|
Name |
Accession |
Description |
Interval |
E-value |
| dnaE2 |
PRK05672 |
error-prone DNA polymerase; Validated |
1-1038 |
0e+00 |
|
error-prone DNA polymerase; Validated
Pssm-ID: 235553 [Multi-domain] Cd Length: 1046 Bit Score: 1417.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 1 MRYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQ-----DGMSI 75
Cdd:PRK05672 3 PPYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGpdpdpGGPHL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 76 LVYPTDRGAYSRLTRLLTLGKGRGGKANCVLSLDDVALYSEGLLGIL------------VPDLADENCAVQFRKMAEIFG 143
Cdd:PRK05672 83 LVLARDREGYGRLSRLITRARLRAGKGEYRLDLDDLAEPAGGHWAILtgcrkgfvilalPYGGDAAALAALAALLDAFFA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 144 DRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHADRYLKPP 223
Cdd:PRK05672 163 DRVWLELTLHGRPDDDRRNARLAALAARAGVPLVATGDVHMHHRSRRRLQDAMTAIRARRSLAEAGGWLAPNGERHLRSG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 224 QEMERLFPRYPEALARTMEIVERCRFSLEELTYQYPEEAILPDKSPQESLEHYVWECVPSRYPEGLPPEVLRIVRHELDL 303
Cdd:PRK05672 243 AEMARLFPDYPEALAETVELAERCAFDLDLLAYEYPDEPVPAGHTPASWLRQLTEAGAARRYGPGIPPKARAQIEHELAL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 304 IRTMKYAPYFLTVFSIVRFARSQDILCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERRE 383
Cdd:PRK05672 323 IAELGYEGYFLTVHDIVRFARSQGILCQGRGSAANSAVCYALGITEVDPVQSGLLFERFLSPERDEPPDIDVDFEHDRRE 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 384 EVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWAWSEELVSDRSLRDQGLNPEDRRLALTL 463
Cdd:PRK05672 403 EVIQYVYRRYGRDRAAQVANVITYRPRSAVRDVAKALGLSPGQVDAWAKQVSRWSGSADDLQRLRQAGLDPESPIPRRVV 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 464 KLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKAFALIEEH 543
Cdd:PRK05672 483 ELAAQLIGFPRHLSQHSGGFVICDRPLARLVPVENAAMEGRSVIQWDKDDCAAVGLVKVDVLALGMLSALHRAFDLIAEH 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 544 KDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKE 623
Cdd:PRK05672 563 RGRRLTLASIPLDDPAVYDMLCRADSVGVFQVESRAQMAMLPRLRPRTFYDLVVEVAIVRPGPIQGGMVHPYLRRRNGQE 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 624 PVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFTGGVSRFKDKLVSGMIRNCYTAEFAEK 703
Cdd:PRK05672 643 PVTYPHPELEKVLERTLGVPLFQEQVMQIAIDAAGFTPGEADQLRRAMAAWRRKGRLERLRERLYDGMLARGYTGEFADR 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 704 TFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNSQPMGFYAPAQIVGCARNHGVEIRPVCVNRSRWDC 783
Cdd:PRK05672 723 IFEQIKGFGEYGFPESHAASFAKLVYASSWLKCHHPAAFCAALLNSQPMGFYSPQQLVQDARRHGVEVLPVDVNASGWDA 802
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 784 TLERIGDTdRHAVRLGMRMVRGLAAADAARIVAARMDQPFESVDDMWRRSGVPAASLVELAEADAFLpSLGLQRRGALWA 863
Cdd:PRK05672 803 TLEPLPDG-GPAVRLGLRLVRGLGEEAAERIVAARARGPFTSVEDLARRAGLDRRQLEALADAGALR-SLGGDRRQALWA 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 864 IKALRDEPLALFAAaserearaiAEQQEPEVALRQMTEGHNVVQDYSHIGLTLREHPVAFLRKALTERRIVTCAEAMNAR 943
Cdd:PRK05672 881 AGAAATERLDLLPG---------APASEAAPALPGMSEGELVAADYWTTGLSLDSHPLALLRPRLDARGVVSAAELLDVE 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 944 DGRWLMTAGLVLVRQRPGSAKGVIFMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAINGRIQREGDVVHLVAQQVFDL 1023
Cdd:PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGLWERQRREALGARLLLVRGRVQNAEGVRHLVADRLEDL 1031
|
1050
....*....|....*
gi 1583841971 1024 SGDLSGLADRDAEFR 1038
Cdd:PRK05672 1032 SPLLGGLRTRSRDFH 1046
|
|
| DnaE |
COG0587 |
DNA polymerase III, alpha subunit [Replication, recombination and repair]; |
2-1020 |
0e+00 |
|
DNA polymerase III, alpha subunit [Replication, recombination and repair];
Pssm-ID: 440352 [Multi-domain] Cd Length: 1050 Bit Score: 1312.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 2 RYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQD------GMSI 75
Cdd:COG0587 4 SFVHLHVHSEYSLLDGASRPEELVARAAELGMPALAITDHGNLFGAVRFYKAAKKAGIKPIIGCELYVAPgsrddaGYHL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 76 LVYPTDRGAYSRLTRLLTLGKGRG-GKANCVLSLDDVALYSEGLLGIL------VPDLADENCAVQFRKMA----EIFGD 144
Cdd:COG0587 84 VLLAKNREGYRNLCRLLSRAYLEGfYKGKPRIDLEDLAEHSEGLIALSgclageVGQALLAGQYDEAEAALarlkDIFGD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 145 RAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHADRYLKPPQ 224
Cdd:COG0587 164 RFYLELQRHGLPEDRRVNAALLELARELGLPLVATNDVHYLNPEDAEAHDVLLCIRTGKTLDDPGRRRFANAERYLKSPE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 225 EMERLFPRYPEALARTMEIVERCRFSLEELTYQYPEEAILPDKSPQESLEHYVWECVPSRYPEGLPPEVLRIVRHELDLI 304
Cdd:COG0587 244 EMAELFADLPEALANTLEIAERCNFSLDLGKYQLPKFPVPEGETEEEYLRKLAEEGLERRYPEGIPEEYRERLEYELDVI 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 305 RTMKYAPYFLTVFSIVRFARSQDI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERRE 383
Cdd:COG0587 324 EKMGFPGYFLIVWDFIRWARSNGIpVGPGRGSAAGSLVAYALGITDVDPIRYDLLFERFLNPERVSMPDIDIDFCHERRE 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 384 EVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMW---AWSEELVSDRSLRDQGLNPEDRRLA 460
Cdd:COG0587 404 EVIQYVYEKYGRDRVAQIATFGTMRARAAIRDVGRVLGLPYGEVDRLAKLIPndpGITLEKALEEEPELRELYDSDPEVR 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 461 LTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKAFALI 540
Cdd:COG0587 484 RLLDLARKLEGLPRHLSTHAGGVVISDDPLTDLVPLERAAMGGRPVTQFDKDDVEALGLLKFDFLGLRTLTVIRDALDLI 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 541 EEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRRE 620
Cdd:COG0587 564 KENRGIDIDLADIPLDDPKTYELLQRGDTIGVFQLESRGMRSLLKRLKPDCFEDLVALVALYRPGPMQGGMVPPYIRRKH 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 621 GKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFKDKLVSGMIRNCYTAEF 700
Cdd:COG0587 644 GREPVEYPHPELEPILKETYGVIVYQEQVMQIAQVLAGFSLGEADLLRRAMGK-KKKEEMAKQREKFVEGAVANGYDEEF 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 701 AEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNSQPMGFYAPAQIVGCARNHGVEIRPVCVNRSR 780
Cdd:COG0587 723 AEEIFDQIEKFAGYGFNKSHAAAYALLAYQTAYLKAHYPAEFMAALLNSQPMGFYKPAQYVQEARRHGIEVLPPDVNESD 802
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 781 WDCTLErigdtDRHAVRLGMRMVRGLAAADAARIVAARMDQ-PFESVDDMWRRSG---VPAASLVELAEADAFlPSLGLQ 856
Cdd:COG0587 803 WDFTVE-----PGGAIRLGLGAIKGVGEAAAEAIVAAREENgPFTSLFDFCRRVDlrkLNKRVLEALIKAGAF-DSLGPN 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 857 RRGALWAIKALRD-----------EPLALFaaaSEREARAIAEQQEPEvaLRQMTEGHNVVQDYSHIGLTLREHPVAFLR 925
Cdd:COG0587 877 RRQLLWALEAALDaaqqaqkdkasGQLSLF---GGAGDEEVAEPALPE--LPEWSEKEKLAAEKEALGLYLSGHPLDLYR 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 926 KALTERRIVTCAEAMNARDGRWLMTAGLVLVRQRPGSAKG--VIFMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAIN 1003
Cdd:COG0587 952 EELRRLGVTPAADLAELRDGRRVRVAGLVTSRQRPGTKKGkrMAFVTLEDETGSIEVVVFPEVYERYRRLLLEDRLLLVR 1031
|
1050
....*....|....*..
