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Conserved domains on  [gi|1590762426|ref|WP_131753222|]
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outer membrane protein [Legionella feeleii]

Protein Classification

outer membrane protein( domain architecture ID 10007631)

outer membrane protein containing beta-barrel domain, such as Salmonella enterica outer membrane protein PagN, an adhesin and invasin, that mediates invasion via interaction with proteoglycan

CATH:  2.40.160.10
Gene Ontology:  GO:0009279
PubMed:  1846140|31792365|31214985|19552707

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LomR COG3637
Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];
111-223 1.39e-05

Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442854 [Multi-domain]  Cd Length: 154  Bit Score: 43.81  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590762426 111 WTDADPEFNNHAYHYKIQHaqVSLKGKILTEMAHDLLPWVSGSIGVGINKSSSFNnislvcgelPNPNYTSETKSTLTYA 190
Cdd:COG3637    34 YSDIDGDSSGTTGSGDLDY--LSLRARAGYDFNDRFLPYATAGVAYARVKVTGNT---------GSGTSGSDSDTRFGWT 102

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1590762426 191 FGAGLQKALNQHVQVGIGYEFSDWGKSQLGAAP 223
Cdd:COG3637   103 VGAGVEYALTDNWSLRLEYRYTDLGDADFDGGG 135
 
Name Accession Description Interval E-value
LomR COG3637
Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];
111-223 1.39e-05

Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442854 [Multi-domain]  Cd Length: 154  Bit Score: 43.81  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590762426 111 WTDADPEFNNHAYHYKIQHaqVSLKGKILTEMAHDLLPWVSGSIGVGINKSSSFNnislvcgelPNPNYTSETKSTLTYA 190
Cdd:COG3637    34 YSDIDGDSSGTTGSGDLDY--LSLRARAGYDFNDRFLPYATAGVAYARVKVTGNT---------GSGTSGSDSDTRFGWT 102

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1590762426 191 FGAGLQKALNQHVQVGIGYEFSDWGKSQLGAAP 223
Cdd:COG3637   103 VGAGVEYALTDNWSLRLEYRYTDLGDADFDGGG 135
 
Name Accession Description Interval E-value
LomR COG3637
Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];
111-223 1.39e-05

Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442854 [Multi-domain]  Cd Length: 154  Bit Score: 43.81  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1590762426 111 WTDADPEFNNHAYHYKIQHaqVSLKGKILTEMAHDLLPWVSGSIGVGINKSSSFNnislvcgelPNPNYTSETKSTLTYA 190
Cdd:COG3637    34 YSDIDGDSSGTTGSGDLDY--LSLRARAGYDFNDRFLPYATAGVAYARVKVTGNT---------GSGTSGSDSDTRFGWT 102

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1590762426 191 FGAGLQKALNQHVQVGIGYEFSDWGKSQLGAAP 223
Cdd:COG3637   103 VGAGVEYALTDNWSLRLEYRYTDLGDADFDGGG 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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