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Conserved domains on  [gi|1767352586|ref|WP_152028203|]
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transposase [Pseudomonas bharatica]

Protein Classification

IS66 family transposase( domain architecture ID 581058)

IS66 family transposase binds to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0004803|GO:0032196|GO:0003677
PubMed:  20615441|17165262|20079432

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_IS66 super family cl24150
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ...
 32-98 1.95e-06

Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.


The actual alignment was detected with superfamily member pfam03050:

Pssm-ID: 427113 [Multi-domain]  Cd Length: 281  Bit Score: 44.93  E-value: 1.95e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1767352586  32 VSRALRRG---LEPLVDRLRALLLQRQVLHADETPSAATRSRRGENQTplylSLLWAYRSND-------LEPSDSRG 98
Cdd:pfam03050  42 LANWVGRAaelLEPLVDALRAALLESPVIHADETPLRVLKPGRGKGKK----GWLWVYVTDDrpppavlFHYHPSRG 114
 
Name Accession Description Interval E-value
DDE_Tnp_IS66 pfam03050
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ...
 32-98 1.95e-06

Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.


Pssm-ID: 427113 [Multi-domain]  Cd Length: 281  Bit Score: 44.93  E-value: 1.95e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1767352586  32 VSRALRRG---LEPLVDRLRALLLQRQVLHADETPSAATRSRRGENQTplylSLLWAYRSND-------LEPSDSRG 98
Cdd:pfam03050  42 LANWVGRAaelLEPLVDALRAALLESPVIHADETPLRVLKPGRGKGKK----GWLWVYVTDDrpppavlFHYHPSRG 114
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
 30-98 5.56e-05

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 41.03  E-value: 5.56e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1767352586  30 RRVSRALrrglEPLVDRLRALLLQRQVLHADETPSAATRSRRGENqtplylSLLWAYRSND----LEPSDSRG 98
Cdd:NF033517  131 GRAAELL----EPLYDALKEELLAAPVLHADETGVPVLEPGRGKT------GWLWVYASAPpavlFDYAPSRG 193
 
Name Accession Description Interval E-value
DDE_Tnp_IS66 pfam03050
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ...
 32-98 1.95e-06

Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.


Pssm-ID: 427113 [Multi-domain]  Cd Length: 281  Bit Score: 44.93  E-value: 1.95e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1767352586  32 VSRALRRG---LEPLVDRLRALLLQRQVLHADETPSAATRSRRGENQTplylSLLWAYRSND-------LEPSDSRG 98
Cdd:pfam03050  42 LANWVGRAaelLEPLVDALRAALLESPVIHADETPLRVLKPGRGKGKK----GWLWVYVTDDrpppavlFHYHPSRG 114
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
 30-98 5.56e-05

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 41.03  E-value: 5.56e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1767352586  30 RRVSRALrrglEPLVDRLRALLLQRQVLHADETPSAATRSRRGENqtplylSLLWAYRSND----LEPSDSRG 98
Cdd:NF033517  131 GRAAELL----EPLYDALKEELLAAPVLHADETGVPVLEPGRGKT------GWLWVYASAPpavlFDYAPSRG 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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