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Conserved domains on  [gi|1450040851|ref|WP_116114910|]
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sugar ABC transporter permease [Austwickia chelonae]

Protein Classification

sugar ABC transporter permease( domain architecture ID 10790449)

sugar ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of sugar substrates including oligosaccharides and maltodextrin

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020|GO:0008643
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 23-303 1.45e-116

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


:

Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 336.74  E-value: 1.45e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  23 TDRRDRPVRSVPASIALHTTLVLATSIAVFPILWIALASFRPANKVSSTSILVA-PTLENYHKLLFSTNFLSWFGNSLVV 101
Cdd:COG3833     2 SRRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSLIPEnFTLENYKKLFTETPFLRWFLNSLIV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 102 ALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIAVPFCTWM 181
Cdd:COG3833    82 AVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 182 LKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTLAYGMQVFVPQA 261
Cdd:COG3833   162 MKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDQ 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1450040851 262 PAlPHWDLLASAAVLITIPAAIVFFFAQRHLVAGLTAGSTKG 303
Cdd:COG3833   242 RN-TNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
 
Name Accession Description Interval E-value
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 23-303 1.45e-116

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 336.74  E-value: 1.45e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  23 TDRRDRPVRSVPASIALHTTLVLATSIAVFPILWIALASFRPANKVSSTSILVA-PTLENYHKLLFSTNFLSWFGNSLVV 101
Cdd:COG3833     2 SRRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSLIPEnFTLENYKKLFTETPFLRWFLNSLIV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 102 ALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIAVPFCTWM 181
Cdd:COG3833    82 AVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 182 LKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTLAYGMQVFVPQA 261
Cdd:COG3833   162 MKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDQ 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1450040851 262 PAlPHWDLLASAAVLITIPAAIVFFFAQRHLVAGLTAGSTKG 303
Cdd:COG3833   242 RN-TNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
38-303 6.22e-50

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 167.19  E-value: 6.22e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  38 ALHTTLVLATSIAVFPILWIALASFRPANKVSSTSILVAPTLENYHKLL-FS------------TNFLSWFGNSLVVALF 104
Cdd:PRK10998   15 ATHLLLLGFIALIMFPLLMVIAISLREGNFATGSLIPEQISWEHWKLALgFSvehadgrvtpppFPVLLWLWNSVKVAGI 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 105 TMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGL------INTHLSLILAYCTiAVPFC 178
Cdd:PRK10998   95 TAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIFAYLG-GIALH 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 179 TWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTLAYGMQVFV 258
Cdd:PRK10998  174 VWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYL 253

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1450040851 259 PQAPALphWDLLASAAVLITIPAAIVFFFAQRHLVAGLTAGSTKG 303
Cdd:PRK10998  254 NPQNYL--WGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 95-280 1.08e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 76.55  E-value: 1.08e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  95 FGNSLVVALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIA 174
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 175 V----PFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTL 250
Cdd:cd06261    81 LlliaPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1450040851 251 AYGMQVFVPQAPALphWDLLASAAVLITIP 280
Cdd:cd06261   161 TGLLLIFAILFPGD--LGVAAAVALILLLL 188
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 122-296 1.27e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 62.32  E-value: 1.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 122 RFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDG 201
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 202 LSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTD---DRFTLAYGMQVFvpqapalPHWDLLASAAVLIT 278
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPglgLLLIEAILGYDY-------PEIQGPVLAAALIL 163

                         170
                  ....*....|....*...
gi 1450040851 279 IPAAIVFFFAQRHLVAGL 296
Cdd:pfam00528 164 LLLNLLVDILQRLLDPRV 181
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 79-228 3.14e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 45.06  E-value: 3.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  79 LENYHKLLFSTNFLSWFGNSLVVALFTMLFGITMSATAGYAISRFNFPGKrPLMWTFLITQMFPVSIL--IVPIY----- 151
Cdd:TIGR03262  40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGK-GAFRLVALLPLLAPSLLpaISLIYlfgnq 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 152 ---TIMSTLGLINTHLSLILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTF 228
Cdd:TIGR03262 119 gllKGLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVF 198
 
Name Accession Description Interval E-value
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 23-303 1.45e-116

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 336.74  E-value: 1.45e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  23 TDRRDRPVRSVPASIALHTTLVLATSIAVFPILWIALASFRPANKVSSTSILVA-PTLENYHKLLFSTNFLSWFGNSLVV 101
Cdd:COG3833     2 SRRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSLIPEnFTLENYKKLFTETPFLRWFLNSLIV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 102 ALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIAVPFCTWM 181
Cdd:COG3833    82 AVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 182 LKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTLAYGMQVFVPQA 261
Cdd:COG3833   162 MKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDQ 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1450040851 262 PAlPHWDLLASAAVLITIPAAIVFFFAQRHLVAGLTAGSTKG 303
Cdd:COG3833   242 RN-TNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 25-303 1.85e-93