gi 1583841971 1004 GRIQREGDVVHLVAQQV 1020
Cdd:COG0587 1032 GKVQRRDGVVHLIAERI 1048
|
|
| polc |
TIGR00594 |
DNA-directed DNA polymerase III (polc); All proteins in this family for which functions are ... |
6-983 |
5.40e-174 |
|
DNA-directed DNA polymerase III (polc); All proteins in this family for which functions are known are DNA polymerases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273161 [Multi-domain] Cd Length: 1022 Bit Score: 537.35 E-value: 5.40e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 6 LQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGmSILVYPTDRGAY 85
Cdd:TIGR00594 4 LHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPG-SRFDKKRISKGK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 86 SRlTRLLTLGKGRGGKAN-CVLS---------------LDDVALYSEGL------LGILVPDLADEN-------CAVQFR 136
Cdd:TIGR00594 83 EA-YHLILLAKNNTGYRNlMKLSslaylegfyykpridKELLEEHSEGLialsacLSGEVPYLLLLGeerlaeeAALKYQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 137 kmaEIFGDRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHA 216
Cdd:TIGR00594 162 ---EIFGDDYYLELQDHGIPEQRVVNEALLEISEELGIPLVATNDVHYINPEDAHAHEILLCIQTGKTLSDPKRLKFYSD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 217 DRYLKPPQEMERLFPRYPEALARTMEIVERCR-FSLEELTYQYPEEAILPDKSPQES-LEHYVWECVPSRYPEGLP---- 290
Cdd:TIGR00594 239 EFYLKSPEEMAELFADIPEALANTVEIAERCNlVDVKLGPPRLPSYQIPPDFTSQEDyLRHLADEGLRERLAAGPPgykr 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 291 -PEVLRIVRHELDLIRTMKYAPYFLTVFSIVRFARSQDI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERD 368
Cdd:TIGR00594 319 rAQYKERLEYELDVINSMGFPGYFLIVWDFIKWAKDHGIpVGPGRGSAAGSLVAYALKITDIDPIKHGLLFERFLNPERI 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 369 EPPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLP----EDVIKALSSGMwAWSEELVSD 444
Cdd:TIGR00594 399 SMPDIDIDFCDERRDEVIEYVADKYGHDNVAQIITFGTMKAKAALRDVARVLDIPyaeaDRIAKLIPPRP-GKTLKEALE 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 445 RSLRDQGLNPEDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQVIEWDKDDVEALKFMKVDV 524
Cdd:TIGR00594 478 ASPQLRQLYEEDPEVKQLIDMARKLEGLNRNAGVHAAGVVISSEPLTDYVPLYKDKEGGAISTQYDMDDLEAVGLLKMDF 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 525 LALGMLTCMAKAFALIEEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRP 604
Cdd:TIGR00594 558 LGLKTLTLIQDATELIRKRRGIDLDIASIPLDDKKTFSLLQEGDTTGVFQLESRGMQDLLKRLKPDGFEDIIAVNALYRP 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 605 GPIQGDMVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFK 684
Cdd:TIGR00594 638 GPMESGMIPDFIDRKHGREPIEYPHPLLEPILKETYGVIVYQEQVMQIAQRLAGFSLGEADLLRRAMGK-KKAEEMAKER 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 685 DKLVSGMIRNCYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNSQPMGFYAPAQIVGCA 764
Cdd:TIGR00594 717 EKFVEGAEKNGYDPEIAENLFDLIEKFAGYGFNKSHAAAYGMISYQTAYLKANYPAEFMAALLTSEINDIEKVAVYIAEA 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 765 RNHGVEIRPVCVNRSRWDCTLERIGdtdrhaVRLGMRMVRGLAAADAARIVAARMDQ-PFESVDDMWRRsgVPAASL--- 840
Cdd:TIGR00594 797 KKMGIEVLPPDINESGQDFAVEDKG------IRYGLGAIKGVGESVVKSIIEERNKNgPFKSLFDFINR--VDFKKLnkk 868
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 841 -VE-LAEADAFlPSLGLQRRGALWAI-----------KALRDEPLALFaaasEREARAIAEQQEPEVALRQMTEGHNVVQ 907
Cdd:TIGR00594 869 vLEaLIKAGAF-DSLGPNRKTLLASLddaldavsrkkKAEALGQNSLF----GALSEGTKPEYVFFPPDEEWPDKKLLAL 943
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1583841971 908 DYSHIGLTLREHPVAFLRKALTERRIVTCAEAMNARDGRWLMTAGL---VLVRQRPGSAKGVIFMTIEDETGPANVVVW 983
Cdd:TIGR00594 944 EKETLGLYVSGHPLDAYEKALKNTATPAAIEDLEAPNDSQVRTLGGlnsVKKKITTKNGKPMAFLQLEDETGSIEVVVF 1022
|
|
| DNA_pol3_alpha |
pfam07733 |
Bacterial DNA polymerase III alpha NTPase domain; |
271-526 |
1.82e-113 |
|
Bacterial DNA polymerase III alpha NTPase domain;
Pssm-ID: 400196 [Multi-domain] Cd Length: 259 Bit Score: 351.81 E-value: 1.82e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 271 ESLEHYVWECVPSRYPEGLPPEVLRIVRHELDLIRTMKYAPYFLTVFSIVRFARSQDILC-QGRGSAANSAVCYILGITS 349
Cdd:pfam07733 1 EYLRKLVEEGLKERYGEGLPEEYQERLEYELNVIIKMGFAGYFLIVWDLVKWAKDNGILVgPGRGSAAGSLVAYLLGITE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 350 IDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKA 429
Cdd:pfam07733 81 VDPLKHDLLFERFLNPERVSMPDIDIDFEDERREEVIDYVKEKYGRDRVAQIATFGTYAAKSAIRDVGRALGLPYDEIDR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 430 LSSGMWAWSEELVS--DRSLRDQGLNPEDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQVI 507
Cdd:pfam07733 161 LAKLIPFELGILEKalEEEPELKELIESDPEVKRLIELAKKLEGLPRHTGQHAGGVVISPDPLTDFVPLYKADDDDRPVT 240
|
250
....*....|....*....
gi 1583841971 508 EWDKDDVEALKFMKVDVLA 526
Cdd:pfam07733 241 QFDKDDLEDLGLLKMDFLG 259
|
|
| PHP_PolIIIA_DnaE2 |
cd07434 |
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at ... |
3-259 |
8.81e-112 |
|
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at DnaE2 gene; PolIIIA DnaE2 plays a role in SOS mutagenesis/translesion synthesis and has dominant effects in determining GC variability in the bacterial genome. PolIIIAs that contain an N-terminal PHP domain have been classified into four basic groups based on genome composition, phylogenetic, and domain structural analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. DNA polymerase III holoenzyme is one of the five eubacterial DNA polymerases that are responsible for the replication of the DNA duplex. PolIIIA core enzyme catalyzes the reaction for polymerizing both DNA strands. PolC PHP is located in a different location compared to dnaE1, 2, and 3. dnaE1 is the longest compared to dnaE2 and dnaE3. A unique motif was also identified in dnaE1 and dnaE3 genes. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. PHP domains found in DnaEs of thermophilic origin exhibit 3'-5' exonuclease activity.
Pssm-ID: 213989 [Multi-domain] Cd Length: 260 Bit Score: 347.52 E-value: 8.81e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 3 YAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGMSILVYPTDR 82
Cdd:cd07434 1 YAELHCLSNFSFLRGASHPEELVARAAELGYRALAITDECSLAGVVRAHAAAKELGLKLIVGSELVLADGTRLVLLARDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 83 GAYSRLTRLLTLGKGRGGKANCVLSLDDVALYSEGLLGILVPDLAD---ENCAVQFRKMAEIFGDRAYVSLCLRRRPNDQ 159
Cdd:cd07434 81 AGYGRLCRLITLGRRRAEKGEYRLTLADLLAHAEGLLLILLPPDRLpaaAALLAQLRWLARAFPGRLWLALELHLGGDDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 160 LRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHADRYLKPPQEMERLFPRYPEALAR 239
Cdd:cd07434 161 RRLARLAALAAALGLPLVATGDVLMHSPSRRPLQDVLTAIRLGTTVAEAGRRLAANAERHLRSPAELARLFLYPPEALAE 240
|
250 260
....*....|....*....|
gi 1583841971 240 TMEIVERCRFSLEELTYQYP 259
Cdd:cd07434 241 TLEIAARCTFSLDELRYEYP 260
|
|
| POLIIIAc |
smart00481 |
DNA polymerase alpha chain like domain; DNA polymerase alpha chain like domain, incl. family ... |
5-71 |
9.89e-07 |
|
DNA polymerase alpha chain like domain; DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Pssm-ID: 197753 [Multi-domain] Cd Length: 67 Bit Score: 46.88 E-value: 9.89e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1583841971 5 ELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQD 71
