|
Name |
Accession |
Description |
Interval |
E-value |
| relax_trwC |
TIGR02686 |
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) ... |
13-286 |
1.68e-118 |
|
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) region of TrwC, a relaxase-helicase that acts in plasmid R388 conjugation. The relaxase domain has DNA cleavage and strand transfer activities. Plasmid transfer protein TraI is also a member of this domain family. Members of this family on bacterial chromosomes typically are found near other genes typical of conjugative plasmids and appear to mark integrated plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 274258 [Multi-domain] Cd Length: 283 Bit Score: 364.47 E-value: 1.68e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 13 AADYFAN-DNYYTADEHAeaGVWGGEGARALGLEGQVERDQFEAILNGRLPDGEMVGQVEGR----RLGLDLTFSMPKSA 87
Cdd:TIGR02686 1 AADYYTDgDNYYLKDSDA--GRWLGKGAQELGLSGEVEKKQFEALLEGRLPDGTRLGRIEDRqskhRPGFDLTFSAPKSV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 88 SILALVSGDKRILDAHLAAVKSTMSQLVEKQFAENRNYDRSRsgEPQKTGNLVYALFAHDTSRALDPQGHIHAVVANLTR 167
Cdd:TIGR02686 79 SILALVGGDPRLIDAHDEAVKFTLEQLEKEAAAARVTQDGEI--EFEKTGNLVIALFRHDTSRANDPQLHTHAVVANMTR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 168 DPKGTWKAQWN---------GEIWKNNTTIGQFYHAAFRAQLQNLGYETEAAGKHGSFEIKGVPSSVIKEFSQRREDILT 238
Cdd:TIGR02686 157 RSDGKWRSLSSdkkgkhgfiEEIYKNQIYLGLLYRAKLANELKELGYQTRVYGKHGNFEIDGVPEEVIEAFSKRRQQIEE 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1473629812 239 KVEELGIASPQGQDRVTVNTRdPKLAVEDRAALVQAWQDRSAELGFDG 286
Cdd:TIGR02686 237 WVAERGWSLAKSRDTAALDTR-KKKTVHDREALREEWQQTAKELGFDP 283
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
1-969 |
2.19e-108 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 371.54 E-value: 2.19e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 1 MHSIASVRSSSGAADYFAN-DNYYTADEHAEAGV-WGGEGARALGLEGQ-VERDQFEAILNGRLPDGEMVGQVE----GR 73
Cdd:TIGR02760 1 MMSISPLRSAGDAAAYYLDeDNYYLKDSKSLNNTrWLGKGAEQLGLLGKpVEKEQFEALLSGTLPDGTQLGRIDkggiHH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 74 RLGLDLTFSMPKSASILALVSGDKRILDAHLAAVKSTMSQlVEKQFAENRNYDRSRSgEPQKTGNLVYALFAHDTSRALD 153
Cdd:TIGR02760 81 RPGFDLTFSAPKSVSILALVGGDKRLIEAHDKAVKIAVSE-MEKDAAQARQTVDGKT-EFINTRNLVFAMFRHKTSREND 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 154 PQGHIHAVVANLTRDPKGTWKA-------------QWNGEIWKNNTTIGQFYHAAFRAQLQNLGYETEAAGKhGSFEIKG 220
Cdd:TIGR02760 159 PQLHTHAVVQNMTHDSDGKWRSlasdmkgqkgvieGFRERIYNHQIYYGLLYRSKLAKKVEELGYQTASVGK-GQFEIQG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 221 VPSSVIKEFSQRREDILTKVEELGIASPQGQDRVTVNTRDPKLAVEDrAALVQAWQDRSAELGFDGQALIAEARARAEVQ 300
Cdd:TIGR02760 238 VPEQVLTAFSKRRQQIDELVDEKGWSSAKARDIAALDTRKDKTYIDD-ETLMEKWQQECKDMGFDPHALVASSYKPENIV 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 301 ARPTfretataalgeistrigaalrtpsplavsGPaalflpaDTIKAQHATASAIRHLSEREAAFSPQAILSAALGFQIK 380
Cdd:TIGR02760 317 ARFY-----------------------------GP-------SQIDAQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTA 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 381 GLEGGAVVE---RIGELIRDGHLIPgkTDRLDGHFdlvTTPAALAMEQQILDRIDAGAGKGRAFMPPEqamaRLQEAARQ 457
Cdd:TIGR02760 361 GNKIIDEIDikkAIDELIANGQLIP--LFTQKGLF---TTQTMLTNEKELIARTEGGKGALRVIVSKQ----KLSEFALS 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 458 LGQARAGVDnwqlnegqlaagvaILSGTDRFLNVQGVAGAGKSTLLGALDKVLSDDGVKLIGLafqnkmVADLRgggsqg 537
Cdd:TIGR02760 432 PSNKDAVST--------------LFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQII------TAGSL------ 485
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 538 mSAEQMR-EAGIEAYTIAKFLSTYGRAAAAGSGERFEAAKAALAN-TVIITDESSMVSSRDMLRLTALAEQLDlAKAPFM 615
Cdd:TIGR02760 486 -SAQELRqKIPRLASTFITWVKNLFNDDQDHTVQGLLDKSSPFSNkDIFVVDEANKLSNNELLKLIDKAEQHN-SKLILL 563
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 616 GDRQQLSAIEQGKMFAVSQAAGQATVRMDENIRQKNSPLLlavaglsneghaslaldllaaHGRVIEAGPDHVARAadiW 695
Cdd:TIGR02760 564 NDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEI---------------------SEAVDKLRVDYIASA---W 619
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 696 LSLSPDKREATAILTAGRdDRAEINARVQVGLLKEGALSGPGVTLTTLQSANTTREELRFASTYRVGQVFDarmDVRELG 775
Cdd:TIGR02760 620 LDLTPDRQNSQVLATTHR-EQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNAAHYKQGMVIR---FWQKGK 695
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 776 LKRGEYEVREI-RKDGKVVLE-AGGRRKVIDPDRLDPDHRfdRIGLYEQRELKIHDGETVFWRDKDGARDIAKSTYATVL 853
Cdd:TIGR02760 696 IPHDDYVVTNVnKHNNTLTLKdAQGKTQKFKPSSLKDLER--PFSVYRPEQLEVAAGERLQVTGNHFHSRVRNGELLTVS 773
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 854 ECRPEGVRVELADKRQLVLAPGDPMLRRLDLGYALNAHMAQGMTKpeaiEVISSSQRNLATQRTQNVLNtRATEDMMVVT 933
Cdd:TIGR02760 774 SINNEGITLITEDGQTLHLPHGALEDAHLDYGYVLTPYHTQPDDA----KVFLGVKQYALSKALLNSLN-RSASRVDLFT 848
|
970 980 990
....*....|....*....|....*....|....*.
