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Conserved domains on  [gi|1501550596|ref|WP_122116212|]
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MULTISPECIES: ASCH domain-containing protein [Parabacteroides]

Protein Classification

COG4933 superfamily protein( domain architecture ID 1905111)

COG4933 superfamily protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4933 super family cl42598
Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription];
2-34 2.88e-04

Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription];


The actual alignment was detected with superfamily member COG4933:

Pssm-ID: 443960  Cd Length: 137  Bit Score: 37.92  E-value: 2.88e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1501550596   2 NILTLSIKQKYFDEILAGKKTHEYREIRPTNAK 34
Cdd:COG4933     1 RKVLLSIKPEYAEKILSGEKKFELRKSIPKLDP 33
 
Name Accession Description Interval E-value
COG4933 COG4933
Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription];
2-34 2.88e-04

Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription];


Pssm-ID: 443960  Cd Length: 137  Bit Score: 37.92  E-value: 2.88e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1501550596   2 NILTLSIKQKYFDEILAGKKTHEYREIRPTNAK 34
Cdd:COG4933     1 RKVLLSIKPEYAEKILSGEKKFELRKSIPKLDP 33
ASCH smart01022
The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain; It is thought to ...
 6-26 4.65e-04

The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain; It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation.


Pssm-ID: 214979  Cd Length: 99  Bit Score: 36.93  E-value: 4.65e-04
                           10        20
                   ....*....|....*....|.
gi 1501550596    6 LSIKQKYFDEILAGKKTHEYR 26
Cdd:smart01022   1 LSFKDELADLILSGKKTATIR 21
ASCH pfam04266
ASCH domain; The ASCH domain adopts a beta-barrel fold similar to the pfam01472 domain. It is ...
 6-26 9.57e-03

ASCH domain; The ASCH domain adopts a beta-barrel fold similar to the pfam01472 domain. It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation.


Pssm-ID: 398105  Cd Length: 102  Bit Score: 33.50  E-value: 9.57e-03
                          10        20
                  ....*....|....*....|.
gi 1501550596   6 LSIKQKYFDEILAGKKTHEYR 26
Cdd:pfam04266   1 LSFGQEYADLILSGKKTAEIR 21
 
Name Accession Description Interval E-value
COG4933 COG4933
Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription];
2-34 2.88e-04

Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription];


Pssm-ID: 443960  Cd Length: 137  Bit Score: 37.92  E-value: 2.88e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1501550596   2 NILTLSIKQKYFDEILAGKKTHEYREIRPTNAK 34
Cdd:COG4933     1 RKVLLSIKPEYAEKILSGEKKFELRKSIPKLDP 33
ASCH smart01022
The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain; It is thought to ...
 6-26 4.65e-04

The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain; It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation.


Pssm-ID: 214979  Cd Length: 99  Bit Score: 36.93  E-value: 4.65e-04
                           10        20
                   ....*....|....*....|.
gi 1501550596    6 LSIKQKYFDEILAGKKTHEYR 26
Cdd:smart01022   1 LSFKDELADLILSGKKTATIR 21
ASCH pfam04266
ASCH domain; The ASCH domain adopts a beta-barrel fold similar to the pfam01472 domain. It is ...
 6-26 9.57e-03

ASCH domain; The ASCH domain adopts a beta-barrel fold similar to the pfam01472 domain. It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation.


Pssm-ID: 398105  Cd Length: 102  Bit Score: 33.50  E-value: 9.57e-03
                          10        20
                  ....*....|....*....|.
gi 1501550596   6 LSIKQKYFDEILAGKKTHEYR 26
Cdd:pfam04266   1 LSFGQEYADLILSGKKTAEIR 21
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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