Cdd:smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANIVD 67
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaE2 |
PRK05672 |
error-prone DNA polymerase; Validated |
1-1038 |
0e+00 |
|
error-prone DNA polymerase; Validated
Pssm-ID: 235553 [Multi-domain] Cd Length: 1046 Bit Score: 1417.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 1 MRYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQ-----DGMSI 75
Cdd:PRK05672 3 PPYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGpdpdpGGPHL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 76 LVYPTDRGAYSRLTRLLTLGKGRGGKANCVLSLDDVALYSEGLLGIL------------VPDLADENCAVQFRKMAEIFG 143
Cdd:PRK05672 83 LVLARDREGYGRLSRLITRARLRAGKGEYRLDLDDLAEPAGGHWAILtgcrkgfvilalPYGGDAAALAALAALLDAFFA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 144 DRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHADRYLKPP 223
Cdd:PRK05672 163 DRVWLELTLHGRPDDDRRNARLAALAARAGVPLVATGDVHMHHRSRRRLQDAMTAIRARRSLAEAGGWLAPNGERHLRSG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 224 QEMERLFPRYPEALARTMEIVERCRFSLEELTYQYPEEAILPDKSPQESLEHYVWECVPSRYPEGLPPEVLRIVRHELDL 303
Cdd:PRK05672 243 AEMARLFPDYPEALAETVELAERCAFDLDLLAYEYPDEPVPAGHTPASWLRQLTEAGAARRYGPGIPPKARAQIEHELAL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 304 IRTMKYAPYFLTVFSIVRFARSQDILCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERRE 383
Cdd:PRK05672 323 IAELGYEGYFLTVHDIVRFARSQGILCQGRGSAANSAVCYALGITEVDPVQSGLLFERFLSPERDEPPDIDVDFEHDRRE 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 384 EVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWAWSEELVSDRSLRDQGLNPEDRRLALTL 463
Cdd:PRK05672 403 EVIQYVYRRYGRDRAAQVANVITYRPRSAVRDVAKALGLSPGQVDAWAKQVSRWSGSADDLQRLRQAGLDPESPIPRRVV 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 464 KLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKAFALIEEH 543
Cdd:PRK05672 483 ELAAQLIGFPRHLSQHSGGFVICDRPLARLVPVENAAMEGRSVIQWDKDDCAAVGLVKVDVLALGMLSALHRAFDLIAEH 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 544 KDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKE 623
Cdd:PRK05672 563 RGRRLTLASIPLDDPAVYDMLCRADSVGVFQVESRAQMAMLPRLRPRTFYDLVVEVAIVRPGPIQGGMVHPYLRRRNGQE 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 624 PVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFTGGVSRFKDKLVSGMIRNCYTAEFAEK 703
Cdd:PRK05672 643 PVTYPHPELEKVLERTLGVPLFQEQVMQIAIDAAGFTPGEADQLRRAMAAWRRKGRLERLRERLYDGMLARGYTGEFADR 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 704 TFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNSQPMGFYAPAQIVGCARNHGVEIRPVCVNRSRWDC 783
Cdd:PRK05672 723 IFEQIKGFGEYGFPESHAASFAKLVYASSWLKCHHPAAFCAALLNSQPMGFYSPQQLVQDARRHGVEVLPVDVNASGWDA 802
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 784 TLERIGDTdRHAVRLGMRMVRGLAAADAARIVAARMDQPFESVDDMWRRSGVPAASLVELAEADAFLpSLGLQRRGALWA 863
Cdd:PRK05672 803 TLEPLPDG-GPAVRLGLRLVRGLGEEAAERIVAARARGPFTSVEDLARRAGLDRRQLEALADAGALR-SLGGDRRQALWA 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 864 IKALRDEPLALFAAaserearaiAEQQEPEVALRQMTEGHNVVQDYSHIGLTLREHPVAFLRKALTERRIVTCAEAMNAR 943
Cdd:PRK05672 881 AGAAATERLDLLPG---------APASEAAPALPGMSEGELVAADYWTTGLSLDSHPLALLRPRLDARGVVSAAELLDVE 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 944 DGRWLMTAGLVLVRQRPGSAKGVIFMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAINGRIQREGDVVHLVAQQVFDL 1023
Cdd:PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGLWERQRREALGARLLLVRGRVQNAEGVRHLVADRLEDL 1031
|
1050
....*....|....*
gi 1583841971 1024 SGDLSGLADRDAEFR 1038
Cdd:PRK05672 1032 SPLLGGLRTRSRDFH 1046
|
|
| DnaE |
COG0587 |
DNA polymerase III, alpha subunit [Replication, recombination and repair]; |
2-1020 |
0e+00 |
|
DNA polymerase III, alpha subunit [Replication, recombination and repair];
Pssm-ID: 440352 [Multi-domain] Cd Length: 1050 Bit Score: 1312.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 2 RYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQD------GMSI 75
Cdd:COG0587 4 SFVHLHVHSEYSLLDGASRPEELVARAAELGMPALAITDHGNLFGAVRFYKAAKKAGIKPIIGCELYVAPgsrddaGYHL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 76 LVYPTDRGAYSRLTRLLTLGKGRG-GKANCVLSLDDVALYSEGLLGIL------VPDLADENCAVQFRKMA----EIFGD 144
Cdd:COG0587 84 VLLAKNREGYRNLCRLLSRAYLEGfYKGKPRIDLEDLAEHSEGLIALSgclageVGQALLAGQYDEAEAALarlkDIFGD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 145 RAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHADRYLKPPQ 224
Cdd:COG0587 164 RFYLELQRHGLPEDRRVNAALLELARELGLPLVATNDVHYLNPEDAEAHDVLLCIRTGKTLDDPGRRRFANAERYLKSPE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 225 EMERLFPRYPEALARTMEIVERCRFSLEELTYQYPEEAILPDKSPQESLEHYVWECVPSRYPEGLPPEVLRIVRHELDLI 304
Cdd:COG0587 244 EMAELFADLPEALANTLEIAERCNFSLDLGKYQLPKFPVPEGETEEEYLRKLAEEGLERRYPEGIPEEYRERLEYELDVI 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 305 RTMKYAPYFLTVFSIVRFARSQDI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERRE 383
Cdd:COG0587 324 EKMGFPGYFLIVWDFIRWARSNGIpVGPGRGSAAGSLVAYALGITDVDPIRYDLLFERFLNPERVSMPDIDIDFCHERRE 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 384 EVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMW---AWSEELVSDRSLRDQGLNPEDRRLA 460
Cdd:COG0587 404 EVIQYVYEKYGRDRVAQIATFGTMRARAAIRDVGRVLGLPYGEVDRLAKLIPndpGITLEKALEEEPELRELYDSDPEVR 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 461 LTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKAFALI 540
Cdd:COG0587 484 RLLDLARKLEGLPRHLSTHAGGVVISDDPLTDLVPLERAAMGGRPVTQFDKDDVEALGLLKFDFLGLRTLTVIRDALDLI 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 541 EEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRRE 620
Cdd:COG0587 564 KENRGIDIDLADIPLDDPKTYELLQRGDTIGVFQLESRGMRSLLKRLKPDCFEDLVALVALYRPGPMQGGMVPPYIRRKH 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 621 GKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFKDKLVSGMIRNCYTAEF 700
Cdd:COG0587 644 GREPVEYPHPELEPILKETYGVIVYQEQVMQIAQVLAGFSLGEADLLRRAMGK-KKKEEMAKQREKFVEGAVANGYDEEF 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 701 AEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNSQPMGFYAPAQIVGCARNHGVEIRPVCVNRSR 780
Cdd:COG0587 723 AEEIFDQIEKFAGYGFNKSHAAAYALLAYQTAYLKAHYPAEFMAALLNSQPMGFYKPAQYVQEARRHGIEVLPPDVNESD 802
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 781 WDCTLErigdtDRHAVRLGMRMVRGLAAADAARIVAARMDQ-PFESVDDMWRRSG---VPAASLVELAEADAFlPSLGLQ 856
Cdd:COG0587 803 WDFTVE-----PGGAIRLGLGAIKGVGEAAAEAIVAAREENgPFTSLFDFCRRVDlrkLNKRVLEALIKAGAF-DSLGPN 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 857 RRGALWAIKALRD-----------EPLALFaaaSEREARAIAEQQEPEvaLRQMTEGHNVVQDYSHIGLTLREHPVAFLR 925
Cdd:COG0587 877 RRQLLWALEAALDaaqqaqkdkasGQLSLF---GGAGDEEVAEPALPE--LPEWSEKEKLAAEKEALGLYLSGHPLDLYR 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 926 KALTERRIVTCAEAMNARDGRWLMTAGLVLVRQRPGSAKG--VIFMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAIN 1003
Cdd:COG0587 952 EELRRLGVTPAADLAELRDGRRVRVAGLVTSRQRPGTKKGkrMAFVTLEDETGSIEVVVFPEVYERYRRLLLEDRLLLVR 1031
|
1050
....*....|....*..