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 278.13  E-value: 1.85e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  25 RRDRPVRSVPASIALHTTLVLATSIAVFPILWIALASFRPANKVSSTSILVAP---TLENYHKLLFSTNFLSWFGNSLVV 101
Cdd:COG0395     3 ATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPsefTLENYRAAFTDGPFGRYLLNSLIV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 102 ALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIAVPFCTWM 181
Cdd:COG0395    83 AVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 182 LKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTLAYGMQVFVPQa 261
Cdd:COG0395   163 LRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQ- 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1450040851 262 pALPHWDLLASAAVLITIPAAIVFFFAQRHLVAGLTAGSTKG 303
Cdd:COG0395   242 -YGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
38-303 6.22e-50

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 167.19  E-value: 6.22e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  38 ALHTTLVLATSIAVFPILWIALASFRPANKVSSTSILVAPTLENYHKLL-FS------------TNFLSWFGNSLVVALF 104
Cdd:PRK10998   15 ATHLLLLGFIALIMFPLLMVIAISLREGNFATGSLIPEQISWEHWKLALgFSvehadgrvtpppFPVLLWLWNSVKVAGI 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 105 TMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGL------INTHLSLILAYCTiAVPFC 178
Cdd:PRK10998   95 TAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIFAYLG-GIALH 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 179 TWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTLAYGMQVFV 258
Cdd:PRK10998  174 VWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYL 253

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1450040851 259 PQAPALphWDLLASAAVLITIPAAIVFFFAQRHLVAGLTAGSTKG 303
Cdd:PRK10998  254 NPQNYL--WGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 31-239 1.24e-30

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 115.59  E-value: 1.24e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  31 RSVPASIALHTTLVLATSIAVFPILWIALASFrpANKVSSTSILVAPTLENYHKLLFSTNFLSWFGNSLVVALFTMLFGI 110
Cdd:COG1177     1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSF--NDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLAT 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 111 TMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIAVPFCTWMLKGYFDSIP 190
Cdd:COG1177    79 VLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1450040851 191 TELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYAS 239
Cdd:COG1177   159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITL 207
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
40-296 2.05e-25

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 102.51  E-value: 2.05e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  40 HTTLVLATSIAVFPILWIALASFRPANKVSSTSILVAPT---LENYHKLLF------STNFLSWFGNSLVVALFTMLFGI 110
Cdd:PRK10973   13 HTMLILGIAVILFPLYVAFVAATLDKQAVFAVPMTLIPGthlLENIANIWVngvgnnSAPFGRMLLNSFVMAFSITVGKI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 111 TMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAycTIAVPFCTWMLKGYFDSIP 190
Cdd:PRK10973   93 TVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLP--LMASATATFLFRQFFMTLP 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 191 TELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTLAYGMQVFVPQAPALPHWDLL 270
Cdd:PRK10973  171 DELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIATGEGTTEWNQV 250

                         250       260
                  ....*....|....*....|....*.
gi 1450040851 271 ASAAVLITIPAAIVFFFAQRHLVAGL 296
Cdd:PRK10973  251 MAAMLLTLIPPVVIVLAMQRAFVRGL 276
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
25-290 1.70e-23

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 100.24  E-value: 1.70e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  25 RRDRPVRSVPASIALHTTLVLATSIAVFPILWIALASFRPAnkvsstsILVAPTLENYHKLLFSTNFLSWFGNSLVVALF 104
Cdd:COG1178   277 RPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKA-------LDDNLTLDNYRFVLLDPSLLRALLNSLLLALL 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 105 TMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSIL---IVPIYTIMSTLGLINTHLSLILAYCTIAVPFCTWM 181
Cdd:COG1178   350 AALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLglgLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRS 429

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 182 LKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAyASAFINTDDRFTLAygmqVFVPQA 261
Cdd:COG1178   430 LEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELS-ATLLLRPPGFETLA----VLIYQL 504

                         250       260
                  ....*....|....*....|....*....
gi 1450040851 262 PALPHWDLLASAAVLITIPAAIVFFFAQR 290
Cdd:COG1178   505 ASSGRYGEAAALALLLVLVSLLPVLLLER 533
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 51-234 1.54e-17

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 80.96  E-value: 1.54e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  51 VFPILWIALASFRPANKVSStsILVAPTLENYHKLLFSTNFLSWFGNSLVVALFTMLFGITMSATAGYAISRFNFPGKRp 130
Cdd:COG1176    27 VLPLLLLLVYSFTTRDPYGG--VVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRN- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 131 lMWTFLITQMFPVSILIV------------PIYTIMSTLGLI-------NTHLSLILAYCTIAVPFCTWMLKGYFDSIPT 191
Cdd:COG1176   104 -LLLLLVILPFWTSFLVRtyawivllgrngLLNSLLLALGLIdeplrllYTEFAVVIGLVYVYLPFMVLPLYAALEKIDP 182

