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Conserved domains on  [gi|1502718364|ref|WP_122326245|]
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MULTISPECIES: TerB N-terminal domain-containing protein [Pseudomonas syringae group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TerB_N pfam13208
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
 140-342 8.81e-86

TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.


:

Pssm-ID: 433039  Cd Length: 204  Bit Score: 271.54  E-value: 8.81e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 140 TVTVAEFSIPGGLLYVGDVLGSYDAQEPSLINPKLRIAKSHVDVQERLMPYWPSYHSISPEARRGYLQWLAGGRNDPEAD 219
Cdd:pfam13208   1 SVTVAGLSIPGGLVYVGTSSDGYGGREESFIDPSLSVASDGSDYFGPFMSYWPSYSSLSPAQRRAYLDWLAQGRKGPDTD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 220 TGYVFLFFYGLERRALLDG-QGDSTASAEIPTIITEVHRLLAIYGDNRSFRGYANGFLSHIGSSASDPNLYLGRPPEAAP 298
Cdd:pfam13208  81 LGYVFLYFYGLERRVGVDNpQEGYVKLIELPAIYAELDRLLAVYGDDYSFRGYATDLLDLARLLPSPDNPYELLPDPETF 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1502718364 299 IGYEMPLPLRIALGQHAVNKHPMDADWGHAWALGDPNISKRTPV 342
Cdd:pfam13208 161 SAYELPLSLRVALGQYAIDGEPLPAEWALAWALLDPELKLRTPA 204
TerB_C pfam15615
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
 679-833 3.86e-46

TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.


:

Pssm-ID: 434814 [Multi-domain]  Cd Length: 143  Bit Score: 161.76  E-value: 3.86e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 679 ANAVKGATQPANGGFTLDHERIAQLQRETAAVSALLAQVFTEDQTDDhfsdSPISSAPANTSESAACIEAGRVDEqvtss 758
Cdd:pfam15615   1 AEEVEEAAEAARKGISLDLDRIAAIQEETAAVSALLAEIFVEEETEE----ALTEIDEEPESEEAETALADKVDE----- 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1502718364 759 dipGLDLEHSAFLRLLMSRTEWSRSELEEAASDMELMLDGALEQINDMGFDRFNMPVTEGDDPVEINADILEELT 833
Cdd:pfam15615  72 ---GLDEAHSALLRLLLARAQWPREELEELARDHGLMPGGAIESINEWAFDEFDDLVIEDDDPIEINEDYLEELR 143
terB cd07176
tellurite resistance protein terB; This family contains uncharacterized bacterial proteins ...
 540-647 3.40e-22

tellurite resistance protein terB; This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.


:

Pssm-ID: 143580  Cd Length: 111  Bit Score: 92.29  E-value: 3.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 540 AASVTLDLASAVAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQ--IQLQQPPTLASLKKRLDP-LPIDAKRTI 616
Cdd:cd07176     1 FAEALVALAALVAAADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDklLALLRPEGLAALLKAAAKlLPPELRETA 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1502718364 617 ASFLAHLAQADGTVSPSEVKLLERVYKTLQL 647
Cdd:cd07176    81 FAVAVDIAAADGEVDPEERAVLEKLYRALGL 111
Phage_holin_3_6 pfam07332
Putative Actinobacterial Holin-X, holin superfamily III; Phage_holin_3_6 is a family of small ...
 10-62 2.88e-03

Putative Actinobacterial Holin-X, holin superfamily III; Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.


:

Pssm-ID: 462148  Cd Length: 113  Bit Score: 38.28  E-value: 2.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1502718364  10 AGNGILFGLVLVGGAIASVPkSAWIAIGIVAGVVAIVGGIGWLAAKRKARQAS 62
Cdd:pfam07332  44 ALFGLLFLLAALALALALVL-PLWLAALIVAAVLLVVAGVLALVGRKRLKRAS 95
 
Name Accession Description Interval E-value
TerB_N pfam13208
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
 140-342 8.81e-86

TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.