gi 1583841971 1004 GRIQREGDVVHLVAQQV 1020
Cdd:COG0587 1032 GKVQRRDGVVHLIAERI 1048
|
|
| polc |
TIGR00594 |
DNA-directed DNA polymerase III (polc); All proteins in this family for which functions are ... |
6-983 |
5.40e-174 |
|
DNA-directed DNA polymerase III (polc); All proteins in this family for which functions are known are DNA polymerases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273161 [Multi-domain] Cd Length: 1022 Bit Score: 537.35 E-value: 5.40e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 6 LQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGmSILVYPTDRGAY 85
Cdd:TIGR00594 4 LHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPG-SRFDKKRISKGK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 86 SRlTRLLTLGKGRGGKAN-CVLS---------------LDDVALYSEGL------LGILVPDLADEN-------CAVQFR 136
Cdd:TIGR00594 83 EA-YHLILLAKNNTGYRNlMKLSslaylegfyykpridKELLEEHSEGLialsacLSGEVPYLLLLGeerlaeeAALKYQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 137 kmaEIFGDRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHA 216
Cdd:TIGR00594 162 ---EIFGDDYYLELQDHGIPEQRVVNEALLEISEELGIPLVATNDVHYINPEDAHAHEILLCIQTGKTLSDPKRLKFYSD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 217 DRYLKPPQEMERLFPRYPEALARTMEIVERCR-FSLEELTYQYPEEAILPDKSPQES-LEHYVWECVPSRYPEGLP---- 290
Cdd:TIGR00594 239 EFYLKSPEEMAELFADIPEALANTVEIAERCNlVDVKLGPPRLPSYQIPPDFTSQEDyLRHLADEGLRERLAAGPPgykr 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 291 -PEVLRIVRHELDLIRTMKYAPYFLTVFSIVRFARSQDI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERD 368
Cdd:TIGR00594 319 rAQYKERLEYELDVINSMGFPGYFLIVWDFIKWAKDHGIpVGPGRGSAAGSLVAYALKITDIDPIKHGLLFERFLNPERI 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 369 EPPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLP----EDVIKALSSGMwAWSEELVSD 444
Cdd:TIGR00594 399 SMPDIDIDFCDERRDEVIEYVADKYGHDNVAQIITFGTMKAKAALRDVARVLDIPyaeaDRIAKLIPPRP-GKTLKEALE 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 445 RSLRDQGLNPEDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQVIEWDKDDVEALKFMKVDV 524
Cdd:TIGR00594 478 ASPQLRQLYEEDPEVKQLIDMARKLEGLNRNAGVHAAGVVISSEPLTDYVPLYKDKEGGAISTQYDMDDLEAVGLLKMDF 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 525 LALGMLTCMAKAFALIEEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRP 604
Cdd:TIGR00594 558 LGLKTLTLIQDATELIRKRRGIDLDIASIPLDDKKTFSLLQEGDTTGVFQLESRGMQDLLKRLKPDGFEDIIAVNALYRP 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 605 GPIQGDMVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFK 684
Cdd:TIGR00594 638 GPMESGMIPDFIDRKHGREPIEYPHPLLEPILKETYGVIVYQEQVMQIAQRLAGFSLGEADLLRRAMGK-KKAEEMAKER 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 685 DKLVSGMIRNCYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNSQPMGFYAPAQIVGCA 764
Cdd:TIGR00594 717 EKFVEGAEKNGYDPEIAENLFDLIEKFAGYGFNKSHAAAYGMISYQTAYLKANYPAEFMAALLTSEINDIEKVAVYIAEA 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 765 RNHGVEIRPVCVNRSRWDCTLERIGdtdrhaVRLGMRMVRGLAAADAARIVAARMDQ-PFESVDDMWRRsgVPAASL--- 840
Cdd:TIGR00594 797 KKMGIEVLPPDINESGQDFAVEDKG------IRYGLGAIKGVGESVVKSIIEERNKNgPFKSLFDFINR--VDFKKLnkk 868
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 841 -VE-LAEADAFlPSLGLQRRGALWAI-----------KALRDEPLALFaaasEREARAIAEQQEPEVALRQMTEGHNVVQ 907
Cdd:TIGR00594 869 vLEaLIKAGAF-DSLGPNRKTLLASLddaldavsrkkKAEALGQNSLF----GALSEGTKPEYVFFPPDEEWPDKKLLAL 943
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1583841971 908 DYSHIGLTLREHPVAFLRKALTERRIVTCAEAMNARDGRWLMTAGL---VLVRQRPGSAKGVIFMTIEDETGPANVVVW 983
Cdd:TIGR00594 944 EKETLGLYVSGHPLDAYEKALKNTATPAAIEDLEAPNDSQVRTLGGlnsVKKKITTKNGKPMAFLQLEDETGSIEVVVF 1022
|
|
| dnaE |
PRK05673 |
DNA polymerase III subunit alpha; Validated |
6-1024 |
1.90e-163 |
|
DNA polymerase III subunit alpha; Validated
Pssm-ID: 235554 [Multi-domain] Cd Length: 1135 Bit Score: 513.11 E-value: 1.90e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 6 LQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGMSILVypTDRGAY 85
Cdd:PRK05673 5 LHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDV--SGGGAY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 86 SRLT-------------RLLTLG--KGRGGKANcVLSLDDVALYSEGLL-------GIL-------VPDLADENCAvqfr 136
Cdd:PRK05673 83 THLTllaknetgyrnlfKLSSRAylEGQYGYKP-RIDREWLAEHSEGLIalsgcpsGEVgtallagQYDEAEEAAA---- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 137 KMAEIFGDRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVgfERERH- 215
Cdd:PRK05673 158 EYQEIFGDRFYLELMRHGLPIERRVEHALLELAKELGLPLVATNDVHYLTPEDAEAHEALLCIAEGKTLDDP--DRFRFy 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 216 -ADRYLKPPQEMERLFPRYPEALARTMEIVERCRFSLEELTYQYPEEAILPDKSPQESLEHYVWECVPSRYPEGLPPEVL 294
Cdd:PRK05673 236 sPEQYLKSAEEMRELFADLPEALDNTVEIAERCNVEVRLGKPFLPRFPTPDGETEEDYLRKEAKEGLEERLAFLFPDEER 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 295 RIVR----HELDLIRTMKYAPYFLTVFSIVRFARSQDILC-QGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDE 369
Cdd:PRK05673 316 PEYVerleYELDVIIQMGFPGYFLIVADFIQWAKDNGIPVgPGRGSGAGSLVAYALGITDLDPLRFGLLFERFLNPERVS 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 370 PPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLP----EDVIKA--------LSSgmwAW 437
Cdd:PRK05673 396 MPDFDIDFCQDRRDEVIRYVAEKYGRDAVAQIITFGTMKAKAVIRDVGRVLGMPygfvDRITKLippdpgitLAK---AY 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 438 SEE--LvsdRSLRDQglNPEDRRLaltLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIepaaMADRQ----VIEWDK 511
Cdd:PRK05673 473 EEEpeL---RELYES--DPEVKRL---IDMARKLEGLTRNAGVHAAGVVISPTPLTDFVPL----YRDPDsgmpVTQFDM 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 512 DDVEALKFMKVDVLALGMLTCMAKAFALIEEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRT 591
Cdd:PRK05673 541 KDVEAAGLVKFDFLGLRTLTIIDDALKLIKKRRGIDVDLEAIPLDDPKTYELLQRGETLGVFQLESRGMRDLLKRLKPDC 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 592 FYDLVIQVAIVRPGPIQGDMVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSM 671
Cdd:PRK05673 621 FEDIIALVALYRPGPMESGMIPNFIDRKHGREEIEYPHPELEPILKETYGIIVYQEQVMQIAQVLAGYSLGGADLLRRAM 700
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 672 ------------ATFkftggvsrfkdklVSGMIRNCYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHP 739
Cdd:PRK05673 701 gkkkpeemakqrEIF-------------VEGAKKNGIDEEAADAIFDLLEKFAGYGFNKSHAAAYALVSYQTAYLKAHYP 767
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 740 DIFCAALLNSQpM-------GFYAPaqivgcARNHGVEIRPVCVNRSRWDCTlerigdTDRHAVRLGMRMVRGLAAADAA 812
Cdd:PRK05673 768 AEFMAALLTSD-MdntdkvaVYLDE------CRRMGIKVLPPDVNESLYDFT------VVDGDIRYGLGAIKGVGEGAVE 834
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 813 RIVAARMDQ-PFESVDDMWRRsgVPAASL----VE-LAEADAFlPSLGLQRRGAL--------WAIKALRDEPLA---LF 875
Cdd:PRK05673 835 AIVEAREEGgPFKDLFDFCAR--VDLKKVnkrvLEsLIKAGAF-DSLGPNRAALLasledavdAADQHKKAEASGqfdLF 911
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 876 AAASEREARAIAEQQE-PEVALRQMTEGhnvvqDYSHIGLTLREHPVAFLRKALTERRIVTCAEAMNARDGRWLMTAGLV 954
Cdd:PRK05673 912 GGLGEEPEDVEVSVPDvEEWDKKEKLAG-----ERETLGLYLSGHPLDGYEDELRRLRDTRLADLEPTEGGSVVTVAGLV 986
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1583841971 955 LVRQRPGSAKG--VIFMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAINGRIQREGDVVHLVAQQVFDLS 1024
Cdd:PRK05673 987 VSVRRRVTKRGnkMAIVTLEDLSGRIEVMLFSEALEKYRDLLEEDRIVVVKGQVSFDDGGLRLTAREVMDLE 1058
|
|
| dnaE |
PRK06826 |
DNA polymerase III DnaE; Reviewed |
1-1029 |
1.42e-151 |
|
DNA polymerase III DnaE; Reviewed
Pssm-ID: 235868 [Multi-domain] Cd Length: 1151 Bit Score: 482.08 E-value: 1.42e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 1 MRYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRldlqdgmsILVYPT 80
Cdd:PRK06826 3 MSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCE--------VYVAPR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 81 DR-----GAYSRLTRLLTLGKGRGGKANCV-----LSLD--------DVAL---YSEGL------LGILVPDLADENCAV 133
Cdd:PRK06826 75 SRfdkepDIDNETYHLVLLAKNETGYKNLMkivskAFTEgfyykprvDHELlkeHSEGLialsacLAGEVPRYILKGNYE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 134 QFRKMA----EIFG-DRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDV 208
Cdd:PRK06826 155 KAKEAAlfykDIFGkENFYLELQDHGIPEQRKVNEELIKLSKELGIPLVATNDVHYIRKEDAKAHDVLLCIQTGKTVDDE 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 209 GFERERHADRYLKPPQEMERLFPRYPEALARTMEIVERCRFSLEELTYQYPEEAILPDKSPQESLEHYVWECVPSRYPEg 288
Cdd:PRK06826 235 NRMRFPSDEFYLKSPEEMYELFSYVPEALENTVKIAERCNVEFEFGKSKLPKFPLPEGYDPYEYLRELCYEGLKKRYPN- 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 289 LPPEVLRIVRHELDLIRTMKYAPYFLTVFSIVRFARSQDILC-QGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQER 367
Cdd:PRK06826 314 PSEELIERLEYELSVIKQMGYVDYFLIVWDFIRFARENGIMVgPGRGSAAGSLVAYTLGITKIDPIKYNLLFERFLNPER 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 368 DEPPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPE---DVI-------------KALS 431
Cdd:PRK06826 394 VSMPDIDIDFCYERRQEVIDYVVEKYGKDRVAQIITFGTMAARAAIRDVGRALNYPYaevDRIakmiptelgitidKALE 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 432 SgmwawSEELvsdRSLRDQglNPEDRRLaltLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIepaAMADRQVI-EWD 510
Cdd:PRK06826 474 L-----NPEL---KEAYEN--DERVREL---IDTARALEGLPRHASTHAAGVVISSEPLVEYVPL---QKNDGSIVtQFT 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 511 KDDVEALKFMKVDVLALGMLTCMAKAFALIEEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPR 590
Cdd:PRK06826 538 MTTLEELGLLKMDFLGLRTLTVIRDAVDLIKKNRGIEIDLDKIDYDDKKVYKMIGEGKTVGVFQLESAGMRSFMKELKPD 617
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 591 TFYDLVIQVAIVRPGPIqgDMVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKS 670
Cdd:PRK06826 618 SLEDIIAGISLYRPGPM--DSIPRYIKNKNNPEKIEYLHPKLEPILKVTYGCIVYQEQVMQIVRDLAGYSMGRSDLVRRA 695
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 671 MATFK----------FTGGVsrfKDKLVSGMIRNCYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPD 740
Cdd:PRK06826 696 MSKKKhdvmeeerknFIYGI---VDEGGPGCIRNGIDEETANKIFDSMMDFASYAFNKSHAAAYAVVAYQTAYLKRYYPV 772
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 741 IFCAALLNS-----QPMGFYapaqiVGCARNHGVEIRPVCVNRSRWDCTLEriGDTdrhaVRLGMRMVRGLAAADAARIV 815
Cdd:PRK06826 773 EFMAALLNSvmgnsDKVAFY-----IEECRRLGIEVLPPDINESYSKFTVE--GDK----IRFGLAAVKNVGENAIDSIV 841
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 816 AARMDQ-PFESVDDMWRR---SGVPAASLVELAEADAFlPSLGLQRRGAL--------WAIKALRDE---PLALFAAASE 880
Cdd:PRK06826 842 EEREKKgKFKSLVDFCERvdtSQINKRAVESLIKAGAF-DSLGVYRSQLLavyekildSISKQRKKNiegQISLFDLIGE 920
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 881 rearaiAEQQEPEVALRQmteghnvVQDYSH----------IGLTLREHPVAFLRKALtERRIVTCAEAMNA-------- 942
Cdd:PRK06826 921 ------EEESSLEIKYPD-------IKEFDKkellamekemLGLYISGHPLEEYEETL-KKQTSATISDIISdeeedges 986
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 943 --RDGRWLMTAGLVLVRQRPGSAKGVI--FMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAINGRIQ-REGDVVHLVA 1017
Cdd:PRK06826 987 klKDGDKVIIGGIITEVKRKTTRNNEMmaFLTLEDLYGTVEVIVFPKVYEKYRSLLNEDNIVLIKGRVSlREDEEPKLIC 1066
|
1130
....*....|..