gi 1473629812 934 NNLESLKQQLDRTPGnKTSALEVagkveVEPRHHNP 969
Cdd:TIGR02760 849 DLDEKAQRYLEKTRG-IPSAIVV-----VDQKQHLP 878
|
|
| MobF |
NF041492 |
MobF family relaxase; |
1-278 |
4.46e-100 |
|
MobF family relaxase;
Pssm-ID: 469380 [Multi-domain] Cd Length: 288 Bit Score: 316.17 E-value: 4.46e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 1 MHSIASVRSSSGAADYFAN---DNYYTADEHAEAGVWGGEGARALGLE-GQVERDQFEAILNGRLPDGE-MVGQVEG--- 72
Cdd:NF041492 1 MLSIARIGSAGGAARYYTEkdlDNYYSEDGGTPAGRWFGKGAEALGLSgGAVDGERFKALLDGRLPDGErLRRRRKGagr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 73 RRLGLDLTFSMPKSASILALVSGDKRILDAHLAAVKSTMSqLVEKQFAENRNYDRSRSG-EPQKTGNLVYALFAHDTSRA 151
Cdd:NF041492 81 HRPGYDLTFSAPKSVSLLALVGGDKRLIEAHDEAVKEALE-YLEERLAQTRVTVDGKGRtSLEKTGNLVAALFRHDTSRA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 152 LDPQGHIHAVVANLTRDPKGTWKAQWNGEIWKNNTTIGQFYHAAFRAQLQNLGYETEAAgKHGSFEIKGVPSSVIKEFSQ 231
Cdd:NF041492 160 GDPQLHTHAVVMNMTQRPDGKWRSLDNEELYKNQKALGAIYQAELAEELQALGYEIRET-KNGQFEIAGVPREQIEAFSK 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1473629812 232 RREDILTKVEELGI--ASPQGQDRVTVNTRDPKLAVEDRAALVQAWQDR 278
Cdd:NF041492 239 RSQQIEEWLGENPAtlASAALRQIAALDTRKAKEADVDPEELEAEWREE 287
|
|
| TrwC |
pfam08751 |
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative ... |
10-281 |
3.37e-93 |
|
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Pssm-ID: 430190 [Multi-domain] Cd Length: 279 Bit Score: 297.60 E-value: 3.37e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 10 SSGAADYFAN-DNYYTADEHAeAGVWGGEGARALGLEGQVERDQFEAILNGRLPD-GEMVGQ----VEGRRLGLDLTFSM 83
Cdd:pfam08751 1 AGDAYAYYTRqDDYYTEGGEP-PGRWLGKGAAALGLSGEVTEEQFEALLEGRHPDtGERLGRrrprGRKHRAGFDLTFSA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 84 PKSASILALVSGDKRILDAHLAAVKSTMsQLVEKQFAENRNYDRSRSgEPQKTGNLVYALFAHDTSRALDPQGHIHAVVA 163
Cdd:pfam08751 80 PKSVSLLAAVGGDERIEAAHRAAVAEAL-AWLEKHAAQTRVGKDGGV-EQVDTGGLVAAAFRHDTSRAGDPQLHTHVVVA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 164 NLTRDPKGTWKAQWNGEIWKNNTTIGQFYHAAFRAQLQNLGYETEAAGKHGSFEIKGVPSSVIKEFSQRREDILTKVEEL 243
Cdd:pfam08751 158 NVTQREDGKWRALDSRGLYKAQVAAGAVYRAELADELRRLGYEIEERGKRGVFEIAGVPEELIEAFSKRRAQIEAELAEL 237
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1473629812 244 ----GIASPQGQDRVTVNTRDPKLAVEDRAALVQAWQDRSAE 281
Cdd:pfam08751 238 gathGRAPPAARQIAALETRPAKHEPRSLAELRARWREEAAE 279
|
|
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
3-921 |
7.92e-73 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 264.73 E-value: 7.92e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 3 SIASVRSSSGAADYFAN-DNYYTADEHAEagVWGGEGARALGLEGQVERDQFEAILNGRLPDGEMVG-QVEGR---RLGL 77
Cdd:PRK13709 2 SIAQVKSAGSAGNYYTDkDNYYVLGSMGE--RWAGEGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSrMQDGSnkhRPGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 78 DLTFSMPKSASILALVSGDKRILDAHLAAVKSTMSQLveKQFAENRNYDRSRSgEPQKTGNLVYALFAHDTSRALDPQGH 157
Cdd:PRK13709 80 DLTFSAPKSVSMMAMLGGDKRLIEAHNQAVDFAVRQV--EALASTRVMTDGQS-ETVLTGNLVMALFNHDTSRDQDPQLH 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 158 IHAVVANLTRDpKGTWKAQWNGEI---------WKNNTTIGQFYHAAFRAQLQNLGYETEAAGKHGSFEIKGVPssvIKE 228
Cdd:PRK13709 157 THAVVANVTQH-NGKWKTLSSDKVgktgfienvYANQIAFGKIYREALKEDVEALGYETEVVGKHGMWEMKGVP---VEA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 229 FSQRREDILTKVEElgIASPQGQDRVTVNTRDPKLAVeDRAALVQAWQDRSAELGFDGQALIAEARARAEVQARPtfret 308
Cdd:PRK13709 233 FSSRSQEIREAVGE--DASLKSRDVAALDTRKSKQHV-DPEVRMAEWMQTLKETGFDIRAYREAADQRAEIRTQA----- 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 309 ataalgeistrigaalrtPSPLAVSGPaalflpadtiKAQHATASAIRHLSEREAAFSPQAILSAALGfQIKGLEGgaVV 388
Cdd:PRK13709 305 ------------------PGPASQDGP----------DIQQAVTQAIAGLSDRKVQFTYTDLLARTVG-ILPPENG--VI 353
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 389 ER----IGELIRDGHLIPgktdrLDGHFDLVTTPAAL-------AMEQQILDRidagagkGRAFMPPEQAMAR---LQEA 454
Cdd:PRK13709 354 ERaragIDEAISREQLIP-----LDREKGLFTSGIHVldelsvrALSRDIMKQ-------NRVTVHPEKSVPRtagYSDA 421
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 455 ARQLGQARagvdnwqlnegqlaAGVAILSGtdrflnvQGvagagkstllgaldkvlsddgvkliGLAFQNKMVADLrggg 534
Cdd:PRK13709 422 VSVLAQDR--------------PSLAIVSG-------QG-------------------------GAAGQRERVAEL---- 451
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 535 sQGMSAEQMREAGIEAYTIAKFLSTYGRAAAAG---SGERFEAAKAALA--NTVIItDESSMVSSRDMLRLT--ALAEQL 607
Cdd:PRK13709 452 -VMMAREQGREVQILAADRRSQMNLKQDERLSGeliTGRRQLQEGMAFTpgSTLIV-DQAEKLSLKETLTLLdgAARHNV 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 608 DLakapFMGDRQQLSAIeqGKMFAVSQAAGQATVRMdenirqKNSPLLLAvaglsneghaslaldllaahgRVIEAG--P 685
Cdd:PRK13709 530 QV----LILDSGQRTGT--GSALMVLKDAGVNTYRW------QGGEQRPA---------------------TVISEPdkN 576
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 686 DHVARAADIWLSLSPDKREATAILTaGRDDRAEINARVQVGLLKEGALSGPGVTLTTLQSANTTREELRFASTYRVGQVF 765
Cdd:PRK13709 577 VRYARLAGDFAASVKAGEESVAQVS-GVREQAILTGLIRSALKTQGVLGRPEVTITALSPVWLDSKSRYLRDMYRPGMVM 655
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 766 DarmDVRELGLKRGEYEVREIRKDGK--VVLEAGGRRKVIDPDRLDPDHRfdrigLYEQRELKIHDGETVFWRDKDGARD 843