Pssm-ID: 433039  Cd Length: 204  Bit Score: 271.54  E-value: 8.81e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 140 TVTVAEFSIPGGLLYVGDVLGSYDAQEPSLINPKLRIAKSHVDVQERLMPYWPSYHSISPEARRGYLQWLAGGRNDPEAD 219
Cdd:pfam13208   1 SVTVAGLSIPGGLVYVGTSSDGYGGREESFIDPSLSVASDGSDYFGPFMSYWPSYSSLSPAQRRAYLDWLAQGRKGPDTD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 220 TGYVFLFFYGLERRALLDG-QGDSTASAEIPTIITEVHRLLAIYGDNRSFRGYANGFLSHIGSSASDPNLYLGRPPEAAP 298
Cdd:pfam13208  81 LGYVFLYFYGLERRVGVDNpQEGYVKLIELPAIYAELDRLLAVYGDDYSFRGYATDLLDLARLLPSPDNPYELLPDPETF 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1502718364 299 IGYEMPLPLRIALGQHAVNKHPMDADWGHAWALGDPNISKRTPV 342
Cdd:pfam13208 161 SAYELPLSLRVALGQYAIDGEPLPAEWALAWALLDPELKLRTPA 204
TerB_C pfam15615
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
 679-833 3.86e-46

TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.


Pssm-ID: 434814 [Multi-domain]  Cd Length: 143  Bit Score: 161.76  E-value: 3.86e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 679 ANAVKGATQPANGGFTLDHERIAQLQRETAAVSALLAQVFTEDQTDDhfsdSPISSAPANTSESAACIEAGRVDEqvtss 758
Cdd:pfam15615   1 AEEVEEAAEAARKGISLDLDRIAAIQEETAAVSALLAEIFVEEETEE----ALTEIDEEPESEEAETALADKVDE----- 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1502718364 759 dipGLDLEHSAFLRLLMSRTEWSRSELEEAASDMELMLDGALEQINDMGFDRFNMPVTEGDDPVEINADILEELT 833
Cdd:pfam15615  72 ---GLDEAHSALLRLLLARAQWPREELEELARDHGLMPGGAIESINEWAFDEFDDLVIEDDDPIEINEDYLEELR 143
terB cd07176
tellurite resistance protein terB; This family contains uncharacterized bacterial proteins ...
 540-647 3.40e-22

tellurite resistance protein terB; This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.


Pssm-ID: 143580  Cd Length: 111  Bit Score: 92.29  E-value: 3.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 540 AASVTLDLASAVAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQ--IQLQQPPTLASLKKRLDP-LPIDAKRTI 616
Cdd:cd07176     1 FAEALVALAALVAAADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDklLALLRPEGLAALLKAAAKlLPPELRETA 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1502718364 617 ASFLAHLAQADGTVSPSEVKLLERVYKTLQL 647
Cdd:cd07176    81 FAVAVDIAAADGEVDPEERAVLEKLYRALGL 111
TerB COG3793
Tellurite resistance protein TerB [Inorganic ion transport and metabolism];
525-648 8.73e-13

Tellurite resistance protein TerB [Inorganic ion transport and metabolism];


Pssm-ID: 443007 [Multi-domain]  Cd Length: 128  Bit Score: 65.77  E-value: 8.73e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 525 TQPEDGALRATPAYNAASVTLDLASAVAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQIQLQQPPTLAS---- 600
Cdd:COG3793     1 AELTSEVKRFSPNREFLEALVAGCALVAAADGDIDPEERQKIAALIQSLPELAPFDADELIAAFEAIVDLLEFRAEalee 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1502718364 601 LKKRLDPLPiDAKRTIASFLAHLAQADGTVSPSEVKLLERVYKTLQLD 648
Cdd:COG3793    81 LAKLLKGDP-ELAELVLRLAVDVAAADGVFDPEEKAVLEEICQALGLD 127
TerB pfam05099
Tellurite resistance protein TerB; This family contains the TerB tellurite resistance proteins ...
 551-648 7.82e-05

Tellurite resistance protein TerB; This family contains the TerB tellurite resistance proteins from a a number of bacteria.


Pssm-ID: 428302  Cd Length: 118  Bit Score: 42.94  E-value: 7.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 551 VAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQIQLQQPPTL----ASLKKRLDPlpiDAKRTIASFLAHLAQA 626
Cdd:pfam05099  11 VARADGQVSPSERAALRELLASRFGLPPEEAKDLIELAEAAEQEAVDLyrftRQLKDHFDP---EQRQALIEALWEIAYA 87

                          90       100
                  ....*....|....*....|..
gi 1502718364 627 DGTVSPSEVKLLERVYKTLQLD 648
Cdd:pfam05099  88 DGELDPAEDAVIRRVAELLGLS 109
Phage_holin_3_6 pfam07332
Putative Actinobacterial Holin-X, holin superfamily III; Phage_holin_3_6 is a family of small ...
 10-62 2.88e-03

Putative Actinobacterial Holin-X, holin superfamily III; Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.


