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Conserved domains on  [gi|1811173428|ref|WP_162664988|]
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MULTISPECIES: hypothetical protein, partial [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
staph_coagu super family cl41543
staphylocoagulase; Past residue 485, the protein consists of a variable number of 27-amino ...
 9-36 1.33e-08

staphylocoagulase; Past residue 485, the protein consists of a variable number of 27-amino acid tandem repeats (see PF04022). This HMM omits coverage of a portion of the repetitive C-terminal region.


The actual alignment was detected with superfamily member NF035921:

Pssm-ID: 468263 [Multi-domain]  Cd Length: 520  Bit Score: 47.90  E-value: 1.33e-08
                          10        20
                  ....*....|....*....|....*...
gi 1811173428   9 NGQVSYGARPTYNKPSKTNAYNVTTHAD 36
Cdd:NF035921  493 DGTFGYEARPRFNKPSETNAYNVTTNQD 520
 
Name Accession Description Interval E-value
staph_coagu NF035921
staphylocoagulase; Past residue 485, the protein consists of a variable number of 27-amino ...
 9-36 1.33e-08

staphylocoagulase; Past residue 485, the protein consists of a variable number of 27-amino acid tandem repeats (see PF04022). This HMM omits coverage of a portion of the repetitive C-terminal region.


Pssm-ID: 468263 [Multi-domain]  Cd Length: 520  Bit Score: 47.90  E-value: 1.33e-08
                          10        20
                  ....*....|....*....|....*...
gi 1811173428   9 NGQVSYGARPTYNKPSKTNAYNVTTHAD 36
Cdd:NF035921  493 DGTFGYEARPRFNKPSETNAYNVTTNQD 520
Staphylcoagulse pfam04022
Staphylocoagulase repeat;
17-43 4.35e-06

Staphylocoagulase repeat;


Pssm-ID: 281951  Cd Length: 27  Bit Score: 37.85  E-value: 4.35e-06
                         10        20
                 ....*....|....*....|....*..
gi 1811173428 17 RPTYNKPSKTNAYNVTTHADGTATYGP 43
Cdd:pfam04022  1 RPRFKKPSETNAYNVTTHADGQASYGA 27
 
Name Accession Description Interval E-value
staph_coagu NF035921
staphylocoagulase; Past residue 485, the protein consists of a variable number of 27-amino ...
 9-36 1.33e-08

staphylocoagulase; Past residue 485, the protein consists of a variable number of 27-amino acid tandem repeats (see PF04022). This HMM omits coverage of a portion of the repetitive C-terminal region.


Pssm-ID: 468263 [Multi-domain]  Cd Length: 520  Bit Score: 47.90  E-value: 1.33e-08
                          10        20
                  ....*....|....*....|....*...
gi 1811173428   9 NGQVSYGARPTYNKPSKTNAYNVTTHAD 36
Cdd:NF035921  493 DGTFGYEARPRFNKPSETNAYNVTTNQD 520
Staphylcoagulse pfam04022
Staphylocoagulase repeat;
17-43 4.35e-06

Staphylocoagulase repeat;


Pssm-ID: 281951  Cd Length: 27  Bit Score: 37.85  E-value: 4.35e-06
                         10        20
                 ....*....|....*....|....*..
gi 1811173428 17 RPTYNKPSKTNAYNVTTHADGTATYGP 43
Cdd:pfam04022  1 RPRFKKPSETNAYNVTTHADGQASYGA 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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