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Conserved domains on  [gi|1716908463|ref|WP_144190418|]
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hypothetical protein [Gilliamella apicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EF_0829 super family cl18005
PRD domain protein EF_0829/AHA_3910; Members of this family of relatively uncommon proteins ...
 11-101 1.89e-20

PRD domain protein EF_0829/AHA_3910; Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General]


The actual alignment was detected with superfamily member TIGR03582:

Pssm-ID: 132621 [Multi-domain]  Cd Length: 107  Bit Score: 80.60  E-value: 1.89e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1716908463  11 IEDDLDPEVVTaQTIEIINRWLTDYQITQNDVQKAMLLSHVKAMVERAKTLEKLPEVDPSLFDELSEQSLMLARKTVQLF 90
Cdd:TIGR03582   8 IRKSENPELLV-QVIQQTENLLREEHIVPTEVQKQMLISHLNAMVYRSTTGETLPEVDRSLFDEISKESIKLAEEVVAAL 86

                          90
                  ....*....|.
gi 1716908463  91 NRLSNKIAHVI 101
Cdd:TIGR03582  87 GNLAEDEAYLL 97
 
Name Accession Description Interval E-value
EF_0829 TIGR03582
PRD domain protein EF_0829/AHA_3910; Members of this family of relatively uncommon proteins ...
 11-101 1.89e-20

PRD domain protein EF_0829/AHA_3910; Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General]


Pssm-ID: 132621 [Multi-domain]  Cd Length: 107  Bit Score: 80.60  E-value: 1.89e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1716908463  11 IEDDLDPEVVTaQTIEIINRWLTDYQITQNDVQKAMLLSHVKAMVERAKTLEKLPEVDPSLFDELSEQSLMLARKTVQLF 90
Cdd:TIGR03582   8 IRKSENPELLV-QVIQQTENLLREEHIVPTEVQKQMLISHLNAMVYRSTTGETLPEVDRSLFDEISKESIKLAEEVVAAL 86

                          90
                  ....*....|.
gi 1716908463  91 NRLSNKIAHVI 101
Cdd:TIGR03582  87 GNLAEDEAYLL 97
 
Name Accession Description Interval E-value
EF_0829 TIGR03582
PRD domain protein EF_0829/AHA_3910; Members of this family of relatively uncommon proteins ...
 11-101 1.89e-20

PRD domain protein EF_0829/AHA_3910; Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General]


Pssm-ID: 132621 [Multi-domain]  Cd Length: 107  Bit Score: 80.60  E-value: 1.89e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1716908463  11 IEDDLDPEVVTaQTIEIINRWLTDYQITQNDVQKAMLLSHVKAMVERAKTLEKLPEVDPSLFDELSEQSLMLARKTVQLF 90
Cdd:TIGR03582   8 IRKSENPELLV-QVIQQTENLLREEHIVPTEVQKQMLISHLNAMVYRSTTGETLPEVDRSLFDEISKESIKLAEEVVAAL 86

                          90
                  ....*....|.
gi 1716908463  91 NRLSNKIAHVI 101
Cdd:TIGR03582  87 GNLAEDEAYLL 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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