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Conserved domains on  [gi|1431051562|ref|WP_114000936|]
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MULTISPECIES: PcfB family protein [Clostridia]

Protein Classification

PcfB family protein( domain architecture ID 10577413)

PcfB family protein is DUF3801 domain-containing protein; similar to Enterococcus faecalis PcfB which may play a part in a type IV secretion system conjugal transfer

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF3801 pfam12687
Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. ...
22-145 1.58e-30

Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.


:

Pssm-ID: 432720  Cd Length: 132  Bit Score: 107.36  E-value: 1.58e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431051562  22 QVFEKAVKKFLEEIQKsqkPKIYRGRQSLKQLASQNAGLANIEISDKNIKAFSRVAKKYHVDFALKKDTAAEQPRYLVFF 101
Cdd:pfam12687   2 KNLAALLKALLKKRDK---KKITKGKQSLKKLLKQGKGLKVIEITDEDLKDFKREAKKYGVDYAVKKDKSTKPGKYLVFF 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1431051562 102 KSRDADAITAAFQEFASRKMSR--EEKPSIRERLTQAKEQAAEKVE 145
Cdd:pfam12687  79 KAKDADAINRAFKEFSAKPLQKekEKKPSVRKKLEKFKERVKQTRA 124
 
Name Accession Description Interval E-value
DUF3801 pfam12687
Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. ...
22-145 1.58e-30

Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.


Pssm-ID: 432720  Cd Length: 132  Bit Score: 107.36  E-value: 1.58e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431051562  22 QVFEKAVKKFLEEIQKsqkPKIYRGRQSLKQLASQNAGLANIEISDKNIKAFSRVAKKYHVDFALKKDTAAEQPRYLVFF 101
Cdd:pfam12687   2 KNLAALLKALLKKRDK---KKITKGKQSLKKLLKQGKGLKVIEITDEDLKDFKREAKKYGVDYAVKKDKSTKPGKYLVFF 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1431051562 102 KSRDADAITAAFQEFASRKMSR--EEKPSIRERLTQAKEQAAEKVE 145
Cdd:pfam12687  79 KAKDADAINRAFKEFSAKPLQKekEKKPSVRKKLEKFKERVKQTRA 124
 
Name Accession Description Interval E-value
DUF3801 pfam12687
Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. ...
22-145 1.58e-30

Protein of unknown function (DUF3801); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 158 and 187 amino acids in length. This family includes the PcfB protein.


Pssm-ID: 432720  Cd Length: 132  Bit Score: 107.36  E-value: 1.58e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431051562  22 QVFEKAVKKFLEEIQKsqkPKIYRGRQSLKQLASQNAGLANIEISDKNIKAFSRVAKKYHVDFALKKDTAAEQPRYLVFF 101
Cdd:pfam12687   2 KNLAALLKALLKKRDK---KKITKGKQSLKKLLKQGKGLKVIEITDEDLKDFKREAKKYGVDYAVKKDKSTKPGKYLVFF 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1431051562 102 KSRDADAITAAFQEFASRKMSR--EEKPSIRERLTQAKEQAAEKVE 145
Cdd:pfam12687  79 KAKDADAINRAFKEFSAKPLQKekEKKPSVRKKLEKFKERVKQTRA 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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