Pssm-ID: 462148  Cd Length: 113  Bit Score: 38.28  E-value: 2.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1502718364  10 AGNGILFGLVLVGGAIASVPkSAWIAIGIVAGVVAIVGGIGWLAAKRKARQAS 62
Cdd:pfam07332  44 ALFGLLFLLAALALALALVL-PLWLAALIVAAVLLVVAGVLALVGRKRLKRAS 95
 
Name Accession Description Interval E-value
TerB_N pfam13208
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
 140-342 8.81e-86

TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.


Pssm-ID: 433039  Cd Length: 204  Bit Score: 271.54  E-value: 8.81e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 140 TVTVAEFSIPGGLLYVGDVLGSYDAQEPSLINPKLRIAKSHVDVQERLMPYWPSYHSISPEARRGYLQWLAGGRNDPEAD 219
Cdd:pfam13208   1 SVTVAGLSIPGGLVYVGTSSDGYGGREESFIDPSLSVASDGSDYFGPFMSYWPSYSSLSPAQRRAYLDWLAQGRKGPDTD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 220 TGYVFLFFYGLERRALLDG-QGDSTASAEIPTIITEVHRLLAIYGDNRSFRGYANGFLSHIGSSASDPNLYLGRPPEAAP 298
Cdd:pfam13208  81 LGYVFLYFYGLERRVGVDNpQEGYVKLIELPAIYAELDRLLAVYGDDYSFRGYATDLLDLARLLPSPDNPYELLPDPETF 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1502718364 299 IGYEMPLPLRIALGQHAVNKHPMDADWGHAWALGDPNISKRTPV 342
Cdd:pfam13208 161 SAYELPLSLRVALGQYAIDGEPLPAEWALAWALLDPELKLRTPA 204
TerB_C pfam15615
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
 679-833 3.86e-46

TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.


Pssm-ID: 434814 [Multi-domain]  Cd Length: 143  Bit Score: 161.76  E-value: 3.86e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 679 ANAVKGATQPANGGFTLDHERIAQLQRETAAVSALLAQVFTEDQTDDhfsdSPISSAPANTSESAACIEAGRVDEqvtss 758
Cdd:pfam15615   1 AEEVEEAAEAARKGISLDLDRIAAIQEETAAVSALLAEIFVEEETEE----ALTEIDEEPESEEAETALADKVDE----- 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1502718364 759 dipGLDLEHSAFLRLLMSRTEWSRSELEEAASDMELMLDGALEQINDMGFDRFNMPVTEGDDPVEINADILEELT 833
Cdd:pfam15615  72 ---GLDEAHSALLRLLLARAQWPREELEELARDHGLMPGGAIESINEWAFDEFDDLVIEDDDPIEINEDYLEELR 143
terB cd07176
tellurite resistance protein terB; This family contains uncharacterized bacterial proteins ...
 540-647 3.40e-22

tellurite resistance protein terB; This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.


Pssm-ID: 143580  Cd Length: 111  Bit Score: 92.29  E-value: 3.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 540 AASVTLDLASAVAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQ--IQLQQPPTLASLKKRLDP-LPIDAKRTI 616
Cdd:cd07176     1 FAEALVALAALVAAADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDklLALLRPEGLAALLKAAAKlLPPELRETA 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1502718364 617 ASFLAHLAQADGTVSPSEVKLLERVYKTLQL 647
Cdd:cd07176    81 FAVAVDIAAADGEVDPEERAVLEKLYRALGL 111
terB_like cd07177
tellurium resistance terB-like protein; This family consists of tellurium resistance terB ...
 547-645 2.04e-15

tellurium resistance terB-like protein; This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.