Cdd:PRK13709 656 E---QWNPETRSHDRYVIDRVTAQSHslTLRDAQGETQVVKISSLDSSWS-----LFRPEKMPVADGERLRVLGKIPGLR 727
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 844 IAKSTYATVLECRPEGVRVELAD-KRQLVLAPGDPMLRRLDLGYALNAhmAQGMTKPEAIEVISS-SQRNLATQrTQNVL 921
Cdd:PRK13709 728 LKGGDRLQVTSVSEDGLTVVVPGrAEPATLPVDDSPFTALKLEHGWVE--TPGHSVSDSATVFASvTQRAMDNA-TLNGL 804
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
469-684 |
1.27e-40 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 148.10 E-value: 1.27e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 469 QLNEGQLAAGVAILSGTDRFLNVQGVAGAGKSTLLGALDKVLSDDGVKLIGLAFQNKMVADLRgggsqgmsaeqmREAGI 548
Cdd:pfam13604 1 TLNAEQAAAVRALLTSGDRVAVLVGPAGTGKTTALKALREAWEAAGYRVIGLAPTGRAAKVLG------------EELGI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 549 EAYTIAKFLSTYGRAAAAGSGerfeaakaalanTVIITDESSMVSSRDMLRLTALAEQLDlAKAPFMGDRQQLSAIEQGK 628
Cdd:pfam13604 69 PADTIAKLLHRLGGRAGLDPG------------TLLIVDEAGMVGTRQMARLLKLAEDAG-ARVILVGDPRQLPSVEAGG 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1473629812 629 MFAVSQAAGQATVRMDENIRQKNSPLLLAVAGLSnEGHASLALDLLAAHGRVIEAG 684
Cdd:pfam13604 136 AFRDLLAAGIGTAELTEIVRQRDPWQRAASLALR-DGDPAEALDALADRGRIHEGD 190
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
342-955 |
7.97e-37 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 146.27 E-value: 7.97e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 342 ADTIKAQHAT--ASAIRHLSEREAAFSPQAILSAALGFQIkglegGAVVERIGELIRDGHLIpgktdrLDGHFdlvTTPA 419
Cdd:COG0507 20 ADFIARDDPIraAALLSRAAGEGHTFPLEDLAAARLLGVA-----EDIEAALAALVESGPLV------LDGRR---YLTR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 420 ALAMEQQILDRIDAGAgkgRAFMPPEQAMARLQEAARQLGQaragvdnwQLNEGQLAAgVAILSGTDRFLNVQGVAGAGK 499
Cdd:COG0507 86 LLEAEQRLARRLRRLA---RPALDEADVEAALAALEPRAGI--------TLSDEQREA-VALALTTRRVSVLTGGAGTGK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 500 STLLGALDKVLSDDGVKLIGLAFQNKmvadlrgggsqgmSAEQMREA-GIEAYTIAKFLstygRAAAAGSGERFEAAKAA 578
Cdd:COG0507 154 TTTLRALLAALEALGLRVALAAPTGK-------------AAKRLSEStGIEARTIHRLL----GLRPDSGRFRHNRDNPL 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 579 LANTVIITDESSMVSSRDMLRLTALAEQLDlAKAPFMGDRQQLSAIEQGKMFAVSQAAGQ-ATVRMDENIRQKNSPLLLA 657
Cdd:COG0507 217 TPADLLVVDEASMVDTRLMAALLEALPRAG-ARLILVGDPDQLPSVGAGAVLRDLIESGTvPVVELTEVYRQADDSRIIE 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 658 VAGLSNEGHASLALDLLAAHGRVIEAG--PDHVARAADIWlSLSPDKREATAILTAGRDDRAEINARVQVGLLKEGALSg 735
Cdd:COG0507 296 LAHAIREGDAPEALNARYADVVFVEAEdaEEAAEAIVELY-ADRPAGGEDIQVLAPTNAGVDALNQAIREALNPAGELE- 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 736 pgvtlttlqsanttreelrfastyrvgqvfdarmdvrelglkrgeyevREIRKDGKVVLEAGgrRKVI----DPDRldpd 811
Cdd:COG0507 374 ------------------------------------------------RELAEDGELELYVG--DRVMftrnDYDL---- 399
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 812 hrfdriGLYeqrelkihDGETvfwrdkdgardiakstyATVLECRPEG--VRVELADKRQLVLAPGDpmLRRLDLGYALN 889
Cdd:COG0507 400 ------GVF--------NGDI-----------------GTVLSIDEDEgrLTVRFDGREIVTYDPSE--LDQLELAYAIT 446
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1473629812 890 AHMAQGMTKPEAIEVISSSQRNLATQRTQNVLNTRATEDMMVVTNNlESLKQQLdRTPGNKTSALE 955
Cdd:COG0507 447 VHKSQGSTFDRVILVLPSEHSPLLSRELLYTALTRARELLTLVGDR-DALARAV-RRDTARATGLA 510
|
|
| PRK14712 |
PRK14712 |
conjugal transfer nickase/helicase TraI; Provisional |
136-412 |
2.53e-24 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237796 [Multi-domain] Cd Length: 1623 Bit Score: 110.72 E-value: 2.53e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 136 TGNLVYALFAHDTSRALDPQGHIHAVVANLTRDpKGTWKAQWNGEIWK---------NNTTIGQFYHAAFRAQLQNLGYE 206
Cdd:PRK14712 3 TGNLVMALFNHDTSRDQEPQLHTHAVVANVTQH-NGEWKTLSSDKVGKtgfienvyaNQIAFGRLYREKLKEQVEALGYE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 207 TEAAGKHGSFEIKGVPssvIKEFSQRREDILTKVEElgIASPQGQDRVTVNTRDPKLAVEDRAALVQaWQDRSAELGFDG 286
Cdd:PRK14712 82 TEVVGKHGMWEMPGVP---VEAFSGRSQTIREAVGE--DASLKSRDVAALDTRKSKQHVDPEVRMAE-WMQTLKETGFDI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 287 QALIAEARARAEVQArptfretataalgeistrigaalRTPSPLAVSGPaalflpadtiKAQHATASAIRHLSEREAAFS 366
Cdd:PRK14712 156 RAYRDAAEQRAYTRT-----------------------QTPGPASQDGP----------DVQQAVTQAIAGLSERKVQFM 202
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1473629812 367 PQAILSAALGfqIKGLEGGaVVER----IGELIRDGHLIPgkTDRLDGHF 412
Cdd:PRK14712 203 YTDLLARTVG--ILPPENG-VIERaragIDEAISREQLIP--LDREKGLF 247
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
473-646 |
6.55e-19 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 84.53 E-value: 6.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 473 GQLAAGVAILSgtDRFLNVQGVAGAGKSTLLGALDKVLSDDGVKLIGLAfqnkmvadlrgggSQGMSAEQMREA-GIEAY 551
Cdd:cd17933 1 EQKAAVRLVLR--NRVSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAA-------------PTGKAAKRLSEStGIEAS 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 552 TIAKFLstygRAAAAGSGERFEAAKAaLANTVIITDESSMVSSRDMLRLTALAEqlDLAKAPFMGDRQQLSAIEQGKMFA 631
Cdd:cd17933 66 TIHRLL----GINPGGGGFYYNEENP-LDADLLIVDEASMVDTRLMAALLSAIP--AGARLILVGDPDQLPSVGAGNVLR 138
|
170
....*....|....*.
