NCBI Conserved Domain Search

zinc ABC transporter ATP-binding protein AztA;

22-228

8.64e-23

zinc ABC transporter ATP-binding protein AztA;

Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 96.15 E-value: 8.64e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGkellglsdhamsqirGRMIGTVFQdpMSA 101
Cdd:NF040873    6 PVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRP---TSGTVRRAG---------------GARVAYVPQ--RSE 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTPVYTIgdQIAEAIEI-------HSREISRADaRRRAVELLELVGIAQPERRARafpHELSGGERQRVVIAIAIANDPD 174
Cdd:NF040873   66 VPDSLPL--TVRDLVAMgrwarrgLWRRLTRDD-RAAVDDALERVGLADLAGRQL---GELSGGQRQRALLAQGLAQEAD 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 175 LLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEfADRALVM 228
Cdd:NF040873  140 LLLLDEPTTGLDAESRERIIALLAEEHA-RGATVVVVTHDLELVRR-ADPCVLL 191

oligo_HPY

TIGR01727

oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ...

234-318

2.84e-22

oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]

Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 91.27 E-value: 2.84e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 234 VEIAAVDELYRDRRMPYTVGLLGSVPRLdAAQGTRLIPIPGAPPTMTSLSPGaCTFAPRCPLAIDECLSAEPDLVRVADG 313
Cdd:TIGR01727   3 VETGPAEEIFKNPLHPYTKALLSAIPTI-KKRDRKLISIPGEVPSLINLPSG-CRFYPRCPYAQDECRKEPPALVEIAEG 80


                  ....*
gi 1424538268 314 HWAAC 318
Cdd:TIGR01727  81 HRVAC 85

oligo_HPY

pfam08352

Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ...

234-300

1.64e-16

Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 73.97 E-value: 1.64e-16

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 234 VEIAAVDELYRDRRMPYTVGLLGSVPRLDAAQgTRLIPIPGAPPTMTSLSPGaCTFAPRCPLAIDEC 300
Cdd:pfam08352   1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPK-RPLYTIPGNVPSLLELPEG-CPFAPRCPFATEEC 65

AztA

zinc ABC transporter ATP-binding protein AztA;

382-573

2.24e-15

zinc ABC transporter ATP-binding protein AztA;

Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 74.58 E-value: 2.24e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIeilgtdvavldaaaRRRLRTELQVVFQDpvASLDPRLP-- 459
Cdd:NF040873   10 GVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV--------------RRAGGARVAYVPQR--SEVPDSLPlt 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIA----EPLRANGFHRHECEERVAELLAVVGLdHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV 535
Cdd:NF040873   74 VRDLVAmgrwARRGLWRRLTRDDRAAVDDALERVGL-ADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDA 152

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1424538268 536 SIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRV 573
Cdd:NF040873  153 ESRERIIALLAEEHAR-GATVVVVTHDLELVRRADPCV 189

GguA

sugar ABC transporter ATP-binding protein;

21-235

1.40e-14

sugar ABC transporter ATP-binding protein;

Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 76.37 E-value: 1.40e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeYARVSGSIRLHGkELLGLSDHAMSQIRGrmIGTVFQDpmS 100
Cdd:NF040905   14 VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYP-HGSYEGEILFDG-EVCRFKDIRDSEALG--IVIIHQE--L 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 ALTPVYTIGDQIAEAIEIHSRE-ISRADARRRAVELLELVGIAQPerrarafPHELSG----GERQRVVIAIAIANDPDL 175
Cdd:NF040905   88 ALIPYLSIAENIFLGNERAKRGvIDWNETNRRARELLAKVGLDES-------PDTLVTdigvGKQQLVEIAKALSKDVKL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 176 LICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:NF040905  161 LILDEPTAALNEEDSAALLDLLLELKA-QGITSIIISHKLNEIRRVADSITVLRDGRTIE 219

40850658_otr

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;

20-242

4.27e-14

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;

Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 74.00 E-value: 4.27e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARvsgsiRLHGKELLGLSDHAMSQIRG--RMIGTVFQD 97
Cdd:NF000106   25 EVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAGR-----RPWRF*TWCANRRALRRTIG*hRPVR*GRRE 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  98 PMSALTPVYTIGDQIaeaieihsrEISRADARRRAVELLELVGIAQPERRARAfphELSGGERQRVVIAIAIANDPDLLI 177
Cdd:NF000106  100 SFSGRENLYMIGR*L---------DLSRKDARARADELLERFSLTEAAGRAAA---KYSGGMRRRLDLAASMIGRPAVLY 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 178 CDEPTTALDVTVQAQILDVLRT-ARDvtGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:NF000106  168 LDEPTTGLDPRTRNEVWDEVRSmVRD--GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231

ABC2_perm_RbbA

ribosome-associated ATPase/putative transporter RbbA;

381-529

5.23e-12

ribosome-associated ATPase/putative transporter RbbA;

Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 69.00 E-value: 5.23e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAARRRLRTElqvvfqdpVA-------- 452
Cdd:NF033858   18 DDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMA--DARHRRAVCPR--------IAympqglgk 87

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 453 SLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRyPA-EFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:NF033858   88 NLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLA-PFADR-PAgKLSGGMKQKLGLCCALIHDPDLLILDEP 163

ABC2_perm_RbbA

ribosome-associated ATPase/putative transporter RbbA;

112-560

1.53e-11

ribosome-associated ATPase/putative transporter RbbA;

Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 67.46 E-value: 1.53e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 112 IAEAIEIHSR--EISRADARRRAVELLELVGIAQ-PERRARafphELSGGERQRVVIAIAIANDPDLLICDEPTTALDVT 188
Cdd:NF033858   95 VFENLDFFGRlfGQDAAERRRRIDELLRATGLAPfADRPAG----KLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPL 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 189 VQAQ---ILDVLRTARDvtGAAVLIITHDLGVVSEFaDRALVMYAGR------PVEIAA------VDELYrdrrmpytVG 253
Cdd:NF033858  171 SRRQfweLIDRIRAERP--GMSVLVATAYMEEAERF-DWLVAMDAGRvlatgtPAELLArtgadtLEAAF--------IA 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 254 LLGSVPRldaaQGTRLIPIPgapptmtslspgactfaPRCPLAIDEclsaepdlvrVAdghwaacIRTDDVAGRsaadvF 333
Cdd:NF033858  240 LLPEEKR----RGHQPVVIP-----------------PRPADDDDE----------PA-------IEARGLTMR-----F 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 334 GvstqpppnnaaggqppvvlrvsDLTktyrltkgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILEL 413
Cdd:NF033858  277 G----------------------DFT-------------------AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGL 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 414 TKPEAGSIEILGTDVAVLDAAARRR---------LRTELqVVFQDPVasLDPRLpvydviaeplrangFH--RHECEERV 482
Cdd:NF033858  316 LPASEGEAWLFGQPVDAGDIATRRRvgymsqafsLYGEL-TVRQNLE--LHARL--------------FHlpAAEIAARV 378

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 483 AELLAVVGL-DHSDAsrYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSyLFVS 560
Cdd:NF033858  379 AEMLERFDLaDVADA--LPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVT-IFIS 454

GguA

sugar ABC transporter ATP-binding protein;

381-583

4.89e-11

sugar ABC transporter ATP-binding protein;

Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 65.20 E-value: 4.89e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTtLNQILELTKPeAGSIE--IlgtdvaVLDAAARRrlrtelqvvFQDPVAS----- 453
Cdd:NF040905   18 DDVNLSVREGEIHALCGENGAGKST-LMKVLSGVYP-HGSYEgeI------LFDGEVCR---------FKDIRDSealgi 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 454 --------LDPRLPVYDVI---AEPLRANGFHRHECEERVAELLAVVGLDHSDASRYpAEFSGGQKQRIGIARALALQPK 522
Cdd:NF040905   81 viihqelaLIPYLSIAENIflgNERAKRGVIDWNETNRRARELLAKVGLDESPDTLV-TDIGVGKQQLVEIAKALSKDVK 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 523 ILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVE 583
Cdd:NF040905  160 LLILDEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDGRTIE 219

GguA

sugar ABC transporter ATP-binding protein;

4-232

4.65e-10

sugar ABC transporter ATP-binding protein;

Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 62.11 E-value: 4.65e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVtFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGllPEYAR-VSGSIRLHGKEL------- 75
Cdd:NF040905  257 VFEVKNWTV-YHPLHPERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFG--RSYGRnISGTVFKDGKEVdvstvsd 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  76 ---------------LGLsdHAMSQIRgRMIgtvfqdPMSALTPVYTIGdQIAEAIEIHSREISRADARRRAVELLELVG 140
Cdd:NF040905  334 aidaglayvtedrkgYGL--NLIDDIK-RNI------TLANLGKVSRRG-VIDENEEIKVAEEYRKKMNIKTPSVFQKVG 403

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 141 iaqperrarafphELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSE 220
Cdd:NF040905  404 -------------NLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAA-EGKGVIVISSELPELLG 469

                         250
                  ....*....|..
gi 1424538268 221 FADRALVMYAGR 232
Cdd:NF040905  470 MCDRIYVMNEGR 481

40850658_otr

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;

475-616

1.45e-09

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;

Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 60.13 E-value: 1.45e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 475 RHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGL 554
Cdd:NF000106  118 RKDARARADELLERFSLTEA-AGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GA 195

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 555 SYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTN---------PQHEYT-RRLLAAVPRAHSDVASG 616
Cdd:NF000106  196 TVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKvggrtlqirPAHAAElDRMVGAIAQAGLDGIAG 267

ABC2_perm_RbbA

ribosome-associated ATPase/putative transporter RbbA;

23-186

4.34e-08

ribosome-associated ATPase/putative transporter RbbA;

Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 56.29 E-value: 4.34e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  23 AVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELlGLSDHA-------MSQ---IRGRMig 92
Cdd:NF033858  281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPA---SEGEAWLFGQPV-DAGDIAtrrrvgyMSQafsLYGEL-- 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  93 TVFQDpmsaltpvytigdqiaeaIEIHSR--EISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIA 170
Cdd:NF033858  355 TVRQN------------------LELHARlfHLPAAEIAARVAEMLERFDLAD---VADALPDSLPLGIRQRLSLAVAVI 413

                         170
                  ....*....|....*.
gi 1424538268 171 NDPDLLICDEPTTALD 186
Cdd:NF033858  414 HKPELLILDEPTSGVD 429

AAA

smart00382

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...

33-236

1.46e-07

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 1.46e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   33 PGEVLAIVGESGCGKTTAALAVIGLLPEYARVSgsirlhgkellglsdhamsqirgrmigtvfqdpmsaltpVYTIGDQI 112
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV---------------------------------------IYIDGEDI 41

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  113 AEAIEIHSREISRADarrravellelvgiaqperraraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQ 192
Cdd:smart00382  42 LEEVLDQLLLIIVGG-----------------------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL 98

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1424538268  193 ILDVLRTARDV-----TGAAVLIITHDlgvVSEFADRALVMYAGRPVEI 236
Cdd:smart00382  99 LLLLEELRLLLllkseKNLTVILTTND---EKDLGPALLRRRFDRRIVL 144

Name

Accession

Description

Interval

E-value

YejF

COG4172

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ...

1-608

0e+00

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 717.23 E-value: 0e+00

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPE-YARVSGSIRLHGKELLGLS 79
Cdd:COG4172     3 SMPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDpAAHPSGSILFDGQDLLGLS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 DHAMSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHsREISRADARRRAVELLELVGIAQPERRARAFPHELSGGE 159
Cdd:COG4172    83 ERELRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLH-RGLSGAAARARALELLERVGIPDPERRLDAYPHQLSGGQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAV 239
Cdd:COG4172   162 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 240 DELYRDRRMPYTVGLLGSVPRLDAAqgtrlipipgapptmtslspgactfaprcplaideclsaepdlvrvadghwaaci 319
Cdd:COG4172   242 AELFAAPQHPYTRKLLAAEPRGDPR------------------------------------------------------- 266

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 320 rtddvagrsaadvfgvstqPPPNNAaggqpPVVLRVSDLTKTYRLTKGvVVRRRVGEVRAVDGISFTLEQGRTLGIVGES 399
Cdd:COG4172   267 -------------------PVPPDA-----PPLLEARDLKVWFPIKRG-LFRRTVGHVKAVDGVSLTLRRGETLGLVGES 321

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 400 GSGKSTTLNQILELTKPEaGSIEILGTDVAVLDAAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLRANGFH--RHE 477
Cdd:COG4172   322 GSGKSTLGLALLRLIPSE-GEIRFDGQDLDGLSRRALRPLRRRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHGPGlsAAE 400

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 478 CEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYL 557
Cdd:COG4172   401 RRARVAEALEEVGLDPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYL 480

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 558 FVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPR 608
Cdd:COG4172   481 FISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAPQHPYTRALLAAAPL 531

GsiA

COG1123

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...

1-610

0e+00

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 640.80 E-value: 0e+00

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKELLGLSD 80
Cdd:COG1123     1 MTPLLEVRDLSVRYPGGD--VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGRISGEVLLDGRDLLELSE 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 hamsQIRGRMIGTVFQDPMSALTPVyTIGDQIAEAIEIhsREISRADARRRAVELLELVGIaqpERRARAFPHELSGGER 160
Cdd:COG1123    79 ----ALRGRRIGMVFQDPMTQLNPV-TVGDQIAEALEN--LGLSRAEARARVLELLEAVGL---ERRLDRYPHQLSGGQR 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVD 240
Cdd:COG1123   149 QRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPE 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 241 ELYRDRRMpytvglLGSVPRLDAAQGTRLIPIPGAPPtmtslspgactfaprcplaideclsaepdlvrvadghwaacir 320
Cdd:COG1123   229 EILAAPQA------LAAVPRLGAARGRAAPAAAAAEP------------------------------------------- 259

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 321 tddvagrsaadvfgvstqpppnnaaggqppvVLRVSDLTKTYRLTKGVVVRRRvgevravDGISFTLEQGRTLGIVGESG 400
Cdd:COG1123   260 -------------------------------LLEVRNLSKRYPVRGKGGVRAV-------DDVSLTLRRGETLGLVGESG 301

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 401 SGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLRANGFH-RHECE 479
Cdd:COG1123   302 SGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRELRRRVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLsRAERR 381

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 480 ERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFV 559
Cdd:COG1123   382 ERVAELLERVGLPPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFI 461

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 560 SHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPRAH 610
Cdd:COG1123   462 SHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQHPYTRALLAAVPSLD 512

DppD

COG0444

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...

4-325

2.18e-172

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];

Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 492.26 E-value: 2.18e-172

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKELLGLSDHAM 83
Cdd:COG0444     1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGITSGEILFDGEDLLKLSEKEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHsREISRADARRRAVELLELVGIAQPERRARAFPHELSGGERQRV 163
Cdd:COG0444    81 RKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIH-GGLSKAEARERAIELLERVGLPDPERRLDRYPHELSGGMRQRV 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELY 243
Cdd:COG0444   160 MIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELF 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 244 RDRRMPYTVGLLGSVPRLDAAqGTRLIPIPGAPPTMTSLSPGaCTFAPRCPLAIDECLSAEPDLVRVADGHWAACIRTDD 323
Cdd:COG0444   240 ENPRHPYTRALLSSIPRLDPD-GRRLIPIPGEPPSLLNPPSG-CRFHPRCPYAMDRCREEEPPLREVGPGHRVACHLYEE 317


                  ..
gi 1424538268 324 VA 325
Cdd:COG0444   318 EA 319

PRK10261

glutathione transporter ATP-binding protein; Provisional

4-609

1.78e-158

glutathione transporter ATP-binding protein; Provisional

Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 468.57 E-value: 1.78e-158

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARV--SGSIRLHGK-----ELL 76
Cdd:PRK10261   12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLvqCDKMLLRRRsrqviELS 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  77 GLSDHAMSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHsREISRADARRRAVELLELVGIAQPERRARAFPHELS 156
Cdd:PRK10261   92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH-QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEI 236
Cdd:PRK10261  171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 237 AAVDELYRDRRMPYTVGLLGSVPRLDAAQGTRLipipgapptmtslspgactfAPRCPL-AIDECLSAEPdlvrvadghw 315
Cdd:PRK10261  251 GSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDY--------------------PRRFPLiSLEHPAKQEP---------- 300

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 316 aacirtddvagrsaadvfgvstQPPPNNAAGGQPpvVLRVSDLTKTYRLTKGVVVRRRVGEVRAvDGISFTLEQGRTLGI 395
Cdd:PRK10261  301 ----------------------PIEQDTVVDGEP--ILQVRNLVTRFPLRSGLLNRVTREVHAV-EKVSFDLWPGETLSL 355

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 396 VGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLRANGF-H 474
Cdd:PRK10261  356 VGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLlP 435

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 475 RHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGL 554
Cdd:PRK10261  436 GKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 555 SYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPRA 609
Cdd:PRK10261  516 AYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVPVA 570

PRK15134

microcin C ABC transporter ATP-binding protein YejF; Provisional

2-604

4.01e-151

microcin C ABC transporter ATP-binding protein YejF; Provisional

Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 446.07 E-value: 4.01e-151

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   2 TAVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARV--SGSIRLHGKELLGLS 79
Cdd:PRK15134    3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVypSGDIRFHGESLLHAS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 DHAMSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHsREISRADARRRAVELLELVGIAQPERRARAFPHELSGGE 159
Cdd:PRK15134   83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH-RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAV 239
Cdd:PRK15134  162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 240 DELYRDRRMPYTVGLLGSVPRldaaqgtrlipipGAPPtmtslspgactfaprcPLAIDEclsaepdlvrvadghwaaci 319
Cdd:PRK15134  242 ATLFSAPTHPYTQKLLNSEPS-------------GDPV----------------PLPEPA-------------------- 272

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 320 rtddvagrsaadvfgvstqpppnnaaggqpPVVLRVSDLTKTYRLTKGVVVRRRVGEVRAVDgISFTLEQGRTLGIVGES 399
Cdd:PRK15134  273 ------------------------------SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKN-ISFTLRPGETLGLVGES 321

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 400 GSGKSTTLNQILELTKPEaGSIEILGTDVAVLDAAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLRAN--GFHRHE 477
Cdd:PRK15134  322 GSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHqpTLSAAQ 400

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 478 CEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYL 557
Cdd:PRK15134  401 REQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYL 480

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*..
gi 1424538268 558 FVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLA 604
Cdd:PRK15134  481 FISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLA 527

AppF

COG4608

ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ...

346-610

1.36e-131

ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 388.71 E-value: 1.36e-131

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 346 GGQPPVVLRVSDLTKTYRLTKGVVVRRRVGEVRAvDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILG 425
Cdd:COG4608     1 AAMAEPLLEVRDLKKHFPVRGGLFGRTVGVVKAV-DGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 426 TDVAVLDAAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLRANGFH-RHECEERVAELLAVVGLDHSDASRYPAEFS 504
Cdd:COG4608    80 QDITGLSGRELRPLRRRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLAsKAERRERVAELLELVGLRPEHADRYPHEFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 505 GGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQ 584
Cdd:COG4608   160 GGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEI 239

                         250       260
                  ....*....|....*....|....*.
gi 1424538268 585 GESDQVFTNPQHEYTRRLLAAVPRAH 610
Cdd:COG4608   240 APRDELYARPLHPYTQALLSAVPVPD 265

DppD

COG0444

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...

352-612

9.79e-114

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];

Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 342.42 E-value: 9.79e-114

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEA---GSIEILGTDV 428
Cdd:COG0444     1 LLEVRNLKVYFPTRRGVVKAV--------DGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGitsGEILFDGEDL 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 429 AVLDAAARRRLR-TELQVVFQDPVASLDPRLPVYDVIAEPLRA-NGFHRHECEERVAELLAVVGLDHSD--ASRYPAEFS 504
Cdd:COG0444    73 LKLSEKELRKIRgREIQMIFQDPMTSLNPVMTVGDQIAEPLRIhGGLSKAEARERAIELLERVGLPDPErrLDRYPHELS 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 505 GGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQ 584
Cdd:COG0444   153 GGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEE 232

                         250       260
                  ....*....|....*....|....*...
gi 1424538268 585 GESDQVFTNPQHEYTRRLLAAVPRAHSD 612
Cdd:COG0444   233 GPVEELFENPRHPYTRALLSSIPRLDPD 260

oppD

PRK09473

oligopeptide transporter ATP-binding component; Provisional

1-320

1.39e-110

oligopeptide transporter ATP-binding component; Provisional

Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 334.77 E-value: 1.39e-110

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKELLGLSD 80
Cdd:PRK09473    9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHSReISRADARRRAVELLELVGIAQPERRARAFPHELSGGER 160
Cdd:PRK09473   89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG-MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVD 240
Cdd:PRK09473  168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 241 ELYRDRRMPYTVGLLGSVPRLDaAQGTRLIPIPGAPPTMTSLsPGACTFAPRCPLAIDECLSAePDLVRVADGHWAACIR 320
Cdd:PRK09473  248 DVFYQPSHPYSIGLLNAVPRLD-AEGESLLTIPGNPPNLLRL-PKGCPFQPRCPHAMEICSSA-PPLEEFGPGRLRACFK 324

AppF

COG4608

ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ...

1-326

1.22e-107

ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 327.07 E-value: 1.22e-107

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFE-------TEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGK 73
Cdd:COG4608     4 AEPLLEVRDLKKHFPvrgglfgRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRL---EEPTSGEILFDGQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  74 ELLGLSDHAMSQIRgRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHsREISRADARRRAVELLELVGIAqPERRARaFPH 153
Cdd:COG4608    81 DITGLSGRELRPLR-RRMQMVFQDPYASLNPRMTVGDIIAEPLRIH-GLASKAERRERVAELLELVGLR-PEHADR-YPH 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 154 ELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRP 233
Cdd:COG4608   157 EFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKI 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 234 VEIAAVDELYRDRRMPYTVGLLGSVPRLDAAQGTRLIPIPGAPPTMTSLSPGaCTFAPRCPLAIDECLSAEPDLVRVADG 313
Cdd:COG4608   237 VEIAPRDELYARPLHPYTQALLSAVPVPDPERRRERIVLEGDVPSPLNPPSG-CRFHTRCPYAQDRCATEEPPLREVGPG 315

                         330
                  ....*....|...
gi 1424538268 314 HWAACIRTDDVAG 326
Cdd:COG4608   316 HQVACHLAEEGSG 328

ABC_NikE_OppD_transporters

cd03257

ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ...

4-237

3.24e-107

Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 322.15 E-value: 3.24e-107

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLpeyARVSGSIRLHGKELLGLSDhAM 83
Cdd:cd03257     1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL---KPTSGSIIFDGKDLLKLSR-RL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHSREISRADARRRAVELLELVGiaQPERRARAFPHELSGGERQRV 163
Cdd:cd03257    77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVG--LPEEVLNRYPHELSGGQRQRV 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIA 237
Cdd:cd03257   155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228

dppF

PRK11308

dipeptide transporter ATP-binding subunit; Provisional

348-612

1.21e-101

dipeptide transporter ATP-binding subunit; Provisional

Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 311.90 E-value: 1.21e-101

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 348 QPPVVLRVSDLTKTYRLTKGVVVRRRVGEVRavDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTD 427
Cdd:PRK11308    1 SQQPLLQAIDLKKHYPVKRGLFKPERLVKAL--DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 428 VAVLDAAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLRAN-GFHRHECEERVAELLAVVGLDHSDASRYPAEFSGG 506
Cdd:PRK11308   79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINtSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 507 QKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGE 586
Cdd:PRK11308  159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238

                         250       260
                  ....*....|....*....|....*.
gi 1424538268 587 SDQVFTNPQHEYTRRLLAAVPRAHSD 612
Cdd:PRK11308  239 KEQIFNNPRHPYTQALLSATPRLNPD 264

ABC_NikE_OppD_transporters

cd03257

ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ...

352-585

3.86e-101

Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 306.74 E-value: 3.86e-101

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL 431
Cdd:cd03257     1 LLEVKNLSVSFPTGGGSVKAL--------DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKL 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLRANGFHRHECE--ERVAELLAVVGLDHSDASRYPAEFSGGQKQ 509
Cdd:cd03257    73 SRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEArkEAVLLLLVGVGLPEEVLNRYPHELSGGQRQ 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 510 RIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03257   153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228

DppF

COG1124

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...

353-608

3.00e-98

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];

Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 300.18 E-value: 3.00e-98

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRltkgvvvrRRVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvld 432
Cdd:COG1124     2 LEVRNLSVSYG--------QGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVT--- 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLRANGFHRHEceERVAELLAVVGLDHSDASRYPAEFSGGQKQRIG 512
Cdd:COG1124    71 RRRRKAFRRRVQMVFQDPYASLHPRHTVDRILAEPLRIHGLPDRE--ERIAELLEQVGLPPSFLDRYPHQLSGGQRQRVA 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 513 IARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:COG1124   149 IARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228

                         250
                  ....*....|....*.
gi 1424538268 593 NPQHEYTRRLLAAVPR 608
Cdd:COG1124   229 GPKHPYTRELLAASLA 244

PRK15079

oligopeptide ABC transporter ATP-binding protein OppF; Provisional

381-607

2.57e-97

oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 300.85 E-value: 2.57e-97

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDPVASLDPRLPV 460
Cdd:PRK15079   38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTI 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRAngFH----RHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK15079  118 GEIIAEPLRT--YHpklsRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVP 607
Cdd:PRK15079  196 IQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVP 266

GsiA

COG1123

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...

2-264

3.21e-92

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 293.73 E-value: 3.21e-92

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   2 TAVLEVTDLNVTFETEDI-EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSD 80
Cdd:COG1123   258 EPLLEVRNLSKRYPVRGKgGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLR---PTSGSILFDGKDLTKLSR 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRgRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHsREISRADARRRAVELLELVGIaqPERRARAFPHELSGGER 160
Cdd:COG1123   335 RSLRELR-RRVQMVFQDPYSSLNPRMTVGDIIAEPLRLH-GLLSRAERRERVAELLERVGL--PPDLADRYPHELSGGQR 410

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVD 240
Cdd:COG1123   411 QRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTE 490

                         250       260
                  ....*....|....*....|....
gi 1424538268 241 ELYRDRRMPYTVGLLGSVPRLDAA 264
Cdd:COG1123   491 EVFANPQHPYTRALLAAVPSLDPA 514

dppD

PRK11022

dipeptide transporter ATP-binding subunit; Provisional

3-327

1.12e-88

dipeptide transporter ATP-binding subunit; Provisional

Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 278.16 E-value: 1.12e-88

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSG-SIRLHGKELLGLSDH 81
Cdd:PRK11022    2 ALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAeKLEFNGQDLQRISEK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  82 AMSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHSREiSRADARRRAVELLELVGIAQPERRARAFPHELSGGERQ 161
Cdd:PRK11022   82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGG-NKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDE 241
Cdd:PRK11022  161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 242 LYRDRRMPYTVGLLGSVPRLdAAQGTRLIPIPGAPPTMTSlSPGACTFAPRCPLAIDECLSAEPDLvRVADGHWAACIRT 321
Cdd:PRK11022  241 IFRAPRHPYTQALLRALPEF-AQDKARLASLPGVVPGKYD-RPNGCLLNPRCPYATDRCRAEEPAL-NMLAGRQSKCHYP 317


                  ....*.
gi 1424538268 322 DDVAGR 327
Cdd:PRK11022  318 LDDAGR 323

DppF

COG1124

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...

5-264

4.75e-81

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];

Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 255.50 E-value: 4.75e-81

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAMs 84
Cdd:COG1124     2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPW---SGEVTFDGRPVTRRRRKAF- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qiRGRmIGTVFQDPMSALTPVYTIGDQIAEAIEIHSReisrADARRRAVELLELVGIaqPERRARAFPHELSGGERQRVV 164
Cdd:COG1124    78 --RRR-VQMVFQDPYASLHPRHTVDRILAEPLRIHGL----PDREERIAELLEQVGL--PPSFLDRYPHQLSGGQRQRVA 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYR 244
Cdd:COG1124   149 IARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228

                         250       260
                  ....*....|....*....|
gi 1424538268 245 DRRMPYTVGLLGSVPRLDAA 264
Cdd:COG1124   229 GPKHPYTRELLAASLAFERA 248

SapF

COG4167

ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];

353-605

4.00e-80

ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];

Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 253.61 E-value: 4.00e-80

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVVVRRRVGEVravDGISFTLEQGRTLGIVGESGSGKSTtLNQILE-LTKPEAGSIEILGTDVAVL 431
Cdd:COG4167     5 LEVRNLSKTFKYRTGLFRRQQFEAV---KPVSFTLEAGQTLAIIGENGSGKST-LAKMLAgIIEPTSGEILINGHKLEYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAARRRLrteLQVVFQDPVASLDPRLPVYDVIAEPLRAN-GFHRHECEERVAELLAVVGL--DHsdASRYPAEFSGGQK 508
Cdd:COG4167    81 DYKYRCKH---IRMIFQDPNTSLNPRLNIGQILEEPLRLNtDLTAEEREERIFATLRLVGLlpEH--ANFYPHMLSSGQK 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 509 QRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESD 588
Cdd:COG4167   156 QRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTA 235

                         250
                  ....*....|....*..
gi 1424538268 589 QVFTNPQHEYTRRLLAA 605
Cdd:COG4167   236 EVFANPQHEVTKRLIES 252

YejF

COG4172

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ...