gi 1583841971 1018 QQVFDLSGDLSG 1029
Cdd:PRK06826 1067 EEIEPLVINSEK 1078
|
|
| dnaE |
PRK06920 |
DNA polymerase III subunit alpha; |
1-1023 |
1.16e-130 |
|
DNA polymerase III subunit alpha;
Pssm-ID: 180749 [Multi-domain] Cd Length: 1107 Bit Score: 424.98 E-value: 1.16e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 1 MRYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGMSILVYP- 79
Cdd:PRK06920 1 MKFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEEEEKSYPl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 80 -----TDRGaYSRLTR----LLTLGKGrGGKANCVLSlddvalYSEGLLGI----------LVPDLADENCAVQFRKMAE 140
Cdd:PRK06920 81 vllaeNEIG-YQNLLKisssIMTKSKE-GIPKKWLAH------YAKGLIAIspgkdgeieqLLLEDKESQAEEVARAYQN 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 141 IFGDrAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHepgRRQLQDVVTC---IRNKNTIDDVGFERERHAD 217
Cdd:PRK06920 153 MFGN-FYMSLQHHAIQDELLLQEKLPEFSNRVNIPVVATNDVRYI---NQSDALVHECllsVESGTKMTDPDRPRLKTDQ 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 218 RYLKPPQEMERLFPRYPEALARTMEIVERCRFSLEELTYQYPEEAILPDKSPQESLEHYVWECVPSRYpeGLPPEV-LRI 296
Cdd:PRK06920 229 YYLKSSDEMEALFSHVPEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNETADMYLRRVCEEGLQKRY--GTPKEVhINR 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 297 VRHELDLIRTMKYAPYFLTVFSIVRFARSQDILC-QGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDV 375
Cdd:PRK06920 307 LNHELNVISRMGFSDYFLIVWDFMKYAHENHILTgPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDI 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 376 DFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSS------GMwAWSEELVSDRSLRD 449
Cdd:PRK06920 387 DFPDTRRDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKlipsklGI-TLKDAYEESQSLRE 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 450 QgLNpEDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEpAAMADRQVIEWDKDDVEALKFMKVDVLALGM 529
Cdd:PRK06920 466 F-IQ-GNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYPADALEELGLLKMDFLGLRN 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 530 LTCMAKAFALIEEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQG 609
Cdd:PRK06920 543 LTLLENIIKFIEQKTGKEIDIRNLPLQDEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQ 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 610 dmVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFKDKLVS 689
Cdd:PRK06920 623 --IPTFIESKHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSK-KNRDILDQERKHFVQ 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 690 GMIRNCYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNSQPMGFYAPAQIVGCARNHGV 769
Cdd:PRK06920 700 GCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSAIGNEDKIVQYIRETKRKGF 779
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 770 EIRPVCVNRSRWDCTLErigdtdRHAVRLGMRMVRGLAAADAARIVAARMDQPFESVDDMWRRsgVPAASLVElAEADAF 849
Cdd:PRK06920 780 HVLPPSLQRSGYNFQIE------GNAIRYSLLSIRNIGMATVTALYEEREKKMFEDLFEFCLR--MPSKFVTE-RNLEAF 850
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 850 LPSLGL----QRRGALWA-IK-ALRDEPLALFAAASEREARAIAEQQEPEVALRQmteghnvvQDYSHIGLTLREHPVAF 923
Cdd:PRK06920 851 VWSGCFddfgVSRTNLWKsLKgALEYANLARDLGDAVPKSKYVQGEELSFIEQLN--------KEKEVLGFYLSSYPTAQ 922
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 924 LRKALTERRIVTCAEAMNARDGRWLMTAGLVLVRQ-RPGSAKGVIFMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAI 1002
Cdd:PRK06920 923 YVKLAKELEIPSLAQAMRHKKKVQRAIVYITSVKViRTKKGQKMAFITFCDQNDEMEAVVFPETYIHFSDKLQEGAIVLV 1002
|
1050 1060
....*....|....*....|.
gi 1583841971 1003 NGRIQREGDVVHLVAQQVFDL 1023
Cdd:PRK06920 1003 DGTIELRNHKLQWIVNGLYPL 1023
|
|
| dnaE |
PRK07374 |
DNA polymerase III subunit alpha; Validated |
1-1016 |
1.88e-114 |
|
DNA polymerase III subunit alpha; Validated
Pssm-ID: 168927 [Multi-domain] Cd Length: 1170 Bit Score: 382.53 E-value: 1.88e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 1 MRYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRL-----DLQDGMS- 74
Cdd:PRK07374 1 MAFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMyvingSIDDPQPk 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 75 ------ILVYPTDRGAYSRLTRLLTLG-----KGRGGKANCVLSLDDVALYSEGL------LG------ILV--PDLAdE 129
Cdd:PRK07374 81 kekryhLVVLAKNATGYKNLVKLTTIShlngmRGRGIFSRPCIDKELLKQYSEGLivstacLGgeipqaILRgrPDVA-R 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 130 NCAVQFRkmaEIFGDRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVg 209
Cdd:PRK07374 160 DVAAWYK---EVFGDDFYLEIQDHGSIEDRIVNVELVRIAKELGIKLIATNDAHYLSKNDVEAHDALLCVLTGKLISDE- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 210 fERERHA-DRYLKPPQEMERLFPRY------PEALARTMEIVERcrfsLEEL----TYQYPEEAILPDKSPQESLEHYVW 278
Cdd:PRK07374 236 -KRLRYTgTEYIKSEEEMLRLFRDHldpeviQEAIANTVEVAEK----VEEYdilgTYRMPRFPIPEGHTAVSYLTEVTE 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 279 ECVPSR----YPEGLPPEVLRIVRHELDLIRTMKYAPYFLTVFSIVRFARSQDI-LCQGRGSAANSAVCYILGITSIDPS 353
Cdd:PRK07374 311 QGLLKRlklnSLDEIDENYKERLSYELKIIEQMGFPTYFLVVWDYIRFAREQGIpVGPGRGSAAGSLVAYALGITNIDPV 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 354 TNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLP---EDVIKAL 430
Cdd:PRK07374 391 KNGLLFERFLNPERKSMPDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPygeADRLAKL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 431 ---SSGMWAWSEELVSDRSLrdqglNPE-------DRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEpaA 500
Cdd:PRK07374 471 ipvVRGKPAKLKAMIGKESP-----SPEfrekyekDPRVKKWVDMAMRIEGTNKTFGVHAAGVVIASDPLDELVPLQ--R 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 501 MADRQVI-EWDKDDVEALKFMKVDVLALGMLTCMAKAFALIEEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRA 579
Cdd:PRK07374 544 NNDGQVItQYFMEDIESLGLLKMDFLGLKNLTMIEKTLELVEQSTGERIDPDNLPLDDEKTFELLARGDLEGIFQLESSG 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 580 QMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGF 659
Cdd:PRK07374 624 MRQVVRDLKPSSLEDISSILALYRPGPLDAGLIPKFINRKHGREAIDFAHPLLEPILTETYGIMVYQEQIMKIAQDLAGY 703
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 660 TGGEADQLRKSMATFKftggVS---RFKDKLVSGMIRNCYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKC 736
Cdd:PRK07374 704 SLGQADLLRRAMGKKK----VSemqKHRGIFVEGASKRGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQTAYLKA 779
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 737 HHPDIFCAALLNSQpmgfyAPAQ------IVGCaRNHGVEIRPVCVNRSRWDCTLEriGDTdrhaVRLGMRMVRGLAAAD 810
Cdd:PRK07374 780 HYPVAYMAALLTVN-----AGSSdkvqryISNC-NSMGIEVMPPDINRSGIDFTPK--GNR----ILFGLSAVKNLGDGA 847
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 811 AARIVAAR-MDQPFESVDDMWRRsgVPAA--------SLVELAEADAFLPSLGlqrRGAL---------WAIKALRDEPL 872
Cdd:PRK07374 848 IRNIIAARdSDGPFKSLADLCDR--LPSNvlnrrsleSLIHCGALDAFSPNAN---RAQLiadldlvldWASSRARDRAS 922
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 873 A---LFAAASEREARAIAEQQE-PEVAlrqmteghnVVQDYS----------HIGLTLREHPVaflrKALTE-RRI---V 934
Cdd:PRK07374 923 GqgnLFDLLAGSEEEASNDLSSaPKAA---------PVPDYPpteklklekeLLGFYLSDHPL----KQLTEpAKLlapI 989
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 935 TCAEAMNARD----GRWLMTAGLVLVRQRPGSAKGVIfmTIEDETGPANVVVWPKLFEQQRRVVLGASMIAINGRIQREG 1010
Cdd:PRK07374 990 SLSSLEEQPDkakvSAIAMIPEMKQVTTRKGDRMAIL--QLEDLTGSCEAVVFPKSYERLSDHLMTDTRLLVWAKVDRRD 1067
|
....*.