Pssm-ID: 143581 [Multi-domain]  Cd Length: 104  Bit Score: 72.78  E-value: 2.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 547 LASAVAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQIQLQQPPTLASLKKRLDPLP-IDAKRTIASFLAHLAQ 625
Cdd:cd07177     5 LLLAAAKADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAEAGDLAALAALLKELPdAELREALLAALWEVAL 84

                          90       100
                  ....*....|....*....|
gi 1502718364 626 ADGTVSPSEVKLLERVYKTL 645
Cdd:cd07177    85 ADGELDPEERALLRRLADAL 104
TerB COG3793
Tellurite resistance protein TerB [Inorganic ion transport and metabolism];
525-648 8.73e-13

Tellurite resistance protein TerB [Inorganic ion transport and metabolism];


Pssm-ID: 443007 [Multi-domain]  Cd Length: 128  Bit Score: 65.77  E-value: 8.73e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 525 TQPEDGALRATPAYNAASVTLDLASAVAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQIQLQQPPTLAS---- 600
Cdd:COG3793     1 AELTSEVKRFSPNREFLEALVAGCALVAAADGDIDPEERQKIAALIQSLPELAPFDADELIAAFEAIVDLLEFRAEalee 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1502718364 601 LKKRLDPLPiDAKRTIASFLAHLAQADGTVSPSEVKLLERVYKTLQLD 648
Cdd:COG3793    81 LAKLLKGDP-ELAELVLRLAVDVAAADGVFDPEEKAVLEEICQALGLD 127
TerB pfam05099
Tellurite resistance protein TerB; This family contains the TerB tellurite resistance proteins ...
 551-648 7.82e-05

Tellurite resistance protein TerB; This family contains the TerB tellurite resistance proteins from a a number of bacteria.


Pssm-ID: 428302  Cd Length: 118  Bit Score: 42.94  E-value: 7.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 551 VAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQIQLQQPPTL----ASLKKRLDPlpiDAKRTIASFLAHLAQA 626
Cdd:pfam05099  11 VARADGQVSPSERAALRELLASRFGLPPEEAKDLIELAEAAEQEAVDLyrftRQLKDHFDP---EQRQALIEALWEIAYA 87

                          90       100
                  ....*....|....*....|..
gi 1502718364 627 DGTVSPSEVKLLERVYKTLQLD 648
Cdd:pfam05099  88 DGELDPAEDAVIRRVAELLGLS 109
TerB2 COG4103
Tellurite resistance protein TerB [Inorganic ion transport and metabolism];
523-653 3.29e-04

Tellurite resistance protein TerB [Inorganic ion transport and metabolism];


Pssm-ID: 443279  Cd Length: 149  Bit Score: 41.77  E-value: 3.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 523 FVTQPEDGALRA-TPAYNAASvtldLASAVAAADGDTSHEEVALLSGHIDSWSHLSVAHRKRLKAHLQIQLQQPPTLAS- 600
Cdd:COG4103    12 LTRAPEPEALPEgDFELALAA----LLVEVARADGEVSEAERDAIRRLLARRFGLSPEEAAELIELAEELEAEAVDLYRf 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1502718364 601 ---LKKRLDPlpiDAKRTIASFLAHLAQADGTVSPSEVKLLERVyktlqldSQLLY 653
Cdd:COG4103    88 tsvINDHLDY---EERLQLIEALWEVAYADGELDEYEEALIRRI-------ADLLG 133
Phage_holin_3_6 pfam07332
Putative Actinobacterial Holin-X, holin superfamily III; Phage_holin_3_6 is a family of small ...
 10-62 2.88e-03

Putative Actinobacterial Holin-X, holin superfamily III; Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.


Pssm-ID: 462148  Cd Length: 113  Bit Score: 38.28  E-value: 2.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1502718364  10 AGNGILFGLVLVGGAIASVPkSAWIAIGIVAGVVAIVGGIGWLAAKRKARQAS 62
Cdd:pfam07332  44 ALFGLLFLLAALALALALVL-PLWLAALIVAAVLLVVAGVLALVGRKRLKRAS 95
terB_like_DjlA cd07316
N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins; ...
 547-641 3.46e-03

N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins; Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.


Pssm-ID: 143585  Cd Length: 106  Bit Score: 37.89  E-value: 3.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1502718364 547 LASAVAAADGDTSHEEVALLSGHIDSWShLSVAHRKRLKAHLQIQLQQP----PTLASLKKRLDPLPiDAKRTIASFLAH 622
Cdd:cd07316     5 LMGKLAKADGRVSEAEIQAARALMDQMG-LDAEARREAIRLFNEGKESDfgleEYARQFRRACGGRP-ELLLQLLEFLFQ 82

                          90
                  ....*....|....*....
gi 1502718364 623 LAQADGTVSPSEVKLLERV 641
Cdd:cd07316    83 IAYADGELSEAERELLRRI 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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