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Conserved domains on  [gi|1606855284|ref|WP_134954091|]
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MULTISPECIES: three component ABC system middle component [Serratia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MC3 super family cl45504
ABC-three component (ABC-3C) system Middle Component 3; Middle Components (MCs) of the ABC-3C ...
 6-165 9.23e-34

ABC-three component (ABC-3C) system Middle Component 3; Middle Components (MCs) of the ABC-3C biological conflict systems occupy the central position between the catalytic effector and ABC ATPases of the systems. MCs are defined by distinctive patterns of conserved charged residues. As some MCs are HTH domains, they are predicted to function akin to kleisins as DNA-binding partners for the ABC ATPases, assisting in recognition and responding to invasive elements such as DNA viruses.


The actual alignment was detected with superfamily member pfam20131:

Pssm-ID: 466298  Cd Length: 159  Bit Score: 116.57  E-value: 9.23e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606855284   6 EKLTREEFNLNNSFYCGYLIYKALEAQRKINDKGLECSVIYLILPMVMTKSITETLPATIRTSFYTWFMDNQWISINLAD 85
Cdd:pfam20131   2 SERPAEEALLFNPAFCGLILWSFYKGYQEKEKRPMPFLLAFLVLPLVLHKDTRDKLPTNSRSSLLSWLQKNRELLVDLQE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606855284  86 RINSYIDISNSALKLLLDFNVITLDGNGCFLLNPSVNLKEPTLFQSSIHvplQVKATRFFSKWFS-ENSPASIYTVLGIK 164
Cdd:pfam20131  82 RARELRPLTLEAIQFLLQNDLITIDEDGLLLPLPKRPKKTKSITDEVKE---CLKAAEKLGRWFSrAGTVVTIYTTLGVK 158


                  .
gi 1606855284 165 P 165
Cdd:pfam20131 159 P 159
 
Name Accession Description Interval E-value
MC3 pfam20131
ABC-three component (ABC-3C) system Middle Component 3; Middle Components (MCs) of the ABC-3C ...
 6-165 9.23e-34

ABC-three component (ABC-3C) system Middle Component 3; Middle Components (MCs) of the ABC-3C biological conflict systems occupy the central position between the catalytic effector and ABC ATPases of the systems. MCs are defined by distinctive patterns of conserved charged residues. As some MCs are HTH domains, they are predicted to function akin to kleisins as DNA-binding partners for the ABC ATPases, assisting in recognition and responding to invasive elements such as DNA viruses.


Pssm-ID: 466298  Cd Length: 159  Bit Score: 116.57  E-value: 9.23e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606855284   6 EKLTREEFNLNNSFYCGYLIYKALEAQRKINDKGLECSVIYLILPMVMTKSITETLPATIRTSFYTWFMDNQWISINLAD 85
Cdd:pfam20131   2 SERPAEEALLFNPAFCGLILWSFYKGYQEKEKRPMPFLLAFLVLPLVLHKDTRDKLPTNSRSSLLSWLQKNRELLVDLQE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606855284  86 RINSYIDISNSALKLLLDFNVITLDGNGCFLLNPSVNLKEPTLFQSSIHvplQVKATRFFSKWFS-ENSPASIYTVLGIK 164
Cdd:pfam20131  82 RARELRPLTLEAIQFLLQNDLITIDEDGLLLPLPKRPKKTKSITDEVKE---CLKAAEKLGRWFSrAGTVVTIYTTLGVK 158


                  .
gi 1606855284 165 P 165
Cdd:pfam20131 159 P 159
 
Name Accession Description Interval E-value
MC3 pfam20131
ABC-three component (ABC-3C) system Middle Component 3; Middle Components (MCs) of the ABC-3C ...
 6-165 9.23e-34

ABC-three component (ABC-3C) system Middle Component 3; Middle Components (MCs) of the ABC-3C biological conflict systems occupy the central position between the catalytic effector and ABC ATPases of the systems. MCs are defined by distinctive patterns of conserved charged residues. As some MCs are HTH domains, they are predicted to function akin to kleisins as DNA-binding partners for the ABC ATPases, assisting in recognition and responding to invasive elements such as DNA viruses.


Pssm-ID: 466298  Cd Length: 159  Bit Score: 116.57  E-value: 9.23e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606855284   6 EKLTREEFNLNNSFYCGYLIYKALEAQRKINDKGLECSVIYLILPMVMTKSITETLPATIRTSFYTWFMDNQWISINLAD 85
Cdd:pfam20131   2 SERPAEEALLFNPAFCGLILWSFYKGYQEKEKRPMPFLLAFLVLPLVLHKDTRDKLPTNSRSSLLSWLQKNRELLVDLQE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606855284  86 RINSYIDISNSALKLLLDFNVITLDGNGCFLLNPSVNLKEPTLFQSSIHvplQVKATRFFSKWFS-ENSPASIYTVLGIK 164
Cdd:pfam20131  82 RARELRPLTLEAIQFLLQNDLITIDEDGLLLPLPKRPKKTKSITDEVKE---CLKAAEKLGRWFSrAGTVVTIYTTLGVK 158


                  .
gi 1606855284 165 P 165
Cdd:pfam20131 159 P 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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