4-262

5.97e-80

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 261.93 E-value: 5.97e-80

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFET-------EDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyarVSGSIRLHGKELL 76
Cdd:COG4172   275 LLEARDLKVWFPIkrglfrrTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP----SEGEIRFDGQDLD 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  77 GLSDHAMSQIRGRM-IgtVFQDPMSALTPVYTIGDQIAEAIEIHSREISRADARRRAVELLELVGIAqPERRARaFPHEL 155
Cdd:COG4172   351 GLSRRALRPLRRRMqV--VFQDPFGSLSPRMTVGQIIAEGLRVHGPGLSAAERRARVAEALEEVGLD-PAARHR-YPHEF 426

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 156 SGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:COG4172   427 SGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVE 506

                         250       260
                  ....*....|....*....|....*..
gi 1424538268 236 IAAVDELYRDRRMPYTVGLLGSVPRLD 262
Cdd:COG4172   507 QGPTEQVFDAPQHPYTRALLAAAPLLE 533

PRK15079

oligopeptide ABC transporter ATP-binding protein OppF; Provisional

4-324

2.11e-77

oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 249.24 E-value: 2.11e-77

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETED---------IEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKE 74
Cdd:PRK15079    8 LLEVADLKVHFDIKDgkqwfwqppKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLGKD 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  75 LLGLSDHAMSQIRgRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHSREISRADARRRAVELLELVGIAqPERRARaFPHE 154
Cdd:PRK15079   85 LLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL-PNLINR-YPHE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 LSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:PRK15079  162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 235 EIAAVDELYRDRRMPYTVGLLGSV----PRLDAAQGTRL----IPIPGAPPTmtslspgACTFAPRCPLAIDECLSAEPD 306
Cdd:PRK15079  242 ELGTYDEVYHNPLHPYTKALMSAVpipdPDLERNKTIQLlegeLPSPINPPS-------GCVFRTRCPIAGPECAKTRPV 314

                         330
                  ....*....|....*...
gi 1424538268 307 LvRVADGHWAACIRTDDV 324
Cdd:PRK15079  315 L-EGSFRHAVSCLKVDPL 331

SapD

COG4170

ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];

3-318

1.24e-75

ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];

Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 244.43 E-value: 1.24e-75

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGS-IRLHGKELLGLSDH 81
Cdd:COG4170     2 PLLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNWHVTADrFRWNGIDLLKLSPR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  82 AMSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAI---EIHSREISRADAR-RRAVELLELVGIAQPERRARAFPHELSG 157
Cdd:COG4170    82 ERRKIIGREIAMIFQEPSSCLDPSAKIGDQLIEAIpswTFKGKWWQRFKWRkKRAIELLHRVGIKDHKDIMNSYPHELTE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIA 237
Cdd:COG4170   162 GECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 238 AVDELYRDRRMPYTVGLLGSVP--RLDAAQGTRLIPIPGAPPTMTSLsPGACTFAPRCPLAIDECLSAePDLVRVaDGHW 315
Cdd:COG4170   242 PTEQILKSPHHPYTKALLRSMPdfRQPLPHKSRLNTLPGSIPPLQHL-PIGCRLGPRCPYAQKKCVET-PRLRKI-KGHE 318


                  ...
gi 1424538268 316 AAC 318
Cdd:COG4170   319 FAC 321

dppF

PRK11308

dipeptide transporter ATP-binding subunit; Provisional

1-329

2.03e-75

dipeptide transporter ATP-binding subunit; Provisional

Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 243.72 E-value: 2.03e-75

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFE------TEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIglLPEyARVSGSIRLHGKE 74
Cdd:PRK11308    2 QQPLLQAIDLKKHYPvkrglfKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT--MIE-TPTGGELYYQGQD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  75 LLGLSDHAMSQIRgRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHSrEISRADARRRAVELLELVGIaQPERRARaFPHE 154
Cdd:PRK11308   79 LLKADPEAQKLLR-QKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-SLSAAERREKALAMMAKVGL-RPEHYDR-YPHM 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 LSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:PRK11308  155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 235 EIAAVDELYRDRRMPYTVGLLGSVPRLDAAQGTRLIPIPGAPPTMTSLSPGaCTFAPRCPLAIDECLSAEPDLvRVADGH 314
Cdd:PRK11308  235 EKGTKEQIFNNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPG-CAFNARCPRAFGRCRQEQPQL-RDYDGR 312

                         330
                  ....*....|....*
gi 1424538268 315 WAACIRTDDVAGRSA 329
Cdd:PRK11308  313 LVACFAVEQDENPQA 327

AbcC

COG1135

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];

353-608

9.67e-73

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 236.90 E-value: 9.67e-73

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKST---TLNQiLEltKPEAGSIEILGTDVA 429
Cdd:COG1135     2 IELENLSKTFPTKGGPVTAL--------DDVSLTIEKGEIFGIIGYSGAGKSTlirCINL-LE--RPTSGSVLVDGVDLT 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 430 VLDAAARRRLRTELQVVFQDpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGL-DHSDAsrYPAEFSGGQK 508
Cdd:COG1135    71 ALSERELRAARRKIGMIFQH--FNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLsDKADA--YPSQLSGGQK 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 509 QRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESD 588
Cdd:COG1135   147 QRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVL 226

                         250       260
                  ....*....|....*....|
gi 1424538268 589 QVFTNPQHEYTRRLLAAVPR 608
Cdd:COG1135   227 DVFANPQSELTRRFLPTVLN 246

ABC_MetN_methionine_transporter

cd03258

ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ...

352-595

4.55e-69

ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 223.61 E-value: 4.55e-69

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL 431
Cdd:cd03258     1 MIELKNVSKVFGDTGGKVTAL--------KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLL 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAARRRLRTELQVVFQDpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRI 511
Cdd:cd03258    73 SGKELRKARRRIGMIFQH--FNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-ADAYPAQLSGGQKQRV 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 512 GIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVF 591
Cdd:cd03258   150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229


                  ....
gi 1424538268 592 TNPQ 595
Cdd:cd03258   230 ANPQ 233

nickel_nikE

TIGR02769

nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ...

352-610

5.08e-69

Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 224.68 E-value: 5.08e-69

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRlTKGVVVRRRVGEVRavDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL 431
Cdd:TIGR02769   2 LLEVRDVTHTYR-TGGLFGAKQRAPVL--TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLR-ANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQR 510
Cdd:TIGR02769  79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRhLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 511 IGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238

                         250       260
                  ....*....|....*....|
gi 1424538268 591 FTNpQHEYTRRLLAAVPRAH 610
Cdd:TIGR02769 239 LSF-KHPAGRNLQSAVLPEH 257

nickel_nikD

TIGR02770

nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ...

23-256

6.55e-69

nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]

Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 223.40 E-value: 6.55e-69

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  23 AVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEYARVSGSIRLHGKELLGLSdhamsqIRGRMIGTVFQDPMSA 101
Cdd:TIGR02770   1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLpPGLTQTSGEILLDGRPLLPLS------IRGRHIATIMQNPRTA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTPVYTIGDQIAEAIEIHsrEISRADARRRAVELLELVGIAQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:TIGR02770  75 FNPLFTMGNHAIETLRSL--GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 182 TTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLG 256
Cdd:TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227

GsiA

COG1123

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...

352-611

2.42e-68

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 230.95 E-value: 2.42e-68

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRltkgvvvrrrVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEA---GSIEILGTDV 428
Cdd:COG1123     4 LLEVRDLSVRYP----------GGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 429 AVLDAAARRRlrtELQVVFQDPVASLDPrLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQK 508
Cdd:COG1123    74 LELSEALRGR---RIGMVFQDPMTQLNP-VTVGDQIAEALENLGLSRAEARARVLELLEAVGLERR-LDRYPHQLSGGQR 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 509 QRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESD 588
Cdd:COG1123   149 QRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPE 228

                         250       260
                  ....*....|....*....|...
gi 1424538268 589 QVFTNPQheytrrLLAAVPRAHS 611
Cdd:COG1123   229 EILAAPQ------ALAAVPRLGA 245

PhnK

COG4107

ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and ...

352-606

3.80e-67

ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and metabolism];

Pssm-ID: 443283 [Multi-domain] Cd Length: 262 Bit Score: 219.68 E-value: 3.80e-67

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYrltkgvvvRRRVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILG-----T 426
Cdd:COG4107     8 LLSVRGLSKRY--------GPGCGTVVACRDVSFDLYPGEVLGIVGESGSGKSTLLKCLYFDLAPTSGSVYYRDrdggpR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 427 DVAVLDAAARRRL-RTELQVVFQDPVASLDPRLPVYDVIAEPLRANGfHRH--ECEERVAELLAVVGLDHSDASRYPAEF 503
Cdd:COG4107    80 DLFALSEAERRRLrRTDWGMVYQNPRDGLRMDVSAGGNIAERLMAAG-ERHygDIRARALEWLERVEIPLERIDDLPRTF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 504 SGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVE 583
Cdd:COG4107   159 SGGMQQRVQIARALVTNPRLLFLDEPTTGLDVSVQARLLDLIRRLQRELGLSMIVVTHDLGVIRLLADRTMVMKNGRVVE 238

                         250       260
                  ....*....|....*....|...
gi 1424538268 584 QGESDQVFTNPQHEYTRRLLAAV 606
Cdd:COG4107   239 SGLTDQVLEDPQHPYTQLLVSSV 261

LolD

COG1136

ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];

1-238

1.16e-66

ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 217.22 E-value: 1.16e-66

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLL--PEyarvSGSIRLHGKELLGL 78
Cdd:COG1136     1 MSPLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTL-LNILGGLdrPT----SGEVLIDGQDISSL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  79 SDHAMSQIRGRMIGTVFQDPmsALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQperRARAFPHELSGG 158
Cdd:COG1136    76 SERELARLRRRHIGFVFQFF--NLLPELTALENVALPLLL--AGVSRKERRERARELLERVGLGD---RLDHRPSQLSGG 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLgVVSEFADRALVMYAGRPVEIAA 238
Cdd:COG1136   149 QQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDP-ELAARADRVIRLRDGRIVSDER 227

PRK15093

peptide ABC transporter ATP-binding protein SapD;

4-318

3.73e-65

peptide ABC transporter ATP-binding protein SapD;

Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 216.98 E-value: 3.73e-65

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGS-IRLHGKELLGLSDHA 82
Cdd:PRK15093    3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADrMRFDDIDLLRLSPRE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAI---EIHSREISRADAR-RRAVELLELVGIAQPERRARAFPHELSGG 158
Cdd:PRK15093   83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIpgwTYKGRWWQRFGWRkRRAIELLHRVGIKDHKDAMRSFPYELTEG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAA 238
Cdd:PRK15093  163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 239 VDELYRDRRMPYTVGLLGSVPRLDAA--QGTRLIPIPGAPPTMTSLsPGACTFAPRCPLAIDECLSAEPdlVRVADGHWA 316
Cdd:PRK15093  243 SKELVTTPHHPYTQALIRAIPDFGSAmpHKSRLNTLPGAIPLLEHL-PIGCRLGPRCPYAQRECIETPR--LTGAKNHLY 319


                  ..
gi 1424538268 317 AC 318
Cdd:PRK15093  320 AC 321

MlaF

COG1127

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ...

381-603

2.94e-62

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 205.98 E-value: 2.94e-62

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDPvASLDpRLPV 460
Cdd:COG1127    22 DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELRRRIGMLFQGG-ALFD-SLTV 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRAN-GFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:COG1127   100 FENVAFPLREHtDLSEAEIRELVLEKLELVGLPGA-ADKMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSA 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 540 GIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPqHEYTRRLL 603
Cdd:COG1127   179 VIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLASD-DPWVRQFL 241

nikE

PRK10419

nickel ABC transporter ATP-binding protein NikE;

353-606

5.45e-62

nickel ABC transporter ATP-binding protein NikE;

Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 206.46 E-value: 5.45e-62

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRltkGVVVRRRVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:PRK10419    4 LNVSGLSHHYA---HGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLRTELQVVFQDPVASLDPRLPVYDVIAEPLR-ANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRI 511
Cdd:PRK10419   81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRhLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 512 GIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEqgesDQVF 591
Cdd:PRK10419  161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE----TQPV 236

                         250
                  ....*....|....*...
gi 1424538268 592 TNPQ---HEYTRRLLAAV 606
Cdd:PRK10419  237 GDKLtfsSPAGRVLQNAV 254

metN

PRK11153

DL-methionine transporter ATP-binding subunit; Provisional

354-606

8.61e-62

DL-methionine transporter ATP-binding subunit; Provisional

Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 208.50 E-value: 8.61e-62

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 354 RVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDA 433
Cdd:PRK11153    3 ELKNISKVFPQGGRTIHAL--------NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSE 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 434 AARRRLRTELQVVFQDpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGL-DHSDasRYPAEFSGGQKQRIG 512
Cdd:PRK11153   75 KELRKARRQIGMIFQH--FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLsDKAD--RYPAQLSGGQKQRVA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 513 IARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:PRK11153  151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230

                         250
                  ....*....|....
gi 1424538268 593 NPQHEYTRRLLAAV 606
Cdd:PRK11153  231 HPKHPLTREFIQST 244

ABC_MJ0796_LolCDE_FtsE

cd03255

ATP-binding cassette domain of the transporters involved in export of lipoprotein and ...

5-232

1.68e-59

ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 198.10 E-value: 1.68e-59

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLL--PeyarVSGSIRLHGKELLGLSDHA 82
Cdd:cd03255     1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTL-LNILGGLdrP----TSGEVRVDGTDISKLSEKE 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSQIRGRMIGTVFQDPmsALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQR 162
Cdd:cd03255    76 LAAFRRRHIGFVFQSF--NLLPDLTALENVELPLLL--AGVPKKERRERAEELLERVGLGD---RLNHYPSELSGGQQQR 148

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVsEFADRALVMYAGR 232
Cdd:cd03255   149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGK 217

ABC_Org_Solvent_Resistant

cd03261

ATP-binding cassette transport system involved in resistance to organic solvents; ABC ...

381-595

5.21e-59

ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 197.34 E-value: 5.21e-59

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDpvASLDPRLPV 460
Cdd:cd03261    17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS--GALFDSLTV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANG-FHRHECEERVAELLAVVGLDHsDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDvSIQA 539
Cdd:cd03261    95 FENVAFPLREHTrLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD-PIAS 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 540 G-IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVF--TNPQ 595
Cdd:cd03261   173 GvIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRasDDPL 231

AbcC

COG1135

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];

5-268

4.08e-57

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 195.68 E-value: 4.08e-57

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaaLA-VIGLLPEYArvSGSIRLHGKELLGLSDHAM 83
Cdd:COG1135     2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKST--LIrCINLLERPT--SGSVLVDGVDLTALSEREL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRgRMIGTVFQDP--MSALTpVYtigDQIAEAIEIHsrEISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQ 161
Cdd:COG1135    78 RAAR-RKIGMIFQHFnlLSSRT-VA---ENVALPLEIA--GVPKAEIRKRVAELLELVGL---SDKADAYPSQLSGGQKQ 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDE 241
Cdd:COG1135   148 RVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLD 227

                         250       260
                  ....*....|....*....|....*..
gi 1424538268 242 LYRDRRMPYTVGLLGSVPRLDAAQGTR 268
Cdd:COG1135   228 VFANPQSELTRRFLPTVLNDELPEELL 254

GlnQ

COG1126

ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ...

381-606

5.00e-57

ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 192.13 E-value: 5.00e-57

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKST---TLNQileLTKPEAGSIEILGTDVAvLDAAARRRLRTELQVVFQDpvASLDPR 457
Cdd:COG1126    18 KGISLDVEKGEVVVIIGPSGSGKSTllrCINL---LEEPDSGTITVDGEDLT-DSKKDINKLRRKVGMVFQQ--FNLFPH 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 LPVYDVIAE-PLRANGFHRHECEERVAELLAVVGL-DHSDAsrYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV 535
Cdd:COG1126    92 LTVLENVTLaPIKVKKMSKAEAEERAMELLERVGLaDKADA--YPAQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDP 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 536 SIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAV 606
Cdd:COG1126   170 ELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHERTRAFLSKV 239

ABC_MJ0796_LolCDE_FtsE

cd03255

ATP-binding cassette domain of the transporters involved in export of lipoprotein and ...

353-581

1.68e-56

Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 190.01 E-value: 1.68e-56

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKgvvvrrrvGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03255     1 IELKNLSKTYGGGG--------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLR-TELQVVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRI 511
Cdd:cd03255    73 EKELAAFRrRHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-LNHYPSELSGGQQQRV 149

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 512 GIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHlAHRVAVMYRGMI 581
Cdd:cd03255   150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIELRDGKI 218

PRK15112

peptide ABC transporter ATP-binding protein SapF;

352-605

3.31e-55

peptide ABC transporter ATP-binding protein SapF;

Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 188.46 E-value: 3.31e-55

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKGVVVRRRVGEVRAvdgISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL 431
Cdd:PRK15112    4 LLEVRNLSKTFRYRTGWFRRQTVEAVKP---LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAAR-RRLRtelqVVFQDPVASLDPRLPVYDVIAEPLRAN-GFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQ 509
Cdd:PRK15112   81 DYSYRsQRIR----MIFQDPSTSLNPRQRISQILDFPLRLNtDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQ 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 510 RIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQ 589
Cdd:PRK15112  157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236

                         250
                  ....*....|....*.
gi 1424538268 590 VFTNPQHEYTRRLLAA 605
Cdd:PRK15112  237 VLASPLHELTKRLIAG 252

dppD

PRK11022

dipeptide transporter ATP-binding subunit; Provisional

381-614

3.46e-55

dipeptide transporter ATP-binding subunit; Provisional

Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 190.34 E-value: 3.46e-55

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELT----KPEAGSIEILGTDVAVLDAAARRRL-RTELQVVFQDPVASLD 455
Cdd:PRK11022   24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIdypgRVMAEKLEFNGQDLQRISEKERRNLvGAEVAMIFQDPMTSLN 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 PRLPVYDVIAEPLRAN-GFHRHECEERVAELLAVVGLDhSDASR---YPAEFSGGQKQRIGIARALALQPKILALDEPVS 531
Cdd:PRK11022  104 PCYTVGFQIMEAIKVHqGGNKKTRRQRAIDLLNQVGIP-DPASRldvYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 532 ALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPRAHS 611
Cdd:PRK11022  183 ALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRALPEFAQ 262


                  ...
gi 1424538268 612 DVA 614
Cdd:PRK11022  263 DKA 265

oppD

PRK09473

oligopeptide transporter ATP-binding component; Provisional

341-608

3.86e-55

oligopeptide transporter ATP-binding component; Provisional

Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 190.32 E-value: 3.86e-55

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 341 PNNAAGGQPPVVLRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPE--- 417
Cdd:PRK09473    1 TVPLAQQQADALLDVKDLRVTFSTPDGDVTAV--------NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANgri 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 418 AGSIEILGTDVAVLDAAARRRLRTE-LQVVFQDPVASLDPRLPVYDVIAEPLRAN-GFHRHEC-EERVAELLAV-VGLDH 493
Cdd:PRK09473   73 GGSATFNGREILNLPEKELNKLRAEqISMIFQDPMTSLNPYMRVGEQLMEVLMLHkGMSKAEAfEESVRMLDAVkMPEAR 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 494 SDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRV 573
Cdd:PRK09473  153 KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1424538268 574 AVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPR 608
Cdd:PRK09473  233 LVMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVPR 267

phnK

PRK11701

phosphonate C-P lyase system protein PhnK; Provisional

353-606

4.25e-55

phosphonate C-P lyase system protein PhnK; Provisional

Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 187.83 E-value: 4.25e-55

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVvvrrrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILG-----TD 427
Cdd:PRK11701    7 LSVRGLTKLYGPRKGC------------RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlRD 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 428 VAVLDAAARRRL-RTELQVVFQDPVASLDPRLPVYDVIAEPLRANGfHRH--ECEERVAELLAVVGLDHSDASRYPAEFS 504
Cdd:PRK11701   75 LYALSEAERRRLlRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG-ARHygDIRATAGDWLERVEIDAARIDDLPTTFS 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 505 GGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQ 584
Cdd:PRK11701  154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233

                         250       260
                  ....*....|....*....|..
gi 1424538268 585 GESDQVFTNPQHEYTRRLLAAV 606
Cdd:PRK11701  234 GLTDQVLDDPQHPYTQLLVSSV 255

LolD

COG1136

ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];

350-584

4.90e-55

ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 186.40 E-value: 4.90e-55

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 350 PVVLRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVA 429
Cdd:COG1136     2 SPLLELRNLTKSYGTGEGEVTAL--------RGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDIS 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 430 VLDAAARRRLR-TELQVVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQK 508
Cdd:COG1136    74 SLSERELARLRrRHIGFVFQFF--NLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDR-LDHRPSQLSGGQQ 150

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 509 QRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQ 584
Cdd:COG1136   151 QRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAAR-ADRVIRLRDGRIVSD 225

PotA

COG3842

ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ...

349-598

2.38e-54

ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 188.77 E-value: 2.38e-54

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 349 PPVVLRVSDLTKTYrltkgvvvrrrvGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDV 428
Cdd:COG3842     2 AMPALELENVSKRY------------GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDV 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 429 AVLdAAARRRLRTelqvVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQK 508
Cdd:COG3842    70 TGL-PPEKRNVGM----VFQDY--ALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGL-ADRYPHQLSGGQQ 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 509 QRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHD----LSvvkhLAHRVAVMYRGMIVEQ 584
Cdd:COG3842   142 QRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDqeeaLA----LADRIAVMNDGRIEQV 217

                         250
                  ....*....|....
gi 1424538268 585 GESDQVFTNPQHEY 598
Cdd:COG3842   218 GTPEEIYERPATRF 231

ABC_MetN_methionine_transporter

cd03258

ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ...

4-243

3.58e-54

Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 184.32 E-value: 3.58e-54

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGLSDHAM 83
Cdd:cd03258     1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTL-IRCINGLERPT--SGSVLVDGTDLTLLSGKEL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRgRMIGTVFQ--DPMSALTpVYtigDQIAEAIEIHSreISRADARRRAVELLELVGIAQperRARAFPHELSGGERQ 161
Cdd:cd03258    78 RKAR-RRIGMIFQhfNLLSSRT-VF---ENVALPLEIAG--VPKAEIEERVLELLELVGLED---KADAYPAQLSGGQKQ 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDE 241
Cdd:cd03258   148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227


                  ..
gi 1424538268 242 LY 243
Cdd:cd03258   228 VF 229

ABC_Carb_Solutes_like

cd03259

ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ...

353-585

1.18e-53

ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 182.33 E-value: 1.18e-53

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRltkgvvvrrrvgEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLd 432
Cdd:cd03259     1 LELKGLSKTYG------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV- 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLRtelqVVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHsDASRYPAEFSGGQKQRIG 512
Cdd:cd03259    68 PPERRNIG----MVFQDY--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVA 140

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 513 IARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03259   141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213

CcmA

COG1131

ABC-type multidrug transport system, ATPase component [Defense mechanisms];

353-590

5.70e-53

ABC-type multidrug transport system, ATPase component [Defense mechanisms];

Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 181.03 E-value: 5.70e-53

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRltkgvvvrrrvgEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:COG1131     1 IEVRGLTKRYG------------DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDP 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRlrteLQVVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHsDASRYPAEFSGGQKQRIG 512
Cdd:COG1131    69 AEVRRR----IGYVPQEP--ALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTD-AADRKVGTLSGGMKQRLG 141

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 513 IARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:COG1131   142 LALALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218

ABC_Pro_Gly_Betaine

cd03294

ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ...

383-609

8.18e-53

ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 182.07 E-value: 8.18e-53

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLR-TELQVVFQDpvASLDPRLPVY 461
Cdd:cd03294    43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRrKKISMVFQS--FALLPHRTVL 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAEPLRANGFHRHECEERVAELLAVVGLdHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGI 541
Cdd:cd03294   121 ENVAFGLEVQGVPRAEREERAAEALELVGL-EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 542 VNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPRA 609
Cdd:cd03294   200 QDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGVDRA 267

ABC_cobalt_CbiO_domain1

cd03225

First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ...

11-232

1.84e-52

First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 178.81 E-value: 1.84e-52

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAmsqiRGRM 90
Cdd:cd03225     4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE----LRRK 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDPMSAL-TPvyTIGDQIAEAIEihSREISRADARRRAVELLELVGIAqpERRARaFPHELSGGERQRVVIAIAI 169
Cdd:cd03225    77 VGLVFQNPDDQFfGP--TVEEEVAFGLE--NLGLPEEEIEERVEEALELVGLE--GLRDR-SPFTLSGGQKQRVAIAGVL 149

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 170 ANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03225   150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHDLDLLLELADRVIVLEDGK 211

EcfA2

COG1122

Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ...

5-247

1.77e-51

Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];

Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 177.14 E-value: 1.77e-51

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEdieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELlglSDHAMS 84
Cdd:COG1122     1 IELENLSFSYPGG---TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPT---SGEVLVDGKDI---TKKNLR 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRgRMIGTVFQDPMSAL-TPvyTIGDQIAEAIEihSREISRADARRRAVELLELVGIAQPERRArafPHELSGGERQRV 163
Cdd:COG1122    72 ELR-RKVGLVFQNPDDQLfAP--TVEEDVAFGPE--NLGLPREEIRERVEEALELVGLEHLADRP---PHELSGGQKQRV 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELY 243
Cdd:COG1122   144 AIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNK-EGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVF 222


                  ....
gi 1424538268 244 RDRR 247
Cdd:COG1122   223 SDYE 226

TauB

COG1116

ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ...

348-576

1.18e-50

ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 175.66 E-value: 1.18e-50

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 348 QPPVVLRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTD 427
Cdd:COG1116     3 AAAPALELRGVSKRFPTGGGGVTAL--------DDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 428 VAvlDAAARRRlrtelqVVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQ 507
Cdd:COG1116    75 VT--GPGPDRG------VVFQEP--ALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGF-EDAYPHQLSGGM 143

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 508 KQRIGIARALALQPKILALDEPVSALDV----SIQagivNLLLDLQRRFGLSYLFVSHDLS--VVkhLAHRVAVM 576
Cdd:COG1116   144 RQRVAIARALANDPEVLLMDEPFGALDAltreRLQ----DELLRLWQETGKTVLFVTHDVDeaVF--LADRVVVL 212

ABC_NrtD_SsuB_transporters

cd03293

ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ...

353-576

1.34e-50

ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 174.20 E-value: 1.34e-50

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavld 432
Cdd:cd03293     1 LEVRNVSKTYGGGGGAVTAL--------EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV---- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 aaarRRLRTELQVVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIG 512
Cdd:cd03293    69 ----TGPGPDRGYVFQQD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-ENAYPHQLSGGMRQRVA 141

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 513 IARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVM 576
Cdd:cd03293   142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205

nikD

PRK10418

nickel transporter ATP-binding protein NikD; Provisional

21-255

1.83e-50

nickel transporter ATP-binding protein NikD; Provisional

Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 175.27 E-value: 1.83e-50

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPE-YARVSGSIRLHGKELlglsdhAMSQIRGRMIGTVFQDPM 99
Cdd:PRK10418   16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgVRQTAGRVLLDGKPV------APCALRGRKIATIMQNPR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 100 SALTPVYTIGDqiaeaieiHSREISRA----DARRRAVELLELVGIAQPERRARAFPHELSGGERQRVVIAIAIANDPDL 175
Cdd:PRK10418   90 SAFNPLHTMHT--------HARETCLAlgkpADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 176 LICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLL 255
Cdd:PRK10418  162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLV 241

MlaF

COG1127

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ...

1-242

1.64e-49

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 172.09 E-value: 1.64e-49

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELLGLS 79
Cdd:COG1127     2 SEPMIEVRNLTKSFGDRVV----LDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLrPD----SGEILVDGQDITGLS 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 DHAMSQIRGRMiGTVFQDpmSALTPVYTIGDQIAEAIEIHSReISRADARRRAVELLELVGIAQPERRaraFPHELSGGE 159
Cdd:COG1127    74 EKELYELRRRI-GMLFQG--GALFDSLTVFENVAFPLREHTD-LSEAEIRELVLEKLELVGLPGAADK---MPSELSGGM 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALD-VTVqAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAA 238
Cdd:COG1127   147 RKRVALARALALDPEILLYDEPTAGLDpITS-AVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGT 225


                  ....
gi 1424538268 239 VDEL 242
Cdd:COG1127   226 PEEL 229

TauB

COG1116

ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ...

1-239

2.15e-49

ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 172.58 E-value: 2.15e-49

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLsd 80
Cdd:COG1116     4 AAPALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPT---SGEVLVDGKPVTGP-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 hamsqirGRMIGTVFQDPmsALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQperRARAFPHELSGGER 160
Cdd:COG1116    79 -------GPDRGVVFQEP--ALLPWLTVLDNVALGLEL--RGVPKAERRERARELLELVGLAG---FEDAYPHQLSGGMR 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDV----TVQAQILDVLRTardvTGAAVLIITHDlgvVSE---FADRALVMyAGRP 233
Cdd:COG1116   145 QRVAIARALANDPEVLLMDEPFGALDAltreRLQDELLRLWQE----TGKTVLFVTHD---VDEavfLADRVVVL-SARP 216


                  ....*.
gi 1424538268 234 VEIAAV 239
Cdd:COG1116   217 GRIVEE 222

ABC_OpuCA_Osmoprotection

cd03295

ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ...

353-605

3.51e-49

ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 171.33 E-value: 3.51e-49

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRltkgvvvrrrvGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03295     1 IEFENVTKRYG-----------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAarrRLRTELQVVFQDpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLD-HSDASRYPAEFSGGQKQRI 511
Cdd:cd03295    70 PV---ELRRKIGYVIQQ--IGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDpAEFADRYPHELSGGQQQRV 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 512 GIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVF 591
Cdd:cd03295   145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224

                         250
                  ....*....|....
gi 1424538268 592 TNPQHEYTRRLLAA 605
Cdd:cd03295   225 RSPANDFVAEFVGA 238

CysA

COG1118

ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ...

353-616

8.35e-49

ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 173.79 E-value: 8.35e-49

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVlD 432
Cdd:COG1118     3 IEVRNISKRFGSFT------------LLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFT-N 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRlrtelQV--VFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQR 510
Cdd:COG1118    70 LPPRER-----RVgfVFQHY--ALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGL-ADRYPSQLSGGQRQR 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 511 IGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:COG1118   142 VALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEV 221

                         250       260
                  ....*....|....*....|....*.
gi 1424538268 591 FTNPQHEYTRRLLAAVPRAHSDVASG 616
Cdd:COG1118   222 YDRPATPFVARFLGCVNVLRGRVIGG 247

EcfA2

COG1122

Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ...

381-595

1.34e-48

Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];

Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 169.05 E-value: 1.34e-48

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavlDAAARRRLRTELQVVFQDP----VASLdp 456
Cdd:COG1122    18 DDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDI---TKKNLRELRRKVGLVFQNPddqlFAPT-- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 rlpVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:COG1122    93 ---VEEDVAFGPENLGLPREEIRERVEEALELVGLEHL-ADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPR 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 537 IQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:COG1122   169 GRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYE 226

ABC_PotA_N

cd03300

ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ...

381-595

2.79e-48

ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 168.57 E-value: 2.79e-48

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRrlrteLQVVFQDpvASLDPRLPV 460
Cdd:cd03300    17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP-----VNTVFQN--YALFPHLTV 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03300    90 FENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:cd03300   169 MQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223

CP_lyasePhnK

TIGR02323

phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ...

350-606

6.36e-48

phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]

Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 168.47 E-value: 6.36e-48

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 350 PVVLRVSDLTKTYRLTKGVVVrrrvgevravdgISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVA 429
Cdd:TIGR02323   1 KPLLQVSGLSKSYGGGKGCRD------------VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGA 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 430 VLD-----AAARRRL-RTELQVVFQDPVASLDPRLPVYDVIAEPLRANGfHRHECEERVA--ELLAVVGLDHSDASRYPA 501
Cdd:TIGR02323  69 ELElyqlsEAERRRLmRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-ARHYGNIRATaqDWLEEVEIDPTRIDDLPR 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 502 EFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227

                         250       260
                  ....*....|....*....|....*
gi 1424538268 582 VEQGESDQVFTNPQHEYTRRLLAAV 606
Cdd:TIGR02323 228 VESGLTDQVLDDPQHPYTQLLVSSI 252

ABC_NrtD_SsuB_transporters

cd03293

ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ...

5-239

8.43e-48

Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 166.88 E-value: 8.43e-48

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGlsdhams 84
Cdd:cd03293     1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG------- 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qiRGRMIGTVFQDPmsALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQRVV 164
Cdd:cd03293    71 --PGPDRGYVFQQD--ALLPWLTVLDNVALGLEL--QGVPKAEARERAEELLELVGL---SGFENAYPHQLSGGMRQRVA 141

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDV----TVQAQILDVLRTardvTGAAVLIITHDLGVVSEFADRALVMyAGRPVEIAAV 239
Cdd:cd03293   142 LARALAVDPDVLLLDEPFSALDAltreQLQEELLDIWRE----TGKTVLLVTHDIDEAVFLADRVVVL-SARPGRIVAE 215

FtsE

COG2884

Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];

381-586

9.18e-48

Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 166.77 E-value: 9.18e-48

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDpvASLDPRLPV 460
Cdd:COG2884    19 SDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYLRRRIGVVFQD--FRLLPDRTV 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:COG2884    97 YENVALPLRVTGKSRKEIRRRVREVLDLVGLSDK-AKALPHELSGGEQQRVAIARALVNRPELLLADEPTGNLDPETSWE 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1424538268 541 IVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGE 586
Cdd:COG2884   176 IMELLEEINRR-GTTVLIATHDLELVDRMPKRVLELEDGRLVRDEA 220

PRK15134

microcin C ABC transporter ATP-binding protein YejF; Provisional

381-608

1.46e-47

microcin C ABC transporter ATP-binding protein YejF; Provisional

Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 174.89 E-value: 1.46e-47

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILEL--TKP---EAGSIEILGTDVAVLDAAARRRLR-TELQVVFQDPVASL 454
Cdd:PRK15134   26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLlpSPPvvyPSGDIRFHGESLLHASEQTLRGVRgNKIAMIFQEPMVSL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 455 DPRLPVYDVIAEPLRAN-GFHRHECEERVAELLAVVGLDHSdASR---YPAEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:PRK15134  106 NPLHTLEKQLYEVLSLHrGMRREAARGEILNCLDRVGIRQA-AKRltdYPHQLSGGERQRVMIAMALLTRPELLIADEPT 184

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPR 608
Cdd:PRK15134  185 TALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLLNSEPS 262

ABC_ModC_like

cd03299

ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ...