gi 1583841971 1011 DVVHLV 1016
Cdd:PRK07374 1068 DRVQLI 1073
|
|
| DNA_pol3_alpha |
pfam07733 |
Bacterial DNA polymerase III alpha NTPase domain; |
271-526 |
1.82e-113 |
|
Bacterial DNA polymerase III alpha NTPase domain;
Pssm-ID: 400196 [Multi-domain] Cd Length: 259 Bit Score: 351.81 E-value: 1.82e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 271 ESLEHYVWECVPSRYPEGLPPEVLRIVRHELDLIRTMKYAPYFLTVFSIVRFARSQDILC-QGRGSAANSAVCYILGITS 349
Cdd:pfam07733 1 EYLRKLVEEGLKERYGEGLPEEYQERLEYELNVIIKMGFAGYFLIVWDLVKWAKDNGILVgPGRGSAAGSLVAYLLGITE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 350 IDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKA 429
Cdd:pfam07733 81 VDPLKHDLLFERFLNPERVSMPDIDIDFEDERREEVIDYVKEKYGRDRVAQIATFGTYAAKSAIRDVGRALGLPYDEIDR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 430 LSSGMWAWSEELVS--DRSLRDQGLNPEDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQVI 507
Cdd:pfam07733 161 LAKLIPFELGILEKalEEEPELKELIESDPEVKRLIELAKKLEGLPRHTGQHAGGVVISPDPLTDFVPLYKADDDDRPVT 240
|
250
....*....|....*....
gi 1583841971 508 EWDKDDVEALKFMKVDVLA 526
Cdd:pfam07733 241 QFDKDDLEDLGLLKMDFLG 259
|
|
| PHP_PolIIIA_DnaE2 |
cd07434 |
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at ... |
3-259 |
8.81e-112 |
|
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at DnaE2 gene; PolIIIA DnaE2 plays a role in SOS mutagenesis/translesion synthesis and has dominant effects in determining GC variability in the bacterial genome. PolIIIAs that contain an N-terminal PHP domain have been classified into four basic groups based on genome composition, phylogenetic, and domain structural analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. DNA polymerase III holoenzyme is one of the five eubacterial DNA polymerases that are responsible for the replication of the DNA duplex. PolIIIA core enzyme catalyzes the reaction for polymerizing both DNA strands. PolC PHP is located in a different location compared to dnaE1, 2, and 3. dnaE1 is the longest compared to dnaE2 and dnaE3. A unique motif was also identified in dnaE1 and dnaE3 genes. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. PHP domains found in DnaEs of thermophilic origin exhibit 3'-5' exonuclease activity.
Pssm-ID: 213989 [Multi-domain] Cd Length: 260 Bit Score: 347.52 E-value: 8.81e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 3 YAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGMSILVYPTDR 82
Cdd:cd07434 1 YAELHCLSNFSFLRGASHPEELVARAAELGYRALAITDECSLAGVVRAHAAAKELGLKLIVGSELVLADGTRLVLLARDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 83 GAYSRLTRLLTLGKGRGGKANCVLSLDDVALYSEGLLGILVPDLAD---ENCAVQFRKMAEIFGDRAYVSLCLRRRPNDQ 159
Cdd:cd07434 81 AGYGRLCRLITLGRRRAEKGEYRLTLADLLAHAEGLLLILLPPDRLpaaAALLAQLRWLARAFPGRLWLALELHLGGDDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 160 LRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHADRYLKPPQEMERLFPRYPEALAR 239
Cdd:cd07434 161 RRLARLAALAAALGLPLVATGDVLMHSPSRRPLQDVLTAIRLGTTVAEAGRRLAANAERHLRSPAELARLFLYPPEALAE 240
|
250 260
....*....|....*....|
gi 1583841971 240 TMEIVERCRFSLEELTYQYP 259
Cdd:cd07434 241 TLEIAARCTFSLDELRYEYP 260
|
|
| dnaE |
PRK07279 |
DNA polymerase III DnaE; Reviewed |
3-806 |
1.07e-99 |
|
DNA polymerase III DnaE; Reviewed
Pssm-ID: 180917 [Multi-domain] Cd Length: 1034 Bit Score: 338.93 E-value: 1.07e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 3 YAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQ-DGMSILVY--- 78
Cdd:PRK07279 2 FAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFvEEQEVTLRlia 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 79 PTDRGaYSRLTRLLTLgkgrggKANCVLSLDDVALYSEGLlGILVPdladencavQFRKMAEI-FGDRAYVSLclrrrpn 157
Cdd:PRK07279 82 KNTQG-YKNLLKISTA------KMSGKKQFSDLSQYLEGI-AVIVP---------YFDWSETLeLPFDYYIGV------- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 158 DQLRLHELSNMAM--RHRVRTVVTNDvlfhepgRRQLQdVVTCIRNKNTIDDVGFereRHADRYLKPPQEMERLFP-RYP 234
Cdd:PRK07279 138 DQETPGSDFKRPIlpLRTVRYFESAD-------RETLQ-MLHAIRDNLSLREVPL---VSSDQELISCQSLETLFQeRFP 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 235 EALARtmeivercrfsLEELT----YQYPEEAILP----DKSPQESL---------EHYVWEcvpSRYPEGLppevlriv 297
Cdd:PRK07279 207 QALDN-----------LEKLVsgisYDFDTDLKLPrfnrDRPAVEELrelaelglkEKGLWS---SPYQERL-------- 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 298 RHELDLIRTMKYAPYFLTVFSIVRFARSQDILC-QGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVD 376
Cdd:PRK07279 265 DKELSVIHDMGFDDYFLIVWDLLRFGRSQGYYMgMGRGSAAGSLVAYALDITGIDPVKHNLLFERFLNKERYSMPDIDID 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 377 FEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSgMWAWSEELVS--DRSLRDQGLNP 454
Cdd:PRK07279 345 LPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGAKQAIRDVFKRFGVPEYELSNLTK-KISFRDSLASvyEKNISFRQIIN 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 455 EDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAmaDRQVIEWDKDDVEALKFMKVDVLALGMLTCMA 534
Cdd:PRK07279 424 SKLEYQKAFEIAKRIEGNPRQTSIHAAGVVMSDDDLTNHIPLKYGD--DMMITQYDAHAVEANGLLKMDFLGLRNLTFVQ 501
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 535 KAFALIEEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPiqGDMVHP 614
Cdd:PRK07279 502 KMQEKVAKDYGIHIDIEAIDLEDKETLALFAAGDTKGIFQFEQPGAINLLKRIKPVCFEDIVATTSLNRPGA--SDYTDN 579
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 615 YLRRREGKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFKDKLVSGMIRN 694
Cdd:PRK07279 580 FVKRRHGQEKVDLIDPVIAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSK-KNASEMQKMEEDFLQGALEL 658
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 695 CYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNsqpmgfYAPAQIVGCARNHGVEIRPV 774
Cdd:PRK07279 659 GHSEEKARELFDRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYDIMLN------YSSSDYITDALEFGFEVAKL 732
|
810 820 830
....*....|....*....|....*....|...
