRRLDRLLRPLIDLLQALPSFVLAILLV--VIAILSILGHGILPAIILALLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105 113 LSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTSLFIVI----GVAELTRQGQEVMASTFrAVE 188
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPE-IQG 154

                         170       180
                  ....*....|....*....|....*....
gi 1815992105 189 IWSTVAVLYLAMTLTMTLALRIIERRMKI 217
Cdd:pfam00528 155 PVLAAALILLLLNLLVDILQRLLDPRVRK 183
 
Name Accession Description Interval E-value
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 1-218 1.37e-110

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 315.84  E-value: 1.37e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   1 MQFDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPI 80
Cdd:PRK09494    1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  81 LL-DVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLK 159
Cdd:PRK09494   81 AFnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIK 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1815992105 160 DTSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRMKIL 218
Cdd:PRK09494  161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMKIL 219
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 1.33e-78

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 234.58  E-value: 1.33e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   1 MQFDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPi 80
Cdd:COG0765     1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLP- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  81 LLDVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKD 160
Cdd:COG0765    80 LLGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKD 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1815992105 161 TSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRMKI 217
Cdd:COG0765   160 TSLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 3-215 2.88e-55

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 175.67  E-value: 2.88e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   3 FDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILL 82
Cdd:COG4160     1 MDLDLLFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  83 DVRLDALTS--------AVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQC 154
Cdd:COG4160    81 WVRESWLWPllrdpwfcALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1815992105 155 IISLKDTSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRM 215
Cdd:COG4160   161 ILMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRL 221
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
13-214 2.83e-46

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 152.97  E-value: 2.83e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  13 PELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILL---------- 82
Cdd:COG4215    16 PALLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQILLnaladlfgyd 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  83 -DVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDT 161
Cdd:COG4215    96 gFIEINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAARAYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDT 175

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1815992105 162 SLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERR 214
Cdd:COG4215   176 ALVSVIGLVDLVRQAQEAAGSTREPFTFYLAAALIYLALTTVSELVLARLERR 228
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 12-216 2.43e-38

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 131.89  E-value: 2.43e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  12 LPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPiLLDVRLDALTS 91
Cdd:TIGR03004   4 LPLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLP-LIGLSLDPVTT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  92 AVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTSLFIVIGVAE 171
Cdd:TIGR03004  83 GVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLAD 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1815992105 172 LTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRMK 216
Cdd:TIGR03004 163 LTFAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVR 207
PRK15100 PRK15100
cystine ABC transporter permease;
1-215 5.95e-37

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 128.71  E-value: 5.95e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   1 MQFDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPi 80
Cdd:PRK15100    1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLP- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  81 LLDVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKD 160
Cdd:PRK15100   80 QFGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKD 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1815992105 161 TSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRM 215
Cdd:PRK15100  160 TSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQL 214
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 3-215 3.73e-34

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 121.11  E-value: 3.73e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   3 FDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILl 82
Cdd:TIGR03003   1 WDWEFVRQILPTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDI- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  83 DVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTS 162
Cdd:TIGR03003  80 GIRLPALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETP 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1815992105 163 LFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRM 215
Cdd:TIGR03003 160 VLSAITVLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
PRK15069 PRK15069
histidine ABC transporter permease HisM;
16-214 4.34e-28

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 105.90  E-value: 4.34e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  16 FAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILLDVR----LDA--- 88
Cdd:PRK15069   20 FTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMYSLEIVRgtdlLDAffr 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  89 --LTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTSLFIV 166
Cdd:PRK15069  100 sgLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFT 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1815992105 167 IGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERR 214
Cdd:PRK15069  180 ATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISLFRRAERR 227
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
2-214 4.05e-25

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 97.98  E-value: 4.05e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   2 QFDFSVIPQALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPIL 81
Cdd:PRK15107    3 EFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  82 L----------DVRLdalTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLG 151
Cdd:PRK15107   83 LqnvlglspktDIRL---ISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLL 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1815992105 152 NQCIISLKDTSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERR 214
Cdd:PRK15107  160 TQGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKKR 222
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 11-110 1.15e-24

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 92.98  E-value: 1.15e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  11 ALPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPiLLDVRLDALT 90
Cdd:TIGR01726   1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLP-LIGIRLSPLT 79

                          90       100
                  ....*....|....*....|
gi 1815992105  91 SAVSAIVINAGAYIAEIVRG 110
Cdd:TIGR01726  80 AAVIALTLFYGAYLAEIFRG 99
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
15-214 3.52e-24

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 95.90  E-value: 3.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  15 LFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILL------------ 82
Cdd:PRK11123    7 LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLLltlsdgftlnlg 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  83 -----------DVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLG 151
Cdd:PRK11123   87 fvqipvqmdieNFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1815992105 152 NQCIISLKDTSLFIVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERR 214
Cdd:PRK11123  167 NQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELR 229
artM PRK11122
arginine ABC transporter permease ArtM;
12-214 9.19e-23