381-605

1.22e-46

ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 164.05 E-value: 1.22e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRrlrteLQVVFQDpvASLDPRLPV 460
Cdd:cd03299    16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRD-----ISYVPQN--YALFPHMTV 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03299    89 YKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL-LNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAA 605
Cdd:cd03299   168 LREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLGF 232

PRK10261

glutathione transporter ATP-binding protein; Provisional

20-265

2.57e-46

glutathione transporter ATP-binding protein; Provisional

Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 173.12 E-value: 2.57e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGLSDHAMSQIRgRMIGTVFQDPM 99
Cdd:PRK10261  336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRIDTLSPGKLQALR-RDIQFIFQDPY 411

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 100 SALTPVYTIGDQIAEAIEIHSREISRAdARRRAVELLELVGIaQPERRARaFPHELSGGERQRVVIAIAIANDPDLLICD 179
Cdd:PRK10261  412 ASLDPRQTVGDSIMEPLRVHGLLPGKA-AAARVAWLLERVGL-LPEHAWR-YPHEFSGGQRQRICIARALALNPKVIIAD 488

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 180 EPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLGSVP 259
Cdd:PRK10261  489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVP 568


                  ....*.
gi 1424538268 260 RLDAAQ 265
Cdd:PRK10261  569 VADPSR 574

SapD

COG4170

ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];

381-607

3.88e-46

ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];

Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 165.85 E-value: 3.88e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPE----AGSIEILGTDVAVLDAAARRRL-RTELQVVFQDPVASLD 455
Cdd:COG4170    24 DRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtADRFRWNGIDLLKLSPRERRKIiGREIAMIFQEPSSCLD 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 PRLPVYDVIAEPLRANGF---------HRHEceeRVAELLAVVGL-DHSDASR-YPAEFSGGQKQRIGIARALALQPKIL 524
Cdd:COG4170   104 PSAKIGDQLIEAIPSWTFkgkwwqrfkWRKK---RAIELLHRVGIkDHKDIMNsYPHELTEGECQKVMIAMAIANQPRLL 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 525 ALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLA 604
Cdd:COG4170   181 IADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKSPHHPYTKALLR 260


                  ...
gi 1424538268 605 AVP 607
Cdd:COG4170   261 SMP 263

ECF_ATPase_2

TIGR04521

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ...

381-595

4.07e-46

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]

Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 164.16 E-value: 4.07e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDPVASLDPRLpV 460
Cdd:TIGR04521  22 DDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDLRKKVGLVFQFPEHQLFEET-V 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:TIGR04521 101 YKDIAFGPKNLGLSEEEAEERVKEALELVGLDEEYLERSPFELSGGQMRRVAIAGVLAMEPEVLILDEPTAGLDPKGRKE 180

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:TIGR04521 181 ILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVD 235

FtsE

COG2884

Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];

21-235

4.65e-46

Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 162.14 E-value: 4.65e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLpeYARV---SGSIRLHGKELLGLSDHAMSQIRgRMIGTVFQD 97
Cdd:COG2884    15 REALSDVSLEIEKGEFVFLTGPSGAGKST----LLKLL--YGEErptSGQVLVNGQDLSRLKRREIPYLR-RRIGVVFQD 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  98 pmSALTPVYTIGDQIAEAIEIHsrEISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLI 177
Cdd:COG2884    88 --FRLLPDRTVYENVALPLRVT--GKSRKEIRRRVREVLDLVGLSD---KAKALPHELSGGEQQRVAIARALVNRPELLL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 178 CDEPTTALDVTVQAQILDVLRTARDVtGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:COG2884   161 ADEPTGNLDPETSWEIMELLEEINRR-GTTVLIATHDLELVDRMPKRVLELEDGRLVR 217

PotA

COG3842

ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ...

1-244

8.43e-46

ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 165.66 E-value: 8.43e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELLGLS 79
Cdd:COG3842     2 AMPALELENVSKRYG----DVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFEtPD----SGRILLDGRDVTGLP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 DHAmsqirgRMIGTVFQDPmsALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQperRARAFPHELSGGE 159
Cdd:COG3842    74 PEK------RNVGMVFQDY--ALFPHLTVAENVAFGLRM--RGVPKAEIRARVAELLELVGLEG---LADRYPHQLSGGQ 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALD----VTVQAQILDVLRTardvTGAAVLIITHDLgvvSE---FADRALVMYAGR 232
Cdd:COG3842   141 QQRVALARALAPEPRVLLLDEPLSALDaklrEEMREELRRLQRE----LGITFIYVTHDQ---EEalaLADRIAVMNDGR 213

                         250
                  ....*....|..
gi 1424538268 233 PVEIAAVDELYR 244
Cdd:COG3842   214 IEQVGTPEEIYE 225

GlnQ

COG1126

ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ...

4-242

9.18e-46

ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 161.70 E-value: 9.18e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELlGLSDHAM 83
Cdd:COG1126     1 MIEIENLHKSFG----DLEVLKGISLDVEKGEVVVIIGPSGSGKSTL-LRCINLLEEPD--SGTITVDGEDL-TDSKKDI 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRmIGTVFQDPmsALTPVYTIGDQIAEAIeIHSREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRV 163
Cdd:COG1126    73 NKLRRK-VGMVFQQF--NLFPHLTVLENVTLAP-IKVKKMSKAEAEERAMELLERVGLAD---KADAYPAQLSGGQQQRV 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT-ARDvtGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:COG1126   146 AIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDlAKE--GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEF 223

MglA

COG1129

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];

1-582

9.85e-46

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];

Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 169.04 E-value: 9.85e-46

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTT--AALAviGLlpeYARVSGSIRLHGKELLGL 78
Cdd:COG1129     1 AEPLLEMRGISKSFGG----VKALDGVSLELRPGEVHALLGENGAGKSTlmKILS--GV---YQPDSGEILLDGEPVRFR 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  79 SDHAmSQIRGrmIGTVFQDPmsALTPVYTIGDQIAEAIEIHSRE-ISRADARRRAVELLELVGIA-QPERRARafphELS 156
Cdd:COG1129    72 SPRD-AQAAG--IAIIHQEL--NLVPNLSVAENIFLGREPRRGGlIDWRAMRRRARELLARLGLDiDPDTPVG----DLS 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEI 236
Cdd:COG1129   143 VAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKA-QGVAIIYISHRLDEVFEIADRVTVLRDGRLVGT 221

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 237 AAVDELYRDrrmpytvgllgsvprldaaqgtrlipipgapptmtslspgactfaprcplaideclsaepDLVRvadghwa 316
Cdd:COG1129   222 GPVAELTED------------------------------------------------------------ELVR------- 234

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 317 acirtdDVAGRSAADVFgvstqPPPNNAAGgqpPVVLRVSDLTKTYRLtkgvvvrrrvgevravDGISFTLEQGRTLGIV 396
Cdd:COG1129   235 ------LMVGRELEDLF-----PKRAAAPG---EVVLEVEGLSVGGVV----------------RDVSFSVRAGEILGIA 284

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 397 GESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLR----TE---LQVVFQDpvasldprLPVYDVIA---- 465
Cdd:COG1129   285 GLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGiayvPEdrkGEGLVLD--------LSIRENITlasl 356

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 466 EPLRANGF-HRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNL 544
Cdd:COG1129   357 DRLSRGGLlDRRRERALAEEYIKRLRIKTPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRL 436

                         570       580       590
                  ....*....|....*....|....*....|....*...
gi 1424538268 545 LLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIV 582
Cdd:COG1129   437 IRELAAE-GKAVIVISSELPELLGLSDRILVMREGRIV 473

NatA

COG4555

ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ...

352-590

1.10e-45

ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];

Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 161.95 E-value: 1.10e-45

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKGVvvrrrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL 431
Cdd:COG4555     1 MIEVENLSKKYGKVPAL------------KDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKE 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAARRRLrtelQVVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRI 511
Cdd:COG4555    69 PREARRQI----GVLPDER--GLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLE-EFLDRRVGELSTGMKKKV 141

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 512 GIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLqRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:COG4555   142 ALARALVHDPKVLLLDEPTNGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219

OpuBA

COG1125

ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ...

381-603

1.62e-45

ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 163.34 E-value: 1.62e-45

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtelQV--VFQDpvASLDPRL 458
Cdd:COG1125    19 DDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDPVELRR-----RIgyVIQQ--IGLFPHM 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 PVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSD-ASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSI 537
Cdd:COG1125    92 TVAENIATVPRLLGWDKERIRARVDELLELVGLDPEEyRDRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 538 QAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLL 603
Cdd:COG1125   172 REQLQDELLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREGRIVQYDTPEEILANPANDFVADFV 237

ABC_Org_Solvent_Resistant

cd03261

ATP-binding cassette transport system involved in resistance to organic solvents; ABC ...

5-242

3.30e-44

Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 157.66 E-value: 3.30e-44

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSDHAMS 84
Cdd:cd03261     1 IELRGLTKSFGGRTV----LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRGRMiGTVFQDpmSALTPVYTIGDQIAEAIEIHSREiSRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVV 164
Cdd:cd03261    74 RLRRRM-GMLFQS--GALFDSLTVFENVAFPLREHTRL-SEEEIREIVLEKLEAVGLRG---AEDLYPAELSGGMKKRVA 146

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:cd03261   147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224

FepC

COG1120

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ...

381-592

3.62e-44

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];

Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 157.90 E-value: 3.62e-44

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTelqVVFQDPVASLDprLPV 460
Cdd:COG1120    18 DDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIA---YVPQEPPAPFG--LTV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIA---EP-LRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:COG1120    93 RELVAlgrYPhLGLFGRPSAEDREAVEEALERTGLEHL-ADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLA 171

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:COG1120   172 HQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLT 227

ABC_Class3

cd03229

ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ...

353-579

4.38e-44

ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 155.42 E-value: 4.38e-44

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYrltkgvvvrrrvGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03229     1 LELKNVSKRY------------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAaRRRLRTELQVVFQDPvaSLDPRLPVYDVIAEPLrangfhrheceervaellavvgldhsdasrypaefSGGQKQRIG 512
Cdd:cd03229    69 DE-LPPLRRRIGMVFQDF--ALFPHLTVLENIALGL-----------------------------------SGGQQQRVA 110

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 513 IARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRG 579
Cdd:cd03229   111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177

CysA

COG1118

ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ...

5-263

4.43e-44

ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 160.70 E-value: 4.43e-44

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEdievPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVI-GLlpEYARvSGSIRLHGKELLglSDHAm 83
Cdd:COG1118     3 IEVRNISKRFGSF----TLLDDVSLEIASGELVALLGPSGSGKTTL-LRIIaGL--ETPD-SGRIVLNGRDLF--TNLP- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 sqIRGRMIGTVFQDPmsALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRV 163
Cdd:COG1118    72 --PRERRVGFVFQHY--ALFPHMTVAENIAFGLRV--RPPSKAEIRARVEELLELVQLEGLADR---YPSQLSGGQRQRV 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELY 243
Cdd:COG1118   143 ALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVY 222

                         250       260
                  ....*....|....*....|
gi 1424538268 244 RDRRMPYTVGLLGSVPRLDA 263
Cdd:COG1118   223 DRPATPFVARFLGCVNVLRG 242

ABC_cobalt_CbiO_domain1

cd03225

First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ...

381-579

8.34e-44

Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 155.70 E-value: 8.34e-44

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtELQVVFQDP----VASLdp 456
Cdd:cd03225    18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR---KVGLVFQNPddqfFGPT-- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 rlpVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHsDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:cd03225    93 ---VEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1424538268 537 IQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRG 579
Cdd:cd03225   169 GRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210

ABC_HisP_GlnQ

cd03262

ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ...

381-581

1.76e-43

ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.

Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 154.99 E-value: 1.76e-43

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvLDAAARRRLRTELQVVFQDpvASLDPRLPV 460
Cdd:cd03262    17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT-DDKKNINELRQKVGMVFQQ--FNLFPHLTV 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAE-PLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:cd03262    94 LENITLaPIKVKGMSKAEAEERALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1424538268 540 GIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:cd03262   173 EVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213

CcmA

COG1131

ABC-type multidrug transport system, ATPase component [Defense mechanisms];

5-242

1.89e-43

ABC-type multidrug transport system, ATPase component [Defense mechanisms];

Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 155.61 E-value: 1.89e-43

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAMs 84
Cdd:COG1131     1 IEVRGLTKRYG----DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPT---SGEVRVLGEDVARDPAEVR- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qirgRMIGTVFQDPmsALTPVYTIgdqiAEAIEIHSR--EISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQR 162
Cdd:COG1131    73 ----RRIGYVPQEP--ALYPDLTV----RENLRFFARlyGLPRKEARERIDELLELFGL---TDAADRKVGTLSGGMKQR 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:COG1131   140 LGLALALLHDPELLILDEPTSGLDPEARRELWELLRELAA-EGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218

ABC_Mj1267_LivG_branched

cd03219

ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ...

381-595

2.83e-43

ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 154.90 E-value: 2.83e-43

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRL---RTelqvvFQDPvaSLDPR 457
Cdd:cd03219    17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLgigRT-----FQIP--RLFPE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 LPVYD--VIAEPLRANGF--------HRHECEERVAELLAVVGLDHsDASRYPAEFSGGQKQRIGIARALALQPKILALD 527
Cdd:cd03219    90 LTVLEnvMVAAQARTGSGlllararrEEREARERAEELLERVGLAD-LADRPAGELSYGQQRRLEIARALATDPKLLLLD 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 528 EPVSALDVSIQAGIVNLLLDLqRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:cd03219   169 EPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235

ZnuC

COG1121

ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ...

1-252

3.19e-43

ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 155.25 E-value: 3.19e-43

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELlglsd 80
Cdd:COG1121     3 MMPAIELENLTVSYG----GRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLP---PTSGTVRLFGKPP----- 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 hamsQIRGRMIGTVFQDPMSALT-PVyTIGDQIAEAIEIHS---REISRADaRRRAVELLELVGIAqpERRARAFpHELS 156
Cdd:COG1121    71 ----RRARRRIGYVPQRAEVDWDfPI-TVRDVVLMGRYGRRglfRRPSRAD-REAVDEALERVGLE--DLADRPI-GELS 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVM-----YAG 231
Cdd:COG1121   142 GGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRR-EGKTILVVTHDLGAVREYFDRVLLLnrglvAHG 220

                         250       260
                  ....*....|....*....|.
gi 1424538268 232 RPVEIAAVDELYRDRRMPYTV 252
Cdd:COG1121   221 PPEEVLTPENLSRAYGGPVAL 241

PhnC

COG3638

ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ...

352-590

8.04e-43

ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 154.06 E-value: 8.04e-43

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRltkgvvvrrrvGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL 431
Cdd:COG3638     2 MLELRNLSKRYP-----------GGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTAL 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAARRRLRTELQVVFQDPvaSLDPRLPVYD-VIAEPLRANGFHRH-------ECEERVAELLAVVGLDHsDASRYPAEF 503
Cdd:COG3638    71 RGRALRRLRRRIGMIFQQF--NLVPRLSVLTnVLAGRLGRTSTWRSllglfppEDRERALEALERVGLAD-KAYQRADQL 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 504 SGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVE 583
Cdd:COG3638   148 SGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVF 227


                  ....*..
gi 1424538268 584 QGESDQV 590
Cdd:COG3638   228 DGPPAEL 234

MalK

COG3839

ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ...

381-598

8.93e-43

ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];

Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 157.16 E-value: 8.93e-43

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRrlrteLQVVFQDPVasLDPRLPV 460
Cdd:COG3839    20 KDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDRN-----IAMVFQSYA--LYPHMTV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:COG3839    93 YENIAFPLKLRKVPKAEIDRRVREAAELLGLEDL-LDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAKLRVE 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHD----LSvvkhLAHRVAVMYRGMIVEQGESDQVFTNPQHEY 598
Cdd:COG3839   172 MRAEIKRLHRRLGTTTIYVTHDqveaMT----LADRIAVMNDGRIQQVGTPEELYDRPANLF 229

ABC_tran

pfam00005

ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...

381-529

1.09e-42

Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 150.49 E-value: 1.09e-42

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDaaaRRRLRTELQVVFQDPvaSLDPRLPV 460
Cdd:pfam00005   2 KNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDE---RKSLRKEIGYVFQDP--QLFPRLTV 76

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDASR---YPAEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:pfam00005  77 RENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPvgeRPGTLSGGQRQRVAIARALLTKPKLLLLDEP 148

3a0106s01

TIGR00968

sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]

381-608

7.92e-42

sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]

Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 151.11 E-value: 7.92e-42

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAaaRRRlrtELQVVFQDpvASLDPRLPV 460
Cdd:TIGR00968  17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDR---KIGFVFQH--YALFKHLTV 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:TIGR00968  90 RDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKE 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPR 608
Cdd:TIGR00968 169 LRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEVNV 236

ABC_Carb_Solutes_like

cd03259

ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ...

5-237

1.19e-41

Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 149.98 E-value: 1.19e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSdhams 84
Cdd:cd03259     1 LELKGLSKTYG----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVTGVP----- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qIRGRMIGTVFQDPmsALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVV 164
Cdd:cd03259    69 -PERRNIGMVFQDY--ALFPHLTVAENIAFGLKL--RGVPKAEIRARVRELLELVGLEGLLNR---YPHELSGGQQQRVA 140

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIA 237
Cdd:cd03259   141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213

ABC_DR_subfamily_A

cd03230

ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ...

353-581

2.00e-41

ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 147.93 E-value: 2.00e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVvvrrrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03230     1 IEVRNLSKRYGKKTAL------------DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLRtelqVVFQDPvaSLDPRLPVYDVIaeplrangfhrheceervaellavvgldhsdasrypaEFSGGQKQRIG 512
Cdd:cd03230    69 EEVKRRIG----YLPEEP--SLYENLTVRENL-------------------------------------KLSGGMKQRLA 105

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 513 IARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:cd03230   106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173

nikE

PRK10419

nickel ABC transporter ATP-binding protein NikE;

24-242

2.04e-41

nickel ABC transporter ATP-binding protein NikE;

Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 150.99 E-value: 2.04e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELLGLSDHAMSQIRgRMIGTVFQDPMSALT 103
Cdd:PRK10419   28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL---ESPSQGNVSWRGEPLAKLNRAQRKAFR-RDIQMVFQDSISAVN 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 104 PVYTIGDQIAEAIEiHSREISRADARRRAVELLELVGIaqPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTT 183
Cdd:PRK10419  104 PRKTVREIIREPLR-HLLSLDKAERLARASEMLRAVDL--DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 184 ALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:PRK10419  181 NLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239

LivG

COG0411

ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ...

349-595

3.83e-41

ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];

Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 149.80 E-value: 3.83e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 349 PPVVLRVSDLTKTYR-LTkgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTD 427
Cdd:COG0411     1 SDPLLEVRGLTKRFGgLV-------------AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRD 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 428 VAVLDAAARRRL---RTelqvvFQdpVASLDPRLPVYD-------------VIAEPLRANGFHR--HECEERVAELLAVV 489
Cdd:COG0411    68 ITGLPPHRIARLgiaRT-----FQ--NPRLFPELTVLEnvlvaaharlgrgLLAALLRLPRARReeREARERAEELLERV 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 490 GLDHsDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHL 569
Cdd:COG0411   141 GLAD-RADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGL 219

                         250       260
                  ....*....|....*....|....*.
gi 1424538268 570 AHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:COG0411   220 ADRIVVLDFGRVIAEGTPAEVRADPR 245

cbiO

PRK13635

energy-coupling factor ABC transporter ATP-binding protein;

11-282

4.98e-41

energy-coupling factor ABC transporter ATP-binding protein;

Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 150.17 E-value: 4.98e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELlglSDHAMSQIRgR 89
Cdd:PRK13635   10 HISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLlPE----AGTITVGGMVL---SEETVWDVR-R 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDPMSALTPVyTIGDQIAEAIEihSREISRADARRRAVELLELVGIAQPERRArafPHELSGGERQRVVIAIAI 169
Cdd:PRK13635   82 QVGMVFQNPDNQFVGA-TVQDDVAFGLE--NIGVPREEMVERVDQALRQVGMEDFLNRE---PHRLSGGQKQRVAIAGVL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 170 ANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSeFADRALVMYAGRPVEIAAVDELYRDRRMP 249
Cdd:PRK13635  156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIFKSGHML 234

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1424538268 250 YTVGLlgSVP---RLDAAQGTRLIPIPGAPPTMTSL 282
Cdd:PRK13635  235 QEIGL--DVPfsvKLKELLKRNGILLPNTYLTMESL 268

YbbA

COG4181

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ...

2-241

5.54e-41

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 148.74 E-value: 5.54e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   2 TAVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTT--AALAviGL-LPEyarvSGSIRLHGKELLGL 78
Cdd:COG4181     6 APIIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTllGLLA--GLdRPT----SGTVRLAGQDLFAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  79 SDHAMSQIRGRMIGTVFQD----P-MSALtpvytigDQIAEAIEIHSReisrADARRRAVELLELVGIAQperRARAFPH 153
Cdd:COG4181    80 DEDARARLRARHVGFVFQSfqllPtLTAL-------ENVMLPLELAGR----RDARARARALLERVGLGH---RLDHYPA 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 154 ELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEfADRALVMYAGRP 233
Cdd:COG4181   146 QLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRL 224


                  ....*...
gi 1424538268 234 VEIAAVDE 241
Cdd:COG4181   225 VEDTAATA 232

artP

PRK11124

arginine transporter ATP-binding subunit; Provisional

383-597

6.01e-41

arginine transporter ATP-binding subunit; Provisional

Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 149.01 E-value: 6.01e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKST---TLNqILELtkPEAGSIEILGTDV---AVLDAAARRRLRTELQVVFQDpvASLDP 456
Cdd:PRK11124   21 ITLDCPQGETLVLLGPSGAGKSSllrVLN-LLEM--PRSGTLNIAGNHFdfsKTPSDKAIRELRRNVGMVFQQ--YNLWP 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RLPVYD-VIAEPLRANGFHRHECEERVAELLAVVGL-DHSDasRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALD 534
Cdd:PRK11124   96 HLTVQQnLIEAPCRVLGLSKDQALARAEKLLERLRLkPYAD--RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 535 VSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQvFTNPQHE 597
Cdd:PRK11124  174 PEITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-FTQPQTE 234

ABC_HisP_GlnQ

cd03262

ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ...

5-232

6.59e-41

Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 147.68 E-value: 6.59e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEdievPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGlSDHAMS 84
Cdd:cd03262     1 IEIKNLHKSFGDF----HVLKGIDLTVKKGEVVVIIGPSGSGKSTL-LRCINLLEEPD--SGTIIIDGLKLTD-DKKNIN 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRGRmIGTVFQDpmSALTPVYTIGDQIAEAIeIHSREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVV 164
Cdd:cd03262    73 ELRQK-VGMVFQQ--FNLFPHLTVLENITLAP-IKVKGMSKAEAEERALELLEKVGLAD---KADAYPAQLSGGQQQRVA 145

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT-ARDvtGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03262   146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDlAEE--GMTMVVVTHEMGFAREVADRVIFMDDGR 212

ABC_PstB_phosphate_transporter

cd03260

ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ...

381-590

6.80e-41

ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 148.10 E-value: 6.80e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKST---TLNQILELTK--PEAGSIEILGTDVAVLDAAaRRRLRTELQVVFQDPvaslD 455
Cdd:cd03260    17 KDISLDIPKGEITALIGPSGCGKSTllrLLNRLNDLIPgaPDEGEVLLDGKDIYDLDVD-VLELRRRVGMVFQKP----N 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 P-RLPVYDVIAEPLRANGFHRHEC-EERVAELLAVVGLDHSDASRYPA-EFSGGQKQRIGIARALALQPKILALDEPVSA 532
Cdd:cd03260    92 PfPGSIYDNVAYGLRLHGIKLKEElDERVEEALRKAALWDEVKDRLHAlGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 533 LDVSIQAGIVNLLLDLQRRFGLsyLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:cd03260   172 LDPISTAKIEELIAELKKEYTI--VIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227

metN

PRK11153

DL-methionine transporter ATP-binding subunit; Provisional

6-262

7.31e-41

DL-methionine transporter ATP-binding subunit; Provisional

Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 151.88 E-value: 7.31e-41

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   6 EVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGLSDHAMSQ 85
Cdd:PRK11153    3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTL-IRCINLLERPT--SGRVLVDGQDLTALSEKELRK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  86 IRgRMIGTVFQ--DPMSAltpvYTIGDQIAEAIEIHSreISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRV 163
Cdd:PRK11153   80 AR-RQIGMIFQhfNLLSS----RTVFDNVALPLELAG--TPKAEIKARVTELLELVGLSD---KADRYPAQLSGGQKQRV 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELY 243
Cdd:PRK11153  150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229

                         250
                  ....*....|....*....
gi 1424538268 244 RDRRMPYTVGLLGSVPRLD 262
Cdd:PRK11153  230 SHPKHPLTREFIQSTLHLD 248

FepC

COG1120

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ...

4-242

1.10e-40

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];

Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 148.65 E-value: 1.10e-40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAm 83
Cdd:COG1120     1 MLEAENLSVGYGGRPV----LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPS---SGEVLLDGRDLASLSRRE- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 sqiRGRMIGTVFQDPMSA--LTpvytigdqIAEAIEI----HSREISRADA--RRRAVELLELVGIAqpERRARAFpHEL 155
Cdd:COG1120    73 ---LARRIAYVPQEPPAPfgLT--------VRELVALgrypHLGLFGRPSAedREAVEEALERTGLE--HLADRPV-DEL 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 156 SGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:COG1120   139 SGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVA 218


                  ....*..
gi 1424538268 236 IAAVDEL 242
Cdd:COG1120   219 QGPPEEV 225

ZnuC

COG1121

ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ...

381-592

1.34e-40

ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 147.93 E-value: 1.34e-40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvldaAARRRL-----RtelqvvfqdpvASLD 455
Cdd:COG1121    23 EDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPR----RARRRIgyvpqR-----------AEVD 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 PRLP--VYDVIA----EPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:COG1121    88 WDFPitVRDVVLmgryGRRGLFRRPSRADREAVDEALERVGLEDL-ADRPIGELSGGQQQRVLLARALAQDPDLLLLDEP 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 530 VSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGmIVEQGESDQVFT 592
Cdd:COG1121   167 FAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEEVLT 227

NupO

COG3845

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...

1-582

1.74e-40

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];

Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 154.41 E-value: 1.74e-40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTaaLAVI--GLL-PEyarvSGSIRLHGKEL-L 76
Cdd:COG3845     2 MPPALELRGITKRFGG----VVANDDVSLTVRPGEIHALLGENGAGKST--LMKIlyGLYqPD----SGEILIDGKPVrI 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  77 GLSDHAMSqiRGrmIGTVFQDPMsaLTPVYTIGDQIAEAIEIHSRE-ISRADARRRAVELLELVGIA-QPERRArafpHE 154
Cdd:COG3845    72 RSPRDAIA--LG--IGMVHQHFM--LVPNLTVAENIVLGLEPTKGGrLDRKAARARIRELSERYGLDvDPDAKV----ED 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 LSGGERQRVVIAIAIANDPDLLICDEPTTALdvTVQ--AQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:COG3845   142 LSVGEQQRVEILKALYRGARILILDEPTAVL--TPQeaDELFEILRRLAA-EGKSIIFITHKLREVMAIADRVTVLRRGK 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 233 PVEIAAVDElyrdrrmpytvgllgsvprLDAAQGTRLipipgapptMtslspgactfaprcplaideclsaepdlvrvad 312
Cdd:COG3845   219 VVGTVDTAE-------------------TSEEELAEL---------M--------------------------------- 237

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 313 ghwaacirtddvagrsaadvFGVSTQPPPNNAAGGQPPVVLRVSDLTktyrltkgvvvRRRVGEVRAVDGISFTLEQGRT 392
Cdd:COG3845   238 --------------------VGREVLLRVEKAPAEPGEVVLEVENLS-----------VRDDRGVPALKDVSLEVRAGEI 286

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 393 LGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRteLQVVFQDPVAS-LDPRLPVYDVIA------ 465
Cdd:COG3845   287 LGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLG--VAYIPEDRLGRgLVPDMSVAENLIlgryrr 364

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 466 EPLRANGF-HRHECEERVAELLA---VVGLDHSDASRypaEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGI 541
Cdd:COG3845   365 PPFSRGGFlDRKAIRAFAEELIEefdVRTPGPDTPAR---SLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFI 441

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|.
gi 1424538268 542 VNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIV 582
Cdd:COG3845   442 HQRLLELRDA-GAAVLLISEDLDEILALSDRIAVMYEGRIV 481

ABC_MalK_N

cd03301

The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ...

381-585

1.91e-40

The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 146.63 E-value: 1.91e-40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARrrlrtELQVVFQDpvASLDPRLPV 460
Cdd:cd03301    17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR-----DIAMVFQN--YALYPHMTV 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03301    90 YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03301   169 MRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213

ArtP

COG4161

ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];

383-597

4.70e-40

ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 146.31 E-value: 4.70e-40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKST---TLNqILELtkPEAGSIEILGTDV---AVLDAAARRRLRTELQVVFQDpvASLDP 456
Cdd:COG4161    21 INLECPSGETLVLLGPSGAGKSSllrVLN-LLET--PDSGQLNIAGHQFdfsQKPSEKAIRLLRQKVGMVFQQ--YNLWP 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RLPVYD-VIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV 535
Cdd:COG4161    96 HLTVMEnLIEAPCKVLGLSKEQAREKAMKLLARLRLTDK-ADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 536 SIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDqVFTNPQHE 597
Cdd:COG4161   175 EITAQVVEIIRELSQT-GITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDAS-HFTQPQTE 234

LolD_lipo_ex

TIGR02211

lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ...

4-232

4.79e-40

lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]

Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 145.57 E-value: 4.79e-40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLL--PeyarVSGSIRLHGKELLGLSDH 81
Cdd:TIGR02211   1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTL-LHLLGGLdnP----TSGEVLFNGQSLSKLSSN 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  82 AMSQIRGRMIGTVFQdpMSALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQ 161
Cdd:TIGR02211  76 ERAKLRNKKLGFIYQ--FHHLLPDFTALENVAMPLLI--GKKSVKEAKERAYEMLEKVGL---EHRINHRPSELSGGERQ 148

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFaDRALVMYAGR 232
Cdd:TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQ 218

PRK11264

putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

382-603

9.34e-40

putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 146.05 E-value: 9.34e-40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSI-----EILGTDVAVLDAAARRRLRTELQVVFQDpvASLDP 456
Cdd:PRK11264   21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIrvgdiTIDTARSLSQQKGLIRQLRQHVGFVFQN--FNLFP 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 -RLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDASrYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV 535
Cdd:PRK11264   99 hRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS-YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP 177

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 536 SIQAGIVNLLLDL--QRRfglSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLL 603
Cdd:PRK11264  178 ELVGEVLNTIRQLaqEKR---TMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFL 244

PRK10619

histidine ABC transporter ATP-binding protein HisP;

382-604

9.39e-40

histidine ABC transporter ATP-binding protein HisP;

Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 146.27 E-value: 9.39e-40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVA----------VLDAAARRRLRTELQVVFQDpv 451
Cdd:PRK10619   23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlkVADKNQLRLLRTRLTMVFQH-- 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 452 ASLDPRLPVYDVIAE-PLRANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:PRK10619  101 FNLWSHMTVLENVMEaPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT 180

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLA 604
Cdd:PRK10619  181 SALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLK 253

cbiO

PRK13637

energy-coupling factor transporter ATPase;

381-593

1.78e-39

energy-coupling factor transporter ATPase;

Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 146.35 E-value: 1.78e-39

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAAR-RRLRTELQVVFQDPVASLDPRlP 459
Cdd:PRK13637   24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT--DKKVKlSDIRKKVGLVFQYPEYQLFEE-T 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSD-ASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:PRK13637  101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDyKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PRK13637  181 DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235

HisP

COG4598

ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];

348-605

2.00e-39

ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 145.33 E-value: 2.00e-39

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 348 QPPVVLRVSDLTKTYrltkgvvvrrrvGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTD 427
Cdd:COG4598     4 TAPPALEVRDLHKSF------------GDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEE 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 428 VA----------VLDAAARRRLRTELQVVFQDpvASLDPRLPVYD-VIAEPLRANGFHRHECEERVAELLAVVGLDHSdA 496
Cdd:COG4598    72 IRlkpdrdgelvPADRRQLQRIRTRLGMVFQS--FNLWSHMTVLEnVIEAPVHVLGRPKAEAIERAEALLAKVGLADK-R 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 497 SRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVM 576
Cdd:COG4598   149 DAYPAHLSGGQQQRAAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFL 227

                         250       260
                  ....*....|....*....|....*....
gi 1424538268 577 YRGMIVEQGESDQVFTNPQHEYTRRLLAA 605
Cdd:COG4598   228 HQGRIEEQGPPAEVFGNPKSERLRQFLSS 256

nikD

PRK10418

nickel transporter ATP-binding protein NikD; Provisional

381-605

2.48e-39

nickel transporter ATP-binding protein NikD; Provisional

Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 144.84 E-value: 2.48e-39

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKP----EAGSIEILGTDVAvldaAARRRLRTeLQVVFQDPVASLDP 456
Cdd:PRK10418   20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVA----PCALRGRK-IATIMQNPRSAFNP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RLPVYDVIAEPLRANGfhRHECEERVAELLAVVGLDHSD--ASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALD 534
Cdd:PRK10418   95 LHTMHTHARETCLALG--KPADDATLTAALEAVGLENAArvLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 535 VSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAA 605
Cdd:PRK10418  173 VVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSA 243

ABC_CysA_sulfate_importer

cd03296

ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ...

381-598

3.07e-39

ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 144.02 E-value: 3.07e-39

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARrrlrtELQVVFQDpvASLDPRLPV 460
Cdd:cd03296    19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQER-----NVGFVFQH--YALFRHMTV 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRH----ECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:cd03296    92 FDNVAFGLRVKPRSERppeaEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEY 598
Cdd:cd03296   171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232

FtsE

TIGR02673

cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ...

21-232

7.36e-39

cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]

Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 142.39 E-value: 7.36e-39

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGLSDHAMSQIRgRMIGTVFQDpmS 100
Cdd:TIGR02673  15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQLPLLR-RRIGVVFQD--F 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 ALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQRVVIAIAIANDPDLLICDE 180
Cdd:TIGR02673  89 RLLPDRTVYENVALPLEV--RGKKEREIQRRVGAALRQVGL---EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 181 PTTALDVTVQAQILDVLRTARDVtGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:TIGR02673 164 PTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDDGR 214

ECF_ATPase_1

TIGR04520

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ...

381-593

7.67e-39

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]

Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 143.72 E-value: 7.67e-39

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTT---LNQILeltKPEAGSIEILGTDVavLDAAARRRLRTELQVVFQDP----VAS 453
Cdd:TIGR04520  19 KNVSLSIEKGEFVAIIGHNGSGKSTLaklLNGLL---LPTSGKVTVDGLDT--LDEENLWEIRKKVGMVFQNPdnqfVGA 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 454 LdprlpVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:TIGR04520  94 T-----VEDDVAFGLENLGVPREEMRKRVDEALKLVGMEDF-RDREPHLLSGGQKQRVAIAGVLAMRPDIIILDEATSML 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 534 DVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVkHLAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:TIGR04520 168 DPKGRKEVLETIRKLNKEEGITVISITHDMEEA-VLADRVIVMNKGKIVAEGTPREIFSQ 226

phnK

PRK11701

phosphonate C-P lyase system protein PhnK; Provisional

1-258

1.07e-38

phosphonate C-P lyase system protein PhnK; Provisional

Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 143.14 E-value: 1.07e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDievpAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGLSD 80
Cdd:PRK11701    3 DQPLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGRMI-----GTVFQDPMSALTPVYTIGDQIAEAI----EIHSREIsradaRRRAVELLELVGIaqPERRARAF 151
Cdd:PRK11701   76 YALSEAERRRLlrtewGFVHQHPRDGLRMQVSAGGNIGERLmavgARHYGDI-----RATAGDWLERVEI--DAARIDDL 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 152 PHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAG 231
Cdd:PRK11701  149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228

                         250       260
                  ....*....|....*....|....*..
gi 1424538268 232 RPVEIAAVDELYRDRRMPYTVGLLGSV 258
Cdd:PRK11701  229 RVVESGLTDQVLDDPQHPYTQLLVSSV 255

ABC_ModC_molybdenum_transporter

cd03297

ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ...

383-585

1.10e-38

ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 141.66 E-value: 1.10e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTlGIVGESGSGKSTTLNQILELTKPEAGSIEILGT---DVAV-LDAAARRRlrtELQVVFQDpvASLDPRL 458
Cdd:cd03297    17 IDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfDSRKkINLPPQQR---KIGLVFQQ--YALFPHL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 PVYDVIAEPLRanGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:cd03297    91 NVRENLAFGLK--RKRNREDRISVDELLDLLGLDHL-LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALR 167

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03297   168 LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214

ABC_FtsE

cd03292

Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ...

381-581

1.24e-38

Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages

Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 141.78 E-value: 1.24e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDpvASLDPRLPV 460
Cdd:cd03292    18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQD--FRLLPDRNV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03292    96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHK-HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1424538268 541 IVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:cd03292   175 IMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214

ABC_Metallic_Cations

cd03235

ATP-binding cassette domain of the metal-type transporters; This family includes transporters ...

6-228

2.12e-38

ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 140.75 E-value: 2.12e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   6 EVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHA--M 83
Cdd:cd03235     1 EVEDLTVSYG----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIgyV 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRG---RMIGTVFQDPMSALTPvyTIGdqiaeaieiHSREISRADaRRRAVELLELVGIAQPERRARAfphELSGGER 160
Cdd:cd03235    74 PQRRSidrDFPISVRDVVLMGLYG--HKG---------LFRRLSKAD-KAKVDEALERVGLSELADRQIG---ELSGGQQ 138

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVM 228
Cdd:cd03235   139 QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLL 205

ThiQ

COG3840

ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];

383-603

2.15e-38

ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];

Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 141.43 E-value: 2.15e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARrrlrtELQVVFQDpvASLDPRLPVYD 462
Cdd:COG3840    18 FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAER-----PVSMLFQE--NNLFPHLTVAQ 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIV 542
Cdd:COG3840    91 NIGLGLRPGLKLTAEQRAQVEQALERVGLAGL-LDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEML 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 543 NLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLL 603
Cdd:COG3840   170 DLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYL 230

PhnL

COG4778

Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ...

350-576

2.17e-38

Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];

Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 141.42 E-value: 2.17e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 350 PVVLRVSDLTKTYRL-TKGVVVRRRVgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIL--GT 426
Cdd:COG4778     2 TTLLEVENLSKTFTLhLQGGKRLPVL------DGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdGG 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 427 DVAVLDAAARR--RLRTE--------LQVVfqdpvasldPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDA 496
Cdd:COG4778    76 WVDLAQASPREilALRRRtigyvsqfLRVI---------PRVSALDVVAEPLLERGVDREEARARARELLARLNLPERLW 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 497 SRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVM 576
Cdd:COG4778   147 DLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDV 225

heterocyst_DevA

TIGR02982

ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ...

4-232

2.37e-38

ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 140.92 E-value: 2.37e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLpeyARV-SGSIRLHGKELLGLSDHA 82
Cdd:TIGR02982   1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTL-LTLIGGL---RSVqEGSLKVLGQELHGASKKQ 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSQIRgRMIGTVFQDpmSALTPVYTIGDQIAEAIEIHsREISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQR 162
Cdd:TIGR02982  77 LVQLR-RRIGYIFQA--HNLLGFLTARQNVQMALELQ-PNLSYQEARERARAMLEAVGL---GDHLNYYPHNLSGGQKQR 149

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT-ARDvTGAAVLIITHD---LGVvsefADRALVMYAGR 232
Cdd:TIGR02982 150 VAIARALVHHPKLVLADEPTAALDSKSGRDVVELMQKlAKE-QGCTILMVTHDnriLDV----ADRILQMEDGK 218

potA

TIGR01187

spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ...

395-606

3.09e-38

spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]

Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 143.79 E-value: 3.09e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 395 IVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAARRRlrtELQVVFQDpvASLDPRLPVYDVIAEPLRANGFH 474
Cdd:TIGR01187   1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT--NVPPHLR---HINMVFQS--YALFPHMTVEENVAFGLKMRKVP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 475 RHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGL 554
Cdd:TIGR01187  74 RAEIKPRVLEALRLVQLEEF-ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 555 SYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAV 606
Cdd:TIGR01187 153 TFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEI 204

ECF_ATPase_1

TIGR04520

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ...

11-282

4.83e-38

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]

Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 141.80 E-value: 4.83e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELLglSDHAMSQIRgR 89
Cdd:TIGR04520   5 NVSFSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLlPT----SGKVTVDGLDTL--DEENLWEIR-K 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDP----MSAltpvyTIGDQIAEAIEihSREISRADARRRAVELLELVGIAQPERRArafPHELSGGERQRVVI 165
Cdd:TIGR04520  78 KVGMVFQNPdnqfVGA-----TVEDDVAFGLE--NLGVPREEMRKRVDEALKLVGMEDFRDRE---PHLLSGGQKQRVAI 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 166 AIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDELYRD 245
Cdd:TIGR04520 148 AGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEGTPREIFSQ 226

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1424538268 246 RRMPYTVGLlgSVP---RLDAAQGTRLIPIPGAPPTMTSL 282
Cdd:TIGR04520 227 VELLKEIGL--DVPfitELAKALKKRGIPLPPDILTEEEL 264

PstB

COG1117

ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ...

382-600

9.54e-38

ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 140.56 E-value: 9.54e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKST---TLNQILELTkPEA---GSIEILGTDV--AVLDAAArrrLRTELQVVFQDPVas 453
Cdd:COG1117    29 DINLDIPENKVTALIGPSGCGKSTllrCLNRMNDLI-PGArveGEILLDGEDIydPDVDVVE---LRRRVGMVFQKPN-- 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 454 ldPrLP--VYDVIAEPLRANGFH-RHECEERVAELLAVVGL-----DHSDASryPAEFSGGQKQRIGIARALALQPKILA 525
Cdd:COG1117   103 --P-FPksIYDNVAYGLRLHGIKsKSELDEIVEESLRKAALwdevkDRLKKS--ALGLSGGQQQRLCIARALAVEPEVLL 177

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 526 LDEPVSALD-VSIQAgIVNLLLDLQRRFglSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTR 600
Cdd:COG1117   178 MDEPTSALDpISTAK-IEELILELKKDY--TIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIFTNPKDKRTE 250

ABC_CysA_sulfate_importer

cd03296

ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ...

22-257

9.85e-38

Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 139.78 E-value: 9.85e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpEYARvSGSIRLHGKELLGLSdhamsqIRGRMIGTVFQDpmSA 101
Cdd:cd03296    16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL--ERPD-SGTILFGGEDATDVP------VQERNVGFVFQH--YA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTPVYTIGDQIAEAIEIH--SREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICD 179
Cdd:cd03296    85 LFRHMTVFDNVAFGLRVKprSERPPEAEIRAKVHELLKLVQLDWLADR---YPAQLSGGQRQRVALARALAVEPKVLLLD 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 180 EPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLGS 257
Cdd:cd03296   162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFLGE 239

ABC_PstB_phosphate_transporter

cd03260

ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ...

5-242

1.04e-37

Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 139.62 E-value: 1.04e-37

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDievpAVRGTSYHIDPGEVLAIVGESGCGKTT--AALAVIGLLPEYARVSGSIRLHGKELLGLSDHA 82
Cdd:cd03260     1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTllRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSqIRgRMIGTVFQDPMSALTPVYtigDQIAEAIEIHsREISRADARRRAVELLELVGIAqPERRARAFPHELSGGERQR 162
Cdd:cd03260    77 LE-LR-RRVGMVFQKPNPFPGSIY---DNVAYGLRLH-GIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQR 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTgaAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:cd03260   150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227

ABC_PotA_N

cd03300

ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ...

22-244

1.08e-37

Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 139.68 E-value: 1.08e-37

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGL-LPEyarvSGSIRLHGKELLGLSDHAmsqirgRMIGTVFQDpmS 100
Cdd:cd03300    14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFeTPT----SGEILLDGKDITNLPPHK------RPVNTVFQN--Y 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 ALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDE 180
Cdd:cd03300    82 ALFPHLTVFENIAFGLRL--KKLPKAEIKERVAEALDLVQLEGYANR---KPSQLSGGQQQRVAIARALVNEPKVLLLDE 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 181 PTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYR 244
Cdd:cd03300   157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220

FetA

COG4619

ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];

381-581

1.19e-37

ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 138.80 E-value: 1.19e-37

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtelQV--VFQDPVASLDPrl 458
Cdd:COG4619    17 SPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRR-----QVayVPQEPALWGGT-- 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 pVYDVIAEPLRANgfHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:COG4619    90 -VRDNLPFPFQLR--ERKFDRERALELLERLGLPPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:COG4619   167 RRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209

PhnC

COG3638

ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ...

3-245

2.34e-37

ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 139.04 E-value: 2.34e-37

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFETEdieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHA 82
Cdd:COG3638     1 PMLELRNLSKRYPGG---TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGEILVDGQDVTALRGRA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSQIRGRmIGTVFQDP-----MSALTPVYT--IGDqiaeaieiHS------REISRADaRRRAVELLELVGIA-QPERRA 148
Cdd:COG3638    75 LRRLRRR-IGMIFQQFnlvprLSVLTNVLAgrLGR--------TStwrsllGLFPPED-RERALEALERVGLAdKAYQRA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 149 rafpHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVM 228
Cdd:COG3638   145 ----DQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGL 220

                         250       260
                  ....*....|....*....|....*
gi 1424538268 229 YAGR------PVEI--AAVDELYRD 245
Cdd:COG3638   221 RDGRvvfdgpPAELtdAVLREIYGG 245

TauB

COG4525

ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];

381-584

2.83e-37

ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 139.23 E-value: 2.83e-37

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGtdVAVLDAAARRrlrtelQVVFQDpvASLDPRLPV 460
Cdd:COG4525    24 QDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDG--VPVTGPGADR------GVVFQK--DALLPWLNV 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV----S 536
Cdd:COG4525    94 LDNVAFGLRLRGVPKAERRARAEELLALVGLADF-ARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDAltreQ 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1424538268 537 IQAgivnLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVM--YRGMIVEQ 584
Cdd:COG4525   173 MQE----LLLDVWQRTGKGVFLITHSVEEALFLATRLVVMspGPGRIVER 218

glnQ

PRK09493

glutamine ABC transporter ATP-binding protein GlnQ;

381-606

4.57e-37

glutamine ABC transporter ATP-binding protein GlnQ;

Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 138.30 E-value: 4.57e-37

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGsiEILGTDVAVLDAAARRRL-RTELQVVFQDpvASLDPRLP 459
Cdd:PRK09493   18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG--DLIVDGLKVNDPKVDERLiRQEAGMVFQQ--FYLFPHLT 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIA-EPLRANGFHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:PRK09493   94 ALENVMfGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 539 AGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAV 606
Cdd:PRK09493  173 HEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQHV 239

ABC_Pro_Gly_Betaine

cd03294

ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ...

21-242

6.01e-37

Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 138.55 E-value: 6.01e-37

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHAMSQIRGRMIGTVFQDpmS 100
Cdd:cd03294    37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP---TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS--F 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 ALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDE 180
Cdd:cd03294   112 ALLPHRTVLENVAFGLEV--QGVPRAEREERAAEALELVGLEGWEHK---YPDELSGGMQQRVGLARALAVDPDILLMDE 186

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 181 PTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:cd03294   187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248

ABC_Class3

cd03229

ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ...

5-232

6.22e-37

Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 135.78 E-value: 6.22e-37

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSDhaMS 84
Cdd:cd03229     1 LELKNVSKRYG----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLED--EL 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRGRMIGTVFQDPmsALTPVYTIGDQIAEAieihsreisradarrravellelvgiaqperrarafpheLSGGERQRVV 164
Cdd:cd03229    72 PPLRRRIGMVFQDF--ALFPHLTVLENIALG---------------------------------------LSGGQQQRVA 110

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03229   111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

met_CoM_red_A2

TIGR03269

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ...

11-590

1.31e-36

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]

Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 143.79 E-value: 1.31e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVpaVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYARVSGSIRLH------------------- 71
Cdd:TIGR03269   5 NLTKKFDGKEV--LKNISFTIEEGEVLGILGRSGAGKSVL-MHVLRGMDQYEPTSGRIIYHvalcekcgyverpskvgep 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  72 ----GKEL-------LGLSDHAMSQIRGRmIGTVFQDPMsALTPVYTIGDQIAEAIeiHSREISRADARRRAVELLELVg 140
Cdd:TIGR03269  82 cpvcGGTLepeevdfWNLSDKLRRRIRKR-IAIMLQRTF-ALYGDDTVLDNVLEAL--EEIGYEGKEAVGRAVDLIEMV- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 141 iaQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSE 220
Cdd:TIGR03269 157 --QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 221 FADRALVMYAGRPVEIAAVDELyrdrrmpyTVGLLGSVPRLDAAQgtrlipipgapptmtslspgactfaprcplaidEC 300
Cdd:TIGR03269 235 LSDKAIWLENGEIKEEGTPDEV--------VAVFMEGVSEVEKEC---------------------------------EV 273

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 301 LSAEPdlvrvadghwaacirtddvagrsaadvfgvstqpppnnaaggqppvVLRVSDLTKTY-RLTKGVVVRRrvgevra 379
Cdd:TIGR03269 274 EVGEP----------------------------------------------IIKVRNVSKRYiSVDRGVVKAV------- 300

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 380 vDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIL----GTDVAVLDAAARRRLRTELQVVFQDpvASLD 455
Cdd:TIGR03269 301 -DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvgdeWVDMTKPGPDGRGRAKRYIGILHQE--YDLY 377

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 PRLPVYDVIAEPLRANgFHRHECEERVAELLAVVGLDHSDA----SRYPAEFSGGQKQRIGIARALALQPKILALDEPVS 531
Cdd:TIGR03269 378 PHRTVLDNLTEAIGLE-LPDELARMKAVITLKMVGFDEEKAeeilDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 532 ALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515

ABC_FtsE

cd03292

Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ...

21-232

1.51e-36

Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 136.00 E-value: 1.51e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEYAR-VSGSIRLHGKELLGLSDHAMSQIRgRMIGTVFQDpm 99
Cdd:cd03292    14 TAALDGINISISAGEFVFLVGPSGAGKST----LLKLIYKEELpTSGTIRVNGQDVSDLRGRAIPYLR-RKIGVVFQD-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 100 SALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICD 179
Cdd:cd03292    87 FRLLPDRNVYENVAFALEV--TGVPPREIRKRVPAALELVGLSH---KHRALPAELSGGEQQRVAIARAIVNSPTILIAD 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 180 EPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03292   162 EPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGK 213

ABC_Iron-Siderophores_B12_Hemin

cd03214

ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ...

381-585

1.70e-36

ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 134.49 E-value: 1.70e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTelqVVFQdpvasldprlpv 460
Cdd:cd03214    16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIA---YVPQ------------ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 ydviaeplrangfhrheceervaeLLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03214    81 ------------------------ALELLGLAHL-ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03214   136 LLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ModC

COG4148

ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ...

383-594

2.21e-36

ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis

Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 139.47 E-value: 2.21e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavLDAAARRRLRTE---LQVVFQDpvASLDPRLP 459
Cdd:COG4148    18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVL--QDSARGIFLPPHrrrIGYVFQE--ARLFPHLS 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VydviaeplRAN---GFHRHECEERVAELLAVV---GLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:COG4148    94 V--------RGNllyGRKRAPRAERRISFDEVVellGIGHL-LDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAAL 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 534 DVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNP 594
Cdd:COG4148   165 DLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225

ABC_Mj1267_LivG_branched

cd03219

ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ...

5-232

3.58e-36

Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 135.64 E-value: 3.58e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHams 84
Cdd:cd03219     1 LEVRGLTKRFG----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPH--- 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRGRMIGTVFQDP-----MSALTPVYtIGDQIA--EAIEIHSREISRADARRRAVELLELVGIAqpeRRARAFPHELSG 157
Cdd:cd03219    71 EIARLGIGRTFQIPrlfpeLTVLENVM-VAAQARtgSGLLLARARREEREARERAEELLERVGLA---DLADRPAGELSY 146

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03219   147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGR 220

ABC_PhnC_transporter

cd03256

ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ...

353-590

3.66e-36

ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 135.77 E-value: 3.66e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKgvvvrrrvgevRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03256     1 IEVENLSKTYPNGK-----------KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLRTELQVVFQDPvaSLDPRLPVYDVI-------AEPLRA--NGFHRHEcEERVAELLAVVGLDHsDASRYPAEF 503
Cdd:cd03256    70 GKALRQLRRQIGMIFQQF--NLIERLSVLENVlsgrlgrRSTWRSlfGLFPKEE-KQRALAALERVGLLD-KAYQRADQL 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 504 SGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVE 583
Cdd:cd03256   146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225


                  ....*..
gi 1424538268 584 QGESDQV 590
Cdd:cd03256   226 DGPPAEL 232

PRK14246

phosphate ABC transporter ATP-binding protein; Provisional

383-601

5.40e-36

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 135.56 E-value: 5.40e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKST---TLNQILELTKPEA---GSIEILGTDVAVLDAAarrRLRTELQVVFQDPvaSLDP 456
Cdd:PRK14246   29 ITIKIPNNSIFGIMGPSGSGKSTllkVLNRLIEIYDSKIkvdGKVLYFGKDIFQIDAI---KLRKEVGMVFQQP--NPFP 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RLPVYDVIAEPLRANGF-HRHECEERVAELLAVVGL--DHSDASRYPA-EFSGGQKQRIGIARALALQPKILALDEPVSA 532
Cdd:PRK14246  104 HLSIYDNIAYPLKSHGIkEKREIKKIVEECLRKVGLwkEVYDRLNSPAsQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 533 LDVSIQAGIVNLLLDLQRRfgLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRR 601
Cdd:PRK14246  184 IDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250

ABC_PhnC_transporter

cd03256

ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ...

5-243

5.78e-36

Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 135.00 E-value: 5.78e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEdieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHAMS 84
Cdd:cd03256     1 IEVENLSKTYPNG---KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDINKLKGKALR 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRGRmIGTVFQDP-----MSALTPVytigdqIAEAIEIHS------REISRADaRRRAVELLELVGIA-QPERRARafp 152
Cdd:cd03256    75 QLRRQ-IGMIFQQFnlierLSVLENV------LSGRLGRRStwrslfGLFPKEE-KQRALAALERVGLLdKAYQRAD--- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 153 hELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03256   144 -QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222

                         250
                  ....*....|....*....
gi 1424538268 233 ------PVEI--AAVDELY 243
Cdd:cd03256   223 ivfdgpPAELtdEVLDEIY 241

ABC_Iron-Siderophores_B12_Hemin

cd03214

ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ...

6-232

6.05e-36

Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 132.94 E-value: 6.05e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   6 EVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSdhamSQ 85
Cdd:cd03214     1 EVENLSVGYGGRTV----LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLS----PK 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  86 IRGRMIGTVFQdpmsaltpvytigdqiaeaieihsreisradarrraveLLELVGIAqpERRARAFpHELSGGERQRVVI 165
Cdd:cd03214    70 ELARKIAYVPQ--------------------------------------ALELLGLA--HLADRPF-NELSGGERQRVLL 108

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 166 AIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03214   109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175

ABC_Metallic_Cations

cd03235

ATP-binding cassette domain of the metal-type transporters; This family includes transporters ...

382-581

6.48e-36

Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 134.20 E-value: 6.48e-36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavldaaarRRLRTELQVVFQdpVASLDPRLP-- 459
Cdd:cd03235    17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL--------EKERKRIGYVPQ--RRSIDRDFPis 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIAEPL--RANGFHR--HECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV 535
Cdd:cd03235    87 VRDVVLMGLygHKGLFRRlsKADKAKVDEALERVGLSEL-ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1424538268 536 SIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:cd03235   166 KTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRTVV 210

PRK10851

sulfate/thiosulfate ABC transporter ATP-binding protein CysA;

383-613

1.01e-35

sulfate/thiosulfate ABC transporter ATP-binding protein CysA;

Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 137.52 E-value: 1.01e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRrlrteLQVVFQDpvASLDPRLPVYD 462
Cdd:PRK10851   21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK-----VGFVFQH--YALFRHMTVFD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPL----RANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:PRK10851   94 NIAFGLtvlpRRERPNAAAIKAKVTQLLEMVQLAHL-ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPRAHSDV 613
Cdd:PRK10851  173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEVNRLQGTI 247

PRK15093

peptide ABC transporter ATP-binding protein SapD;

381-607

1.02e-35

peptide ABC transporter ATP-binding protein SapD;

Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 136.86 E-value: 1.02e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPE----AGSIEILGTDVAVLDAAARRRL-RTELQVVFQDPVASLD 455
Cdd:PRK15093   24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNwrvtADRMRFDDIDLLRLSPRERRKLvGHNVSMIFQEPQSCLD 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 PRLPVYDVIAEPL-----RANGFHRHECEERVA-ELLAVVGL-DHSDASR-YPAEFSGGQKQRIGIARALALQPKILALD 527
Cdd:PRK15093  104 PSERVGRQLMQNIpgwtyKGRWWQRFGWRKRRAiELLHRVGIkDHKDAMRsFPYELTEGECQKVMIAIALANQPRLLIAD 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 528 EPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVP 607
Cdd:PRK15093  184 EPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAIP 263

SunT

COG2274

ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ...

381-590

1.02e-35

ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];

Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 143.05 E-value: 1.02e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrteLQVVFQDPVasldprlPV 460
Cdd:COG2274   492 DNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQ---IGVVLQDVF-------LF 561

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRanGFHRHECEERVAELLAVVGLdHSDASRYP-----------AEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:COG2274   562 SGTIRENIT--LGDPDATDEEIIEAARLAGL-HDFIEALPmgydtvvgeggSNLSGGQRQRLAIARALLRNPRILILDEA 638

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 530 VSALDVSIQAGIVNLLLDLQRRFGLsyLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQV 590
Cdd:COG2274   639 TSALDAETEAIILENLRRLLKGRTV--IIIAHRLSTIRL-ADRIIVLDKGRIVEDGTHEEL 696

ABC_OpuCA_Osmoprotection

cd03295

ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ...

11-244

1.09e-35

Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 134.35 E-value: 1.09e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEvPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGLSDhamSQIRgRM 90
Cdd:cd03295     5 NVTKRYGGGK-KAVNNLNLEIAKGEFLVLIGPSGSGKTTT-MKMINRLIEPT--SGEIFIDGEDIREQDP---VELR-RK 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDpmSALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRARaFPHELSGGERQRVVIAIAIA 170
Cdd:cd03295    77 IGYVIQQ--IGLFPHMTVEENIALVPKL--LKWPKEKIRERADELLALVGLDPAEFADR-YPHELSGGQQQRVGVARALA 151

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 171 NDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYR 244
Cdd:cd03295   152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225

FetA

COG4619

ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];

5-232

2.13e-35

ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 132.25 E-value: 2.13e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELlglSDHAMS 84
Cdd:COG4619     1 LELEGLSFRVGGKPI----LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPT---SGEIYLDGKPL---SAMPPP 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRgRMIGTVFQDPmsALTPvYTIGDQIAEAIEIHSREISRADARrravELLELVGIAQP--ERRArafpHELSGGERQR 162
Cdd:COG4619    71 EWR-RQVAYVPQEP--ALWG-GTVRDNLPFPFQLRERKFDRERAL----ELLERLGLPPDilDKPV----ERLSGGERQR 138

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:COG4619   139 LALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGR 208

ABC_tran

pfam00005

ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...

24-183

2.60e-35

Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 130.08 E-value: 2.60e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHamsqIRGRMIGTVFQDPmsALT 103
Cdd:pfam00005   1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT---EGTILLDGQDLTDDERK----SLRKEIGYVFQDP--QLF 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 104 PVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGI-AQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
Cdd:pfam00005  72 PRLTVRENLRLGLLL--KGLSKREKDARAEEALEKLGLgDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149


                  .
gi 1424538268 183 T 183
Cdd:pfam00005 150 A 150

YbbA

COG4181

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ...

349-583

3.79e-35

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 132.56 E-value: 3.79e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 349 PPVVLRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDV 428
Cdd:COG4181     5 SAPIIELRGLTKTVGTGAGELTIL--------KGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 429 AVLDAAARRRLRTE-LQVVFQdpvaS--LDPRLPVYDVIAEPLRANGfhRHECEERVAELLAVVGLDHSdASRYPAEFSG 505
Cdd:COG4181    77 FALDEDARARLRARhVGFVFQ----SfqLLPTLTALENVMLPLELAG--RRDARARARALLERVGLGHR-LDHYPAQLSG 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 506 GQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLsvvkHLA---HRVAVMYRGMIV 582
Cdd:COG4181   150 GEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDP----ALAarcDRVLRLRAGRLV 225


                  .
gi 1424538268 583 E 583
Cdd:COG4181   226 E 226

ABC_phnC

TIGR02315

phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ...

352-590

4.62e-35

phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]

Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 132.81 E-value: 4.62e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKgvvvrrrvgevRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL 431
Cdd:TIGR02315   1 MLEVENLSKVYPNGK-----------QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKL 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAARRRLRTELQVVFQDpvASLDPRLpvyDVIAEPLRA------------NGFHRHEcEERVAELLAVVGLDHSDASRy 499
Cdd:TIGR02315  70 RGKKLRKLRRRIGMIFQH--YNLIERL---TVLENVLHGrlgykptwrsllGRFSEED-KERALSALERVGLADKAYQR- 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 500 PAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRG 579
Cdd:TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222

                         250
                  ....*....|.
gi 1424538268 580 MIVEQGESDQV 590
Cdd:TIGR02315 223 EIVFDGAPSEL 233

ABC_DrrA

cd03265

Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ...