gi 1583841971 775 CVNRSrwdctleRIGD-TDRHAVRLGMRMVRGL 806
Cdd:PRK07279 733 SINTI-------PYHDkIENKKIYLGLKNIKGL 758
|
|
| dnaE |
PRK05898 |
DNA polymerase III subunit alpha; |
180-824 |
2.40e-89 |
|
DNA polymerase III subunit alpha;
Pssm-ID: 135648 [Multi-domain] Cd Length: 971 Bit Score: 308.69 E-value: 2.40e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 180 NDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHADRYLKPpQEMERLFPryPEALARTMEIVERCRFSLEELTY--- 256
Cdd:PRK05898 141 NSVFYANKNDKIVFNAMLAIKNDLKIDELKNCQDFDNNHFLND-NEAQSLFS--PIQLDNLNKVLNELKVEIHDLPInii 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 257 QYPEEAILPDKSpqeslehYVWECVPSRYPEGLPpEVLRIVR--------HELDLIRTMKYAPYFLTVFSIVRFARSQDI 328
Cdd:PRK05898 218 KYDKQNSIISSE-------ILKQLCISGLNKRLN-ANDGQVKkiyvkrlkYELDIINEKQFDDYFLIVYDFINFAKSNGI 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 329 LC-QGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRY 407
Cdd:PRK05898 290 IIgPGRGSAAGSLIAYLLHITDIDPIKYNLIFERFLNPTRKSMPDIDTDIMDERRDEVVEYLFEKYGNDHVAHIITFQRI 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 408 RAKGAIRDVGKALGLPEDVIKALSSGMWAWSEELVSDRSLRDQGLNPEDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTH 487
Cdd:PRK05898 370 KAKMAIRDVGRILGIDLKVIDKICKNIKPDYEEDLDLAIKKNTILKEMYVLHKELFDLAKKIINAPRQIGTHAAGVVLSN 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 488 DRLDDLVPIEpAAMADRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKAFALIEEHKDEHLDLAKIPQEDQATYAMIRKA 567
Cdd:PRK05898 450 SLLTNIIPIQ-LGINDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKLIKENQNKKIDLFNINLNDKNVFEDLAKG 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 568 DTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGdmVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPLFQE 647
Cdd:PRK05898 529 RTNGIFQLESPGMKKVLKKVKPQNIEDISIVSALFRPGPQQN--IKTFVERRFKREEFSYWNEATKKILEPTHGIIVYQE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 648 SAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFKDKLVSGMIRNCYTAEFAEKTFSQLEGFGSYGFPESHAASFALI 727
Cdd:PRK05898 607 QVINLVKTIANFDIATADNFRRAISK-KDEKILIQLKKDFIEGALKNNYKQPLVNQIFEYIFSFADYGFNHSHSLAYSYI 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 728 AYASNYVKCHHPDIFCAALLNSQPMGFYAPAQIVGCARNHGVEIRPVCVNRSRWDCTLerigDTDRHAVRLGMRMVRGLA 807
Cdd:PRK05898 686 SYWMAYLKHYYPLEFLSILLSHTSASKDKLLSYLNEAKEFNISIKKPDINYSSNSFVL----DTQKQIIRFGFNTIKGFG 761
|
650
....*....|....*..
gi 1583841971 808 AADAARIVAARMDQPFE 824
Cdd:PRK05898 762 DELLKKIKSALQNKTFS 778
|
|
| dnaE |
PRK07135 |
DNA polymerase III DnaE; Validated |
1-749 |
7.70e-87 |
|
DNA polymerase III DnaE; Validated
Pssm-ID: 235944 [Multi-domain] Cd Length: 973 Bit Score: 301.61 E-value: 7.70e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 1 MRYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGMSILVYPT 80
Cdd:PRK07135 1 MKLINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVENFRFILLAKN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 81 DRGaYsRLTRLLTLGKGRGGKancvLSLDDvaLYSEGLLGILVPDLAdenCAVQFRKMAEIfgDRAYVSlclrrrpndql 160
Cdd:PRK07135 81 YSG-Y-KLLNELSSKKSKNKE----IELND--LDSDNIIIIDHPKNG---FYAKNKEQLEL--KNYYIN----------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 161 rlhelSNMAMRHRVRTVVTNDVLFHE--PGRRQLQDVVTCIRNKNTIDDVGFERErhadrYLKPPQEMerlfprypeaLA 238
Cdd:PRK07135 137 -----SNDPKIENAVYVQERKLLFAEdnEYLKILNKIGNNKEENSNFKFFDFEKW-----FEDIDEKI----------LK 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 239 RTMEIVERCRFsleeltyQYPEEAI-LPD------KSPQESLEHYVWECVPSRYPEgLP--PEVLRIVRHELDLIRTMKY 309
Cdd:PRK07135 197 RTNYLVENINI-------EFPKKEFnLPDfdnnlgLESDLFLKKILKESVINKKAE-LKyyPNVKERINYEYSVIKKLKF 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 310 APYFLTVFSIVRFARSQDILC-QGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQW 388
Cdd:PRK07135 269 SNYFLIIWDFIKWARKNKISIgPGRGSASGSLVSYLLNITSVNPLKYDLLFERFLNPDRITMPDIDIDIQDDRRDEVIDY 348
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 389 IYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWAW---SEELVSDRSLRDQGLNPEDRRLALTLKL 465
Cdd:PRK07135 349 IFEKYGYEHCATISTFQTLGAKSAIRDVGRMLGIPESDVNAISKLIPNNqslEEAYDKNKSFFRELISKGDPIYKKLYKI 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 466 AQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAAMADRQViEWDKDDVEALKFMKVDVLALGMLTCMAKAFALI--EEH 543
Cdd:PRK07135 429 AKKLEGLPRQSGTHAAGIIISNKPITNYVPTFESKDNYNQV-QYSMEFLEDFGLLKIDLLGLKNLTIIKNIEEKInkELL 507
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 544 KDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQgdMVHPYLRRREGKE 623
Cdd:PRK07135 508 FDHLINFNDLPIIDKKTNNLLSNGKTEGIFQLESPGMKSTIKKVGIDSFEDIVAIISLYRPGPIQ--YIPIYAKNKKNPK 585
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 624 PVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFKDKLVSGMIRNCYTAEFAEK 703
Cdd:PRK07135 586 NIEKIHPEYDEIVAPTYGIIIYQEQIMQIAQKVAGFSFAQADLLRRAISK-KDETKLDKIKDKFIEGGIKNGYSKKVLEK 664
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1583841971 704 TFSQLEGFGSYGFPESHAASFALIAYASNYVKCHHPDIFCAALLNS 749
Cdd:PRK07135 665 IYSLIEKFADYGFNKSHAVAYATLAYKMAYYKANYPLVFYSALISN 710
|
|
| PRK09532 |
PRK09532 |
DNA polymerase III subunit alpha; Reviewed |
1-714 |
5.27e-81 |
|
DNA polymerase III subunit alpha; Reviewed
Pssm-ID: 181933 [Multi-domain] Cd Length: 874 Bit Score: 283.17 E-value: 5.27e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 1 MRYAELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRL-----DLQDGMSI 75
Cdd:PRK09532 1 MSFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMyvingDIEKQKRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 76 -----LVYPTDRGAYSRLTRLLTLG-----KGRGGKANCVLSLDDVALYSEGL------LGILVPDLADENCAVQFRKMA 139
Cdd:PRK09532 81 rkyhqVVLAKNTQGYKNLVKLTTIShlqgvQGKGIFARPCINKELLEQYHEGLivtsacLGGEIPQAILSGRPDAARKVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 140 ----EIFGDRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVgfERERH 215
Cdd:PRK09532 161 kwykKLFGDDFYLEIQDHGSQEDRIVNVEIVKIARELGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITED--KRLRY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 216 A-DRYLKPPQEMERLFPRY------PEALARTMEIVERCRfsleelTY------QYPEEAILPDKSPQESLEHYVWECVP 282
Cdd:PRK09532 239 SgTEYLKSAEEMRLLFRDHlpddviAEAIANTLEVADKIE------PYnilgepRIPNYPVPSGHTPDTYVEEVAWQGLL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 283 SRYP----EGLPPEVLRIVRHELDLIRTMKYAPYFLTVFSIVRFARSQDI-LCQGRGSAANSAVCYILGITSIDPSTNDL 357
Cdd:PRK09532 313 ERLNcksrSEVEPVYKERLEYELKMLQQMGFSTYFLVVWDYIKYARDNNIpVGPGRGSAAGSLVAYCLKITNIDPVHHGL 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 358 LFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLP---EDVIKAL---S 431
Cdd:PRK09532 393 LFERFLNPERKSMPDIDTDFCIERRDEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPygeADKMAKLipvS 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 432 SGMWAWSEELVSdrslrDQGLNPE-------DRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPAamADR 504
Cdd:PRK09532 473 RGKPTKLKVMIS-----DETPEPEfkekydnDPRVRRWLDMAIRIEGTNKTFGVHAAGVVISSEPLDEIVPLQKN--NDG 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 505 QVI-EWDKDDVEALKFMKVDVLALGMLTCMAKAFALIEEHKDEHLDLAKIPQED-------------------QATYAMI 564
Cdd:PRK09532 546 AVItQYFMEDLESLGLLKMDFLGLRNLTTIQKTADLIKENRGVEIDLDQLPLDErkalkilakgeakklpkdvQKTHKLL 625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 565 RKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPL 644
Cdd:PRK09532 626 ERGDLEGIFQLESSGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREPIDYEHQLLEPILNETYGVLV 705
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 645 FQESAMKVAMVCAGFTGGEADQLRKSMATFKFTgGVSRFKDKLVSGMIRNCYTAEFAEKTFSQLEGFGSY 714
Cdd:PRK09532 706 YQEQIMKMAQDLAGYSLGEADLLRRAMGKKKIS-EMQKHREKFIDGAAKNGVSKKVAENLFDQMVKFAEY 774
|
|
| DNA_pol3_finger |
pfam17657 |
Bacterial DNA polymerase III alpha subunit finger domain; |
529-695 |
3.53e-73 |
|
Bacterial DNA polymerase III alpha subunit finger domain;
Pssm-ID: 407553 [Multi-domain] Cd Length: 166 Bit Score: 239.36 E-value: 3.53e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 529 MLTCMAKAFALIEEHKDEHLDLAKIPQEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQ 608
Cdd:pfam17657 1 TLTIIRDALDLIKENRGIGIDLATIPLDDPKTYKLLSSGDTLGVFQFESRGMRQMLKRLKPDTFEDLVALSALYRPGPMQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 609 GDMVHPYLRRREGKEPVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATfKFTGGVSRFKDKLV 688
Cdd:pfam17657 81 GGNVDDYIKRKHGKEKIEYPHPDLEPILKETYGVIVYQEQVMQIAQILAGFSLGEADLLRRAMGK-KKPEEMEKLREKFI 159
|
....*..
gi 1583841971 689 SGMIRNC 695
Cdd:pfam17657 160 EGAKENG 166
|
|
| PHP_PolIIIA_DnaE1 |
cd07433 |
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III ... |
6-260 |
3.92e-33 |
|
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1; PolIIIAs that contain an N-terminal PHP domain have been classified into four basic groups based on genome composition, phylogenetic, and domain structural analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. DNA polymerase III holoenzyme is one of the five eubacterial DNA polymerases that are responsible for the replication of the DNA duplex. PolIIIA core enzyme catalyzes the reaction for polymerizing both DNA strands. dnaE1 is the longest compared to dnaE2 and dnaE3. A unique motif was also identified in dnaE1 and dnaE3 genes.