gi 1473629812 632 -VSQAAGQATVRMDEN 646
Cdd:cd17933 139 dLIASKGVPTVELTEV 154
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| relax_trwC |
TIGR02686 |
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) ... |
13-286 |
1.68e-118 |
|
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) region of TrwC, a relaxase-helicase that acts in plasmid R388 conjugation. The relaxase domain has DNA cleavage and strand transfer activities. Plasmid transfer protein TraI is also a member of this domain family. Members of this family on bacterial chromosomes typically are found near other genes typical of conjugative plasmids and appear to mark integrated plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 274258 [Multi-domain] Cd Length: 283 Bit Score: 364.47 E-value: 1.68e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 13 AADYFAN-DNYYTADEHAeaGVWGGEGARALGLEGQVERDQFEAILNGRLPDGEMVGQVEGR----RLGLDLTFSMPKSA 87
Cdd:TIGR02686 1 AADYYTDgDNYYLKDSDA--GRWLGKGAQELGLSGEVEKKQFEALLEGRLPDGTRLGRIEDRqskhRPGFDLTFSAPKSV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 88 SILALVSGDKRILDAHLAAVKSTMSQLVEKQFAENRNYDRSRsgEPQKTGNLVYALFAHDTSRALDPQGHIHAVVANLTR 167
Cdd:TIGR02686 79 SILALVGGDPRLIDAHDEAVKFTLEQLEKEAAAARVTQDGEI--EFEKTGNLVIALFRHDTSRANDPQLHTHAVVANMTR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 168 DPKGTWKAQWN---------GEIWKNNTTIGQFYHAAFRAQLQNLGYETEAAGKHGSFEIKGVPSSVIKEFSQRREDILT 238
Cdd:TIGR02686 157 RSDGKWRSLSSdkkgkhgfiEEIYKNQIYLGLLYRAKLANELKELGYQTRVYGKHGNFEIDGVPEEVIEAFSKRRQQIEE 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1473629812 239 KVEELGIASPQGQDRVTVNTRdPKLAVEDRAALVQAWQDRSAELGFDG 286
Cdd:TIGR02686 237 WVAERGWSLAKSRDTAALDTR-KKKTVHDREALREEWQQTAKELGFDP 283
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
1-969 |
2.19e-108 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 371.54 E-value: 2.19e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 1 MHSIASVRSSSGAADYFAN-DNYYTADEHAEAGV-WGGEGARALGLEGQ-VERDQFEAILNGRLPDGEMVGQVE----GR 73
Cdd:TIGR02760 1 MMSISPLRSAGDAAAYYLDeDNYYLKDSKSLNNTrWLGKGAEQLGLLGKpVEKEQFEALLSGTLPDGTQLGRIDkggiHH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 74 RLGLDLTFSMPKSASILALVSGDKRILDAHLAAVKSTMSQlVEKQFAENRNYDRSRSgEPQKTGNLVYALFAHDTSRALD 153
Cdd:TIGR02760 81 RPGFDLTFSAPKSVSILALVGGDKRLIEAHDKAVKIAVSE-MEKDAAQARQTVDGKT-EFINTRNLVFAMFRHKTSREND 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 154 PQGHIHAVVANLTRDPKGTWKA-------------QWNGEIWKNNTTIGQFYHAAFRAQLQNLGYETEAAGKhGSFEIKG 220
Cdd:TIGR02760 159 PQLHTHAVVQNMTHDSDGKWRSlasdmkgqkgvieGFRERIYNHQIYYGLLYRSKLAKKVEELGYQTASVGK-GQFEIQG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 221 VPSSVIKEFSQRREDILTKVEELGIASPQGQDRVTVNTRDPKLAVEDrAALVQAWQDRSAELGFDGQALIAEARARAEVQ 300
Cdd:TIGR02760 238 VPEQVLTAFSKRRQQIDELVDEKGWSSAKARDIAALDTRKDKTYIDD-ETLMEKWQQECKDMGFDPHALVASSYKPENIV 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 301 ARPTfretataalgeistrigaalrtpsplavsGPaalflpaDTIKAQHATASAIRHLSEREAAFSPQAILSAALGFQIK 380
Cdd:TIGR02760 317 ARFY-----------------------------GP-------SQIDAQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTA 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 381 GLEGGAVVE---RIGELIRDGHLIPgkTDRLDGHFdlvTTPAALAMEQQILDRIDAGAGKGRAFMPPEqamaRLQEAARQ 457
Cdd:TIGR02760 361 GNKIIDEIDikkAIDELIANGQLIP--LFTQKGLF---TTQTMLTNEKELIARTEGGKGALRVIVSKQ----KLSEFALS 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 458 LGQARAGVDnwqlnegqlaagvaILSGTDRFLNVQGVAGAGKSTLLGALDKVLSDDGVKLIGLafqnkmVADLRgggsqg 537
Cdd:TIGR02760 432 PSNKDAVST--------------LFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQII------TAGSL------ 485
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 538 mSAEQMR-EAGIEAYTIAKFLSTYGRAAAAGSGERFEAAKAALAN-TVIITDESSMVSSRDMLRLTALAEQLDlAKAPFM 615
Cdd:TIGR02760 486 -SAQELRqKIPRLASTFITWVKNLFNDDQDHTVQGLLDKSSPFSNkDIFVVDEANKLSNNELLKLIDKAEQHN-SKLILL 563
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 616 GDRQQLSAIEQGKMFAVSQAAGQATVRMDENIRQKNSPLLlavaglsneghaslaldllaaHGRVIEAGPDHVARAadiW 695
Cdd:TIGR02760 564 NDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEI---------------------SEAVDKLRVDYIASA---W 619
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 696 LSLSPDKREATAILTAGRdDRAEINARVQVGLLKEGALSGPGVTLTTLQSANTTREELRFASTYRVGQVFDarmDVRELG 775
Cdd:TIGR02760 620 LDLTPDRQNSQVLATTHR-EQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNAAHYKQGMVIR---FWQKGK 695
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 776 LKRGEYEVREI-RKDGKVVLE-AGGRRKVIDPDRLDPDHRfdRIGLYEQRELKIHDGETVFWRDKDGARDIAKSTYATVL 853
Cdd:TIGR02760 696 IPHDDYVVTNVnKHNNTLTLKdAQGKTQKFKPSSLKDLER--PFSVYRPEQLEVAAGERLQVTGNHFHSRVRNGELLTVS 773
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 854 ECRPEGVRVELADKRQLVLAPGDPMLRRLDLGYALNAHMAQGMTKpeaiEVISSSQRNLATQRTQNVLNtRATEDMMVVT 933
Cdd:TIGR02760 774 SINNEGITLITEDGQTLHLPHGALEDAHLDYGYVLTPYHTQPDDA----KVFLGVKQYALSKALLNSLN-RSASRVDLFT 848
|
970 980 990
....*....|....*....|....*....|....*.
gi 1473629812 934 NNLESLKQQLDRTPGnKTSALEVagkveVEPRHHNP 969
Cdd:TIGR02760 849 DLDEKAQRYLEKTRG-IPSAIVV-----VDQKQHLP 878
|
|
| MobF |
NF041492 |
MobF family relaxase; |
1-278 |
4.46e-100 |
|
MobF family relaxase;
Pssm-ID: 469380 [Multi-domain] Cd Length: 288 Bit Score: 316.17 E-value: 4.46e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 1 MHSIASVRSSSGAADYFAN---DNYYTADEHAEAGVWGGEGARALGLE-GQVERDQFEAILNGRLPDGE-MVGQVEG--- 72
Cdd:NF041492 1 MLSIARIGSAGGAARYYTEkdlDNYYSEDGGTPAGRWFGKGAEALGLSgGAVDGERFKALLDGRLPDGErLRRRRKGagr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 73 RRLGLDLTFSMPKSASILALVSGDKRILDAHLAAVKSTMSqLVEKQFAENRNYDRSRSG-EPQKTGNLVYALFAHDTSRA 151
