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Conserved domains on  [gi|1790958753|ref|WP_158553680|]
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RodZ family helix-turn-helix domain-containing protein [Eubacterium sp. AF22-8LB]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 11444431)

helix-turn-helix (HTH) domain-containing protein with an XRE (Xenobiotic Response Element) family HTH domain, binds DNA and may function as a transcriptional regulator

CATH:  1.10.10.10
Gene Ontology:  GO:0003677
PubMed:  15808743|2644244|8831795
SCOP:  4000362

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 6-68 7.88e-13

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 62.90  E-value: 7.88e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1790958753   6 ILKERRTNLKLSIQDVSNQTRLAPQYIQAIEENNLDVFSDDLsFVRYFVHAYSDAIGVNWQAI 68
Cdd:COG1426     9 LLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPV-YVRGFLRSYARALGLDPEEL 70
 
Name Accession Description Interval E-value
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 6-68 7.88e-13

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 62.90  E-value: 7.88e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1790958753   6 ILKERRTNLKLSIQDVSNQTRLAPQYIQAIEENNLDVFSDDLsFVRYFVHAYSDAIGVNWQAI 68
Cdd:COG1426     9 LLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPV-YVRGFLRSYARALGLDPEEL 70
HTH_25 pfam13413
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 6-68 3.98e-12

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433187 [Multi-domain]  Cd Length: 62  Bit Score: 60.59  E-value: 3.98e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1790958753   6 ILKERRTNLKLSIQDVSNQTRLAPQYIQAIEENNLDVFSDDLsFVRYFVHAYSDAIGVNWQAI 68
Cdd:pfam13413   1 RLRAAREARGLSLEDVAERTKIRPRYLEALEEDDFDALPEPV-YARGFLRSYARALGLDPEEL 62
 
Name Accession Description Interval E-value
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 6-68 7.88e-13

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 62.90  E-value: 7.88e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1790958753   6 ILKERRTNLKLSIQDVSNQTRLAPQYIQAIEENNLDVFSDDLsFVRYFVHAYSDAIGVNWQAI 68
Cdd:COG1426     9 LLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPV-YVRGFLRSYARALGLDPEEL 70
HTH_25 pfam13413
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 6-68 3.98e-12

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433187 [Multi-domain]  Cd Length: 62  Bit Score: 60.59  E-value: 3.98e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1790958753   6 ILKERRTNLKLSIQDVSNQTRLAPQYIQAIEENNLDVFSDDLsFVRYFVHAYSDAIGVNWQAI 68
Cdd:pfam13413   1 RLRAAREARGLSLEDVAERTKIRPRYLEALEEDDFDALPEPV-YARGFLRSYARALGLDPEEL 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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