Pssm-ID: 213988 [Multi-domain] Cd Length: 277 Bit Score: 129.52 E-value: 3.92e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 6 LQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGM------SILVYP 79
Cdd:cd07433 5 LRVHSEYSLLDGAVRIKKLVKLAKEDGMPALAITDLSNLFGAVKFYKAASKAGIKPIIGADLNVANPDdadepfRLTLLA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 80 TDRGAYSRLTRLLTLG--KGRGGKANCVlSLDDVALYSEGLL-------GILV-------PDLAdENCAvqfRKMAEIFG 143
Cdd:cd07433 85 QNEQGYKNLTELISRAylEGQRNGGPHI-KLEWLAEYSEGLIalsggrdGDIGqlllegnPDLA-EALL---QFLKKIFP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 144 DRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVGFERERHADRYLKPP 223
Cdd:cd07433 160 DRFYLELQRHGRPEEEAYEHALIDLAYELGLPLVATNDVRFLKPEDFEAHEARVCIAEGRTLDDPRRPRRYSPQQYFKSA 239
|
250 260 270
....*....|....*....|....*....|....*..
gi 1583841971 224 QEMERLFPRYPEALARTMEIVERCRFSLEELTYQYPE 260
Cdd:cd07433 240 EEMAELFADLPEAIENTVEIAKRCNVRIELGKPFLPD 276
|
|
| PHP_PolIIIA_DnaE3 |
cd12113 |
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III ... |
6-259 |
9.84e-24 |
|
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3; PolIIIAs that contain an N-terminal PHP domain have been classified into four basic groups based on genome composition, phylogenetic, and domain structural analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. DNA polymerase III holoenzyme is one of the five eubacterial DNA polymerases that is responsible for the replication of the DNA duplex. The alpha subunit of DNA polymerase III core enzyme catalyzes the reaction for polymerizing both DNA strands. The PolIIIA PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination, and like other PHP structures, the PolIIIA PHP exhibits a distorted (beta/alpha) 7 barrel and coordinates up to 3 metals. Initially, it was proposed that PHP region might be involved in pyrophosphate hydrolysis, but such an activity has not been found. It has been shown that the PHP of PolIIIA has a trinuclear metal complex and is capable of proofreading activity. Bacterial genome replication and DNA repair mechanisms is related to the GC content of its genomes. There is a correlation between GC content variations and the dimeric combinations of PolIIIA subunits. Eubacteria can be grouped into different GC variable groups: the full-spectrum or dnaE1 group, the high-GC or dnaE2-dnaE1 group, and the low GC or polC-dnaE3 group.
Pssm-ID: 213997 [Multi-domain] Cd Length: 283 Bit Score: 102.52 E-value: 9.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 6 LQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGC--------RLDLQDGMS--- 74
Cdd:cd12113 5 LHVHTEYSLLDGAIRIKDLVKRAKELGMPALAITDHGNMFGAIEFYKAAKKAGIKPIIGCevyvapgsRFDKKDKKGdkr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 75 ----ILVYPTDRGaYSRLTRLLTLG-------KGRggkancvLSLDDVALYSEGL------LGILVPDLA---DENCAVQ 134
Cdd:cd12113 85 yyhlVLLAKNEEG-YRNLMKLVSLAylegfyyKPR-------IDKELLAKYSEGLialsacLAGEIPQLLlngDEEEARE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 135 -FRKMAEIFG-DRAYVSLCLRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHEPGRRQLQDVVTCIRNKNTIDDVgfER 212
Cdd:cd12113 157 aALEYRDIFGkDNFYLELQDHGLPEQKKVNEGLIELAKELGIPLVATNDVHYLNKEDAEAHDVLLCIQTGKTLDDP--NR 234
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1583841971 213 ERHADR--YLKPPQEMERLFPRYPEALARTMEIVERCRFSLEELTYQYP 259
Cdd:cd12113 235 MRFDTDefYLKSPEEMRELFPDVPEALENTLEIAERCNVELDFGKLHLP 283
|
|
| DnaE_OBF |
cd04485 |
DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding ... |
951-1024 |
1.25e-18 |
|
DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Pssm-ID: 239931 [Multi-domain] Cd Length: 84 Bit Score: 81.40 E-value: 1.25e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1583841971 951 AGLVLVRQRPGSAKG--VIFMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAINGRIQREGDVVHLVAQQVFDLS 1024
Cdd:cd04485 3 AGLVTSVRRRRTKKGkrMAFVTLEDLTGSIEVVVFPETYEKYRDLLKEDALLLVEGKVERRDGGLRLIAERIEDLE 78
|
|
| PHP_PolIIIA |
cd07431 |
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III; ... |
4-251 |
2.39e-18 |
|
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III; PolIIIAs that contain an N-terminal PHP domain have been classified into four basic groups based on genome composition, phylogenetic, and domain structural analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. DNA polymerase III holoenzyme is one of the five eubacterial DNA polymerases that is responsible for the replication of the DNA duplex. The alpha subunit of DNA polymerase III core enzyme catalyzes the reaction for polymerizing both DNA strands. The PolIIIA PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination, and like other PHP structures, exhibits a distorted (beta/alpha) 7 barrel and coordinates up to 3 metals. Initially, it was proposed that PHP region might be involved in pyrophosphate hydrolysis, but such activity has not been found. It has been shown that the PHP domain of PolIIIA has a trinuclear metal complex and is capable of proofreading activity.
Pssm-ID: 213986 [Multi-domain] Cd Length: 179 Bit Score: 83.79 E-value: 2.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 4 AELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQDGM---SILVYPT 80
Cdd:cd07431 1 AHLHVHSSYSLLDSAIRPEDLVARAKELGYSALALTDRNVLYGAVRFYKACKKAGIKPIIGLELTVEGDGepyPLLLLAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 81 DRGAYSRLTRLLTLGKGRGGKANC-VLSLDDVALYSEGLLGILVPDladencavqfrkmaeifgdrayvslclrrrpndq 159
Cdd:cd07431 81 NNEGYQNLLRLSTAAMLGEEKDGVpYLDLEELAEAASGLLVVLLGP---------------------------------- 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 160 lRLHELSNmamRHRVRTVVTNDVLFHEPGRRQLQDVVTCirnkntiddvgfererhadrylkppqemerlfpryPEALAR 239
Cdd:cd07431 127 -LLLLLAA---EQGLPLVATNDVHYLNPEDAFAADVLTA-----------------------------------FLAVAN 167
|
250
....*....|..
gi 1583841971 240 TMEIVERCRFSL 251
Cdd:cd07431 168 TVRIAKECAVEL 179
|
|
| HHH_6 |
pfam14579 |
Helix-hairpin-helix motif; The HHH domain is a short DNA-binding domain. |
768-860 |
1.11e-16 |
|
Helix-hairpin-helix motif; The HHH domain is a short DNA-binding domain.
Pssm-ID: 434050 [Multi-domain] Cd Length: 88 Bit Score: 75.97 E-value: 1.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583841971 768 GVEIRPVCVNRSRWDCTLERigdtdrHAVRLGMRMVRGLAAADAARIVAARMDQPFESVDDMWRR--SGVPAASLVELAE 845
Cdd:pfam14579 1 GIEVLPPDINRSDWDFTVEG------GGIRLGLGAIKGLGEAAAERIVEERENGPFKSLEDFARRvdLKLNKRVLEALIK 74
|
90
....*....|....*
gi 1583841971 846 ADAFlPSLGLQRRGA 860
Cdd:pfam14579 75 AGAF-DSLGGNRRQL 88
|
|
| tRNA_anti-codon |
pfam01336 |
OB-fold nucleic acid binding domain; This family contains OB-fold domains that bind to nucleic ... |
956-1023 |
1.67e-08 |
|
OB-fold nucleic acid binding domain; This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Pssm-ID: 460164 [Multi-domain] Cd Length: 75 Bit Score: 52.24 E-value: 1.67e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1583841971 956 VRQRPGSAKGVIFMTIEDETGPANVVVWPKLFEQQRRVVLGASMIAINGRIQ-REGDVVHLVAQQVFDL 1023
Cdd:pfam01336 7 VTSIRRSGGKLLFLTLRDGTGSIQVVVFKEEAEKLAKKLKEGDVVRVTGKVKkRKGGELELVVEEIELL 75
|
|
| POLIIIAc |
smart00481 |
DNA polymerase alpha chain like domain; DNA polymerase alpha chain like domain, incl. family ... |
5-71 |
9.89e-07 |
|
DNA polymerase alpha chain like domain; DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Pssm-ID: 197753 [Multi-domain] Cd Length: 67 Bit Score: 46.88 E-value: 9.89e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1583841971 5 ELQVTTHFSFLRGASSADELFVTARELAIDALGVVDRNSLAGIVRALEASRATGVSLVVGCRLDLQD 71
Cdd:smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANIVD 67
|
|
|