NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1690767244|ref|WP_139518766|]
View 

phage minor tail protein L, partial [Escherichia coli]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_tail_L super family cl01908
Phage minor tail protein L;
11-70 1.43e-31

Phage minor tail protein L;


The actual alignment was detected with superfamily member TIGR01600:

Pssm-ID: 470392  Cd Length: 225  Bit Score: 108.87  E-value: 1.43e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690767244  11 ESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNEKGEPVTWQGRQYQAYPIDGSGFEMSG 70
Cdd:TIGR01600   1 DIQKLEPSALVELFELDLTAQGGERLFFHNELNEKGEAVTWQGRQYQPWPIDASGFEMTG 60
 
Name Accession Description Interval E-value
phage_tail_L TIGR01600
lambda-like phage minor tail protein L; This model detects members of the family of phage ...
 11-70 1.43e-31

lambda-like phage minor tail protein L; This model detects members of the family of phage lambda minor tail protein L. This model was built as a fragment model to allow detection of fragmentary sequences, as might be found in cryptic prophage regions. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130661  Cd Length: 225  Bit Score: 108.87  E-value: 1.43e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690767244  11 ESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNEKGEPVTWQGRQYQAYPIDGSGFEMSG 70
Cdd:TIGR01600   1 DIQKLEPSALVELFELDLTAQGGERLFFHNELNEKGEAVTWQGRQYQPWPIDASGFEMTG 60
gp18 COG4672
Phage tail protein [Mobilome: prophages, transposons];
7-70 1.75e-28

Phage tail protein [Mobilome: prophages, transposons];


Pssm-ID: 443709  Cd Length: 233  Bit Score: 101.14  E-value: 1.75e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1690767244   7 ESLNESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNEKGEPVTWQGRQYQAYPIDGSGFEMSG 70
Cdd:COG4672     2 MITADLQKLEPGALVRLFEVDGTAFGGDVLRFHAGTNEKAKSIWWQGNEYDAWPIQAEGFELSG 65
Phage_tail_L pfam05100
Phage minor tail protein L;
29-70 3.24e-20

Phage minor tail protein L;


Pssm-ID: 282895  Cd Length: 206  Bit Score: 79.10  E-value: 3.24e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1690767244  29 TVQGGERYFFCNELNEKGEPVTWQGRQYQAYPIDGSGFEMSG 70
Cdd:pfam05100   1 TAFGGERLFFHAETNEKGEPITWQGRQYEPWPIQASGFEKTG 42
 
Name Accession Description Interval E-value
phage_tail_L TIGR01600
lambda-like phage minor tail protein L; This model detects members of the family of phage ...
 11-70 1.43e-31

lambda-like phage minor tail protein L; This model detects members of the family of phage lambda minor tail protein L. This model was built as a fragment model to allow detection of fragmentary sequences, as might be found in cryptic prophage regions. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130661  Cd Length: 225  Bit Score: 108.87  E-value: 1.43e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690767244  11 ESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNEKGEPVTWQGRQYQAYPIDGSGFEMSG 70
Cdd:TIGR01600   1 DIQKLEPSALVELFELDLTAQGGERLFFHNELNEKGEAVTWQGRQYQPWPIDASGFEMTG 60
gp18 COG4672
Phage tail protein [Mobilome: prophages, transposons];
7-70 1.75e-28

Phage tail protein [Mobilome: prophages, transposons];


Pssm-ID: 443709  Cd Length: 233  Bit Score: 101.14  E-value: 1.75e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1690767244   7 ESLNESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNEKGEPVTWQGRQYQAYPIDGSGFEMSG 70
Cdd:COG4672     2 MITADLQKLEPGALVRLFEVDGTAFGGDVLRFHAGTNEKAKSIWWQGNEYDAWPIQAEGFELSG 65
Phage_tail_L pfam05100
Phage minor tail protein L;
29-70 3.24e-20

Phage minor tail protein L;


Pssm-ID: 282895  Cd Length: 206  Bit Score: 79.10  E-value: 3.24e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1690767244  29 TVQGGERYFFCNELNEKGEPVTWQGRQYQAYPIDGSGFEMSG 70
Cdd:pfam05100   1 TAFGGERLFFHAETNEKGEPITWQGRQYEPWPIQASGFEKTG 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH