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Conserved domains on  [gi|1720949620|ref|WP_146090402|]
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type IV secretion system protein, partial [Xanthomonas cucurbitae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VirB6 super family cl43935
Type IV secretory pathway, VirB6 component [Intracellular trafficking, secretion, and ...
 1-50 1.45e-06

Type IV secretory pathway, VirB6 component [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG3704:

Pssm-ID: 442918  Cd Length: 300  Bit Score: 44.32  E-value: 1.45e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1720949620   1 AFLIGIGPIFILALIFDQTKDLFKKWLFYLLGTLFSMAMLSVVTAMVLKF 50
Cdd:COG3704   170 ALLLGLGPIFIAFLLFEATRRLFDGWLKQLLNYALQPVLVAAVLALLLAL 219
 
Name Accession Description Interval E-value
VirB6 COG3704
Type IV secretory pathway, VirB6 component [Intracellular trafficking, secretion, and ...
 1-50 1.45e-06

Type IV secretory pathway, VirB6 component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442918  Cd Length: 300  Bit Score: 44.32  E-value: 1.45e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1720949620   1 AFLIGIGPIFILALIFDQTKDLFKKWLFYLLGTLFSMAMLSVVTAMVLKF 50
Cdd:COG3704   170 ALLLGLGPIFIAFLLFEATRRLFDGWLKQLLNYALQPVLVAAVLALLLAL 219
TrbL pfam04610
TrbL/VirB6 plasmid conjugal transfer protein;
1-93 4.76e-04

TrbL/VirB6 plasmid conjugal transfer protein;


Pssm-ID: 377390  Cd Length: 214  Bit Score: 37.17  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720949620   1 AFLIGIGPIFILALIFDQTKDLFKKWLFYLLGTLFSMAMLSVVTAMVLKFTAKVAAAYWaaqlftlGNAEGLSSQALQQG 80
Cdd:pfam04610 129 ALLLALGPIFIPFLLFKATRDFFENWLGQVLSYALKLLLLAVIVGIGSGIFDSYLAALG-------ADAASLLSQAAALL 201

                          90
                  ....*....|...
gi 1720949620  81 GIGLFMTVLIITV 93
Cdd:pfam04610 202 LAALVLLGLVIQV 214
 
Name Accession Description Interval E-value
VirB6 COG3704
Type IV secretory pathway, VirB6 component [Intracellular trafficking, secretion, and ...
 1-50 1.45e-06

Type IV secretory pathway, VirB6 component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442918  Cd Length: 300  Bit Score: 44.32  E-value: 1.45e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1720949620   1 AFLIGIGPIFILALIFDQTKDLFKKWLFYLLGTLFSMAMLSVVTAMVLKF 50
Cdd:COG3704   170 ALLLGLGPIFIAFLLFEATRRLFDGWLKQLLNYALQPVLVAAVLALLLAL 219
TrbL pfam04610
TrbL/VirB6 plasmid conjugal transfer protein;
1-93 4.76e-04

TrbL/VirB6 plasmid conjugal transfer protein;


Pssm-ID: 377390  Cd Length: 214  Bit Score: 37.17  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720949620   1 AFLIGIGPIFILALIFDQTKDLFKKWLFYLLGTLFSMAMLSVVTAMVLKFTAKVAAAYWaaqlftlGNAEGLSSQALQQG 80
Cdd:pfam04610 129 ALLLALGPIFIPFLLFKATRDFFENWLGQVLSYALKLLLLAVIVGIGSGIFDSYLAALG-------ADAASLLSQAAALL 201

                          90
                  ....*....|...
gi 1720949620  81 GIGLFMTVLIITV 93
Cdd:pfam04610 202 LAALVLLGLVIQV 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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