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Conserved domains on  [gi|1701559794|ref|WP_142106026|]
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MULTISPECIES: DUF5983 family protein [Serratia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5983 super family cl44841
Family of unknown function (DUF5983); This family of proteins are likely to be phage derived.
 13-100 1.55e-17

Family of unknown function (DUF5983); This family of proteins are likely to be phage derived.


The actual alignment was detected with superfamily member pfam19419:

Pssm-ID: 437251  Cd Length: 162  Bit Score: 72.61  E-value: 1.55e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1701559794  13 CSTAHMTFADNEVLGLIAKEKYN-----WIMEYEYGFVIDLWGYRYIVLRLKALGLSKAFRKFVYSMILKHDLNMIQFDA 87
Cdd:pfam19419  70 CSTAHITEADNALLHTLSHQYQDfgeseWVHYTGSGYLLRLDAWSFPVLRLKRLGLSKACRRLVVTLIRRYAVSTIHLDA 149

                          90
                  ....*....|...
gi 1701559794  88 DGDTIDEMPTYYW 100
Cdd:pfam19419 150 FGEILPGFTTFDW 162
 
Name Accession Description Interval E-value
DUF5983 pfam19419
Family of unknown function (DUF5983); This family of proteins are likely to be phage derived.
 13-100 1.55e-17

Family of unknown function (DUF5983); This family of proteins are likely to be phage derived.


Pssm-ID: 437251  Cd Length: 162  Bit Score: 72.61  E-value: 1.55e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1701559794  13 CSTAHMTFADNEVLGLIAKEKYN-----WIMEYEYGFVIDLWGYRYIVLRLKALGLSKAFRKFVYSMILKHDLNMIQFDA 87
Cdd:pfam19419  70 CSTAHITEADNALLHTLSHQYQDfgeseWVHYTGSGYLLRLDAWSFPVLRLKRLGLSKACRRLVVTLIRRYAVSTIHLDA 149

                          90
                  ....*....|...
gi 1701559794  88 DGDTIDEMPTYYW 100
Cdd:pfam19419 150 FGEILPGFTTFDW 162
 
Name Accession Description Interval E-value
DUF5983 pfam19419
Family of unknown function (DUF5983); This family of proteins are likely to be phage derived.
 13-100 1.55e-17

Family of unknown function (DUF5983); This family of proteins are likely to be phage derived.


Pssm-ID: 437251  Cd Length: 162  Bit Score: 72.61  E-value: 1.55e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1701559794  13 CSTAHMTFADNEVLGLIAKEKYN-----WIMEYEYGFVIDLWGYRYIVLRLKALGLSKAFRKFVYSMILKHDLNMIQFDA 87
Cdd:pfam19419  70 CSTAHITEADNALLHTLSHQYQDfgeseWVHYTGSGYLLRLDAWSFPVLRLKRLGLSKACRRLVVTLIRRYAVSTIHLDA 149

                          90
                  ....*....|...
gi 1701559794  88 DGDTIDEMPTYYW 100
Cdd:pfam19419 150 FGEILPGFTTFDW 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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