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Conserved domains on  [gi|1803256191|ref|WP_161771415|]
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DUF1963 domain-containing protein, partial [Proteus sp. G4404]

Protein Classification

YwqG family protein( domain architecture ID 10218)

YwqG family protein is a DUF1963 domain-containing protein, similar to Bacillus subtilis YwqG

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1963 super family cl01600
Domain of unknown function (DUF1963); This domain is found in a set of hypothetical bacterial ...
 21-84 7.49e-05

Domain of unknown function (DUF1963); This domain is found in a set of hypothetical bacterial proteins. Its exact function has not, as yet, been described.


The actual alignment was detected with superfamily member pfam09234:

Pssm-ID: 470264  Cd Length: 178  Bit Score: 41.13  E-value: 7.49e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1803256191  21 IGGnKAYVSK---WPINPKGKELLHLFSIDCEKVTPqiaDGILPKTGYLSIF-STYDSNDYFLDEITY 84
Cdd:pfam09234   3 LGG-LPYLPKgfeWPRDEDGRPLSFLAQINLAELPP---LEDLPEKGILQFFiDDLDDDPYGLDFDPT 66
 
Name Accession Description Interval E-value
DUF1963 pfam09234
Domain of unknown function (DUF1963); This domain is found in a set of hypothetical bacterial ...
 21-84 7.49e-05

Domain of unknown function (DUF1963); This domain is found in a set of hypothetical bacterial proteins. Its exact function has not, as yet, been described.


Pssm-ID: 430475  Cd Length: 178  Bit Score: 41.13  E-value: 7.49e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1803256191  21 IGGnKAYVSK---WPINPKGKELLHLFSIDCEKVTPqiaDGILPKTGYLSIF-STYDSNDYFLDEITY 84
Cdd:pfam09234   3 LGG-LPYLPKgfeWPRDEDGRPLSFLAQINLAELPP---LEDLPEKGILQFFiDDLDDDPYGLDFDPT 66
YwqG COG3878
Uncharacterized conserved protein YwqG, DUF1963 family [Function unknown];
21-76 7.82e-03

Uncharacterized conserved protein YwqG, DUF1963 family [Function unknown];


Pssm-ID: 443086  Cd Length: 241  Bit Score: 35.73  E-value: 7.82e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1803256191  21 IGGnKAYVSK---WPINPKGKELLHLFSIDCEKVTPqiaDGILPKTGYLSIFstYDSND 76
Cdd:COG3878    32 FGG-VPYLPKgmeWPTDSDGQPLSFLAQINFAELPP---LDGLPATGILQFF--IDLDD 84
 
Name Accession Description Interval E-value
DUF1963 pfam09234
Domain of unknown function (DUF1963); This domain is found in a set of hypothetical bacterial ...
 21-84 7.49e-05

Domain of unknown function (DUF1963); This domain is found in a set of hypothetical bacterial proteins. Its exact function has not, as yet, been described.


Pssm-ID: 430475  Cd Length: 178  Bit Score: 41.13  E-value: 7.49e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1803256191  21 IGGnKAYVSK---WPINPKGKELLHLFSIDCEKVTPqiaDGILPKTGYLSIF-STYDSNDYFLDEITY 84
Cdd:pfam09234   3 LGG-LPYLPKgfeWPRDEDGRPLSFLAQINLAELPP---LEDLPEKGILQFFiDDLDDDPYGLDFDPT 66
YwqG COG3878
Uncharacterized conserved protein YwqG, DUF1963 family [Function unknown];
21-76 7.82e-03

Uncharacterized conserved protein YwqG, DUF1963 family [Function unknown];


Pssm-ID: 443086  Cd Length: 241  Bit Score: 35.73  E-value: 7.82e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1803256191  21 IGGnKAYVSK---WPINPKGKELLHLFSIDCEKVTPqiaDGILPKTGYLSIFstYDSND 76
Cdd:COG3878    32 FGG-VPYLPKgmeWPTDSDGQPLSFLAQINFAELPP---LDGLPATGILQFF--IDLDD 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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