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Conserved domains on  [gi|1468673905|ref|WP_117547800|]
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MULTISPECIES: zinc ribbon domain-containing protein [Longicatena]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10577258)

zinc ribbon domain-containing protein is likely to be DNA-binding

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Zn_ribbon_2 pfam12674
Putative zinc ribbon domain; This domain appears to be a zinc binding DNA-binding domain.
 5-84 8.50e-31

Putative zinc ribbon domain; This domain appears to be a zinc binding DNA-binding domain.


:

Pssm-ID: 463667  Cd Length: 82  Bit Score: 103.47  E-value: 8.50e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468673905  5 ICQSCGMPLSED-VLGSNADGSKNEEYCMYCMKEGNFTA-DCTMEEMIDFCVKPMMEEMPEKSETEIRNMIASYMPLLKR 82
Cdd:pfam12674  1 FCQSCGMPLKDDeDFGTEADGSKNEDYCKYCYKDGEFTYpDLTMEEMIEFCVKFMDEENGEMTEEEARAMMKKFLPKLKR 80


                 ..
gi 1468673905 83 WK 84
Cdd:pfam12674 81 WK 82
 
Name Accession Description Interval E-value
Zn_ribbon_2 pfam12674
Putative zinc ribbon domain; This domain appears to be a zinc binding DNA-binding domain.
 5-84 8.50e-31

Putative zinc ribbon domain; This domain appears to be a zinc binding DNA-binding domain.


Pssm-ID: 463667  Cd Length: 82  Bit Score: 103.47  E-value: 8.50e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468673905  5 ICQSCGMPLSED-VLGSNADGSKNEEYCMYCMKEGNFTA-DCTMEEMIDFCVKPMMEEMPEKSETEIRNMIASYMPLLKR 82
Cdd:pfam12674  1 FCQSCGMPLKDDeDFGTEADGSKNEDYCKYCYKDGEFTYpDLTMEEMIEFCVKFMDEENGEMTEEEARAMMKKFLPKLKR 80


                 ..
gi 1468673905 83 WK 84
Cdd:pfam12674 81 WK 82
 
Name Accession Description Interval E-value
Zn_ribbon_2 pfam12674
Putative zinc ribbon domain; This domain appears to be a zinc binding DNA-binding domain.
 5-84 8.50e-31

Putative zinc ribbon domain; This domain appears to be a zinc binding DNA-binding domain.


Pssm-ID: 463667  Cd Length: 82  Bit Score: 103.47  E-value: 8.50e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468673905  5 ICQSCGMPLSED-VLGSNADGSKNEEYCMYCMKEGNFTA-DCTMEEMIDFCVKPMMEEMPEKSETEIRNMIASYMPLLKR 82
Cdd:pfam12674  1 FCQSCGMPLKDDeDFGTEADGSKNEDYCKYCYKDGEFTYpDLTMEEMIEFCVKFMDEENGEMTEEEARAMMKKFLPKLKR 80


                 ..
gi 1468673905 83 WK 84
Cdd:pfam12674 81 WK 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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