Cdd:NF041492 81 HRPGYDLTFSAPKSVSLLALVGGDKRLIEAHDEAVKEALE-YLEERLAQTRVTVDGKGRtSLEKTGNLVAALFRHDTSRA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 152 LDPQGHIHAVVANLTRDPKGTWKAQWNGEIWKNNTTIGQFYHAAFRAQLQNLGYETEAAgKHGSFEIKGVPSSVIKEFSQ 231
Cdd:NF041492 160 GDPQLHTHAVVMNMTQRPDGKWRSLDNEELYKNQKALGAIYQAELAEELQALGYEIRET-KNGQFEIAGVPREQIEAFSK 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1473629812 232 RREDILTKVEELGI--ASPQGQDRVTVNTRDPKLAVEDRAALVQAWQDR 278
Cdd:NF041492 239 RSQQIEEWLGENPAtlASAALRQIAALDTRKAKEADVDPEELEAEWREE 287
|
|
| TrwC |
pfam08751 |
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative ... |
10-281 |
3.37e-93 |
|
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Pssm-ID: 430190 [Multi-domain] Cd Length: 279 Bit Score: 297.60 E-value: 3.37e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 10 SSGAADYFAN-DNYYTADEHAeAGVWGGEGARALGLEGQVERDQFEAILNGRLPD-GEMVGQ----VEGRRLGLDLTFSM 83
Cdd:pfam08751 1 AGDAYAYYTRqDDYYTEGGEP-PGRWLGKGAAALGLSGEVTEEQFEALLEGRHPDtGERLGRrrprGRKHRAGFDLTFSA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 84 PKSASILALVSGDKRILDAHLAAVKSTMsQLVEKQFAENRNYDRSRSgEPQKTGNLVYALFAHDTSRALDPQGHIHAVVA 163
Cdd:pfam08751 80 PKSVSLLAAVGGDERIEAAHRAAVAEAL-AWLEKHAAQTRVGKDGGV-EQVDTGGLVAAAFRHDTSRAGDPQLHTHVVVA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 164 NLTRDPKGTWKAQWNGEIWKNNTTIGQFYHAAFRAQLQNLGYETEAAGKHGSFEIKGVPSSVIKEFSQRREDILTKVEEL 243
Cdd:pfam08751 158 NVTQREDGKWRALDSRGLYKAQVAAGAVYRAELADELRRLGYEIEERGKRGVFEIAGVPEELIEAFSKRRAQIEAELAEL 237
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1473629812 244 ----GIASPQGQDRVTVNTRDPKLAVEDRAALVQAWQDRSAE 281
Cdd:pfam08751 238 gathGRAPPAARQIAALETRPAKHEPRSLAELRARWREEAAE 279
|
|
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
3-921 |
7.92e-73 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 264.73 E-value: 7.92e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 3 SIASVRSSSGAADYFAN-DNYYTADEHAEagVWGGEGARALGLEGQVERDQFEAILNGRLPDGEMVG-QVEGR---RLGL 77
Cdd:PRK13709 2 SIAQVKSAGSAGNYYTDkDNYYVLGSMGE--RWAGEGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSrMQDGSnkhRPGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 78 DLTFSMPKSASILALVSGDKRILDAHLAAVKSTMSQLveKQFAENRNYDRSRSgEPQKTGNLVYALFAHDTSRALDPQGH 157
Cdd:PRK13709 80 DLTFSAPKSVSMMAMLGGDKRLIEAHNQAVDFAVRQV--EALASTRVMTDGQS-ETVLTGNLVMALFNHDTSRDQDPQLH 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 158 IHAVVANLTRDpKGTWKAQWNGEI---------WKNNTTIGQFYHAAFRAQLQNLGYETEAAGKHGSFEIKGVPssvIKE 228
Cdd:PRK13709 157 THAVVANVTQH-NGKWKTLSSDKVgktgfienvYANQIAFGKIYREALKEDVEALGYETEVVGKHGMWEMKGVP---VEA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 229 FSQRREDILTKVEElgIASPQGQDRVTVNTRDPKLAVeDRAALVQAWQDRSAELGFDGQALIAEARARAEVQARPtfret 308
Cdd:PRK13709 233 FSSRSQEIREAVGE--DASLKSRDVAALDTRKSKQHV-DPEVRMAEWMQTLKETGFDIRAYREAADQRAEIRTQA----- 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 309 ataalgeistrigaalrtPSPLAVSGPaalflpadtiKAQHATASAIRHLSEREAAFSPQAILSAALGfQIKGLEGgaVV 388
Cdd:PRK13709 305 ------------------PGPASQDGP----------DIQQAVTQAIAGLSDRKVQFTYTDLLARTVG-ILPPENG--VI 353
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 389 ER----IGELIRDGHLIPgktdrLDGHFDLVTTPAAL-------AMEQQILDRidagagkGRAFMPPEQAMAR---LQEA 454
Cdd:PRK13709 354 ERaragIDEAISREQLIP-----LDREKGLFTSGIHVldelsvrALSRDIMKQ-------NRVTVHPEKSVPRtagYSDA 421
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 455 ARQLGQARagvdnwqlnegqlaAGVAILSGtdrflnvQGvagagkstllgaldkvlsddgvkliGLAFQNKMVADLrggg 534
Cdd:PRK13709 422 VSVLAQDR--------------PSLAIVSG-------QG-------------------------GAAGQRERVAEL---- 451
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 535 sQGMSAEQMREAGIEAYTIAKFLSTYGRAAAAG---SGERFEAAKAALA--NTVIItDESSMVSSRDMLRLT--ALAEQL 607
Cdd:PRK13709 452 -VMMAREQGREVQILAADRRSQMNLKQDERLSGeliTGRRQLQEGMAFTpgSTLIV-DQAEKLSLKETLTLLdgAARHNV 529
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 608 DLakapFMGDRQQLSAIeqGKMFAVSQAAGQATVRMdenirqKNSPLLLAvaglsneghaslaldllaahgRVIEAG--P 685
Cdd:PRK13709 530 QV----LILDSGQRTGT--GSALMVLKDAGVNTYRW------QGGEQRPA---------------------TVISEPdkN 576
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 686 DHVARAADIWLSLSPDKREATAILTaGRDDRAEINARVQVGLLKEGALSGPGVTLTTLQSANTTREELRFASTYRVGQVF 765
Cdd:PRK13709 577 VRYARLAGDFAASVKAGEESVAQVS-GVREQAILTGLIRSALKTQGVLGRPEVTITALSPVWLDSKSRYLRDMYRPGMVM 655
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 766 DarmDVRELGLKRGEYEVREIRKDGK--VVLEAGGRRKVIDPDRLDPDHRfdrigLYEQRELKIHDGETVFWRDKDGARD 843
Cdd:PRK13709 656 E---QWNPETRSHDRYVIDRVTAQSHslTLRDAQGETQVVKISSLDSSWS-----LFRPEKMPVADGERLRVLGKIPGLR 727
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 844 IAKSTYATVLECRPEGVRVELAD-KRQLVLAPGDPMLRRLDLGYALNAhmAQGMTKPEAIEVISS-SQRNLATQrTQNVL 921
Cdd:PRK13709 728 LKGGDRLQVTSVSEDGLTVVVPGrAEPATLPVDDSPFTALKLEHGWVE--TPGHSVSDSATVFASvTQRAMDNA-TLNGL 804
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
336-976 |
6.41e-50 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 193.58 E-value: 6.41e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 336 AALFLPADTIKAQHATASAIRHLSEREAAFSPQAILSAALGFQIKGLEGGAVVERIGELIRDGHLIPGKTDRLDGHFDLV 415
Cdd:TIGR02760 899 HALEAKAKDGKNSIALQYALEKVSEKEAAFKQKELVTEAYVFAFEETGFAIKAAEIAAALKNRPKLYRLLSAEYGDGTRW 978
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 416 TTPAALAMEQQILDRIDAGAGKGRAFMPPEQAMARLQEAARqlgqaragvdnwqLNEGQLAAGVAILSGTDRFLNVQGVA 495
Cdd:TIGR02760 979 TTRAALRTETSILLHILPGKETVTPLATRAQVFLNLELLER-------------LTHGQKQAIHLIISTKDRFVAVQGLA 1045
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 496 GAGKSTLLGALDKVLSDDG----VKLIGLAFQNKMVadlrgggsqgmsaEQMREAGIEAYTIAKFLSTYGRAAAAGSGER 571
Cdd:TIGR02760 1046 GVGKTTMLESRYKPVLQAFeseqLQVIGLAPTHEAV-------------GELKSAGVQAQTLDSFLTDISLYRNSGGDFR 1112