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1450040851 192 ELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGE 234
Cdd:COG1176   183 SLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGA 225
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
31-229 6.30e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 80.59  E-value: 6.30e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  31 RSVPASIALHTTLVLATSIAVFPILWIALASFRPAnkvsstsilvaptLENYHKLLFSTNFLSWFGNSLVVALFTMLFGI 110
Cdd:COG1178     5 PRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG-------------LANFWALLSDPYLWRALGNTLLLALLVTLLSL 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 111 TMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLS---------------LILAYCTIAV 175
Cdd:COG1178    72 LLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRalfgleppdiyglggIILVLVLFNY 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1450040851 176 PFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFL 229
Cdd:COG1178   152 PYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 95-280 1.08e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 76.55  E-value: 1.08e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  95 FGNSLVVALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIA 174
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 175 V----PFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTDDRFTL 250
Cdd:cd06261    81 LlliaPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1450040851 251 AYGMQVFVPQAPALphWDLLASAAVLITIP 280
Cdd:cd06261   161 TGLLLIFAILFPGD--LGVAAAVALILLLL 188
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 95-234 6.85e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 64.39  E-value: 6.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  95 FGNSLVVALFTMLFGITMsataGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSL-------- 166
Cdd:COG0555    60 LGTALIAALINLVFGLPL----AWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPlgikvaft 135

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1450040851 167 ----ILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGE 234
Cdd:COG0555   136 plgiVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGE 207
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 122-296 1.27e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 62.32  E-value: 1.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 122 RFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDG 201
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 202 LSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASAFINTD---DRFTLAYGMQVFvpqapalPHWDLLASAAVLIT 278
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPglgLLLIEAILGYDY-------PEIQGPVLAAALIL 163

                         170
                  ....*....|....*...
gi 1450040851 279 IPAAIVFFFAQRHLVAGL 296
Cdd:pfam00528 164 LLLNLLVDILQRLLDPRV 181
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
42-231 2.30e-11

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 63.23  E-value: 2.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  42 TLVLATSIAVFPILWIALASFRPANKVSSTSILVAptLENYHKLLFSTNFLSWFGNSLVVALFTMLFGITMSATAGYAIS 121
Cdd:COG1175    27 ALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVG--LDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLN 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 122 RfNFPGKRPLMWTFLITQMFPVSILIVPIYTIMS-TLGLINTHL-------------------SLILAYCTIAVPFCTWM 181
Cdd:COG1175   105 R-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALLgalglepinwlgdpslalpAVIIVTVWKGTGFNMLI 183

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1450040851 182 LKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTA 231
Cdd:COG1175   184 FLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGA 233
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 87-234 8.77e-10

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 57.75  E-value: 8.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  87 FSTNFLSWFGNSLVVALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLS- 165
Cdd:COG4149     1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEe 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 166 ------------LILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWG 233
Cdd:COG4149    81 lfgislvftwtgAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160


                  .
gi 1450040851 234 E 234
Cdd:COG4149   161 E 161
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 78-221 2.96e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 56.53  E-value: 2.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  78 TLENYHKLLFSTNFLSWFGNSLVVALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTL 157
Cdd:PRK09500   42 TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLL 121

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1450040851 158 GLINTHLSLILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLA 221
Cdd:PRK09500  122 GIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVA 185
cysT CHL00187
sulfate transport protein; Provisional
 92-234 1.41e-07

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 51.55  E-value: 1.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  92 LSWFGNSLVVALFTMLFGITMSATAGYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLGLINTHLSLI---- 167
Cdd:CHL00187   54 LSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLgiqi 133

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1450040851 168 --------LAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGE 234
Cdd:CHL00187  134 vftklgvlLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGE 208
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 79-228 3.14e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 45.06  E-value: 3.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  79 LENYHKLLFSTNFLSWFGNSLVVALFTMLFGITMSATAGYAISRFNFPGKrPLMWTFLITQMFPVSIL--IVPIY----- 151
Cdd:TIGR03262  40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGK-GAFRLVALLPLLAPSLLpaISLIYlfgnq 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 152 ---TIMSTLGLINTHLSLILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTF 228
Cdd:TIGR03262 119 gllKGLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVF 198
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
100-234 4.16e-05

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 44.36  E-value: 4.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 100 VVALFTMLFGITMSatagYAISRFNFPGKRPLMWTFLITQMFPVSILIVPIYTIMSTLG------------LINTHLSLI 167
Cdd:PRK10971   69 VASIFNAVFGLLMA----WILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGwygewlakfdikVTYTWLGIA 144

