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Conserved domains on  [gi|1442959020|ref|WP_115260449|]
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antibiotic biosynthesis monooxygenase [Micrococcus luteus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NIPSNAP super family cl46801
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 47-102 4.52e-04

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


The actual alignment was detected with superfamily member COG1359:

Pssm-ID: 481141  Cd Length: 91  Bit Score: 36.08  E-value: 4.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1442959020  47 SFALSRQVEDPARYRLLIGWRTLEDHTvAFRESESFLAWRALVTPHLAQLPAATHW 102
Cdd:COG1359    36 SYELYRDPDDPNRFVLYERWEDEAALE-AHLASPHFKAFLAALAPLLAEPPEVRVY 90
 
Name Accession Description Interval E-value
YgiN COG1359
Quinol monooxygenase YgiN [Energy production and conversion];
47-102 4.52e-04

Quinol monooxygenase YgiN [Energy production and conversion];


Pssm-ID: 440970  Cd Length: 91  Bit Score: 36.08  E-value: 4.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1442959020  47 SFALSRQVEDPARYRLLIGWRTLEDHTvAFRESESFLAWRALVTPHLAQLPAATHW 102
Cdd:COG1359    36 SYELYRDPDDPNRFVLYERWEDEAALE-AHLASPHFKAFLAALAPLLAEPPEVRVY 90
 
Name Accession Description Interval E-value
YgiN COG1359
Quinol monooxygenase YgiN [Energy production and conversion];
47-102 4.52e-04

Quinol monooxygenase YgiN [Energy production and conversion];


Pssm-ID: 440970  Cd Length: 91  Bit Score: 36.08  E-value: 4.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1442959020  47 SFALSRQVEDPARYRLLIGWRTLEDHTvAFRESESFLAWRALVTPHLAQLPAATHW 102
Cdd:COG1359    36 SYELYRDPDDPNRFVLYERWEDEAALE-AHLASPHFKAFLAALAPLLAEPPEVRVY 90
HmoA COG2329
Heme-degrading monooxygenase HmoA and related ABM domain proteins [Coenzyme transport and ...
 47-80 3.50e-03

Heme-degrading monooxygenase HmoA and related ABM domain proteins [Coenzyme transport and metabolism];


Pssm-ID: 441901  Cd Length: 98  Bit Score: 33.81  E-value: 3.50e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1442959020  47 SFALSRQVEDPARYRLLIGWRTLEDHTVAFRESE 80
Cdd:COG2329    37 GFELLRSLEDPGEYLVVSYWESEEAFRAWFRSSE 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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