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 572 feaakaalaNTVIITDESSMVSSRDMLRLTALAEQLDlAKAPFMGDRQQLSAIEQGKMFAVSQAAG-QATVRMDENIRQK 650
Cdd:TIGR02760 1113 ---------NTLFILDESSMVSNFQLTHATELVQKSG-SRAVSLGDIAQLQSLAAGKPFELAITFDiIDTAIMKEIVRQN 1182
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 651 NSPLLLAVA-------------GLSNEGHASLALDLLAAH-------------------------GRVIEAGPDHVARA- 691
Cdd:TIGR02760 1183 NSAELKAAHnsldkrsnpkaleLLKNQNPLQHELMQNAAMpeiasdeqglqkhdlaklavntekpKKAQPDATVTLYREi 1262
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 692 ADIWLSLSPDKREATAILTAGRDDRAEINARVQVGLLKEGALSGPGVTLTTLQSANTTREELRFASTYRVGQVfdarmdv 771
Cdd:TIGR02760 1263 VKDYLSRTPEFRENTLIIAHTNNDRTGIYPFIREGLIKQKELSKQQVTVPRLRSVNISSPELKTMMPFEKGAV------- 1335
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 772 reLGLKRGEY-EVREI-RKDGKVVLEAG--GRRKVIDPDRLdpDHRFdrIGLYEQRELKIHDGETVFWRDKDGARDIAKS 847
Cdd:TIGR02760 1336 --LRLKKDAYlTIADIdREHGKLTVADIktGSERDILPRQL--DHTF--TSLYSDSELPLAKGDKIRLRATDKNRGIKAN 1409
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 848 TYATVLECRPEGVRVELADKRQLVLAPGDPMLRRLDLGYALNAHMAQGMTKPEAIEVIsSSQRNLATQRTQNVLNTRATE 927
Cdd:TIGR02760 1410 EVYTVTQVVNGLSVQLSKVKNSLSLKPIQAKDKHWDYAYTRTADSAQGATYTFVIALI-KGRLALTNYRSAYIDLTRASH 1488
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 1473629812 928 DMMVVTNNLESLKQQLDRTPGNKTSALEVAGKveVEPRHHNPVDPRQLP 976
Cdd:TIGR02760 1489 HVELYTDNKEGTVKSWKQREANKTSAVETEED--YRPKQSTQFNNRAQP 1535
|
|
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
291-955 |
5.33e-44 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 174.21 E-value: 5.33e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 291 AEARARAEVQARPTFR---ETATAALGEIS-----TRIGAALRTPsplavsgpaalflpadtikAQHATASAIRHLSERE 362
Cdd:PRK13709 818 DETRTAEKLARHPSFTvvsEQIKARAGETDletaiSLQKAGLHTP-------------------AQQAIHLALPVLESKN 878
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 363 AAFSPQAILSAALGFQIKGLEGGAVVERIGELIRDGHLIPGKTDRLDGHFDLVTTpAALAMEQQILDRIDAGAGKGRAFM 442
Cdd:PRK13709 879 LAFSMVDLLTEAKSFAAEGTSFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSR-ASYEAEKSILRHILEGKEAVTPLM 957
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 443 P--PEQAMArlqeaarqlgqaragvdnwQLNEGQLAAGVAILSGTDRFLNVQGVAGAGKST----LLGALDKVLSDDGVK 516
Cdd:PRK13709 958 ErvPGELME-------------------GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTqfraVMSAVNTLPESERPR 1018
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 517 LIGLAFQNKMVadlrgggsqgmsaEQMREAGIEAYTIAKFLSTYGRAAAAGSGERFeaakaalANTVIITDESSMVSSRD 596
Cdd:PRK13709 1019 VVGLGPTHRAV-------------GEMRSAGVDAQTLASFLHDTQLQQRSGETPDF-------SNTLFLLDESSMVGNTD 1078
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 597 MLRLTALAEQLDlAKAPFMGDRQQLSAIEQGKMFAVSQAAGQATVR-MDENIRQKNSpLLLAVAGL-SNEGHASLALdll 674
Cdd:PRK13709 1079 MARAYALIAAGG-GRAVSSGDTDQLQAIAPGQPFRLMQTRSAADVAiMKEIVRQTPE-LREAVYSLiNRDVERALSG--- 1153
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 675 aahgrvIEA-GPDHVARAADIWL-------------------------------------------SLSPDKREATAILT 710
Cdd:PRK13709 1154 ------IESvKPSQVPRQEGAWApessvtefshpqeaklaeaqqkamlafpdvpmtlyeaivrdytGRTPEAREQTLIIT 1227
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 711 AGRDDRAEINARVQVGLLKEGALSGPGVTLTTLQSANTTREELRFASTYRVGQVFDARMDVRelglkrgEYEVREIRKDG 790
Cdd:PRK13709 1228 HLNEDRRVLNSMIHDAREKAGELGKEQVTVPVLDTANIRDGELRRLSTWEAHRGALALVDNV-------YHRIAGIDKDD 1300
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 791 KVVL--EAGGRRKVIDPDRLDPDHrfdrIGLYEQRELKIHDGETVFWRDKDGARDIAKSTYATVLECRPEGVRVELADKR 868
Cdd:PRK13709 1301 GLITlrDAEGNTRLISPREAVAEG----VTLYTPDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQT 1376
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 869 QLVLAPGDPMLRRLDLGYALNAHMAQGMTKPEAI--EVISSSQRNLATQRTQNVLNTRATEDMMVVTNNLESLKQQLDRT 946
Cdd:PRK13709 1377 RVIRPGQERAEQHIDLAYAITAHGAQGASETYAIalEGTEGGRKQMAGFESAYVALSRMKQHVQVYTDNRQGWTDAINNA 1456
|
730
....*....|.
gi 1473629812 947 PGNKTS--ALE 955
Cdd:PRK13709 1457 VQKGTAhdVLE 1467
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
469-684 |
1.27e-40 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 148.10 E-value: 1.27e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 469 QLNEGQLAAGVAILSGTDRFLNVQGVAGAGKSTLLGALDKVLSDDGVKLIGLAFQNKMVADLRgggsqgmsaeqmREAGI 548
Cdd:pfam13604 1 TLNAEQAAAVRALLTSGDRVAVLVGPAGTGKTTALKALREAWEAAGYRVIGLAPTGRAAKVLG------------EELGI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 549 EAYTIAKFLSTYGRAAAAGSGerfeaakaalanTVIITDESSMVSSRDMLRLTALAEQLDlAKAPFMGDRQQLSAIEQGK 628
Cdd:pfam13604 69 PADTIAKLLHRLGGRAGLDPG------------TLLIVDEAGMVGTRQMARLLKLAEDAG-ARVILVGDPRQLPSVEAGG 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1473629812 629 MFAVSQAAGQATVRMDENIRQKNSPLLLAVAGLSnEGHASLALDLLAAHGRVIEAG 684
Cdd:pfam13604 136 AFRDLLAAGIGTAELTEIVRQRDPWQRAASLALR-DGDPAEALDALADRGRIHEGD 190
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
342-955 |
7.97e-37 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 146.27 E-value: 7.97e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 342 ADTIKAQHAT--ASAIRHLSEREAAFSPQAILSAALGFQIkglegGAVVERIGELIRDGHLIpgktdrLDGHFdlvTTPA 419
Cdd:COG0507 20 ADFIARDDPIraAALLSRAAGEGHTFPLEDLAAARLLGVA-----EDIEAALAALVESGPLV------LDGRR---YLTR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 420 ALAMEQQILDRIDAGAgkgRAFMPPEQAMARLQEAARQLGQaragvdnwQLNEGQLAAgVAILSGTDRFLNVQGVAGAGK 499
Cdd:COG0507 86 LLEAEQRLARRLRRLA---RPALDEADVEAALAALEPRAGI--------TLSDEQREA-VALALTTRRVSVLTGGAGTGK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 500 STLLGALDKVLSDDGVKLIGLAFQNKmvadlrgggsqgmSAEQMREA-GIEAYTIAKFLstygRAAAAGSGERFEAAKAA 578