381-589

9.21e-35

Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 130.95 E-value: 9.21e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVaVLDAaarRRLRTELQVVFQDPvaSLDPRLPV 460
Cdd:cd03265    17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREP---REVRRRIGIVFQDL--SVDDELTG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03265    91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEA-ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAH 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQ 589
Cdd:cd03265   170 VWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218

3a0106s01

TIGR00968

sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]

23-261

9.31e-35

sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]

Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 131.46 E-value: 9.31e-35

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  23 AVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGL-LPEyarvSGSIRLHGKellglsDHAMSQIRGRMIGTVFQDpmSA 101
Cdd:TIGR00968  15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLeQPD----SGRIRLNGQ------DATRVHARDRKIGFVFQH--YA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:TIGR00968  83 LFKHLTVRDNIAFGLEI--RKHPKAKIKARVEELLELVQLEGLGDR---YPNQLSGGQRQRVALARALAVEPQVLLLDEP 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 182 TTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLGSVPRL 261
Cdd:TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEVNVL 237

TauB

COG4525

ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];

3-242

1.09e-34

ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 132.29 E-value: 1.09e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGlsdha 82
Cdd:COG4525     2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAP---SSGEITLDGVPVTG----- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 msqiRGRMIGTVFQDpmSALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQR 162
Cdd:COG4525    74 ----PGADRGVVFQK--DALLPWLNVLDNVAFGLRL--RGVPKAERRARAEELLALVGLADFARR---RIWQLSGGMRQR 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDV----TVQAQILDVLRTardvTGAAVLIITHDlgvVSE---FADRALVMyAGRPVE 235
Cdd:COG4525   143 VGIARALAADPRFLLMDEPFGALDAltreQMQELLLDVWQR----TGKGVFLITHS---VEEalfLATRLVVM-SPGPGR 214


                  ....*..
gi 1424538268 236 IAAVDEL 242
Cdd:COG4525   215 IVERLEL 221

potA

PRK09452

spermidine/putrescine ABC transporter ATP-binding protein PotA;

339-601

1.25e-34

spermidine/putrescine ABC transporter ATP-binding protein PotA;

Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 135.07 E-value: 1.25e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 339 PPPNNAAGGQPPVVLRVSDLTKTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEA 418
Cdd:PRK09452    1 SKKLNKQPSSLSPLVELRGISKSFDGKE------------VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 419 GSIEILGTDVAVLDAAARrrlrtELQVVFQDpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASR 498
Cdd:PRK09452   69 GRIMLDGQDITHVPAENR-----HVNTVFQS--YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF-AQR 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 499 YPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYR 578
Cdd:PRK09452  141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRD 220

                         250       260
                  ....*....|....*....|...
gi 1424538268 579 GMIVEQGESDQVFTNPQHEYTRR 601
Cdd:PRK09452  221 GRIEQDGTPREIYEEPKNLFVAR 243

ABCC_MRP_Like

cd03228

ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ...

381-579

2.07e-34

ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 128.27 E-value: 2.07e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTelqVVFQDPVasldprlpv 460
Cdd:cd03228    19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA---YVPQDPF--------- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 ydVIAEPLRANgfhrheceervaeLLavvgldhsdasrypaefSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03228    87 --LFSGTIREN-------------IL-----------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEAL 134

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1424538268 541 IVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRG 579
Cdd:cd03228   135 ILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDG 170

ABC_ThiQ_thiamine_transporter

cd03298

ATP-binding cassette domain of the thiamine transport system; Part of the ...

384-585

2.48e-34

ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 129.54 E-value: 2.48e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 384 SFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARrrlrtELQVVFQDpvASLDPRLPVYDV 463
Cdd:cd03298    18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADR-----PVSMLFQE--NNLFAHLTVEQN 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 464 IAEPLRANGFHRHECEERVAELLAVVGLDHSDAsRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVN 543
Cdd:cd03298    91 VGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1424538268 544 LLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03298   170 LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211

fbpC

PRK11432

ferric ABC transporter ATP-binding protein;

381-598

2.71e-34

ferric ABC transporter ATP-binding protein;

Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 133.69 E-value: 2.71e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAARRRlrtELQVVFQDpvASLDPRLPV 460
Cdd:PRK11432   23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT--HRSIQQR---DICMVFQS--YALFPHMSL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:PRK11432   96 GENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEY 598
Cdd:PRK11432  175 MREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232

ABC_ATPase

cd00267

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ...

381-579

4.03e-34

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 126.98 E-value: 4.03e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtELQVVFQdpvasldprlpv 460
Cdd:cd00267    16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR---RIGYVPQ------------ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 ydviaeplrangfhrheceervaellavvgldhsdasrypaeFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd00267    81 ------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRER 118

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1424538268 541 IVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRG 579
Cdd:cd00267   119 LLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDG 156

NatA

COG4555

ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ...

4-242

4.48e-34

ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];

Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 129.98 E-value: 4.48e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTA--ALAviGLLPEYarvSGSIRLHGKELLGLSDH 81
Cdd:COG4555     1 MIEVENLSKKYG----KVPALKDVSFTAKDGEITGLLGPNGAGKTTLlrMLA--GLLKPD---SGSILIDGEDVRKEPRE 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  82 AMSQIrgrmiGTVFQDPMsaLTPVYTIGDQIAEAIEIHsrEISRADARRRAVELLELVGIAQP-ERRArafpHELSGGER 160
Cdd:COG4555    72 ARRQI-----GVLPDERG--LYDRLTVRENIRYFAELY--GLFDEELKKRIEELIELLGLEEFlDRRV----GELSTGMK 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVD 240
Cdd:COG4555   139 KKVALARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKK-EGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLD 217


                  ..
gi 1424538268 241 EL 242
Cdd:COG4555   218 EL 219

cbiO

PRK13635

energy-coupling factor ABC transporter ATP-binding protein;

381-591

4.97e-34

energy-coupling factor ABC transporter ATP-binding protein;

Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 130.91 E-value: 4.97e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTdvaVLDAAARRRLRTELQVVFQDP----VASldp 456
Cdd:PRK13635   24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM---VLSEETVWDVRRQVGMVFQNPdnqfVGA--- 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 rlPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK13635   98 --TVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVF 591
Cdd:PRK13635  175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIF 228

modC_ABC

TIGR02142

molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ...

383-594

5.20e-34

molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]

Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 132.93 E-value: 5.20e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLE-QGRTlGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAARRRLRTE---LQVVFQDpvASLDPRL 458
Cdd:TIGR02142  16 ADFTLPgQGVT-AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF--DSRKGIFLPPEkrrIGYVFQE--ARLFPHL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 PVydviAEPL-----RANGFHRHECEERVAELLavvGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:TIGR02142  91 SV----RGNLrygmkRARPSERRISFERVIELL---GIGHL-LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 534 DVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNP 594
Cdd:TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223

ABC_phnC

TIGR02315

phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ...

4-244

5.28e-34

Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 129.73 E-value: 5.28e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIevpAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHAM 83
Cdd:TIGR02315   1 MLEVENLSKVYPNGKQ---ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDITKLRGKKL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRgRMIGTVFQD-----PMSALTPVYTIGDQIAEAIEIHSREISRADaRRRAVELLELVGIA-QPERRARafphELSG 157
Cdd:TIGR02315  75 RKLR-RRIGMIFQHynlieRLTVLENVLHGRLGYKPTWRSLLGRFSEED-KERALSALERVGLAdKAYQRAD----QLSG 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRAL------VMYAG 231
Cdd:TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVglkageIVFDG 228

                         250
                  ....*....|....*
gi 1424538268 232 RPVEI--AAVDELYR 244
Cdd:TIGR02315 229 APSELddEVLRHIYG 243

ABC_cobalt_CbiO_domain2

cd03226

Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ...

6-231

5.70e-34

Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 128.53 E-value: 5.70e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   6 EVTDLNVTFEtEDIEVpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKEllglsdhAMSQ 85
Cdd:cd03226     1 RIENISFSYK-KGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKP-------IKAK 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  86 IRGRMIGTVFQDPMSALTpvytiGDQIAEAIEIHSREISraDARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVI 165
Cdd:cd03226    68 ERRKSIGYVMQDVDYQLF-----TDSVREELLLGLKELD--AGNEQAETVLKDLDLYALKER---HPLSLSGGQKQRLAI 137

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 166 AIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAG 231
Cdd:cd03226   138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANG 202

CP_lyasePhnK

TIGR02323

phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ...

23-258

5.77e-34

Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 129.95 E-value: 5.77e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  23 AVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAMSQIRGRMI-----GTVFQD 97
Cdd:TIGR02323  18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLmrtewGFVHQN 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  98 PMSALTPVYTIGDQIAE-AIEIHSREIsrADARRRAVELLELVGIaqPERRARAFPHELSGGERQRVVIAIAIANDPDLL 176
Cdd:TIGR02323  95 PRDGLRMRVSAGANIGErLMAIGARHY--GNIRATAQDWLEEVEI--DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 177 ICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLG 256
Cdd:TIGR02323 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVS 250


                  ..
gi 1424538268 257 SV 258
Cdd:TIGR02323 251 SI 252

PRK10070

proline/glycine betaine ABC transporter ATP-binding protein ProV;

384-606

6.39e-34

proline/glycine betaine ABC transporter ATP-binding protein ProV;

Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 133.62 E-value: 6.39e-34

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 384 SFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVA-VLDAAARRRLRTELQVVFQDpvASLDPRLPVYD 462
Cdd:PRK10070   48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAkISDAELREVRRKKIAMVFQS--FALMPHMTVLD 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIV 542
Cdd:PRK10070  126 NTAFGMELAGINAEERREKALDALRQVGLENY-AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 543 NLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAV 606
Cdd:PRK10070  205 DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGV 268

cbiO

PRK13641

energy-coupling factor transporter ATPase;

381-595

1.21e-33

energy-coupling factor transporter ATPase;

Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 129.95 E-value: 1.21e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDV-AVLDAAARRRLRTELQVVFQDPVASLDPRLP 459
Cdd:PRK13641   24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItPETGNKNLKKLRKKVSLVFQFPEAQLFENTV 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIAEPLRAnGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK13641  104 LKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 540 GIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK13641  183 EMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237

ABCC_MRP_Like

cd03228

ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ...

11-232

1.83e-33

Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 125.57 E-value: 1.83e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAMSqirgRM 90
Cdd:cd03228     5 NVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLR----KN 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDP--MSAltpvyTIGDQIaeaieihsreisradarrravellelvgiaqperrarafpheLSGGERQRVVIAIA 168
Cdd:cd03228    78 IAYVPQDPflFSG-----TIRENI------------------------------------------LSGGQRQRIAIARA 110

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 169 IANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDLGVVsEFADRALVMYAGR 232
Cdd:cd03228   111 LLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTI-RDADRIIVLDDGR 171

ABC_ATPase

cd00267

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ...

6-232

1.94e-33

Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 125.05 E-value: 1.94e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   6 EVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAmsq 85
Cdd:cd00267     1 EIENLSFRYG----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEE--- 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  86 iRGRMIGTVFQdpmsaltpvytigdqiaeaieihsreisradarrravellelvgiaqperrarafpheLSGGERQRVVI 165
Cdd:cd00267    71 -LRRRIGYVPQ----------------------------------------------------------LSGGQRQRVAL 91

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 166 AIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd00267    92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDPELAELAADRVIVLKDGK 157

CP_lyasePhnL

TIGR02324

phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P ...

353-573

3.20e-33

phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

Pssm-ID: 131377 [Multi-domain] Cd Length: 224 Bit Score: 126.74 E-value: 3.20e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKgvvvrRRVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEI--LGTDVAV 430
Cdd:TIGR02324   2 LEVEDLSKTFTLHQ-----QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVrhEGAWVDL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 431 LDAAARRRL---RTELQVVFQdpvaSLD--PRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSG 505
Cdd:TIGR02324  77 AQASPREVLevrRKTIGYVSQ----FLRviPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSG 152

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 506 GQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRV 573
Cdd:TIGR02324 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRV 219

PhnL

COG4778

Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ...

1-232

3.58e-33

Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];

Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 126.78 E-value: 3.58e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTF---ETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGllpEYARVSGSIRLHGKE--- 74
Cdd:COG4778     1 MTTLLEVENLSKTFtlhLQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYG---NYLPDSGSILVRHDGgwv 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  75 -LLGLSDHAMSQIRGRMIGTVFQ----DP-MSALtpvytigDQIAEAIEihSREISRADARRRAVELLELVGIaqPERRA 148
Cdd:COG4778    78 dLAQASPREILALRRRTIGYVSQflrvIPrVSAL-------DVVAEPLL--ERGVDREEARARARELLARLNL--PERLW 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 149 RAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVM 228
Cdd:COG4778   147 DLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKA-RGTAIIGIFHDEEVREAVADRVVDV 225


                  ....
gi 1424538268 229 YAGR 232
Cdd:COG4778   226 TPFS 229

lolD

PRK11629

lipoprotein-releasing ABC transporter ATP-binding protein LolD;

383-573

3.93e-33

lipoprotein-releasing ABC transporter ATP-binding protein LolD;

Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 126.85 E-value: 3.93e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRT-ELQVVFQdpVASLDPRLPVY 461
Cdd:PRK11629   28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNqKLGFIYQ--FHHLLPDFTAL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAEPLRANGFHRHECEERVAELLAVVGLDHSDASRyPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGI 541
Cdd:PRK11629  106 ENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1424538268 542 VNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRV 573
Cdd:PRK11629  185 FQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216

CydD

COG4988

ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ...

5-244

4.38e-33

ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 133.73 E-value: 4.38e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDievPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAms 84
Cdd:COG4988   337 IELEDVSFSYPGGR---PALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPY---SGSILINGVDLSDLDPAS-- 408

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qiRGRMIGTVFQDPmsaltpvYTIGDQIAEAIEIHSREISRADARR--RAVELLELV-----GIAQP--ERRARafpheL 155
Cdd:COG4988   409 --WRRQIAWVPQNP-------YLFAGTIRENLRLGRPDASDEELEAalEAAGLDEFVaalpdGLDTPlgEGGRG-----L 474

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 156 SGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDLGVVsEFADRALVMYAGRPVE 235
Cdd:COG4988   475 SGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALL-AQADRILVLDDGRIVE 551


                  ....*....
gi 1424538268 236 IAAVDELYR 244
Cdd:COG4988   552 QGTHEELLA 560

ABC_subfamily_A

cd03263

ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ...

353-589

4.86e-33

ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 126.08 E-value: 4.86e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRltkgvvvrrrVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavld 432
Cdd:cd03263     1 LQIRNLTKTYK----------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI---- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLRTELQVVFQDPVasLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGL-DHSDasRYPAEFSGGQKQRI 511
Cdd:cd03263    67 RTDRKAARQSLGYCPQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLtDKAN--KRARTLSGGMKRKL 142

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 512 GIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQ 589
Cdd:cd03263   143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218

CydD

COG4988

ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ...

325-589

5.96e-33

ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 133.34 E-value: 5.96e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 325 AGRSAAD-VFGVSTQPPPNNAAGGQP-----PVVLRVSDLTKTYrltkgvvvrrrVGEVRAVDGISFTLEQGRTLGIVGE 398
Cdd:COG4988   303 NGIAAAEkIFALLDAPEPAAPAGTAPlpaagPPSIELEDVSFSY-----------PGGRPALDGLSLTIPPGERVALVGP 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 399 SGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrteLQVVFQDPVasldprlpvydVIAEPLRAN-GFHRHE 477
Cdd:COG4988   372 SGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQ---IAWVPQNPY-----------LFAGTIRENlRLGRPD 437

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 478 C-EERVAELLAVVGLDHsDASRYP-----------AEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLL 545
Cdd:COG4988   438 AsDEELEAALEAAGLDE-FVAALPdgldtplgeggRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQAL 516

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1424538268 546 LDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQ 589
Cdd:COG4988   517 RRLAK--GRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEE 557

cbiO

PRK13639

cobalt transporter ATP-binding subunit; Provisional

381-595

7.63e-33

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 127.50 E-value: 7.63e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTT---LNQILeltKPEAGSIEILGTDVAvLDAAARRRLRTELQVVFQDPVASLDPR 457
Cdd:PRK13639   19 KGINFKAEKGEMVALLGPNGAGKSTLflhFNGIL---KPTSGEVLIKGEPIK-YDKKSLLEVRKTVGIVFQNPDDQLFAP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 LPVYDVIAEPLRAnGFHRHECEERVAELLAVVGLDHSDaSRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSI 537
Cdd:PRK13639   95 TVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 538 QAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK13639  173 ASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIE 229

potG

PRK11607

putrescine ABC transporter ATP-binding subunit PotG;

339-606

9.49e-33

putrescine ABC transporter ATP-binding subunit PotG;

Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 129.96 E-value: 9.49e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 339 PPPNNAAGGQPPVVLRVSDLTKTYrltkgvvvrrrvGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEA 418
Cdd:PRK11607    6 PRPQAKTRKALTPLLEIRNLTKSF------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 419 GSIEILGTDVAVLDAAARrrlrtELQVVFQDpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASR 498
Cdd:PRK11607   74 GQIMLDGVDLSHVPPYQR-----PINMMFQS--YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF-AKR 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 499 YPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYR 578
Cdd:PRK11607  146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225

                         250       260
                  ....*....|....*....|....*...
gi 1424538268 579 GMIVEQGESDQVFTNPQHEYTRRLLAAV 606
Cdd:PRK11607  226 GKFVQIGEPEEIYEHPTTRYSAEFIGSV 253

ABC_DR_subfamily_A

cd03230

ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ...

5-232

1.13e-32

Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 123.66 E-value: 1.13e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAMs 84
Cdd:cd03230     1 IEVRNLSKRYGK----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVK- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qirgRMIGTVFQDPMsaLTPVYTIGDQIaeaieihsreisradarrravellelvgiaqperrarafphELSGGERQRVV 164
Cdd:cd03230    73 ----RRIGYLPEEPS--LYENLTVRENL-----------------------------------------KLSGGMKQRLA 105

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03230   106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILEEAERLCDRVAILNNGR 172

L_ocin_972_ABC

TIGR03608

putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ...

7-224

1.43e-32

putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]

Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 124.26 E-value: 1.43e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   7 VTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGLSDHAMSQI 86
Cdd:TIGR03608   1 LKNISKKFGDKVI----LDDLNLTIEKGKMYAIIGESGSGKSTL-LNIIGLLEKFD--SGQVYLNGQETPPLNSKKASKF 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  87 RGRMIGTVFQDpmSALTPVYTIGDQIAEAIeIHSReISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIA 166
Cdd:TIGR03608  74 RREKLGYLFQN--FALIENETVEENLDLGL-KYKK-LSKKEKREKKKEALEKVGLNLKLKQ---KIYELSGGEQQRVALA 146

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 167 IAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLgVVSEFADR 224
Cdd:TIGR03608 147 RAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDP-EVAKQADR 202

ABC_NatA_sodium_exporter

cd03266

ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ...

353-585

1.83e-32

ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.

Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 124.40 E-value: 1.83e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVVVRRrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03266     2 ITADALTKRFRDVKKTVQAV--------DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLRtelqvVFQDPVAsLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIG 512
Cdd:cd03266    74 AEARRRLG-----FVSDSTG-LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-LDRRVGGFSTGMRQKVA 146

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 513 IARALALQPKILALDEPVSALDVSIQAGIVNLLLDLqRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03266   147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218

cbiO

PRK13650

energy-coupling factor transporter ATPase;

1-243

2.81e-32

energy-coupling factor transporter ATPase;

Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 126.00 E-value: 2.81e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTdlNVTFE-TEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELlgl 78
Cdd:PRK13650    1 MSNIIEVK--NLTFKyKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLeAE----SGQIIIDGDLL--- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  79 SDHAMSQIRgRMIGTVFQDPMSALTPVyTIGDQIAEAIEihSREISRADARRRAVELLELVGIAQPERRArafPHELSGG 158
Cdd:PRK13650   72 TEENVWDIR-HKIGMVFQNPDNQFVGA-TVEDDVAFGLE--NKGIPHEEMKERVNEALELVGMQDFKERE---PARLSGG 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSeFADRALVMYAGRPVEIAA 238
Cdd:PRK13650  145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTST 223


                  ....*
gi 1424538268 239 VDELY 243
Cdd:PRK13650  224 PRELF 228

PRK14247

phosphate ABC transporter ATP-binding protein; Provisional

381-601

3.49e-32

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 124.64 E-value: 3.49e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTL---NQILELTkPEA---GSIEILGTDVAVLDAAarrRLRTELQVVFQDPvaSL 454
Cdd:PRK14247   20 DGVNLEIPDNTITALMGPSGSGKSTLLrvfNRLIELY-PEArvsGEVYLDGQDIFKMDVI---ELRRRVQMVFQIP--NP 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 455 DPRLPVYDVIAEPLRANGF--HRHECEERVAELLAVVGL-----DHSDAsryPA-EFSGGQKQRIGIARALALQPKILAL 526
Cdd:PRK14247   94 IPNLSIFENVALGLKLNRLvkSKKELQERVRWALEKAQLwdevkDRLDA---PAgKLSGGQQQRLCIARALAFQPEVLLA 170

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 527 DEPVSALDVSIQAGIVNLLLDLQRRfgLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRR 601
Cdd:PRK14247  171 DEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEK 243

cbiO

PRK13634

cobalt transporter ATP-binding subunit; Provisional

383-595

3.94e-32

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 125.90 E-value: 3.94e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIlGTDV--AVLDAAARRRLRTELQVVFQDPVASLDPRLPV 460
Cdd:PRK13634   26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVitAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLraN-GFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK13634  105 KDICFGPM--NfGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRK 182

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 540 GIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK13634  183 EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238

PhnT2

TIGR03265

putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ...

1-258

4.77e-32

putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]

Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 127.08 E-value: 4.77e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGL-LPEyarvSGSIRLHGKELLGLS 79
Cdd:TIGR03265   1 SSPYLSIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLeRQT----AGTIYQGGRDITRLP 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 DHAmsqirgRMIGTVFQDpmSALTPVYTIGDQIAEAIeiHSREISRADARRRAVELLELVGIAQPERRaraFPHELSGGE 159
Cdd:TIGR03265  73 PQK------RDYGIVFQS--YALFPNLTVADNIAYGL--KNRGMGRAEVAERVAELLDLVGLPGSERK---YPGQLSGGQ 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAV 239
Cdd:TIGR03265 140 QQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTP 219

                         250
                  ....*....|....*....
gi 1424538268 240 DELYRDRRMPYTVGLLGSV 258
Cdd:TIGR03265 220 QEIYRHPATPFVADFVGEV 238

SunT

COG2274

ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ...

11-242

4.84e-32

ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];

Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 131.88 E-value: 4.84e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSdhaMSQIRgRM 90
Cdd:COG2274   478 NVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPT---SGRILIDGIDLRQID---PASLR-RQ 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDPmsaltpvYTIGDQIAEAIEIHSREISRADArrraVELLELVGIAQperRARAFPH-----------ELSGGE 159
Cdd:COG2274   551 IGVVLQDV-------FLFSGTIRENITLGDPDATDEEI----IEAARLAGLHD---FIEALPMgydtvvgeggsNLSGGQ 616

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARdvTGAAVLIITHDLGVVsEFADRALVMYAGRPVEIAAV 239
Cdd:COG2274   617 RQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLL--KGRTVIIIAHRLSTI-RLADRIIVLDKGRIVEDGTH 693


                  ...
gi 1424538268 240 DEL 242
Cdd:COG2274   694 EEL 696

PRK14267

phosphate ABC transporter ATP-binding protein; Provisional

382-606

1.22e-31

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 123.41 E-value: 1.22e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKST---TLNQILELTkPEA---GSIEILGTDVAVLDAAARRrLRTELQVVFQDPvaSLD 455
Cdd:PRK14267   22 GVDLKIPQNGVFALMGPSGCGKSTllrTFNRLLELN-EEArveGEVRLFGRNIYSPDVDPIE-VRREVGMVFQYP--NPF 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 PRLPVYDVIAEPLRANGF--HRHECEERVAELLAVVGLDHSDASR---YPAEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:PRK14267   98 PHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALWDEVKDRlndYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRRFglSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAV 606
Cdd:PRK14267  178 ANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYVTGA 251

cbiO

PRK13650

energy-coupling factor transporter ATPase;

381-581

2.02e-31

energy-coupling factor transporter ATPase;

Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 123.30 E-value: 2.02e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILG---TDVAVLDaaarrrLRTELQVVFQDPvaslDPR 457
Cdd:PRK13650   24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGdllTEENVWD------IRHKIGMVFQNP----DNQ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 L---PVYDVIAEPLRANGFHRHECEERVAELLAVVGLdhSD-ASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:PRK13650   94 FvgaTVEDDVAFGLENKGIPHEEMKERVNEALELVGM--QDfKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSML 171

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1424538268 534 DVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKhLAHRVAVMYRGMI 581
Cdd:PRK13650  172 DPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQV 218

hmuV

PRK13548

hemin importer ATP-binding subunit; Provisional

381-592

2.50e-31

hemin importer ATP-binding subunit; Provisional

Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 122.57 E-value: 2.50e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAA--ARRR--LRTELQVVFqdpvasldP 456
Cdd:PRK13548   19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAelARRRavLPQHSSLSF--------P 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 rLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDASRYPaEFSGGQKQRIGIARALA------LQPKILALDEPV 530
Cdd:PRK13548   91 -FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP-QLSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPT 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:PRK13548  169 SALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230

cbiO

PRK13631

cobalt transporter ATP-binding subunit; Provisional

340-594

2.53e-31

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 124.19 E-value: 2.53e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 340 PPNNAAGGqppVVLRVSDLTKTYRltkgvvvRRRVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAG 419
Cdd:PRK13631   12 VPNPLSDD---IILRVKNLYCVFD-------EKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 420 SIEI----LGTDVAVLDAAAR---------RRLRTELQVVFQDPVASLDPRLPVYDVIAEPLrANGFHRHECEERVAELL 486
Cdd:PRK13631   82 TIQVgdiyIGDKKNNHELITNpyskkiknfKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPV-ALGVKKSEAKKLAKFYL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 487 AVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVV 566
Cdd:PRK13631  161 NKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHV 239

                         250       260
                  ....*....|....*....|....*...
gi 1424538268 567 KHLAHRVAVMYRGMIVEQGESDQVFTNP 594
Cdd:PRK13631  240 LEVADEVIVMDKGKILKTGTPYEIFTDQ 267

MalK

COG3839

ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ...

3-245

2.59e-31

ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];

Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 125.19 E-value: 2.59e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVI-GLLpeyaRVS-GSIRLHGKELLGLSd 80
Cdd:COG3839     2 ASLELENVSKSYG----GVEALKDIDLDIEDGEFLVLLGPSGCGKSTL-LRMIaGLE----DPTsGEILIGGRDVTDLP- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 hamsqIRGRMIGTVFQDPmsALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQ-PERRarafPHELSGGE 159
Cdd:COG3839    72 -----PKDRNIAMVFQSY--ALYPHMTVYENIAFPLKL--RKVPKAEIDRRVREAAELLGLEDlLDRK----PKQLSGGQ 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALD----VTVQAQILDVLRTardvTGAAVLIITHDLgvvSE---FADRALVMYAGR 232
Cdd:COG3839   139 RQRVALGRALVREPKVFLLDEPLSNLDaklrVEMRAEIKRLHRR----LGTTTIYVTHDQ---VEamtLADRIAVMNDGR 211

                         250
                  ....*....|...
gi 1424538268 233 PVEIAAVDELYRD 245
Cdd:COG3839   212 IQQVGTPEELYDR 224

ABC_MetN

TIGR02314

D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding ...

4-275

6.22e-31

D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

Pssm-ID: 131367 [Multi-domain] Cd Length: 343 Bit Score: 123.84 E-value: 6.22e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGLSDHAM 83
Cdd:TIGR02314   1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTL-IRCVNLLERPT--SGSVIVDGQDLTTLSNSEL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRgRMIGTVFQDpmSALTPVYTIGDQIAEAIEIHSReiSRADARRRAVELLELVGIAQperRARAFPHELSGGERQRV 163
Cdd:TIGR02314  78 TKAR-RQIGMIFQH--FNLLSSRTVFGNVALPLELDNT--PKDEIKRKVTELLALVGLGD---KHDSYPSNLSGGQKQRV 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELY 243
Cdd:TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1424538268 244 RDRRMPYTVGLLGSVPRLDAAQG--TRLIPIPGA 275
Cdd:TIGR02314 230 SHPKTPLAQKFIRSTLHLSIPEDyqERLQATPFA 263

MdlB

COG1132

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];

381-585

8.15e-31

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];

Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 127.20 E-value: 8.15e-31

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrLRTELQVVFQDPVasldprlpv 460
Cdd:COG1132   357 KDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLES---LRRQIGVVPQDTF--------- 424

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 ydVIAEPLRAN-GFHRHEC-EERVAELLAVVGLdHSDASRYP-----------AEFSGGQKQRIGIARALALQPKILALD 527
Cdd:COG1132   425 --LFSGTIRENiRYGRPDAtDEEVEEAAKAAQA-HEFIEALPdgydtvvgergVNLSGGQRQRIAIARALLKDPPILILD 501

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 528 EPVSALDV----SIQAGIVNLlldLQRRfglSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQG 585
Cdd:COG1132   502 EATSALDTeteaLIQEALERL---MKGR---TTIVIAHRLSTIRN-ADRILVLDDGRIVEQG 556

lolD

PRK11629

lipoprotein-releasing ABC transporter ATP-binding protein LolD;

4-232

1.56e-30

lipoprotein-releasing ABC transporter ATP-binding protein LolD;

Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 119.54 E-value: 1.56e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEyaRVSGSIRLHGKELLGLSDHAM 83
Cdd:PRK11629    5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTL-LHLLGGLDT--PTSGDVIFNGQPMSKLSSAAK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRMIGTVFQdpMSALTPVYTIGDQIAEAIEIHSREisRADARRRAVELLELVGIaqpERRARAFPHELSGGERQRV 163
Cdd:PRK11629   82 AELRNQKLGFIYQ--FHHLLPDFTALENVAMPLLIGKKK--PAEINSRALEMLAAVGL---EHRANHRPSELSGGERQRV 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFaDRALVMYAGR 232
Cdd:PRK11629  155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGR 222

ntrCD

TIGR01184

nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ...

381-596

1.64e-30

nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]

Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 119.49 E-value: 1.64e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavlDAAARRRLrtelqVVFQDpvASLDPRLPV 460
Cdd:TIGR01184   2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI---TEPGPDRM-----VVFQN--YSLLPWLTV 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEER--VAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:TIGR01184  72 RENIALAVDRVLPDLSKSERRaiVEEHIALVGLTEA-ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV-FTNPQH 596
Cdd:TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVpFPRPRD 209

tauB

PRK11248

taurine ABC transporter ATP-binding subunit;

381-563

1.79e-30

taurine ABC transporter ATP-binding subunit;

Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 120.19 E-value: 1.79e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGtdVAVLDAAARRrlrtelQVVFQDpvASLDPRLPV 460
Cdd:PRK11248   18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG--KPVEGPGAER------GVVFQN--EGLLPWRNV 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDAsRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:PRK11248   88 QDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ 166

                         170       180
                  ....*....|....*....|...
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDL 563
Cdd:PRK11248  167 MQTLLLKLWQETGKQVLLITHDI 189

YnjD

COG4136

ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ...

22-214

3.78e-30

ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];

Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 117.58 E-value: 3.78e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKELLGLSDHAmsqirgRMIGTVFQDPMsa 101
Cdd:COG4136    15 PLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFSASGEVLLNGRRLTALPAEQ------RRIGILFQDDL-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTPVYTIGDQIAEAIeihSREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:COG4136    87 LFPHLSVGENLAFAL---PPTIGRAQRRARVEQALEEAGLAG---FADRDPATLSGGQRARVALLRALLAEPRALLLDEP 160

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1424538268 182 TTALDVTVQAQILDVLRTARDVTGAAVLIITHD 214
Cdd:COG4136   161 FSKLDAALRAQFREFVFEQIRQRGIPALLVTHD 193

ABC_BcrA_bacitracin_resist

cd03268

ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ...