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1450040851 168 LAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGE 234
Cdd:PRK10971  145 VAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGE 211
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 28-247 9.72e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 43.52  E-value: 9.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  28 RPVRSVPASIALHTTLVLATSIAVFPIL-WIALASFRPANKvsstsilvAPTLENYHKLLFSTNFLSWFGNSLVVALFTM 106
Cdd:TIGR03262 274 KPNRVRDAACLVYCAIISAALLAVVGMAvYASLVKFWPYNL--------SLTLKHYNFDLMDGGGWEAYKNSLRLAATTA 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 107 LFGITMSATAGYAISRFNFPGK-RPLMWTFLITQMfPVSILIVPIYTIM-------STLGLINTHLSLILayCTIA---- 174
Cdd:TIGR03262 346 LIGTILVFGGAYLIEKTRGFGLlRGVLRFLAILPM-AVPGLVLGLGYIFffnaptnPLNGLYGTMALLVL--CTVVhfyt 422

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1450040851 175 VPFCTWM--LKgyfdSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAyASAFINTDDR 247
Cdd:TIGR03262 423 VSHLTAVtaLK----QIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVS-AVVFLYSPDT 492
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 32-232 6.25e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 40.52  E-value: 6.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  32 SVPASIALHTTLVLATSIAVFPILWIALASFRPANKVsstsILVAP--TLENYHKLLFSTNFLSWFGNSLVVALFTMLFG 109
Cdd:COG0600     2 TTSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPF----LLPSPsaVLAALVELLASGELWEHLLASLLRVLLGFALA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 110 ITMSATAGYAISRFNFpGKRPLMWTFLITQMFPVsILIVPIYTIMstLGLinTHLSLILAYCTIAVPFCTWMLKGYFDSI 189
Cdd:COG0600    78 ALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPP-LALAPLLILW--FGI--GEASKIFVIFLGAFFPILLNTAAGVRSV 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1450040851 190 PTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAW 232
Cdd:COG0600   152 DPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 18-229 6.52e-04

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 40.76  E-value: 6.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  18 AVPAATDR-RDRPVRSVPASIALHTTLVLATsIAVFPILWIALASFRPANkvsstsilvAPTLENYHKLLFSTNFLSWFG 96
Cdd:PRK15050    7 ASAAAHAAaARRRRRLRPLLWLLLPLLVLAP-LVVYPLVRVVLQSLTGEH---------GLGLATYRAVLGSPDFRGALL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  97 NSLVVALFTMLFGITMSATAGYAISRFNFPGKR-----------------PLMWTFLITQMFPVSILIVPIYTIMST-LG 158
Cdd:PRK15050   77 TTLQIAFASTAGCLVLGVLLALVLAFVPFPGASlvgrfidtfvafpsfliTLAFTFLYGSAGSVNIALQRLFGLEAPpLD 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1450040851 159 LINTHLSLILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFL 229
Cdd:PRK15050  157 FLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 188-220 9.76e-04

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 40.60  E-value: 9.76e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1450040851 188 SIPTELDEAAQVDGLSPFGTFWRVILPLARPGL 220
Cdd:COG4986   158 TVPRDLDEAARIFRLSGWQRFWRLELPFAMPGL 190
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 78-233 1.38e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 39.67  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  78 TLENYHKL---LFSTNFLSWFGNSLVVALFTMLFGITMSatagYAISRFNfPGKRPLMwTFLITQMFPVSILIvPIYTIM 154
Cdd:PRK09497   49 TLDNYTRLldpLYAEVLLHSLNMALIATLACLVLGYPFA----WFLAKLP-HKVRPLL-LFLLIVPFWTNSLI-RIYGLK 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851 155 STLG--------------------LINTHLSLILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILP 214
Cdd:PRK09497  122 IFLStkgylnefllwlgvidtpirIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIP 201

                         170
                  ....*....|....*....
gi 1450040851 215 LARPGLAVTAFYTFLTAWG 233
Cdd:PRK09497  202 LTMPGIIAGCLLVLLPAMG 220
modB PRK09421
molybdate ABC transporter permease subunit;
98-234 3.77e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 37.98  E-value: 3.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1450040851  98 SLVVALFTMLFGITMSATAGYAISRFNFPGKRplmwtfLITQMFPVSILIVPIYT------IMSTLGLINTHLS------ 165
Cdd:PRK09421   14 SLKVSSVAVLFSLPFGILVAWLLARCRFPGKS------LLDSLLHLPLVLPPVVTgyllliSMGRRGFIGQWLYewfgis 87

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1450040851 166 -------LILAYCTIAVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGE 234
Cdd:PRK09421   88 fafswrgAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGE 163
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
174-240 8.51e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 37.02  E-value: 8.51e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1450040851 174 AVPFCTWMLKGYFDSIPTELDEAAQVDGLSPFGTFWRVILPLARPGLAVTAFYTFLTAWGEVAYASA 240
Cdd:PRK10782  100 AAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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