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Conserved domains on  [gi|1784139026|ref|WP_156925517|]
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hypothetical protein [Thioalkalivibrio paradoxus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EACC1 super family cl45339
Effector Associated Constant Component 1; Effector Associated Constant Component 1 (EACC1) is ...
 41-106 3.11e-06

Effector Associated Constant Component 1; Effector Associated Constant Component 1 (EACC1) is a component of a membrane-associated two-gene conflict system, a class of NTP-dependent biological conflict systems. It is found either a standalone domain or fused to EAD1 or EAD2. It is comprised of a single conserved TM helix with short, N- and C-terminal extensions. Predicted to insert into the membrane and protrude beyond both the outer and inner layers of the bilayer.


The actual alignment was detected with superfamily member pfam19953:

Pssm-ID: 437785  Cd Length: 107  Bit Score: 42.65  E-value: 3.11e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784139026  41 EGPMAAGF-LVEVSLVGGW--GVLAVALLAWMKAKLGRY-IKVTKPDGTVIELKGYSTDDAAALLKSAQE 106
Cdd:pfam19953  36 PGEMGGALdVLVVALGSGGaaAALARSLAAWLRSRRSDVtVTVTRPDGRSVELDADRVLDPEEVLRLLRA 105
 
Name Accession Description Interval E-value
EACC1 pfam19953
Effector Associated Constant Component 1; Effector Associated Constant Component 1 (EACC1) is ...
 41-106 3.11e-06

Effector Associated Constant Component 1; Effector Associated Constant Component 1 (EACC1) is a component of a membrane-associated two-gene conflict system, a class of NTP-dependent biological conflict systems. It is found either a standalone domain or fused to EAD1 or EAD2. It is comprised of a single conserved TM helix with short, N- and C-terminal extensions. Predicted to insert into the membrane and protrude beyond both the outer and inner layers of the bilayer.


Pssm-ID: 437785  Cd Length: 107  Bit Score: 42.65  E-value: 3.11e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784139026  41 EGPMAAGF-LVEVSLVGGW--GVLAVALLAWMKAKLGRY-IKVTKPDGTVIELKGYSTDDAAALLKSAQE 106
Cdd:pfam19953  36 PGEMGGALdVLVVALGSGGaaAALARSLAAWLRSRRSDVtVTVTRPDGRSVELDADRVLDPEEVLRLLRA 105
 
Name Accession Description Interval E-value
EACC1 pfam19953
Effector Associated Constant Component 1; Effector Associated Constant Component 1 (EACC1) is ...
 41-106 3.11e-06

Effector Associated Constant Component 1; Effector Associated Constant Component 1 (EACC1) is a component of a membrane-associated two-gene conflict system, a class of NTP-dependent biological conflict systems. It is found either a standalone domain or fused to EAD1 or EAD2. It is comprised of a single conserved TM helix with short, N- and C-terminal extensions. Predicted to insert into the membrane and protrude beyond both the outer and inner layers of the bilayer.


Pssm-ID: 437785  Cd Length: 107  Bit Score: 42.65  E-value: 3.11e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784139026  41 EGPMAAGF-LVEVSLVGGW--GVLAVALLAWMKAKLGRY-IKVTKPDGTVIELKGYSTDDAAALLKSAQE 106
Cdd:pfam19953  36 PGEMGGALdVLVVALGSGGaaAALARSLAAWLRSRRSDVtVTVTRPDGRSVELDADRVLDPEEVLRLLRA 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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