353-585

3.83e-30

ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 117.70 E-value: 3.83e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRltkgvvvrrrvgEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03268     1 LKTNDLTKTYG------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNI 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRrlrtelqvvfqdpVASLDPRLPVYDVIA--EPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQR 510
Cdd:cd03268    69 EALRR-------------IGALIEAPGFYPNLTarENLRLLARLLGIRKKRIDEVLDVVGLKDS-AKKKVKGFSLGMKQR 134

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 511 IGIARALALQPKILALDEPVSALDvsiQAGIV---NLLLDLqRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03268   135 LGIALALLGNPDLLILDEPTNGLD---PDGIKelrELILSL-RDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208

ABC_TM1139_LivF_branched

cd03224

ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ...

5-242

4.02e-30

ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 117.92 E-value: 4.02e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSDHAMS 84
Cdd:cd03224     1 LEVENLNAGYG----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QiRGrmIGTVFQDPM--SALTpvytigdqIAEAIEIHSREISRADARRRAVELLELVGIAQPERRARAfpHELSGGERQR 162
Cdd:cd03224    74 R-AG--IGYVPEGRRifPELT--------VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLA--GTLSGGEQQM 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:cd03224   141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219

ABCC_MsbA

cd03251

ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ...

11-243

5.09e-30

ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 118.10 E-value: 5.09e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEYARV-SGSIRLHGKELlglSDHAMSQIRgR 89
Cdd:cd03251     5 NVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKST----LVNLIPRFYDVdSGRILIDGHDV---RDYTLASLR-R 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDpmsaltpVYTIGDQIAEAIEIHSREISRADARR--RAVELLELV-----GIAQP--ERRARafpheLSGGER 160
Cdd:cd03251    77 QIGLVSQD-------VFLFNDTVAENIAYGRPGATREEVEEaaRAANAHEFImelpeGYDTVigERGVK-----LSGGQR 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVL-RTARDVTgaaVLIITHDLGVVsEFADRALVMYAGRPVEIAAV 239
Cdd:cd03251   145 QRIAIARALLKDPPILILDEATSALDTESERLVQAALeRLMKNRT---TFVIAHRLSTI-ENADRIVVLEDGKIVERGTH 220


                  ....
gi 1424538268 240 DELY 243
Cdd:cd03251   221 EELL 224

ABCC_Hemolysin

cd03252

ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ...

381-590

5.81e-30

ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 117.97 E-value: 5.81e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtELQVVFQ----------DP 450
Cdd:cd03252    19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR---QVGVVLQenvlfnrsirDN 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 451 VASLDPRLPVYDVIaEPLRANGFHRHECEERvaellavVGLDHSDASRyPAEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:cd03252    96 IALADPGMSMERVI-EAAKLAGAHDFISELP-------EGYDTIVGEQ-GAGLSGGQRQRIAIARALIHNPRILIFDEAT 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQV 590
Cdd:cd03252   167 SALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDEL 223

cbiO

PRK13632

cobalt transporter ATP-binding subunit; Provisional

11-236

6.48e-30

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 118.94 E-value: 6.48e-30

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELlglSDHAMSQIRGR 89
Cdd:PRK13632   12 NVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLkPQ----SGEIKIDGITI---SKENLKEIRKK 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 mIGTVFQDPMSALTPVyTIGDQIAEAIEihSREISRADARRRAVELLELVGIAQPERRArafPHELSGGERQRVVIAIAI 169
Cdd:PRK13632   85 -IGIIFQNPDNQFIGA-TVEDDIAFGLE--NKKVPPKKMKDIIDDLAKKVGMEDYLDKE---PQNLSGGQKQRVAIASVL 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 170 ANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEfADRALVM------YAGRPVEI 236
Cdd:PRK13632  158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFsegkliAQGKPKEI 229

CydC

COG4987

ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ...

293-585

1.21e-29

ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 123.72 E-value: 1.21e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 293 CPLAIDECLSAEPDLVRvadgHWAACIRtddvagrSAADVFGVSTQPP----PNNAAGGQPPVVLRVSDLTKTYRltkgv 368
Cdd:COG4987   281 AALALFEALAPLPAAAQ----HLGRVRA-------AARRLNELLDAPPavtePAEPAPAPGGPSLELEDVSFRYP----- 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 369 vvrrrVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrteLQVVFQ 448
Cdd:COG4987   345 -----GAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR---IAVVPQ 416

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 449 DPvasldprlpvyDVIAEPLRAN-GFHRHEC-EERVAELLAVVGLDHsDASRYP-----------AEFSGGQKQRIGIAR 515
Cdd:COG4987   417 RP-----------HLFDTTLRENlRLARPDAtDEELWAALERVGLGD-WLAALPdgldtwlgeggRRLSGGERRRLALAR 484

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 516 ALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLsyLFVSHDLSVVKHlAHRVAVMYRGMIVEQG 585
Cdd:COG4987   485 ALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTV--LLITHRLAGLER-MDRILVLEDGRIVEQG 551

ABC_MTABC3_MDL1_MDL2

cd03249

ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ...

381-589

1.31e-29

ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 117.26 E-value: 1.31e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAaarRRLRTELQVVFQDPVasldprlpV 460
Cdd:cd03249    20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL---RWLRSQIGLVSQEPV--------L 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YD-VIAEPLRANGFHRHECEERVAELLA-----VVGLDH---SDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVS 531
Cdd:cd03249    89 FDgTIAENIRYGKPDATDEEVEEAAKKAnihdfIMSLPDgydTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 532 ALDvSIQAGIVNLLLDlQRRFGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQ 589
Cdd:cd03249   169 ALD-AESEKLVQEALD-RAMKGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDE 223

ABC_ModC_like

cd03299

ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ...

24-243

1.34e-29

Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 117.05 E-value: 1.34e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELLGLSDHAmsqirgRMIGTVFQDpmSAL 102
Cdd:cd03299    15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIkPD----SGKILLNGKDITNLPPEK------RDISYVPQN--YAL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 103 TPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRArafPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
Cdd:cd03299    83 FPHMTVYKNIAYGLKK--RKVDKKEIERKVLEIAEMLGIDHLLNRK---PETLSGGEQQRVAIARALVVNPKILLLDEPF 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 183 TALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELY 243
Cdd:cd03299   158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218

PRK10851

sulfate/thiosulfate ABC transporter ATP-binding protein CysA;

28-263

1.49e-29

sulfate/thiosulfate ABC transporter ATP-binding protein CysA;

Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 120.19 E-value: 1.49e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGLsdHAmsqiRGRMIGTVFQDpmSALTPVYT 107
Cdd:PRK10851   22 SLDIPSGQMVALLGPSGSGKTTL-LRIIAGLEHQT--SGHIRFHGTDVSRL--HA----RDRKVGFVFQH--YALFRHMT 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 108 IGDQIAEAIEIHSRE--ISRADARRRAVELLELVgiaQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTAL 185
Cdd:PRK10851   91 VFDNIAFGLTVLPRRerPNAAAIKAKVTQLLEMV---QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGAL 167

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 186 DVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLGSVPRLDA 263
Cdd:PRK10851  168 DAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEVNRLQG 245

ABC_ModC_molybdenum_transporter

cd03297

ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ...

33-237

1.84e-29

Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 115.86 E-value: 1.84e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  33 PGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGLSDHAMSQIRGRMIGTVFQDpmSALTPVYTIgdqi 112
Cdd:cd03297    22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ--YALFPHLNV---- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 113 AEAIEIHSREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQ 192
Cdd:cd03297    93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR---YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424538268 193 ILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIA 237
Cdd:cd03297   170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214

ABC_drug_resistance_like

cd03264

ABC-type multidrug transport system, ATPase component; The biological function of this family ...

353-585

2.38e-29

ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 115.37 E-value: 2.38e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVvvrrrvgevravDGISFTLEQGrTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvld 432
Cdd:cd03264     1 LQLENLTKRYGKKRAL------------DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL--- 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 aAARRRLRTELQVVFQDPvaSLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGL-DHsdASRYPAEFSGGQKQRI 511
Cdd:cd03264    65 -KQPQKLRRRIGYLPQEF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLgDR--AKKKIGSLSGGMRRRV 139

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 512 GIARALALQPKILALDEPVSALDVSIQAGIVNLLLDL--QRRFGLSylfvSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03264   140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELgeDRIVILS----THIVEDVESLCNQVAVLNKGKLVFEG 211

cbiO

PRK13632

cobalt transporter ATP-binding subunit; Provisional

381-595

3.10e-29

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 117.01 E-value: 3.10e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTtLNQILE-LTKPEAGSIEILGTdvaVLDAAARRRLRTELQVVFQDPvaslDPR-- 457
Cdd:PRK13632   26 KNVSFEINEGEYVAILGHNGSGKST-ISKILTgLLKPQSGEIKIDGI---TISKENLKEIRKKIGIIFQNP----DNQfi 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 -LPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK13632   98 gATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKhLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK13632  177 GKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKE 234

cbiO

PRK13642

energy-coupling factor transporter ATPase;

1-254

3.15e-29

energy-coupling factor transporter ATPase;

Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 117.12 E-value: 3.15e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELlglSD 80
Cdd:PRK13642    1 MNKILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELL---TA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRgRMIGTVFQDPMSALTPVyTIGDQIAEAIEihSREISRADARRRAVELLELVGIAQPERRArafPHELSGGER 160
Cdd:PRK13642   74 ENVWNLR-RKIGMVFQNPDNQFVGA-TVEDDVAFGME--NQGIPREEMIKRVDEALLAVNMLDFKTRE---PARLSGGQK 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVD 240
Cdd:PRK13642  147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPS 225

                         250
                  ....*....|....
gi 1424538268 241 ELYRDRRMPYTVGL 254
Cdd:PRK13642  226 ELFATSEDMVEIGL 239

MdlB

COG1132

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];

11-245

3.91e-29

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];

Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 122.20 E-value: 3.91e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEYARV-SGSIRLHGKELlglSDHAMSQIRgR 89
Cdd:COG1132   344 NVSFSYPG-DRPVLKDISLTIPPGETVALVGPSGSGKST----LVNLLLRFYDPtSGRILIDGVDI---RDLTLESLR-R 414

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDPM--SAltpvyTIGDQIAeaieihsreISRADARRRAVEllELVGIAQPERRARAFPH-----------ELS 156
Cdd:COG1132   415 QIGVVPQDTFlfSG-----TIRENIR---------YGRPDATDEEVE--EAAKAAQAHEFIEALPDgydtvvgergvNLS 478

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARdvTGAAVLIITHDLGVVsEFADRALVMYAGRPVEI 236
Cdd:COG1132   479 GGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLM--KGRTTIVIAHRLSTI-RNADRILVLDDGRIVEQ 555

                         250
                  ....*....|....*
gi 1424538268 237 ------AAVDELYRD 245
Cdd:COG1132   556 gtheelLARGGLYAR 570

glnQ

PRK09493

glutamine ABC transporter ATP-binding protein GlnQ;

31-242

3.95e-29

glutamine ABC transporter ATP-binding protein GlnQ;

Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 115.96 E-value: 3.95e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGlSDHAMSQIRgRMIGTVFQD----P-MSALTPV 105
Cdd:PRK09493   24 IDQGEVVVIIGPSGSGKSTL-LRCINKLEEIT--SGDLIVDGLKVND-PKVDERLIR-QEAGMVFQQfylfPhLTALENV 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 106 yTIGdqiaeaiEIHSREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTAL 185
Cdd:PRK09493   99 -MFG-------PLRVRGASKEEAEKQARELLAKVGLAE---RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 186 DVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:PRK09493  168 DPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223

PRK11264

putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

1-251

6.15e-29

putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 115.62 E-value: 6.15e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVlEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLL--PEYARVS-GSIRLHGKELLG 77
Cdd:PRK11264    1 MSAI-EVKNLVKKFHGQTV----LHGIDLEVKPGEVVAIIGPSGSGKTTL-LRCINLLeqPEAGTIRvGDITIDTARSLS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  78 LSDHAMSQIRgRMIGTVFQDpmSALTPVYTIGDQIAEAIEIHSREiSRADARRRAVELLELVGIAQPERrarAFPHELSG 157
Cdd:PRK11264   75 QQKGLIRQLR-QHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGE-PKEEATARARELLAKVGLAGKET---SYPRRLSG 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVlIITHDLGVVSEFADRALVMYAGRPVEIA 237
Cdd:PRK11264  148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMV-IVTHEMSFARDVADRAIFMDQGRIVEQG 226

                         250
                  ....*....|....
gi 1424538268 238 AVDELYRDRRMPYT 251
Cdd:PRK11264  227 PAKALFADPQQPRT 240

NupO

COG3845

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...

4-255

8.96e-29

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];

Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 120.13 E-value: 8.96e-29

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTfetEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSDHam 83
Cdd:COG3845   257 VLEVENLSVR---DDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRP---PASGSIRLDGEDITGLSPR-- 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 sQIRGRMIGTVFQDPMS-ALTPVYTIGDQIAeaIEIHSRE-------ISRADARRRAVELLELVGI--AQPERRARAfph 153
Cdd:COG3845   329 -ERRRLGVAYIPEDRLGrGLVPDMSVAENLI--LGRYRRPpfsrggfLDRKAIRAFAEELIEEFDVrtPGPDTPARS--- 402

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 154 eLSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRP 233
Cdd:COG3845   403 -LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRD-AGAAVLLISEDLDEILALSDRIAVMYEGRI 480

                         250       260
                  ....*....|....*....|..
gi 1424538268 234 VEIAAVDELYRDRrmpytVGLL 255
Cdd:COG3845   481 VGEVPAAEATREE-----IGLL 497

potA

TIGR01187

spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ...

39-263

1.01e-28

Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 116.82 E-value: 1.01e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  39 IVGESGCGKTTaalaVIGLLPEYARVS-GSIRLHGKELLGLSDHAmsqirgRMIGTVFQDpmSALTPVYTIGDQIAEAIE 117
Cdd:TIGR01187   1 LLGPSGCGKTT----LLRLLAGFEQPDsGSIMLDGEDVTNVPPHL------RHINMVFQS--YALFPHMTVEENVAFGLK 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 118 IhsREISRADARRRAVELLELVgiaQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVL 197
Cdd:TIGR01187  69 M--RKVPRAEIKPRVLEALRLV---QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 198 RTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLGSVPRLDA 263
Cdd:TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEA 209

YnjD

COG4136

ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ...

382-562

1.36e-28

ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];

Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 113.35 E-value: 1.36e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEA---GSIEILGTDVAVLDAAARRrlrteLQVVFQDPVasLDPRL 458
Cdd:COG4136    19 PLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFsasGEVLLNGRRLTALPAEQRR-----IGILFQDDL--LFPHL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 PVYDVIAEPLrANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:COG4136    92 SVGENLAFAL-PPTIGRAQRRARVEQALEEAGLAGF-ADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALR 169

                         170       180
                  ....*....|....*....|....
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHD 562
Cdd:COG4136   170 AQFREFVFEQIRQRGIPALLVTHD 193

ABC_Carb_Monos_I

cd03216

First domain of the ATP-binding cassette component of monosaccharide transport system; This ...

5-234

2.11e-28

First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 111.37 E-value: 2.11e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELLGLSDHAMS 84
Cdd:cd03216     1 LELRGITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QiRGrmIGTVFQdpmsaltpvytigdqiaeaieihsreisradarrravellelvgiaqperrarafpheLSGGERQRVV 164
Cdd:cd03216    74 R-AG--IAMVYQ----------------------------------------------------------LSVGERQMVE 92

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:cd03216    93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

heterocyst_DevA

TIGR02982

ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ...

382-562

2.14e-28

Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 113.19 E-value: 2.14e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQ--DPVASLDPRLP 459
Cdd:TIGR02982  23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELHGASKKQLVQLRRRIGYIFQahNLLGFLTARQN 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VydVIAEPLRANgFHRHECEERVAELLAVVGL-DHSDAsrYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:TIGR02982 103 V--QMALELQPN-LSYQEARERARAMLEAVGLgDHLNY--YPHNLSGGQKQRVAIARALVHHPKLVLADEPTAALDSKSG 177

                         170       180
                  ....*....|....*....|....
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHD 562
Cdd:TIGR02982 178 RDVVELMQKLAKEQGCTILMVTHD 201

COG4559

ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];

5-245

3.53e-28

ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 113.67 E-value: 3.53e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTT--AALAviGLLPEYarvSGSIRLHGKELLGLSDHA 82
Cdd:COG4559     2 LEAENLSVRLGGRTL----LDDVSLTLRPGELTAIIGPNGAGKSTllKLLT--GELTPS---SGEVRLNGRPLAAWSPWE 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSQIRGRMIgtvfQDpmSALTPVYTIGDQIAEAIEIHSReiSRADARRRAVELLELVGIAqpERRARAFPhELSGGERQR 162
Cdd:COG4559    73 LARRRAVLP----QH--SSLAFPFTVEEVVALGRAPHGS--SAAQDRQIVREALALVGLA--HLAGRSYQ-TLSGGEQQR 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIA-------NDPDLLICDEPTTALDVTVQaqiLDVLRTARDVT--GAAVLIITHDLGVVSEFADRALVMYAGRP 233
Cdd:COG4559   142 VQLARVLAqlwepvdGGPRWLFLDEPTSALDLAHQ---HAVLRLARQLArrGGGVVAVLHDLNLAAQYADRILLLHQGRL 218

                         250
                  ....*....|..
gi 1424538268 234 VEIAAVDELYRD 245
Cdd:COG4559   219 VAQGTPEEVLTD 230

ABC_DrrA

cd03265

Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ...

15-242

4.48e-28

Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 112.08 E-value: 4.48e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  15 ETEDI-----EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDhamsQIRgR 89
Cdd:cd03265     2 EVENLvkkygDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDVVREPR----EVR-R 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDPmsaltpvyTIGDQIA--EAIEIHSR--EISRADARRRAVELLELVGIAQ-PERRARAFphelSGGERQRVV 164
Cdd:cd03265    74 RIGIVFQDL--------SVDDELTgwENLYIHARlyGVPGAERRERIDELLDFVGLLEaADRLVKTY----SGGMRRRLE 141

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:cd03265   142 IARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219

ABCC_ATM1_transporter

cd03253

ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ...

11-242

4.90e-28

ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 112.71 E-value: 4.90e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEYARV-SGSIRLHGKELlglSDHAMSQIRgR 89
Cdd:cd03253     5 NVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKST----ILRLLFRFYDVsSGSILIDGQDI---REVTLDSLR-R 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDpmsalTPVY--TIGDQIAEAieihsreisRADARRRAVEllELVGIAQPERRARAFPH-----------ELS 156
Cdd:cd03253    76 AIGVVPQD-----TVLFndTIGYNIRYG---------RPDATDEEVI--EAAKAAQIHDKIMRFPDgydtivgerglKLS 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARdvTGAAVLIITHDLGVVSEfADRALVMYAGRPVEI 236
Cdd:cd03253   140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVER 216


                  ....*.
gi 1424538268 237 AAVDEL 242
Cdd:cd03253   217 GTHEEL 222

CydC

COG4987

ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ...

3-246

5.31e-28

Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 118.72 E-value: 5.31e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFETEDieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHA 82
Cdd:COG4987   332 PSLELEDVSFRYPGAG--RPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQ---SGSITLGGVDLRDLDEDD 406

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSqirgRMIGTVFQDPmsaltpvYTIGDQIAEAIEIHSREISRADARR--RAVELLELVGiAQPER-------RARAfph 153
Cdd:COG4987   407 LR----RRIAVVPQRP-------HLFDTTLRENLRLARPDATDEELWAalERVGLGDWLA-ALPDGldtwlgeGGRR--- 471

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 154 eLSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDLGVVsEFADRALVMYAGRP 233
Cdd:COG4987   472 -LSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGL-ERMDRILVLEDGRI 547

                         250
                  ....*....|...
gi 1424538268 234 VEIAAVDELYRDR 246
Cdd:COG4987   548 VEQGTHEELLAQN 560

YhaQ

COG4152

ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...

4-274

5.47e-28

ABC-type uncharacterized transport system, ATPase component [General function prediction only];

Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 114.05 E-value: 5.47e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELlglSDHAM 83
Cdd:COG4152     1 MLELKGLTKRFG----DKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPD---SGEVLWDGEPL---DPEDR 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQI------RGrmigtvfqdpmsaLTPVYTIGDQIAEAIEIHSreISRADARRRAVELLELVGIAqpERRARAFpHELSG 157
Cdd:COG4152    71 RRIgylpeeRG-------------LYPKMKVGEQLVYLARLKG--LSKAEAKRRADEWLERLGLG--DRANKKV-EELSK 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALD-VTVQAqILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEI 236
Cdd:COG4152   133 GNQQKVQLIAALLHDPELLILDEPFSGLDpVNVEL-LKDVIRELAA-KGTTVIFSSHQMELVEELCDRIVIINKGRKVLS 210

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1424538268 237 AAVDELYRDRRMP-YTVGLLGSVPRLDAAQGTRLIPIPG 274
Cdd:COG4152   211 GSVDEIRRQFGRNtLRLEADGDAGWLRALPGVTVVEEDG 249

ModC

COG4148

ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ...

31-276

7.52e-28

Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 115.20 E-value: 7.52e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELLglsDHAMSQ---IRGRMIGTVFQDPmsALTPVY 106
Cdd:COG4148    22 LPGRGVTALFGPSGSGKTTLLRAIAGLErPD----SGRIRLGGEVLQ---DSARGIflpPHRRRIGYVFQEA--RLFPHL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 107 TIGDQIAEAIeihsreiSRADARRRAV---ELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTT 183
Cdd:COG4148    93 SVRGNLLYGR-------KRAPRAERRIsfdEVVELLGIGHLLDR---RPATLSGGERQRVAIGRALLSSPRLLLMDEPLA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 184 ALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVG-------LLG 256
Cdd:COG4148   163 ALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGgeeagsvLEA 242

                         250       260
                  ....*....|....*....|
gi 1424538268 257 SVPRLDAAQGTRLIPIPGAP 276
Cdd:COG4148   243 TVAAHDPDYGLTRLALGGGR 262

PRK10908

cell division ATP-binding protein FtsE;

382-582

1.33e-27

cell division ATP-binding protein FtsE;

Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 111.12 E-value: 1.33e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDPVASLDPrlPVY 461
Cdd:PRK10908   20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR--TVY 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAEPLRANGFHRHECEERVAELLAVVGLdHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGI 541
Cdd:PRK10908   98 DNVAIPLIIAGASGDDIRRRVSAALDKVGL-LDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGI 176

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1424538268 542 VNLLLDLQrRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIV 582
Cdd:PRK10908  177 LRLFEEFN-RVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216

ABCC_Protease_Secretion

cd03246

ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ...

11-232

2.12e-27

ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.

Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 108.84 E-value: 2.12e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKEL--LGLSDHamsqirG 88
Cdd:cd03246     5 NVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADIsqWDPNEL------G 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  89 RMIGTVFQDpmsaltpVYTIGDQIAEAIeihsreisradarrravellelvgiaqperrarafpheLSGGERQRVVIAIA 168
Cdd:cd03246    76 DHVGYLPQD-------DELFSGSIAENI--------------------------------------LSGGQRQRLGLARA 110

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 169 IANDPDLLICDEPTTALDVTVQAQILDVLRTARdVTGAAVLIITHDLGVVSEfADRALVMYAGR 232
Cdd:cd03246   111 LYGNPRILVLDEPNSHLDVEGERALNQAIAALK-AAGATRIVIAHRPETLAS-ADRILVLEDGR 172

MglA

COG1129

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];

349-590

2.72e-27

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];

Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 115.89 E-value: 2.72e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 349 PPVVLRVSDLTKTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDV 428
Cdd:COG1129     1 AEPLLEMRGISKSFGGVK------------ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPV 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 429 AVLDAAARRRLRteLQVVFQDPvaSLDPRLPVYDVIA---EPLRANGFHRHECEERVAELLAVVGLDHsDASRYPAEFSG 505
Cdd:COG1129    69 RFRSPRDAQAAG--IAIIHQEL--NLVPNLSVAENIFlgrEPRRGGLIDWRAMRRRARELLARLGLDI-DPDTPVGDLSV 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 506 GQKQRIGIARALALQPKILALDEPVSALDvsiqAGIVNLLLDLQRRF---GLSYLFVSHDLSVVKHLAHRVAVMYRGMIV 582
Cdd:COG1129   144 AQQQLVEIARALSRDARVLILDEPTASLT----EREVERLFRIIRRLkaqGVAIIYISHRLDEVFEIADRVTVLRDGRLV 219


                  ....*...
gi 1424538268 583 EQGESDQV 590
Cdd:COG1129   220 GTGPVAEL 227

tauB

PRK11248

taurine ABC transporter ATP-binding subunit;

22-215

3.12e-27

taurine ABC transporter ATP-binding subunit;

Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 110.94 E-value: 3.12e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGlsdhamsqiRGRMIGTVFQDpmSA 101
Cdd:PRK11248   15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEG---------PGAERGVVFQN--EG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:PRK11248   81 LLPWRNVQDNVAFGLQL--AGVEKMQRLEIAHQMLKKVGLEGAEKR---YIWQLSGGQRQRVGIARALAANPQLLLLDEP 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1424538268 182 TTALDVTVQAQILDVLRTARDVTGAAVLIITHDL 215
Cdd:PRK11248  156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189

PRK13657

glucan ABC transporter ATP-binding protein/ permease;

6-242

3.15e-27

glucan ABC transporter ATP-binding protein/ permease;

Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 116.60 E-value: 3.15e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   6 EVTDLNVTFETeDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAalavIGLLpeyARV----SGSIRLHGKELLGLSdh 81
Cdd:PRK13657  334 AVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTL----INLL---QRVfdpqSGRILIDGTDIRTVT-- 403

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  82 aMSQIRgRMIGTVFQDPMSAltpVYTIGDQIaeaieihsrEISRADARRraVELLELVGIAQP----ERRARAFP----- 152
Cdd:PRK13657  404 -RASLR-RNIAVVFQDAGLF---NRSIEDNI---------RVGRPDATD--EEMRAAAERAQAhdfiERKPDGYDtvvge 467

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 153 --HELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARdvTGAAVLIITHDLGVVSEfADRALVMYA 230
Cdd:PRK13657  468 rgRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVRN-ADRILVFDN 544

                         250
                  ....*....|..
gi 1424538268 231 GRPVEIAAVDEL 242
Cdd:PRK13657  545 GRVVESGSFDEL 556

met_CoM_red_A2

TIGR03269

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ...

21-245

3.30e-27

Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 115.67 E-value: 3.30e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLH-GKELLGLSDHAMSQiRGRM---IGTVFQ 96
Cdd:TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVNVRvGDEWVDMTKPGPDG-RGRAkryIGILHQ 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  97 DpmSALTPVYTIGDQIAEAIEIhsrEISRADARRRAVELLELVGIAqpERRARA----FPHELSGGERQRVVIAIAIAND 172
Cdd:TIGR03269 373 E--YDLYPHRTVLDNLTEAIGL---ELPDELARMKAVITLKMVGFD--EEKAEEildkYPDELSEGERHRVALAQVLIKE 445

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 173 PDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRD 245
Cdd:TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518

cbiO

PRK13646

energy-coupling factor transporter ATPase;

383-607

3.54e-27

energy-coupling factor transporter ATPase;

Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 111.41 E-value: 3.54e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIlgTDVAVLDAAAR---RRLRTELQVVFQDPVASLDPRLP 459
Cdd:PRK13646   26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV--DDITITHKTKDkyiRPVRKRIGMVFQFPESQLFEDTV 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIAEPlRANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK13646  104 EREIIFGP-KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 540 GIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTnpQHEYTRRLLAAVP 607
Cdd:PRK13646  183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK--DKKKLADWHIGLP 248

ABC_YhbG

cd03218

ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ...

353-594

4.49e-27

ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 109.55 E-value: 4.49e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03218     1 LRAENLSKRYGKRK------------VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLrtELQVVFQDpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIG 512
Cdd:cd03218    69 MHKRARL--GIGYLPQE--ASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-RKSKASSLSGGERRRVE 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 513 IARALALQPKILALDEPVSALD---VS-IQAGIVNLlldlqRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESD 588
Cdd:cd03218   144 IARALATNPKFLLLDEPFAGVDpiaVQdIQKIIKIL-----KDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPE 218


                  ....*.
gi 1424538268 589 QVFTNP 594
Cdd:cd03218   219 EIAANE 224

cbiO

PRK13645

energy-coupling factor transporter ATPase;

381-593

4.59e-27

energy-coupling factor transporter ATPase;

Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 111.25 E-value: 4.59e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIeILGtDVAVLDAAAR----RRLRTELQVVFQDPVASLDP 456
Cdd:PRK13645   28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVG-DYAIPANLKKikevKRLRKEIGLVFQFPEYQLFQ 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RLPVYDVIAEPLRAnGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK13645  106 ETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PRK13645  185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241

ABCC_Glucan_exporter_like

cd03254

ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ...

381-591

5.92e-27

ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 109.24 E-value: 5.92e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDaaaRRRLRTELQVVFQDPVasLDPrlpv 460
Cdd:cd03254    20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS---RKSLRSMIGVVLQDTF--LFS---- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 yDVIAEPLRANgfHRHECEERVAELLAVVGLDH------SDASRYPAE----FSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:cd03254    91 -GTIMENIRLG--RPNATDEEVIEAAKEAGAHDfimklpNGYDTVLGEnggnLSQGERQLLAIARAMLRDPKILILDEAT 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVF 591
Cdd:cd03254   168 SNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELL 225

LivF

COG0410

ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ...

2-248

6.61e-27

ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];

Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 109.30 E-value: 6.61e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   2 TAVLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSDH 81
Cdd:COG0410     1 MPMLEVENLHAGYG----GIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLP---PRSGSIRFDGEDITGLPPH 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  82 AMSQiRGrmIGTVFQDPM--SALTpvytigdqIAEAIEIHSREISRADARRRAVE-LLELVGIAQPERRARAfpHELSGG 158
Cdd:COG0410    74 RIAR-LG--IGYVPEGRRifPSLT--------VEENLLLGAYARRDRAEVRADLErVYELFPRLKERRRQRA--GTLSGG 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAA 238
Cdd:COG0410   141 EQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNR-EGVTILLVEQNARFALEIADRAYVLERGRIVLEGT 219

                         250
                  ....*....|
gi 1424538268 239 VDELYRDRRM 248
Cdd:COG0410   220 AAELLADPEV 229

hmuV

PRK13548

hemin importer ATP-binding subunit; Provisional

3-234

6.67e-27

hemin importer ATP-binding subunit; Provisional

Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 109.86 E-value: 6.67e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTT--AALAviGLLPEYarvSGSIRLHGKELLGLSD 80
Cdd:PRK13548    1 AMLEARNLSVRLGGRTL----LDDVSLTLRPGEVVAILGPNGAGKSTllRALS--GELSPD---SGEVRLNGRPLADWSP 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGRMigtvfqdPM-SALTPVYTIGDQIAEAIEIHSReiSRADARRRAVELLELVGIAqpERRARAFPhELSGGE 159
Cdd:PRK13548   72 AELARRRAVL-------PQhSSLSFPFTVEEVVAMGRAPHGL--SRAEDDALVAAALAQVDLA--HLAGRDYP-QLSGGE 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIA------NDPDLLICDEPTTALDVtvqAQILDVLRTARDVT---GAAVLIITHDLGVVSEFADRALVMYA 230
Cdd:PRK13548  140 QQRVQLARVLAqlwepdGPPRWLLLDEPTSALDL---AHQHHVLRLARQLAherGLAVIVVLHDLNLAARYADRIVLLHQ 216


                  ....
gi 1424538268 231 GRPV 234
Cdd:PRK13548  217 GRLV 220

ABCC_MsbA

cd03251

ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ...

