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Conserved domains on  [gi|1717235477|ref|WP_144413447|]
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anti-sigma factor [Corynebacterium epidermidicanis]

Protein Classification

anti-sigma factor family protein( domain architecture ID 11475862)

anti-sigma factor family protein may contain an N-terminal zinc-finger domain and belong to the zinc-associated anti-sigma factor (ZAS) family such as Bacillus subtilis anti-sigma-W factor RsiW and Mycobacterium tuberculosis anti-sigma-L factor RslA

Gene Ontology:  GO:0046872|GO:0016020
PubMed:  28319136

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
50-110 1.06e-06

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


:

Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 45.61  E-value: 1.06e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1717235477  50 EAIAGYVDNELPTIAMNRARVHLVHCAECRAEVLAQRRASERLRKSAAEELSAPSSLLDKL 110
Cdd:COG5662     8 ELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAALAPDEPVPARLRARV 68
 
Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
50-110 1.06e-06

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 45.61  E-value: 1.06e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1717235477  50 EAIAGYVDNELPTIAMNRARVHLVHCAECRAEVLAQRRASERLRKSAAEELSAPSSLLDKL 110
Cdd:COG5662     8 ELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAALAPDEPVPARLRARV 68
 
Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
50-110 1.06e-06

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 45.61  E-value: 1.06e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1717235477  50 EAIAGYVDNELPTIAMNRARVHLVHCAECRAEVLAQRRASERLRKSAAEELSAPSSLLDKL 110
Cdd:COG5662     8 ELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAALAPDEPVPARLRARV 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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