Cdd:COG0507 154 TTTLRALLAALEALGLRVALAAPTGK-------------AAKRLSEStGIEARTIHRLL----GLRPDSGRFRHNRDNPL 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 579 LANTVIITDESSMVSSRDMLRLTALAEQLDlAKAPFMGDRQQLSAIEQGKMFAVSQAAGQ-ATVRMDENIRQKNSPLLLA 657
Cdd:COG0507 217 TPADLLVVDEASMVDTRLMAALLEALPRAG-ARLILVGDPDQLPSVGAGAVLRDLIESGTvPVVELTEVYRQADDSRIIE 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 658 VAGLSNEGHASLALDLLAAHGRVIEAG--PDHVARAADIWlSLSPDKREATAILTAGRDDRAEINARVQVGLLKEGALSg 735
Cdd:COG0507 296 LAHAIREGDAPEALNARYADVVFVEAEdaEEAAEAIVELY-ADRPAGGEDIQVLAPTNAGVDALNQAIREALNPAGELE- 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 736 pgvtlttlqsanttreelrfastyrvgqvfdarmdvrelglkrgeyevREIRKDGKVVLEAGgrRKVI----DPDRldpd 811
Cdd:COG0507 374 ------------------------------------------------RELAEDGELELYVG--DRVMftrnDYDL---- 399
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 812 hrfdriGLYeqrelkihDGETvfwrdkdgardiakstyATVLECRPEG--VRVELADKRQLVLAPGDpmLRRLDLGYALN 889
Cdd:COG0507 400 ------GVF--------NGDI-----------------GTVLSIDEDEgrLTVRFDGREIVTYDPSE--LDQLELAYAIT 446
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1473629812 890 AHMAQGMTKPEAIEVISSSQRNLATQRTQNVLNTRATEDMMVVTNNlESLKQQLdRTPGNKTSALE 955
Cdd:COG0507 447 VHKSQGSTFDRVILVLPSEHSPLLSRELLYTALTRARELLTLVGDR-DALARAV-RRDTARATGLA 510
|
|
| PRK14712 |
PRK14712 |
conjugal transfer nickase/helicase TraI; Provisional |
136-412 |
2.53e-24 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237796 [Multi-domain] Cd Length: 1623 Bit Score: 110.72 E-value: 2.53e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 136 TGNLVYALFAHDTSRALDPQGHIHAVVANLTRDpKGTWKAQWNGEIWK---------NNTTIGQFYHAAFRAQLQNLGYE 206
Cdd:PRK14712 3 TGNLVMALFNHDTSRDQEPQLHTHAVVANVTQH-NGEWKTLSSDKVGKtgfienvyaNQIAFGRLYREKLKEQVEALGYE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 207 TEAAGKHGSFEIKGVPssvIKEFSQRREDILTKVEElgIASPQGQDRVTVNTRDPKLAVEDRAALVQaWQDRSAELGFDG 286
Cdd:PRK14712 82 TEVVGKHGMWEMPGVP---VEAFSGRSQTIREAVGE--DASLKSRDVAALDTRKSKQHVDPEVRMAE-WMQTLKETGFDI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 287 QALIAEARARAEVQArptfretataalgeistrigaalRTPSPLAVSGPaalflpadtiKAQHATASAIRHLSEREAAFS 366
Cdd:PRK14712 156 RAYRDAAEQRAYTRT-----------------------QTPGPASQDGP----------DVQQAVTQAIAGLSERKVQFM 202
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1473629812 367 PQAILSAALGfqIKGLEGGaVVER----IGELIRDGHLIPgkTDRLDGHF 412
Cdd:PRK14712 203 YTDLLARTVG--ILPPENG-VIERaragIDEAISREQLIP--LDREKGLF 247
|
|
| PRK14712 |
PRK14712 |
conjugal transfer nickase/helicase TraI; Provisional |
261-935 |
2.12e-23 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237796 [Multi-domain] Cd Length: 1623 Bit Score: 107.64 E-value: 2.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 261 PKLAVEDRAALVQAwqdrSAELGFDGQALIAEARARAEVQARPTFRETATA-------ALGEISTRIGA-ALRTPSPLAV 332
Cdd:PRK14712 645 PGHSVSDSATVFAS----VTQMAMDNATLNGLARSGRDVRLYSSLDETRTAeklarhpSFTVVSEQIKArAGETLLETAI 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 333 S-GPAALFLPAdtikaQHATASAIRHLSEREAAFSPQAILSAALGFQIKGLEGGAVVERIGELIRDGHLIpgKTDRLDGH 411
Cdd:PRK14712 721 SlQKAGLHTPA-----QQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFADLGGEINAQIKRGDLL--YVDVAKGY 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 412 -FDLVTTPAALAMEQQILDRIDAGagkgrafmppeqamarlQEAARQLGQARAGVDNWQLNEGQLAAGVAILSGTDRFLN 490
Cdd:PRK14712 794 gTGLLVSRASYEAEKSILRHILEG-----------------KEAVTPLMERVPGELMEKLTSGQRAATRMILETSDRFTV 856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 491 VQGVAGAGKST----LLGALDKVLSDDGVKLIGLAFQNKMVAdlrgggsqgmsaeQMREAGIEAYTIAKFLSTYGRAAAA 566
Cdd:PRK14712 857 VQGYAGVGKTTqfraVMSAVNMLPESERPRVVGLGPTHRAVG-------------EMRSAGVDAQTLASFLHDTQLQQRS 923
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 567 GSGERFeaakaalANTVIITDESSMVSSRDMLRLTALAeQLDLAKAPFMGDRQQLSAIEQGKMFAVSQAAGQATVRMDEN 646
Cdd:PRK14712 924 GETPDF-------SNTLFLLDESSMVGNTDMARAYALI-AAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVVIMKE 995
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 647 IRQKNSPLLLAVAGLSN---------------------EG------------HASLALDLLAAHGRVI--EAGPD----- 686
Cdd:PRK14712 996 IVRQTPELREAVYSLINrdveralsglervkpsqvprlEGawapehsvtefsHSQEAKLAEAQQKAMLkgEAFPDvpmtl 1075
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 687 HVARAADiWLSLSPDKREATAILTAGRDDRAEINARVQVGLLKEGALSGPGVTLTTLQSANTTREELRFASTYRVGQVFD 766
Cdd:PRK14712 1076 YEAIVRD-YTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGQVQVMVPVLNTANIRDGELRRLSTWENNPDAL 1154
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 767 ARMDvrelglkRGEYEVREIRKDGKVVL--EAGGRRKVIDPDrldpDHRFDRIGLYEQRELKIHDGETVFWRDKDGARDI 844
Cdd:PRK14712 1155 ALVD-------NVYHRIAGISKDDGLITlqDAEGNTRLISPR----EAVAEGVTLYTPDTIRVGTGDRIRFTKSDRERGY 1223
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 845 AKSTYATVLECrpEGVRVELADKRQL-VLAPGDPMLRR-LDLGYALNAHMAQGMTKPEAI--EVISSSQRNLATQRTQNV 920
Cdd:PRK14712 1224 VANSVWTVTAV--SGDSVTLSDGQQTrVIRPGQERAEQhIDLAYAITAHGAQGASETFAIalEGTEGNRKLMAGFESAYV 1301
|
730
....*....|....*
gi 1473629812 921 LNTRATEDMMVVTNN 935
Cdd:PRK14712 1302 ALSRMKQHVQVYTDN 1316
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
473-646 |
6.55e-19 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 84.53 E-value: 6.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 473 GQLAAGVAILSgtDRFLNVQGVAGAGKSTLLGALDKVLSDDGVKLIGLAfqnkmvadlrgggSQGMSAEQMREA-GIEAY 551
Cdd:cd17933 1 EQKAAVRLVLR--NRVSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAA-------------PTGKAAKRLSEStGIEAS 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 552 TIAKFLstygRAAAAGSGERFEAAKAaLANTVIITDESSMVSSRDMLRLTALAEqlDLAKAPFMGDRQQLSAIEQGKMFA 631
Cdd:cd17933 66 TIHRLL----GINPGGGGFYYNEENP-LDADLLIVDEASMVDTRLMAALLSAIP--AGARLILVGDPDQLPSVGAGNVLR 138
|
170
....*....|....*.