381-589

7.26e-27

Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 109.24 E-value: 7.26e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrLRTELQVVFQDPVAsldprlpV 460
Cdd:cd03251    19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAS---LRRQIGLVSQDVFL-------F 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLR--ANGFHRHECEE--RVAELLAVV-----GLDHSDASRyPAEFSGGQKQRIGIARALALQPKILALDEPVS 531
Cdd:cd03251    89 NDTVAENIAygRPGATREEVEEaaRAANAHEFImelpeGYDTVIGER-GVKLSGGQRQRIAIARALLKDPPILILDEATS 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 532 ALDVS----IQAGIVNLlldLQRRFGLSylfVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQ 589
Cdd:cd03251   168 ALDTEserlVQAALERL---MKNRTTFV---IAHRLSTIEN-ADRIVVLEDGKIVERGTHEE 222

PRK15112

peptide ABC transporter ATP-binding protein SapF;

1-235

9.04e-27

peptide ABC transporter ATP-binding protein SapF;

Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 109.88 E-value: 9.04e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETED-----IEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKEL 75
Cdd:PRK15112    1 VETLLEVRNLSKTFRYRTgwfrrQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  76 lGLSDHAMSQIRGRMIgtvFQDPMSALTPVYTIGdQIAEAIEIHSREISRADARRRAVELLELVGIaQPERrARAFPHEL 155
Cdd:PRK15112   78 -HFGDYSYRSQRIRMI---FQDPSTSLNPRQRIS-QILDFPLRLNTDLEPEQREKQIIETLRQVGL-LPDH-ASYYPHML 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 156 SGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:PRK15112  151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230

ABC_subfamily_A

cd03263

ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ...

5-232

9.07e-27

Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 108.36 E-value: 9.07e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLglSDhaMS 84
Cdd:cd03263     1 LQIRNLTKTYKKGT--KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSIR--TD--RK 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRgRMIGTVFQDPM--SALTPvytigdqiAEAIEIHSR--EISRADARRRAVELLELVGIAQPE-RRARafphELSGGE 159
Cdd:cd03263    72 AAR-QSLGYCPQFDAlfDELTV--------REHLRFYARlkGLPKSEIKEEVELLLRVLGLTDKAnKRAR----TLSGGM 138

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARdvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03263   139 KRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR--KGRSIILTTHSMDEAEALCDRIAIMSDGK 209

CcmA

COG4133

ABC-type transport system involved in cytochrome c biogenesis, ATPase component ...

381-562

1.07e-26

ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 107.95 E-value: 1.07e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrtelqvvfqdpvASLDPRLPV 460
Cdd:COG4133    19 SGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRL------------AYLGHADGL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVI--AEPLR--ANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:COG4133    87 KPELtvRENLRfwAALYGLRADREAIDEALEAVGLAGL-ADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAA 165

                         170       180
                  ....*....|....*....|....*.
gi 1424538268 537 IQAGIVNLLLDLQRRfGLSYLFVSHD 562
Cdd:COG4133   166 GVALLAELIAAHLAR-GGAVLLTTHQ 190

modC_ABC

TIGR02142

molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ...

33-275

1.07e-26

Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 111.74 E-value: 1.07e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  33 PG-EVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGLSDHAMSQIRGRMIGTVFQDpmSALTPVYTIGDQ 111
Cdd:TIGR02142  21 PGqGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE--ARLFPHLSVRGN 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 112 IaeaieIHSREISRADARR-RAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQ 190
Cdd:TIGR02142  96 L-----RYGMKRARPSERRiSFERVIELLGIGHLLGR---LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRK 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 191 AQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPY------TVGLLGSVPRLDAA 264
Cdd:TIGR02142 168 YEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWlaredqGSLIEGVVAEHDQH 247

                         250
                  ....*....|.
gi 1424538268 265 QGTRLIPIPGA 275
Cdd:TIGR02142 248 YGLTALRLGGG 258

cbiO

PRK13640

energy-coupling factor transporter ATPase;

7-254

1.27e-26

energy-coupling factor transporter ATPase;

Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 109.89 E-value: 1.27e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   7 VTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKELlglSDHAMSQI 86
Cdd:PRK13640    6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL---TAKTVWDI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  87 RGRmIGTVFQDPMSALTPVyTIGDQIAEAIEihSREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIA 166
Cdd:PRK13640   83 REK-VGIVFQNPDNQFVGA-TVGDDVAFGLE--NRAVPRPEMIKIVRDVLADVGMLD---YIDSEPANLSGGQKQRVAIA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 167 IAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGvVSEFADRALVMYAGRPVEIAAVDELYRDR 246
Cdd:PRK13640  156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EANMADQVLVLDDGKLLAQGSPVEIFSKV 234


                  ....*...
gi 1424538268 247 RMPYTVGL 254
Cdd:PRK13640  235 EMLKEIGL 242

potG

PRK11607

putrescine ABC transporter ATP-binding subunit PotG;

1-258

1.28e-26

putrescine ABC transporter ATP-binding subunit PotG;

Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 111.85 E-value: 1.28e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEdievPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSD 80
Cdd:PRK11607   16 LTPLLEIRNLTKSFDGQ----HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP---TAGQIMLDGVDLSHVPP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAmsqirgRMIGTVFQDpmSALTPVYTIGDQIAEAIEihSREISRADARRRAVELLELVGIAQPERRArafPHELSGGER 160
Cdd:PRK11607   89 YQ------RPINMMFQS--YALFPHMTVEQNIAFGLK--QDKLPKAEIASRVNEMLGLVHMQEFAKRK---PHQLSGGQR 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTV----QAQILDVLrtarDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEI 236
Cdd:PRK11607  156 QRVALARSLAKRPKLLLLDEPMGALDKKLrdrmQLEVVDIL----ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231

                         250       260
                  ....*....|....*....|..
gi 1424538268 237 AAVDELYRDRRMPYTVGLLGSV 258
Cdd:PRK11607  232 GEPEEIYEHPTTRYSAEFIGSV 253

ABC_MalK_N

cd03301

The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ...

5-237

1.55e-26

Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 107.73 E-value: 1.55e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKellglsDHAMS 84
Cdd:cd03301     1 VELENVTKRFG----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL---EEPTSGRIYIGGR------DVTDL 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRGRMIGTVFQDpmSALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVV 164
Cdd:cd03301    68 PPKDRDIAMVFQN--YALYPHMTVYDNIAFGLKL--RKVPKDEIDERVREVAELLQIEHLLDR---KPKQLSGGQRQRVA 140

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIA 237
Cdd:cd03301   141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213

PstB

COG1117

ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ...

1-242

1.76e-26

ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 108.59 E-value: 1.76e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalavigLL----------PEyARVSGSIRL 70
Cdd:COG1117     8 LEPKIEVRNLNVYYG----DKQALKDINLDIPENKVTALIGPSGCGKST-------LLrclnrmndliPG-ARVEGEILL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  71 HGKELLGlSDHAMSQIRgRMIGTVFQDP----MSaltpvytIGDQIAEAIEIHSReisradaRRRAvELLELVgiaqpE- 145
Cdd:COG1117    76 DGEDIYD-PDVDVVELR-RRVGMVFQKPnpfpKS-------IYDNVAYGLRLHGI-------KSKS-ELDEIV-----Ee 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 146 --RRA----------RAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT-ARDVTgaaVLIIT 212
Cdd:COG1117   134 slRKAalwdevkdrlKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILElKKDYT---IVIVT 210

                         250       260       270
                  ....*....|....*....|....*....|
gi 1424538268 213 HDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:COG1117   211 HNMQQAARVSDYTAFFYLGELVEFGPTEQI 240

cbiO

PRK13652

cobalt transporter ATP-binding subunit; Provisional

381-594

2.66e-26

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 108.74 E-value: 2.66e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvldAAARRRLRTELQVVFQDPVASLDPRLPV 460
Cdd:PRK13652   21 NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT---KENIREVRKFVGLVFQNPDDQIFSPTVE 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRAnGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:PRK13652   98 QDIAFGPINL-GLDEETVAHRVSSALHMLGLEEL-RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNP 594
Cdd:PRK13652  176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229

ArtP

COG4161

ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];

33-235

3.09e-26

ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];

Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 107.41 E-value: 3.09e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  33 PGEVLAIVGESGCGKTTAaLAVIGLLpEYARvSGSIRLHGKEL---LGLSDHAMSQIRgRMIGTVFQDpmSALTPVYTIG 109
Cdd:COG4161    27 SGETLVLLGPSGAGKSSL-LRVLNLL-ETPD-SGQLNIAGHQFdfsQKPSEKAIRLLR-QKVGMVFQQ--YNLWPHLTVM 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 110 DQIAEAiEIHSREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTV 189
Cdd:COG4161   101 ENLIEA-PCKVLGLSKEQAREKAMKLLARLRLTD---KADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1424538268 190 QAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:COG4161   177 TAQVVEIIRELSQ-TGITQVIVTHEVEFARKVASQVVYMEKGRIIE 221

CydD

TIGR02857

thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ...

5-228

3.78e-26

thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 112.77 E-value: 3.78e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDievPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELlglsDHAMS 84
Cdd:TIGR02857 322 LEFSGVSVAYPGRR---PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPL----ADADA 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRGRMIGTVFQDPmsaltpvYTIGDQIAEAIEIHSREISRADARR--RAVELLELV-----GIAQPERRArafPHELSG 157
Cdd:TIGR02857 392 DSWRDQIAWVPQHP-------FLFAGTIAENIRLARPDASDAEIREalERAGLDEFVaalpqGLDTPIGEG---GAGLSG 461

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDLGVVsEFADRALVM 228
Cdd:TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALA-ALADRIVVL 529

TagH

COG1134

ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ...

352-590

3.93e-26

ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];

Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 107.47 E-value: 3.93e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKGVVVRRRVGEVRAV----------DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSI 421
Cdd:COG1134     4 MIEVENVSKSYRLYHEPSRSLKELLLRRRrtrreefwalKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 422 EILGTDVAVLdaaarrrlrtELQVVFqdpvaslDPRLPVYD---VIAeplRANGFHRHECEERVAELLAVVGL-DHSDA- 496
Cdd:COG1134    84 EVNGRVSALL----------ELGAGF-------HPELTGREniyLNG---RLLGLSRKEIDEKFDEIVEFAELgDFIDQp 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 497 -SRYpaefSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAV 575
Cdd:COG1134   144 vKTY----SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIW 218

                         250
                  ....*....|....*
gi 1424538268 576 MYRGMIVEQGESDQV 590
Cdd:COG1134   219 LEKGRLVMDGDPEEV 233

PRK13651

cobalt transporter ATP-binding subunit; Provisional

381-593

4.94e-26

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 108.63 E-value: 4.94e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAAR---------------------RRL 439
Cdd:PRK13651   24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEkekvleklviqktrfkkikkiKEI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 440 RTELQVVFQDPVASLDPRLPVYDVIAEPlRANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALAL 519
Cdd:PRK13651  104 RRRVGVVFQFAEYQLFEQTIEKDIIFGP-VSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM 182

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 520 QPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PRK13651  183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255

cbiO

PRK13647

cobalt transporter ATP-binding subunit; Provisional

381-585

5.63e-26

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 107.90 E-value: 5.63e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavlDAAARRRLRTELQVVFQDPvaslDPRL-- 458
Cdd:PRK13647   22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV---NAENEKWVRSKVGLVFQDP----DDQVfs 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 -PVYDVIAEPLRANGFHRHECEERVAELLAVVGL-DHSDasRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK13647   95 sTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMwDFRD--KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1424538268 537 IQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:PRK13647  173 GQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220

ABC_TM1139_LivF_branched

cd03224

ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ...

381-590

7.14e-26

Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 105.98 E-value: 7.14e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAARRRLRTELQVVFQDPvaSLDPRLPV 460
Cdd:cd03224    17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT--GLPPHERARAGIGYVPEGR--RIFPELTV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YdviaEPLRANGFHRHEC--EERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:cd03224    93 E----ENLLLGAYARRRAkrKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 539 AGIVNLLLDLqRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:cd03224   169 EEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219

cbiO

PRK13640

energy-coupling factor transporter ATPase;

381-595

7.33e-26

energy-coupling factor transporter ATPase;

Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 107.58 E-value: 7.33e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTT---LNQILELTKPEAGSIEILGTDvavLDAAARRRLRTELQVVFQDPvaslDPR 457
Cdd:PRK13640   24 NDISFSIPRGSWTALIGHNGSGKSTIsklINGLLLPDDNPNSKITVDGIT---LTAKTVWDIREKVGIVFQNP----DNQ 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 L---PVYDVIAEPLRANGFHRHECEERVAELLAVVG-LDHSDASryPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:PRK13640   97 FvgaTVGDDVAFGLENRAVPRPEMIKIVRDVLADVGmLDYIDSE--PANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 534 DVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK13640  175 DPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSKVE 235

cbiO

PRK13642

energy-coupling factor transporter ATPase;

381-595

8.23e-26

energy-coupling factor transporter ATPase;

Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 107.49 E-value: 8.23e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDvavLDAAARRRLRTELQVVFQDPVASLdPRLPV 460
Cdd:PRK13642   24 NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL---LTAENVWNLRRKIGMVFQNPDNQF-VGATV 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAE-LLAVVGLDHSdaSRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK13642  100 EDDVAFGMENQGIPREEMIKRVDEaLLAVNMLDFK--TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 540 GIVNLLLDLQRRFGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK13642  178 EIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSE 232

artP

PRK11124

arginine transporter ATP-binding subunit; Provisional

31-235

9.18e-26

arginine transporter ATP-binding subunit; Provisional

Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 106.25 E-value: 9.18e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAaLAVIGLLpEYARvSGSIRLHGKEL---LGLSDHAMSQIRgRMIGTVFQDpmSALTPVYT 107
Cdd:PRK11124   25 CPQGETLVLLGPSGAGKSSL-LRVLNLL-EMPR-SGTLNIAGNHFdfsKTPSDKAIRELR-RNVGMVFQQ--YNLWPHLT 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 108 IGDQIAEAiEIHSREISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDV 187
Cdd:PRK11124   99 VQQNLIEA-PCRVLGLSKDQALARAEKLLERLRLKP---YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1424538268 188 TVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:PRK11124  175 EITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVE 221

CcmA

COG4133

ABC-type transport system involved in cytochrome c biogenesis, ATPase component ...

3-214

1.19e-25

ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 104.87 E-value: 1.19e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTT--AALAviGLLPeyaRVSGSIRLHGKELlglsD 80
Cdd:COG4133     1 MMLEAENLSCRRG----ERLLFSGLSFTLAAGEALALTGPNGSGKTTllRILA--GLLP---PSAGEVLWNGEPI----R 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGRmIGTVFQDPM--SALTPvytigdqiAEAIEIHSREISRADARRRAVELLELVGIAqpeRRARAFPHELSGG 158
Cdd:COG4133    68 DAREDYRRR-LAYLGHADGlkPELTV--------RENLRFWAALYGLRADREAIDEALEAVGLA---GLADLPVRQLSAG 135

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHD 214
Cdd:COG4133   136 QKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLA-RGGAVLLTTHQ 190

ThiQ

COG3840

ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];

28-256

1.25e-25

ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];

Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 105.61 E-value: 1.25e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTTAaLAVI-GLLPEYarvSGSIRLHGKELLGLSDHAmsqirgRMIGTVFQDpmSALTPVY 106
Cdd:COG3840    19 DLTIAAGERVAILGPSGAGKSTL-LNLIaGFLPPD---SGRILWNGQDLTALPPAE------RPVSMLFQE--NNLFPHL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 107 TIGDQIAeaIEIHSREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALD 186
Cdd:COG3840    87 TVAQNIG--LGLRPGLKLTAEQRAQVEQALERVGLAGLLDR---LPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALD 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 187 VTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLG 256
Cdd:COG3840   162 PALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYLG 231

ABC_putative_ATPase

cd03269

ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ...

353-585

1.99e-25

ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 104.28 E-value: 1.99e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGtdvAVLD 432
Cdd:cd03269     1 LEVENVTKRFGRVT------------ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG---KPLD 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRR---LRTElqvvfqdpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQ 509
Cdd:cd03269    66 IAARNRigyLPEE---------RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-ANKRVEELSKGNQQ 135

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 510 RIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03269   136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210

YhaQ

COG4152

ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...

381-590

2.28e-25

ABC-type uncharacterized transport system, ATPase component [General function prediction only];

Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 106.35 E-value: 2.28e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDvavLDAAARRRL------RtelqvvfqdpvaSL 454
Cdd:COG4152    18 DDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEP---LDPEDRRRIgylpeeR------------GL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 455 DPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDASRYpAEFSGGQKQRIGIARALALQPKILALDEPVSALD 534
Cdd:COG4152    83 YPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKV-EELSKGNQQKVQLIAALLHDPELLILDEPFSGLD 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 535 -VSIQAgIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:COG4152   162 pVNVEL-LKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI 216

ABC_putative_ATPase

cd03269

ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ...

5-234

2.51e-25

Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 103.90 E-value: 2.51e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAMS 84
Cdd:cd03269     1 LEVENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRIG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QI---RGrmigtvfqdpmsaLTPVYTIGDQIAEAIEIHSreISRADARRRAVELLELVGIAQ-PERRARafphELSGGER 160
Cdd:cd03269    74 YLpeeRG-------------LYPKMKVIDQLVYLAQLKG--LKKEEARRRIDEWLERLELSEyANKRVE----ELSKGNQ 134

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:cd03269   135 QKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAV 207

cbiO

PRK13639

cobalt transporter ATP-binding subunit; Provisional

4-245

2.59e-25

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 105.93 E-value: 2.59e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFE--TEdievpAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELlGLSD 80
Cdd:PRK13639    1 ILETRDLKYSYPdgTE-----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILkPT----SGEVLIKGEPI-KYDK 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRgRMIGTVFQDPMSAL-TPvyTIGDQIAeaIEIHSREISRADARRRAVELLELVGIAQPERRArafPHELSGGE 159
Cdd:PRK13639   71 KSLLEVR-KTVGIVFQNPDDQLfAP--TVEEDVA--FGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP---PHHLSGGQ 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAV 239
Cdd:PRK13639  143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221


                  ....*.
gi 1424538268 240 DELYRD 245
Cdd:PRK13639  222 KEVFSD 227

PRK14258

phosphate ABC transporter ATP-binding protein; Provisional

381-600

2.63e-25

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 105.50 E-value: 2.63e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKST---TLNQILEL---TKPEaGSIEILGTDVAvldaaARR----RLRTELQVVFQDP 450
Cdd:PRK14258   24 EGVSMEIYQSKVTAIIGPSGCGKSTflkCLNRMNELeseVRVE-GRVEFFNQNIY-----ERRvnlnRLRRQVSMVHPKP 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 451 vaSLDPrLPVYDVIAEPLRANGFH-RHECEERVAELLAVVGL-DH--SDASRYPAEFSGGQKQRIGIARALALQPKILAL 526
Cdd:PRK14258   98 --NLFP-MSVYDNVAYGVKIVGWRpKLEIDDIVESALKDADLwDEikHKIHKSALDLSGGQQQRLCIARALAVKPKVLLM 174

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 527 DEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYR-----GMIVEQGESDQVFTNPQHEYTR 600
Cdd:PRK14258  175 DEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKIFNSPHDSRTR 253

MsbA_lipidA

TIGR02203

lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ...

11-235

2.72e-25

lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]

Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 110.19 E-value: 2.72e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPE-YARVSGSIRLHGKELlglSDHAMSQIRgR 89
Cdd:TIGR02203 335 NVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKST----LVNLIPRfYEPDSGQILLDGHDL---ADYTLASLR-R 406

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDpmsaltpVYTIGDQIAEAIEI-HSREISRADARR--RAVELLELV-----GIAQP--ERRARafpheLSGGE 159
Cdd:TIGR02203 407 QVALVSQD-------VVLFNDTIANNIAYgRTEQADRAEIERalAAAYAQDFVdklplGLDTPigENGVL-----LSGGQ 474

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRtaRDVTGAAVLIITHDLGVVsEFADRALVMYAGRPVE 235
Cdd:TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALE--RLMQGRTTLVIAHRLSTI-EKADRIVVMDDGRIVE 547

PRK10584

putative ABC transporter ATP-binding protein YbbA; Provisional

382-562

2.85e-25

putative ABC transporter ATP-binding protein YbbA; Provisional

Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 104.48 E-value: 2.85e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTE-LQVVFQDPVasLDPRLPV 460
Cdd:PRK10584   28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKhVGFVFQSFM--LIPTLNA 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGL----DHsdasrYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK10584  106 LENVELPALLRGESSRQSRNGAKALLEQLGLgkrlDH-----LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180

                         170       180
                  ....*....|....*....|....*.
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHD 562
Cdd:PRK10584  181 TGDKIADLLFSLNREHGTTLILVTHD 206

ABC_Carb_Monos_I

cd03216

First domain of the ATP-binding cassette component of monosaccharide transport system; This ...

353-582

3.24e-25

Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 102.12 E-value: 3.24e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLD 432
Cdd:cd03216     1 LELRGITKRFGGVK------------ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 433 AAARRRLRteLQVVFQdpvasldprlpvydviaeplrangfhrheceervaellavvgldhsdasrypaeFSGGQKQRIG 512
Cdd:cd03216    69 PRDARRAG--IAMVYQ------------------------------------------------------LSVGERQMVE 92

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 513 IARALALQPKILALDEPVSALDVSiqagIVNLLLDLQRRF---GLSYLFVSHDLSVVKHLAHRVAVMYRGMIV 582
Cdd:cd03216    93 IARALARNARLLILDEPTAALTPA----EVERLFKVIRRLraqGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

PRK10908

cell division ATP-binding protein FtsE;

23-232

4.96e-25

cell division ATP-binding protein FtsE;

Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 103.42 E-value: 4.96e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  23 AVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGLSDHAMSQIRgRMIGTVFQDpmSAL 102
Cdd:PRK10908   17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREVPFLR-RQIGMIFQD--HHL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 103 TPVYTIGDQIAEAIEIHSreISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
Cdd:PRK10908   91 LMDRTVYDNVAIPLIIAG--ASGDDIRRRVSAALDKVGLLD---KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1424538268 183 TALDVTVQAQILDVLRTARDVtGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:PRK10908  166 GNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGH 214

urea_trans_UrtE

TIGR03410

urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ...

382-604

1.14e-24

urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]

Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 102.60 E-value: 1.14e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLdaAARRRLRTELQVVFQDpvASLDPRLPVY 461
Cdd:TIGR03410  18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL--PPHERARAGIAYVPQG--REIFPRLTVE 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAEPLRANGFHRHECEERVAELLAVVgldHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGI 541
Cdd:TIGR03410  94 ENLLTGLAALPRRSRKIPDEIYELFPVL---KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI 170

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 542 VNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVftnpQHEYTRRLLA 604
Cdd:TIGR03410 171 GRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL----DEDKVRRYLA 229

ABCC_Glucan_exporter_like

cd03254

ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ...

11-242

1.14e-24

Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 102.69 E-value: 1.14e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEvPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEYARVS-GSIRLHGKELLGLSdhaMSQIRgR 89
Cdd:cd03254     7 NVNFSYDEKK-PVLKDINFSIKPGETVAIVGPTGAGKTT----LINLLMRFYDPQkGQILIDGIDIRDIS---RKSLR-S 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDPmsaltpvYTIGDQIAEAIEIhSREISRADarrRAVELLELVGIAQ-PERRARAFPHE-------LSGGERQ 161
Cdd:cd03254    78 MIGVVLQDT-------FLFSGTIMENIRL-GRPNATDE---EVIEAAKEAGAHDfIMKLPNGYDTVlgenggnLSQGERQ 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDLGVVsEFADRALVMYAGRPVEIAAVDE 241
Cdd:cd03254   147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTI-KNADKILVLDDGKIIEEGTHDE 223


                  .
gi 1424538268 242 L 242
Cdd:cd03254   224 L 224

galliderm_ABC

TIGR03740

gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ...

381-589

1.27e-24

gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 102.48 E-value: 1.27e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvldaaaRRRLRTelqvvfqdpVASLDPRLPV 460
Cdd:TIGR03740  17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT------RKDLHK---------IGSLIESPPL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIA--EPLRANGFHRHECEERVAELLAVVGLDHSDASRyPAEFSGGQKQRIGIARALALQPKILALDEPVSALD-VSI 537
Cdd:TIGR03740  82 YENLTarENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDpIGI 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 538 QAgivnlLLDLQRRF---GLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQ 589
Cdd:TIGR03740 161 QE-----LRELIRSFpeqGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210

type_I_sec_HlyB

TIGR01846

type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ...

381-590

1.41e-24

type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]

Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 108.68 E-value: 1.41e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtELQVVFQ----------DP 450
Cdd:TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR---QMGVVLQenvlfsrsirDN 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 451 VASLDPRLPVYDVIAEPLRANGfhrHECEERVAEllavvGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:TIGR01846 551 IALCNPGAPFEHVIHAAKLAGA---HDFISELPQ-----GYN-TEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQV 590
Cdd:TIGR01846 622 SALDYESEALIMRNMREICR--GRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEEL 678

ABC_Carb_Monos_II

cd03215

Second domain of the ATP-binding cassette component of monosaccharide transport system; This ...

3-232

1.67e-24

Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 100.58 E-value: 1.67e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTfetedievPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSDHA 82
Cdd:cd03215     3 PVLEVRGLSVK--------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MsqiRGRMIGTVFQDPMS-ALTPVYTIGDQIAeaieihsreisradarrravellelvgiaqperraraFPHELSGGERQ 161
Cdd:cd03215    72 A---IRAGIAYVPEDRKReGLVLDLSVAENIA-------------------------------------LSSLLSGGNQQ 111

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03215   112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEGR 181

ABC_KpsT_Wzt

cd03220

ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ...

353-585

1.86e-24

ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.

Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 101.84 E-value: 1.86e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVVVRRRVGEVRAV----------DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIE 422
Cdd:cd03220     1 IELENVSKSYPTYKGGSSSLKKLGILGRkgevgefwalKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 423 ILGTDVAVLDAAarrrlrtelqvvfqdpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGL-DHSDasrYP- 500
Cdd:cd03220    81 VRGRVSSLLGLG-----------------GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELgDFID---LPv 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 501 AEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGM 580
Cdd:cd03220   141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGK 219


                  ....*
gi 1424538268 581 IVEQG 585
Cdd:cd03220   220 IRFDG 224

cbiO

PRK13643

energy-coupling factor transporter ATPase;

383-609

2.16e-24

energy-coupling factor transporter ATPase;

Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 103.66 E-value: 2.16e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIlgTDVAVLDAAARRRL---RTELQVVFQDPVASLDPRLP 459
Cdd:PRK13643   25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV--GDIVVSSTSKQKEIkpvRKKVGVVFQFPESQLFEETV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIAEPlRANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK13643  103 LKDVAFGP-QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 540 GIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTnpQHEYTRRLLAAVPRA 609
Cdd:PRK13643  182 EMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ--EVDFLKAHELGVPKA 248

3a01208

TIGR00958

Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]

382-594

2.44e-24

Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]

Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 107.89 E-value: 2.44e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDaaaRRRLRTELQVVFQDPVASldpRLPVY 461
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD---HHYLHRQVALVGQEPVLF---SGSVR 572

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAEPLRangfhrhECEERVAELLAVVGLDHSDASRYP-----------AEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:TIGR00958 573 ENIAYGLT-------DTPDEEIMAAAKAANAHDFIMEFPngydtevgekgSQLSGGQKQRIAIARALVRKPRVLILDEAT 645

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 531 SALDVSIQAgivnLLLDLQRRFGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVFTNP 594
Cdd:TIGR00958 646 SALDAECEQ----LLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704

cbiO

PRK13636

cobalt transporter ATP-binding subunit; Provisional

382-608

3.49e-24

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 102.62 E-value: 3.49e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKST---TLNQILeltKPEAGSIEILGTDVavlDAAAR--RRLRTELQVVFQDPvaslDP 456
Cdd:PRK13636   24 GININIKKGEVTAILGGNGAGKSTlfqNLNGIL---KPSSGRILFDGKPI---DYSRKglMKLRESVGMVFQDP----DN 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RL---PVYDVIAEPLRANGFHRHECEERVAELLAVVGLDH-SDASRYPAEFsgGQKQRIGIARALALQPKILALDEPVSA 532
Cdd:PRK13636   94 QLfsaSVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHlKDKPTHCLSF--GQKKRVAIAGVLVMEPKVLVLDEPTAG 171

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 533 LDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTnpQHEYTRRLLAAVPR 608
Cdd:PRK13636  172 LDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA--EKEMLRKVNLRLPR 245

PRK10584

putative ABC transporter ATP-binding protein YbbA; Provisional

4-214

3.99e-24

putative ABC transporter ATP-binding protein YbbA; Provisional

Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 101.01 E-value: 3.99e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGLSDHAM 83
Cdd:PRK10584    6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTL-LAILAGLDDGS--SGEVSLVGQPLHQMDEEAR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRMIGTVFQDPMsaLTPVYTIgdqiAEAIEIHS--REISRADARRRAVELLELVGIAQperRARAFPHELSGGERQ 161
Cdd:PRK10584   83 AKLRAKHVGFVFQSFM--LIPTLNA----LENVELPAllRGESSRQSRNGAKALLEQLGLGK---RLDHLPAQLSGGEQQ 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHD 214
Cdd:PRK10584  154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206

ABCC_MRP_domain2

cd03244

ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ...

381-585

4.00e-24

ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 101.03 E-value: 4.00e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDaaaRRRLRTELQVVFQDPV-------AS 453
Cdd:cd03244    21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG---LHDLRSRISIIPQDPVlfsgtirSN 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 454 LDPrlpvydviaeplrangFHRHEcEERVAELLAVVGLD-----HSDASRYPAE-----FSGGQKQRIGIARALALQPKI 523
Cdd:cd03244    98 LDP----------------FGEYS-DEELWQALERVGLKefvesLPGGLDTVVEeggenLSVGQRQLLCLARALLRKSKI 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 524 LALDEPVSALDVSIQAGIVNLlldLQRRF-GLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQG 585
Cdd:cd03244   161 LVLDEATASVDPETDALIQKT---IREAFkDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219

cbiO

PRK13648

cobalt transporter ATP-binding subunit; Provisional

381-591

4.51e-24

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 102.14 E-value: 4.51e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGsiEILGTDVAVlDAAARRRLRTELQVVFQDPVASLDPRLPV 460
Cdd:PRK13648   26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG--EIFYNNQAI-TDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDViAEPLRANGFHRHECEERVAELLAVVG-LDHSDASryPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK13648  103 YDV-AFGLENHAVPYDEMHRRVSEALKQVDmLERADYE--PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 540 GIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHrVAVMYRGMIVEQGESDQVF 591
Cdd:PRK13648  180 NLLDLVRKVKSEHNITIISITHDLSEAMEADH-VIVMNKGTVYKEGTPTEIF 230

PRK13633

energy-coupling factor transporter ATPase;

381-593

4.80e-24

energy-coupling factor transporter ATPase;

Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 102.47 E-value: 4.80e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAARRRLRTELQVVFQDPVASLDPRLPV 460
Cdd:PRK13633   27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTS--DEENLWDIRNKAGMVFQNPDNQIVATIVE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPlrAN-GFHRHECEERVAELLAVVGLdhSDASRY-PAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:PRK13633  105 EDVAFGP--ENlGIPPEEIRERVDESLKKVGM--YEYRRHaPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR 180

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHDL-SVVKhlAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PRK13633  181 REVVNTIKELNKKYGITIILITHYMeEAVE--ADRIIVMDSGKVVMEGTPKEIFKE 234

ABC_NatA_sodium_exporter

cd03266

ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ...