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 91.56  E-value: 9.19e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  12 LPELFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYF---------AMPILL 82
Cdd:PRK11122    5 LPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYgpgqfpwlqEYPWLW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  83 DVRLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRdIIGPLAFRRLVPPLGNQCIISLKDTS 162
Cdd:PRK11122   85 HLLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKSTS 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1815992105 163 LFIVIGVAELTRQGQEVMASTFRAVeIWSTVAVLYLAMTLTMTLALRIIERR 214
Cdd:PRK11122  164 LAYTITLMDVMGYSQLLYGRTYDVM-VFGAAGIIYLVVNGLLTLLMRLIERK 214
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
15-214 3.01e-21

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 87.93  E-value: 3.01e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  15 LFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILLD----------V 84
Cdd:PRK15135    9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNsvtealgvgqI 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  85 RLDALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTSLF 164
Cdd:PRK15135   89 DIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALV 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1815992105 165 IVIGVAELTRQGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERR 214
Cdd:PRK15135  169 SLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLWLERR 218
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 7-217 9.81e-21

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 89.05  E-value: 9.81e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   7 VIPQALPElfAGARLTLYITVVGLLGGFAIGVVAgTARAYGNRAVNAIAMAYIELIRGTPIVVqvmFIYFAMPILLDV-- 84
Cdd:COG4597   176 YLPAPVFE--PGFGWVLAALLAAIVAAFVLRRWA-RRRQEATGQRFPVWWISLALLVGLPLLA---FLLLGAPLSLDYpe 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  85 ----------RLDA-LTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQ 153
Cdd:COG4597   250 lkgfnfrgglTLSPeFVALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQ 329

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1815992105 154 CIISLKDTSLFIVIGVAELTR-QGQEVMASTFRAVEIWSTVAVLYLAMTLTMTLALRIIERRMKI 217
Cdd:COG4597   330 YLNLTKNSSLAVAIGYPDLVSvFAGTTLNQTGQAIEIIAITMAVYLTISLLISLLMNWYNRRVAL 394
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 19-206 4.72e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.78  E-value: 4.72e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  19 ARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILLDVRLDALTSAVSAIV- 97
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILa 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  98 -INAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTSLFIVIGVAELTRQG 176
Cdd:cd06261    81 lLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1815992105 177 QEVMASTFRAVEIWSTVAVLYLAMTLTMTL 206
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 33-217 3.54e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.62  E-value: 3.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  33 GFAIGVVAGTARaygNRAVNAIAMAYIELIRGTPIVVQVMFIYfaMPILLDVRLDALTSAVSAIVINAGAYIAEIVRGAL 112
Cdd:pfam00528   1 GIPLGIIAALRR---GRRLDRLLRPLIDLLQALPSFVLAILLV--VIAILSILGHGILPAIILALLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105 113 LSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLVPPLGNQCIISLKDTSLFIVI----GVAELTRQGQEVMASTFrAVE 188
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPE-IQG 154

                         170       180
                  ....*....|....*....|....*....
gi 1815992105 189 IWSTVAVLYLAMTLTMTLALRIIERRMKI 217
Cdd:pfam00528 155 PVLAAALILLLLNLLVDILQRLLDPRVRK 183
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 13-142 1.04e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 50.92  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  13 PELFAGARLTLYITVVGLLGGFAIGVVAGTArAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPIlldvrldALTSA 92
Cdd:COG0600    57 GELWEHLLASLLRVLLGFALAALLGVPLGLL-LGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGI-------GEASK 128

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1815992105  93 VSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLA 142
Cdd:COG0600   129 IFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAA 178
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 15-138 1.44e-07

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 1.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  15 LFAGARLTLYITVVGLLGGFAIGVVAGTARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPilldvrlDALTSAVS 94
Cdd:COG1173    74 LLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLG-------PGLLNVIL 146

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1815992105  95 AIVINAGAYIAEIVRGALLSI-SRGYIEAGKALGITRWQ-LFRDII 138
Cdd:COG1173   147 ALGLTGWPGYARLVRAQVLSLrEREYVEAARALGASPLRiIFRHIL 192
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 8-138 1.63e-06

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 46.97  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105   8 IPQALPELFAGARLTLYITVVGLLGGFAIGVVAG-----TARA--YGNRAVNAIAMAYIELIRGTP-IVVQVMFIYFAmp 79
Cdd:COG2011     5 WSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGvllvlTRPGglLPNPVLYRVLGVIVNIFRSIPfIILLVALIPLT-- 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1815992105  80 illdvRLDALTS-----AVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDII 138
Cdd:COG2011    83 -----RLIVGTSigttaAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVL 141
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
15-147 2.75e-04

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 40.49  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  15 LFAGARLTLYITVVGLLGGFAIGVVAGT-------ARAYGNRAVNAIAMAYIELIRGTPIVVQVMFIYFAMPILLDVRLd 87
Cdd:PRK10782    9 LVRGVWETLAMTFVSGFFGFVIGLPVGVllyvtrpGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSI- 87

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1815992105  88 ALTSAVSAIVINAGAYIAEIVRGALLSISRGYIEAGKALGITRWQLFRDIIGPLAFRRLV 147
Cdd:PRK10782   88 GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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