gi 1473629812 632 -VSQAAGQATVRMDEN 646
Cdd:cd17933 139 dLIASKGVPTVELTEV 154
|
|
| TraA_Ti |
TIGR02768 |
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a ... |
419-807 |
1.82e-16 |
|
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Pssm-ID: 274289 [Multi-domain] Cd Length: 744 Bit Score: 84.47 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 419 AALAMEQQILDRIDAGAGKG------RAFMPPEQAMARlqeAARQLGQARA-GVD----------NWQLNEGQLAAgVAI 481
Cdd:TIGR02768 288 ARVLASPQLVALGDPGTGKEparfstREMIRLEAQMAR---SAEALSQSQGhGVSppivdaaidqHYRLSEEQYEA-VRH 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 482 LSGTDRFLNVQGVAGAGKSTLLGALDKVLSDDGVKLIGLAfqnkmvadLRGGGSQGMSAeqmrEAGIEAYTIAkflstyg 561
Cdd:TIGR02768 364 VTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA--------LSGKAAEGLQA----ESGIESRTLA------- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 562 raaaagSGE-RFEAAKAALAN-TVIITDESSMVSSRDMLRLTALAEQLDlAKAPFMGDRQQLSAIEQGKMF-AVSQAAGQ 638
Cdd:TIGR02768 425 ------SLEyAWANGRDLLSDkDVLVIDEAGMVGSRQMARVLKEAEEAG-AKVVLVGDPEQLQPIEAGAAFrAIAERIGY 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 639 A---TVRMDENIRQKNSPLLLAvaglsnEGHASLALDLLAAHGRVIEAGPDHVARA---ADiWLSLSPDKREATA--ILT 710
Cdd:TIGR02768 498 AeleTIRRQREAWARQASLELA------RGDVEKALAAYRDHGHITIHDTREEAIEqvvAD-WKQDLREANPAGSqiMLA 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 711 AGRDDRAEINARVQVGLLKEGALsGPGVTLTTLQSanttreELRFASTYRVgqVFdaRMDVRELGLKRGEYEVREIRKDG 790
Cdd:TIGR02768 571 HTRKDVRALNEAAREALIERGEL-GESILFQTARG------ERKFAAGDRI--VF--LENNRDLGVKNGMLGTVEEIEDG 639
|
410
....*....|....*..
gi 1473629812 791 KVVLEAGGRRKVIDPDR 807
Cdd:TIGR02768 640 RLVVQLDSGELVIIPQA 656
|
|
| PRK13889 |
PRK13889 |
conjugal transfer relaxase TraA; Provisional |
451-779 |
3.68e-08 |
|
conjugal transfer relaxase TraA; Provisional
Pssm-ID: 237546 [Multi-domain] Cd Length: 988 Bit Score: 57.78 E-value: 3.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 451 LQEAARQLGQARAGVDNWQLNEGQLAAGVAILSGTDRFLnVQGVAGAGKSTLLGALDKVLSDDGVkliglafqnkmvaDL 530
Cdd:PRK13889 328 VSDADREAALARAEARGLVLSGEQADALAHVTDGRDLGV-VVGYAGTGKSAMLGVAREAWEAAGY-------------EV 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 531 RGGGSQGMSAEQMRE-AGIEAYTIAKFLSTYGRAaaagsgerFEAAKAalaNTVIITDESSMVSSRDMLRLTALAEQLDl 609
Cdd:PRK13889 394 RGAALSGIAAENLEGgSGIASRTIASLEHGWGQG--------RDLLTS---RDVLVIDEAGMVGTRQLERVLSHAADAG- 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 610 AKAPFMGDRQQLSAIEQGKMF-AVSQAAGQA---TVRMDENIRQKNSPLLLAVaglsneGHASLALDLLAAHGRVIEAGP 685
Cdd:PRK13889 462 AKVVLVGDPQQLQAIEAGAAFrSIHERHGGAeigEVRRQREDWQRDATRDLAT------GRTGEALDAYEAHGMVHAAAT 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 686 DHVARAA--DIW---LSLSPDKREatAILTAGRDDRAEINARVQVGLLKEGALsGPGVTLTtlqsanTTREELRFASTYR 760
Cdd:PRK13889 536 REQARADliDRWdrdRQAAPDRSR--IILTHTNDEVRALNEAARERMRAAGDL-GDDVRVT------VERGERSFASGDR 606
|
330
....*....|....*....
gi 1473629812 761 VgqVFdARMDvRELGLKRG 779
Cdd:PRK13889 607 V--MF-LQNE-RGLGVKNG 621
|
|
| PRK13826 |
PRK13826 |
Dtr system oriT relaxase; Provisional |
414-731 |
7.07e-07 |
|
Dtr system oriT relaxase; Provisional
Pssm-ID: 237524 [Multi-domain] Cd Length: 1102 Bit Score: 53.63 E-value: 7.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 414 LVTTPAALAMEQqilDRIDAGAGKGRAFMPPEQAMARLQ-EAARQL----GQARAGVDNWQLNE---------GQLAAGV 479
Cdd:PRK13826 314 ILQSPEVLRLER---ERIDFATGIRVPARYTTRAMIRLEaEMARRAiwlsGRSSHGVREAVLAAtfarharlsDEQKTAI 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 480 AILSGTDRFLNVQGVAGAGKSTLLGALDKVLSDDGVKLIGLAfqnkmvadLRGGGSQGMSaeqmREAGIEAYTIAkflst 559
Cdd:PRK13826 391 EHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGA--------LAGKAAEGLE----KEAGIQSRTLS----- 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 560 ygraaaagSGE-RFEAAKAALAN-TVIITDESSMVSSRDMLRLTALAEQLDlAKAPFMGDRQQLSAIEQGKMF-AVSQAA 636
Cdd:PRK13826 454 --------SWElRWNQGRDQLDNkTVFVLDEAGMVASRQMALFVEAVTRAG-AKLVLVGDPEQLQPIEAGAAFrAIADRI 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 637 GQATVrmdENI-RQKNSPLLLAVAGLSnEGHASLALDLLAAHGRVI--EAGPDHVARAADIWlSLSPDKREATAILTAGR 713
Cdd:PRK13826 525 GYAEL---ETIyRQREQWMRDASLDLA-RGNVGKALDAYRANGRVIgsRLKAEAVESLIADW-NRDYDPTKTTLILAHLR 599
|
330 340
....*....|....*....|...
gi 1473629812 714 DDRAEIN--AR---VQVGLLKEG 731
Cdd:PRK13826 600 RDVRMLNemARaklVERGIVGEG 622
|
|
| AAA_19 |
pfam13245 |
AAA domain; |
475-621 |
7.55e-04 |
|
AAA domain;
Pssm-ID: 433059 [Multi-domain] Cd Length: 136 Bit Score: 40.66 E-value: 7.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473629812 475 LAAGVAILSGTdrflnvqgvAGAGKSTLLGALDKVLsddgVKLIGLAFQNKMVAdlrgggSQGMSAEQMREA-GIEAYTI 553
Cdd:pfam13245 9 LPSKVVLLTGG---------PGTGKTTTIRHIVALL----VALGGVSFPILLAA------PTGRAAKRLSERtGLPASTI 69
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1473629812 554 AKFLSTYGRAAAAGSGERFEAakaaLANTVIITDESSMVSSRDMLRL-TALAEQLDLAkapFMGDRQQL 621
Cdd:pfam13245 70 HRLLGFDDLEAGGFLRDEEEP----LDGDLLIVDEFSMVDLPLAYRLlKALPDGAQLL---LVGDPDQL 131
|
|
| |