5-232

6.23e-24

Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 100.13 E-value: 6.23e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIrlhgkELLGLSDHAM 83
Cdd:cd03266     2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLePD----AGFA-----TVDGFDVVKE 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRMIGTVFQDpmSALTPVYTIGDQIAEAIEIHSreISRADARRRAVELLELVGIAQ-PERRARAFphelSGGERQR 162
Cdd:cd03266    73 PAEARRRLGFVSDS--TGLYDRLTARENLEYFAGLYG--LKGDELTARLEELADRLGMEElLDRRVGGF----STGMRQK 144

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVtGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03266   145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGR 213

PRK10619

histidine ABC transporter ATP-binding protein HisP;

5-249

7.08e-24

histidine ABC transporter ATP-binding protein HisP;

Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 101.20 E-value: 7.08e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYARvsGSIRLHGKEL--------- 75
Cdd:PRK10619    6 LNVIDLHKRYGEHEV----LKGVSLQANAGDVISIIGSSGSGKSTF-LRCINFLEKPSE--GSIVVNGQTInlvrdkdgq 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  76 LGLSD-HAMSQIRGRMIgTVFQDpmSALTPVYTIGDQIAEAiEIHSREISRADARRRAVELLELVGIAqpERRARAFPHE 154
Cdd:PRK10619   79 LKVADkNQLRLLRTRLT-MVFQH--FNLWSHMTVLENVMEA-PIQVLGLSKQEARERAVKYLAKVGID--ERAQGKYPVH 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 LSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:PRK10619  153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231

                         250
                  ....*....|....*
gi 1424538268 235 EIAAVDELYRDRRMP 249
Cdd:PRK10619  232 EEGAPEQLFGNPQSP 246

cbiO

PRK13649

energy-coupling factor transporter ATPase;

382-591

7.09e-24

energy-coupling factor transporter ATPase;

Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 101.74 E-value: 7.09e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAAR-RRLRTELQVVFQDPVASLDPRLPV 460
Cdd:PRK13649   25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDiKQIRKKVGLVFQFPESQLFEETVL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPlRANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:PRK13649  105 KDVAFGP-QNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 541 IVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVF 591
Cdd:PRK13649  184 LMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233

PRK14239

phosphate transporter ATP-binding protein; Provisional

352-599

9.16e-24

phosphate transporter ATP-binding protein; Provisional

Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 100.62 E-value: 9.16e-24

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKST---TLNQILELTkPE---AGSIEILG 425
Cdd:PRK14239    5 ILQVSDLSVYYNKKK------------ALNSVSLDFYPNEITALIGPSGSGKSTllrSINRMNDLN-PEvtiTGSIVYNG 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 426 TDVAvldaaARR----RLRTELQVVFQDPvaslDP-RLPVYDVIAEPLRANGFH-RHECEERVAELLAVVGL-----DHS 494
Cdd:PRK14239   72 HNIY-----SPRtdtvDLRKEIGMVFQQP----NPfPMSIYENVVYGLRLKGIKdKQVLDEAVEKSLKGASIwdevkDRL 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 495 DASryPAEFSGGQKQRIGIARALALQPKILALDEPVSALDvSIQAG-IVNLLLDLQRRFGLsyLFVSHDLSVVKHLAHRV 573
Cdd:PRK14239  143 HDS--ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD-PISAGkIEETLLGLKDDYTM--LLVTRSMQQASRISDRT 217

                         250       260
                  ....*....|....*....|....*.
gi 1424538268 574 AVMYRGMIVEQGESDQVFTNPQHEYT 599
Cdd:PRK14239  218 GFFLDGDLIEYNDTKQMFMNPKHKET 243

ABC_cobalt_CbiO_domain2

cd03226

Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ...

381-582

1.08e-23

Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 99.25 E-value: 1.08e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDvavldAAARRRLRTeLQVVFQDPvaslDPRLPV 460
Cdd:cd03226    17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP-----IKAKERRKS-IGYVMQDV----DYQLFT 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGfHRHECEERVAELLAVVGLdHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03226    87 DSVREELLLGLK-ELDAGNEQAETVLKDLDL-YALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1424538268 541 IVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIV 582
Cdd:cd03226   165 VGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205

thiQ

PRK10771

thiamine ABC transporter ATP-binding protein ThiQ;

384-589

1.20e-23

thiamine ABC transporter ATP-binding protein ThiQ;

Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 99.66 E-value: 1.20e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 384 SFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvLDAAARRrlrtELQVVFQDpvASLDPRLPVYDV 463
Cdd:PRK10771   19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT-TTPPSRR----PVSMLFQE--NNLFSHLTVAQN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 464 IA---EP-LRANGFHRHECEERVAEllavVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK10771   92 IGlglNPgLKLNAAQREKLHAIARQ----MGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1424538268 540 GIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQ 589
Cdd:PRK10771  167 EMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216

PRK10070

proline/glycine betaine ABC transporter ATP-binding protein ProV;

23-242

1.24e-23

proline/glycine betaine ABC transporter ATP-binding protein ProV;

Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 103.57 E-value: 1.24e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  23 AVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYARvsGSIRLHGKELLGLSDHAMSQIRGRMIGTVFQDpmSAL 102
Cdd:PRK10070   43 GVKDASLAIEEGEIFVIMGLSGSGKSTM-VRLLNRLIEPTR--GQVLIDGVDIAKISDAELREVRRKKIAMVFQS--FAL 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 103 TPVYTIGDQIAEAIEIHSreISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
Cdd:PRK10070  118 MPHMTVLDNTAFGMELAG--INAEERREKALDALRQVGL---ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 183 TALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:PRK10070  193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252

ABCC_Hemolysin

cd03252

ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ...

11-250

1.26e-23

Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 99.87 E-value: 1.26e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELlGLSDHAMSQirgRM 90
Cdd:cd03252     5 HVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF---YVPENGRVLVDGHDL-ALADPAWLR---RQ 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDpmsALTPVYTIGDQIAEAIEIHSRE-----ISRADARRRAVELLELVGIAQPERRArafphELSGGERQRVVI 165
Cdd:cd03252    78 VGVVLQE---NVLFNRSIRDNIALADPGMSMErvieaAKLAGAHDFISELPEGYDTIVGEQGA-----GLSGGQRQRIAI 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 166 AIAIANDPDLLICDEPTTALDVTVQAQIldvLRTARDV-TGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDELYR 244
Cdd:cd03252   150 ARALIHNPRILIFDEATSALDYESEHAI---MRNMHDIcAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLA 225


                  ....*.
gi 1424538268 245 DRRMPY 250
Cdd:cd03252   226 ENGLYA 231

cbiO

PRK13637

energy-coupling factor transporter ATPase;

14-261

1.42e-23

energy-coupling factor transporter ATPase;

Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 100.89 E-value: 1.42e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  14 FETEdievpAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHaMSQIRGRmIGT 93
Cdd:PRK13637   18 FEKK-----ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKIIIDGVDITDKKVK-LSDIRKK-VGL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  94 VFQDPMSALtpvytIGDQIAEAIEIHSRE--ISRADARRRAVELLELVGIAQPERRARAfPHELSGGERQRVVIAIAIAN 171
Cdd:PRK13637   88 VFQYPEYQL-----FEETIEKDIAFGPINlgLSEEEIENRVKRAMNIVGLDYEDYKDKS-PFELSGGQKRRVAIAGVVAM 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 172 DPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYT 251
Cdd:PRK13637  162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLES 241

                         250
                  ....*....|
gi 1424538268 252 VGLlgSVPRL 261
Cdd:PRK13637  242 IGL--AVPQV 249

ugpC

PRK11650

sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;

381-594

1.42e-23

sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;

Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 102.61 E-value: 1.42e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARrrlrtELQVVFQDpvASLDPRLPV 460
Cdd:PRK11650   21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADR-----DIAMVFQN--YALYPHMSV 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:PRK11650   94 RENMAYGLKIRGMPKAEIEERVAEAARILELEPL-LDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIvEQ-GESDQVFTNP 594
Cdd:PRK11650  173 MRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA-EQiGTPVEVYEKP 226

PhnK

COG1101

ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...

5-232

1.46e-23

ABC-type uncharacterized transport system, ATPase component [General function prediction only];

Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 100.55 E-value: 1.46e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDI-EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHAm 83
Cdd:COG1101     2 LELKNLSKTFNPGTVnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPP---DSGSILIDGKDVTKLPEYK- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 sqiRGRMIGTVFQDPMSALTPVYTIGDQIAEAI-EIHSREISRA-DARRRAV--ELLELVGIAQpERRARAFPHELSGGE 159
Cdd:COG1101    78 ---RAKYIGRVFQDPMMGTAPSMTIEENLALAYrRGKRRGLRRGlTKKRRELfrELLATLGLGL-ENRLDTKVGLLSGGQ 153

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVlrTARDVT--GAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:COG1101   154 RQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLEL--TEKIVEenNLTTLMVTHNMEQALDYGNRLIMMHEGR 226

ABC_MTABC3_MDL1_MDL2

cd03249

ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ...

20-243

1.71e-23

Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 99.54 E-value: 1.71e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPE-YARVSGSIRLHGKELlglSDHAMSQIRgRMIGTVFQDP 98
Cdd:cd03249    15 DVPILKGLSLTIPPGKTVALVGSSGCGKST----VVSLLERfYDPTSGEILLDGVDI---RDLNLRWLR-SQIGLVSQEP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  99 MSALTpvyTIGDQIA----EAIEIHSREISRADARRRAVELL-----ELVGiaqperrARAFphELSGGERQRVVIAIAI 169
Cdd:cd03249    87 VLFDG---TIAENIRygkpDATDEEVEEAAKKANIHDFIMSLpdgydTLVG-------ERGS--QLSGGQKQRIAIARAL 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 170 ANDPDLLICDEPTTALDVTVQAQILDVLRTARdvTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDELY 243
Cdd:cd03249   155 LRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELM 225

bacteriocin_ABC

TIGR01193

ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ...

381-590

1.88e-23

ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]

Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 105.21 E-value: 1.88e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDaaaRRRLRTELQVVFQDPVasldprlpV 460
Cdd:TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID---RHTLRQFINYLPQEPY--------I 559

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YD-VIAEPLRAnGFHRHECEERVAELLAVVGLD----------HSDASRYPAEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:TIGR01193 560 FSgSILENLLL-GAKENVSQDEIWAACEIAEIKddienmplgyQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 530 VSALDVSIQAGIVNLLLDLQRRfglSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQV 590
Cdd:TIGR01193 639 TSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDEL 695

cbiO

PRK13647

cobalt transporter ATP-binding subunit; Provisional

1-232

1.95e-23

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 100.20 E-value: 1.95e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLnvTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELlglSD 80
Cdd:PRK13647    1 MDNIIEVEDL--HFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI---YLPQRGRVKVMGREV---NA 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGrMIGTVFQDPMSALTPVyTIGDQIAeaIEIHSREISRADARRRAVELLELVGIAQPERRArafPHELSGGER 160
Cdd:PRK13647   72 ENEKWVRS-KVGLVFQDPDDQVFSS-TVWDDVA--FGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP---PYHLSYGQK 144

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQA---QILDVLRTArdvtGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:PRK13647  145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQEtlmEILDRLHNQ----GKTVIVATHDVDLAAEWADQVIVLKEGR 215

ntrCD

TIGR01184

nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ...

24-246

2.09e-23

Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 99.08 E-value: 2.09e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGL-LPeyarVSGSIRLHGKELlglsdhamsQIRG--RMIgtVFQDpmS 100
Cdd:TIGR01184   1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLaQP----TSGGVILEGKQI---------TEPGpdRMV--VFQN--Y 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 ALTPVYTIGDQIAEAIEIHSREISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQRVVIAIAIANDPDLLICDE 180
Cdd:TIGR01184  64 SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGL---TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDE 140

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 181 PTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDR 246
Cdd:TIGR01184 141 PFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFPR 206

cbiO

PRK13641

energy-coupling factor transporter ATPase;

28-246

2.39e-23

energy-coupling factor transporter ATPase;

Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 100.29 E-value: 2.39e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKEL-LGLSDHAMSQIRgRMIGTVFQDPMSALtpv 105
Cdd:PRK13641   27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLkPS----SGTITIAGYHItPETGNKNLKKLR-KKVSLVFQFPEAQL--- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 106 ytIGDQIAEAIEIHSRE--ISRADARRRAVELLELVGIaqPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTT 183
Cdd:PRK13641   99 --FENTVLKDVEFGPKNfgFSEDEAKEKALKWLKKVGL--SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 184 ALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDR 246
Cdd:PRK13641  175 GLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236

MsbA_rel

TIGR02204

ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ...

381-591

2.59e-23

ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 104.40 E-value: 2.59e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDaaaRRRLRTELQVVFQDPV-----ASLD 455
Cdd:TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD---PAELRARMALVPQDPVlfaasVMEN 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 PRLPVYDVIAEPLR--ANGFHRHECEERVAEllavvGLDHSDASRyPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:TIGR02204 434 IRYGRPDATDEEVEaaARAAHAHEFISALPE-----GYDTYLGER-GVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 534 DVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVF 591
Cdd:TIGR02204 508 DAESEQLVQQALETLMK--GRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAELI 562

PRK10535

macrolide ABC transporter ATP-binding protein/permease MacB;

1-234

2.62e-23

macrolide ABC transporter ATP-binding protein/permease MacB;

Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 104.42 E-value: 2.62e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGSIRLHGKELLGLSD 80
Cdd:PRK10535    1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTL-MNILGCLDKPT--SGTYRVAGQDVATLDA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGRMIGTVFQ--DPMSALTPvytigdqiAEAIEIHS--REISRADARRRAVELLELVGIAQperRARAFPHELS 156
Cdd:PRK10535   78 DALAQLRREHFGFIFQryHLLSHLTA--------AQNVEVPAvyAGLERKQRLLRAQELLQRLGLED---RVEYQPSQLS 146

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEfADRALVMYAGRPV 234
Cdd:PRK10535  147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222

cbiO

PRK13644

energy-coupling factor transporter ATPase;

383-598

2.84e-23

energy-coupling factor transporter ATPase;

Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 100.06 E-value: 2.84e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAARRRLRTELQVVFQDPVASLDPRLPVYD 462
Cdd:PRK13644   21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG--DFSKLQGIRKLVGIVFQNPETQFVGRTVEED 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPLRAnGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIV 542
Cdd:PRK13644   99 LAFGPENL-CLPPIEIRKRVDRALAEIGLEKY-RHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 543 NLLLDLQRRfGLSYLFVSHDLSVVkHLAHRVAVMYRGMIVEQGESDQVFTNPQHEY 598
Cdd:PRK13644  177 ERIKKLHEK-GKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDVSLQT 230

SufC

COG0396

Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ...

5-235

3.96e-23

Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 98.60 E-value: 3.96e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlPEYARVSGSIRLHGKELLGLSDHAms 84
Cdd:COG0396     1 LEIKNLHVSVEGKEI----LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGH-PKYEVTSGSILLDGEDILELSPDE-- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qiRGRM-IGTVFQDPMSalTPVYTIGDQIAEAI-EIHSREISRADARRRAVELLELVGIAqPERRARAFPHELSGGERQR 162
Cdd:COG0396    74 --RARAgIFLAFQYPVE--IPGVSVSNFLRTALnARRGEELSAREFLKLLKEKMKELGLD-EDFLDRYVNEGFSGGEKKR 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVtvqaqilDVLRTARDV------TGAAVLIITH-----DLGVvsefADRALVMYAG 231
Cdd:COG0396   149 NEILQMLLLEPKLAILDETDSGLDI-------DALRIVAEGvnklrsPDRGILIITHyqrilDYIK----PDFVHVLVDG 217


                  ....
gi 1424538268 232 RPVE 235
Cdd:COG0396   218 RIVK 221

ABCC_bacteriocin_exporters

cd03245

ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ...

11-234

5.46e-23

ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 97.66 E-value: 5.46e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELLGLSdhaMSQIRgRM 90
Cdd:cd03245     7 NVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL---YKPTSGSVLLDGTDIRQLD---PADLR-RN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDPmsalTPVY-TIGDQIAEAIEIHSREisradarrRAVELLELVGIAQperRARAFPH-----------ELSGG 158
Cdd:cd03245    80 IGYVPQDV----TLFYgTLRDNITLGAPLADDE--------RILRAAELAGVTD---FVNKHPNgldlqigergrGLSGG 144

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT-ARDVTgaaVLIITHDLGVVSeFADRALVMYAGRPV 234
Cdd:cd03245   145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQlLGDKT---LIIITHRPSLLD-LVDRIIVMDSGRIV 217

PRK13651

cobalt transporter ATP-binding subunit; Provisional

5-232

5.60e-23

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 99.78 E-value: 5.60e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETE-DIEVPAVRGTSYHIDPGEVLAIVGESGCGKTT-----AALavigLLPEyarvSGSIRL-----HGK 73
Cdd:PRK13651    3 IKVKNIVKIFNKKlPTELKALDNVSVEINQGEFIAIIGQTGSGKTTfiehlNAL----LLPD----TGTIEWifkdeKNK 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  74 ELLGLSDHAMS----------------QIRgRMIGTVFQDPMSALTPVYTIGDQIAEAIeihSREISRADARRRAVELLE 137
Cdd:PRK13651   75 KKTKEKEKVLEklviqktrfkkikkikEIR-RRVGVVFQFAEYQLFEQTIEKDIIFGPV---SMGVSKEEAKKRAAKYIE 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 138 LVGIaqPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGV 217
Cdd:PRK13651  151 LVGL--DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDN 227

                         250
                  ....*....|....*
gi 1424538268 218 VSEFADRALVMYAGR 232
Cdd:PRK13651  228 VLEWTKRTIFFKDGK 242

ModF

COG1119

ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ...

2-242

6.32e-23

ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];

Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 98.23 E-value: 6.32e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   2 TAVLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLP--EYARVSGSIRLHGKELLGLS 79
Cdd:COG1119     1 DPLLELRNVTVRRGGKTI----LDDISWTVKPGEHWAILGPNGAGKST----LLSLITgdLPPTYGNDVRLFGERRGGED 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 dhaMSQIRGRmIGTVFQDPMSALTPVYTIGDQIAEA----IEIHsREISRADaRRRAVELLELVGIAqpERRARAFpHEL 155
Cdd:COG1119    73 ---VWELRKR-IGLVSPALQLRFPRDETVLDVVLSGffdsIGLY-REPTDEQ-RERARELLELLGLA--HLADRPF-GTL 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 156 SGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:COG1119   144 SQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVA 223


                  ....*..
gi 1424538268 236 IAAVDEL 242
Cdd:COG1119   224 AGPKEEV 230

PRK13657

glucan ABC transporter ATP-binding protein/ permease;

381-589

6.79e-23

glucan ABC transporter ATP-binding protein/ permease;

Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 103.12 E-value: 6.79e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLdaaARRRLRTELQVVFQDpvASLDPRlpv 460
Cdd:PRK13657  352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV---TRASLRRNIAVVFQD--AGLFNR--- 423

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 ydVIAEPLRANGFHRHECE-ERVAELLAVVGLDHSDASRYPA-------EFSGGQKQRIGIARALALQPKILALDEPVSA 532
Cdd:PRK13657  424 --SIEDNIRVGRPDATDEEmRAAAERAQAHDFIERKPDGYDTvvgergrQLSGGERQRLAIARALLKDPPILILDEATSA 501

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 533 LDVSIQAGiVNLLLDLQRRfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQ 589
Cdd:PRK13657  502 LDVETEAK-VKAALDELMK-GRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDE 555

potA

PRK09452

spermidine/putrescine ABC transporter ATP-binding protein PotA;

2-245

7.29e-23

spermidine/putrescine ABC transporter ATP-binding protein PotA;

Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 100.79 E-value: 7.29e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   2 TAVLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpEYARvSGSIRLHGKELLGLSDH 81
Cdd:PRK09452   12 SPLVELRGISKSFDGKEV----ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF--ETPD-SGRIMLDGQDITHVPAE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  82 AmsqirgRMIGTVFQDpmSALTPVYTIGDQIAEAIEIhsREISRADARRRAVELLELVgiaQPERRARAFPHELSGGERQ 161
Cdd:PRK09452   85 N------RHVNTVFQS--YALFPHMTVFENVAFGLRM--QKTPAAEITPRVMEALRMV---QLEEFAQRKPHQLSGGQQQ 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDE 241
Cdd:PRK09452  152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231


                  ....
gi 1424538268 242 LYRD 245
Cdd:PRK09452  232 IYEE 235

SufC

COG0396

Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ...

381-585

7.45e-23

Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 97.83 E-value: 7.45e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQIL--ELTKPEAGSIEILGTDVavLDAAARRRLRTELQVVFQDPVASldPRL 458
Cdd:COG0396    17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMghPKYEVTSGSILLDGEDI--LELSPDERARAGIFLAFQYPVEI--PGV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 PVYDVI--------AEPLRANGFHRheceeRVAELLAVVGLDHSDASRYPAE-FSGGQKQRIGIARALALQPKILALDEP 529
Cdd:COG0396    93 SVSNFLrtalnarrGEELSAREFLK-----LLKEKMKELGLDEDFLDRYVNEgFSGGEKKRNEILQMLLLEPKLAILDET 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 530 VSALDV---SIQAGIVNLLLDLQRrfglSYLFVSHDLSVVKHL-AHRVAVMYRGMIVEQG 585
Cdd:COG0396   168 DSGLDIdalRIVAEGVNKLRSPDR----GILIITHYQRILDYIkPDFVHVLVDGRIVKSG 223

AztA

zinc ABC transporter ATP-binding protein AztA;

22-228

8.64e-23

zinc ABC transporter ATP-binding protein AztA;

Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 96.15 E-value: 8.64e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGkellglsdhamsqirGRMIGTVFQdpMSA 101
Cdd:NF040873    6 PVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRP---TSGTVRRAG---------------GARVAYVPQ--RSE 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTPVYTIgdQIAEAIEI-------HSREISRADaRRRAVELLELVGIAQPERRARafpHELSGGERQRVVIAIAIANDPD 174
Cdd:NF040873   66 VPDSLPL--TVRDLVAMgrwarrgLWRRLTRDD-RAAVDDALERVGLADLAGRQL---GELSGGQRQRALLAQGLAQEAD 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 175 LLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEfADRALVM 228
Cdd:NF040873  140 LLLLDEPTTGLDAESRERIIALLAEEHA-RGATVVVVTHDLELVRR-ADPCVLL 191

ABCC_ATM1_transporter

cd03253

ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ...

381-585

9.85e-23

Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 97.30 E-value: 9.85e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrLRTELQVVFQDPVAsldprlpV 460
Cdd:cd03253    18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDS---LRRAIGVVPQDTVL-------F 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLR-----ANgfhrhecEERVAELlAVVGLDHSDASRYPAEF-----------SGGQKQRIGIARALALQPKIL 524
Cdd:cd03253    88 NDTIGYNIRygrpdAT-------DEEVIEA-AKAAQIHDKIMRFPDGYdtivgerglklSGGEKQRVAIARAILKNPPIL 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 525 ALDEPVSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQG 585
Cdd:cd03253   160 LLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERG 217

PRK13549

xylose transporter ATP-binding subunit; Provisional

1-581

9.96e-23

xylose transporter ATP-binding subunit; Provisional

Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 101.93 E-value: 9.96e-23

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeYARVSGSIRLHGKELL--GL 78
Cdd:PRK13549    2 MEYLLEMKNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYEGEIIFEGEELQasNI 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  79 SDhamSQIRGrmIGTVFQDPMsaLTPVYTIGDQIAEAIEIHSREISRADA-RRRAVELLELVGIA-QPERRARafphELS 156
Cdd:PRK13549   77 RD---TERAG--IAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAmYLRAQKLLAQLKLDiNPATPVG----NLG 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEI 236
Cdd:PRK13549  146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 237 AAVDELYRDRRMPYTVGllgsvpRldaaqgtrlipipgappTMTSLspgactfAPRCPLAIDEclsaepdlvrvadghwa 316
Cdd:PRK13549  225 RPAAGMTEDDIITMMVG------R-----------------ELTAL-------YPREPHTIGE----------------- 257

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 317 acirtddvagrsaadvfgvstqpppnnaaggqppVVLRVSDLT---KTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTL 393
Cdd:PRK13549  258 ----------------------------------VILEVRNLTawdPVNPHIK------------RVDDVSFSLRRGEIL 291

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 394 GIVGESGSGKsTTLNQILELTKPEA--GSIEILGTDVAVldAAARRRLRTELQVVFQD-------PVASL--DPRLPVYD 462
Cdd:PRK13549  292 GIAGLVGAGR-TELVQCLFGAYPGRweGEIFIDGKPVKI--RNPQQAIAQGIAMVPEDrkrdgivPVMGVgkNITLAALD 368

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPLRANGFHRHEC-EERVAEL--------LAVVGLdhsdasrypaefSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:PRK13549  369 RFTGGSRIDDAAELKTiLESIQRLkvktaspeLAIARL------------SGGNQQKAVLAKCLLLNPKILILDEPTRGI 436

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*...
gi 1424538268 534 DVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:PRK13549  437 DVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKL 483

PRK10535

macrolide ABC transporter ATP-binding protein/permease MacB;

381-582

1.37e-22

macrolide ABC transporter ATP-binding protein/permease MacB;

Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 102.49 E-value: 1.37e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTE-LQVVFQDpvASLDPRLP 459
Cdd:PRK10535   25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREhFGFIFQR--YHLLSHLT 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK10535  103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1424538268 540 GIVNLLLDLQRRfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIV 582
Cdd:PRK10535  182 EVMAILHQLRDR-GHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222

cbiO

PRK13636

cobalt transporter ATP-binding subunit; Provisional

4-261

1.55e-22

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 98.00 E-value: 1.55e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFE--TEdievpAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELlGLSDH 81
Cdd:PRK13636    5 ILKVEELNYNYSdgTH-----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPI-DYSRK 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  82 AMSQIRgRMIGTVFQDPMSALTPVYTIGDQIAEAIEIhsrEISRADARRRAVELLELVGIAQPERRArafPHELSGGERQ 161
Cdd:PRK13636   76 GLMKLR-ESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP---THCLSFGQKK 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDE 241
Cdd:PRK13636  149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228

                         250       260
                  ....*....|....*....|
gi 1424538268 242 LYRDRRMPYTVGLlgSVPRL 261
Cdd:PRK13636  229 VFAEKEMLRKVNL--RLPRI 246

ABC_NatA_like

cd03267

ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ...

353-585

1.57e-22

ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.

Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 96.63 E-value: 1.57e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 353 LRVSDLTKTYRLTKGVVVRRRVGEV---------RAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEI 423
Cdd:cd03267     1 IEVSNLSKSYRVYSKEPGLIGSLKSlfkrkyrevEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 424 LGtdvaVLDAAARRRLRTELQVVF-QDPVASLDprLPV---YDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDASRy 499
Cdd:cd03267    81 AG----LVPWKRRKKFLRRIGVVFgQKTQLWWD--LPVidsFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQ- 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 500 paeFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRG 579
Cdd:cd03267   154 ---LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230


                  ....*.
gi 1424538268 580 MIVEQG 585
Cdd:cd03267   231 RLLYDG 236

COG4674

ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...

381-595

1.72e-22

ABC-type uncharacterized transport system, ATPase component [General function prediction only];

Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 97.11 E-value: 1.72e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRL---RTelqvvFQDPvaSLDPR 457
Cdd:COG4674    27 NDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLgigRK-----FQKP--TVFEE 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 LPVYD--VIAEP----LRANGFHRH--ECEERVAELLAVVGLDHsDASRYPAEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:COG4674   100 LTVFEnlELALKgdrgVFASLFARLtaEERDRIEEVLETIGLTD-KADRLAGLLSHGQKQWLEIGMLLAQDPKLLLLDEP 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 530 VSALDVSIQAGIVNLLLDLQRRFglSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:COG4674   179 VAGMTDAETERTAELLKSLAGKH--SVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQADPR 242

ABC_BcrA_bacitracin_resist

cd03268

ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ...

5-235

1.75e-22

Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 95.75 E-value: 1.75e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELLGLSDhAMS 84
Cdd:cd03268     1 LKTNDLTKTYGK----KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL---IKPDSGEITFDGKSYQKNIE-ALR 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIrGRMI-GTVFQDPMSALtpvytigdqiaEAIEIHSREISRADarRRAVELLELVGIAQ-PERRARAFphelSGGERQR 162
Cdd:cd03268    73 RI-GALIeAPGFYPNLTAR-----------ENLRLLARLLGIRK--KRIDEVLDVVGLKDsAKKKVKGF----SLGMKQR 134

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:cd03268   135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIE 206

ssuB

PRK11247

aliphatic sulfonates transport ATP-binding subunit; Provisional

381-586

2.08e-22

aliphatic sulfonates transport ATP-binding subunit; Provisional

Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 97.06 E-value: 2.08e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGsiEILGTDVAVLDAaarrrlRTELQVVFQDpvASLDPRLPV 460
Cdd:PRK11247   29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG--ELLAGTAPLAEA------REDTRLMFQD--ARLLPWKKV 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANgfhrheCEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:PRK11247   99 IDNVGLGLKGQ------WRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVavmyrgMIVEQGE 586
Cdd:PRK11247  172 MQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV------LLIEEGK 211

MsbA_lipidA

TIGR02203

lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ...

328-585

2.10e-22

Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 101.33 E-value: 2.10e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 328 SAADVFGVSTQPPPNNAAGGQPPVV---LRVSDLTKTYRltkgvvvrrrVGEVRAVDGISFTLEQGRTLGIVGESGSGKS 404
Cdd:TIGR02203 303 AAESLFTLLDSPPEKDTGTRAIERArgdVEFRNVTFRYP----------GRDRPALDSISLVIEPGETVALVGRSGSGKS 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 405 TTLNQILELTKPEAGSIEILGTDVAVLdaaARRRLRTELQVVFQDpVASLDprlpvyDVIAEPL---RANGFHRHECEE- 480
Cdd:TIGR02203 373 TLVNLIPRFYEPDSGQILLDGHDLADY---TLASLRRQVALVSQD-VVLFN------DTIANNIaygRTEQADRAEIERa 442

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 481 -RVAELLAVV-----GLDH---SDASRypaeFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRr 551
Cdd:TIGR02203 443 lAAAYAQDFVdklplGLDTpigENGVL----LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ- 517

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1424538268 552 fGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQG 585
Cdd:TIGR02203 518 -GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERG 549

type_I_sec_LssB

TIGR03375

type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ...

381-592

2.12e-22

type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]

Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 101.87 E-value: 2.12e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtELQVVFQDPV---ASLdpr 457
Cdd:TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR---NIGYVPQDPRlfyGTL--- 555

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 lpvYDVIAepLRAngfhRHECEERVAELLAVVGLdHSDASRYPAEF-----------SGGQKQRIGIARALALQPKILAL 526
Cdd:TIGR03375 556 ---RDNIA--LGA----PYADDEEILRAAELAGV-TEFVRRHPDGLdmqigergrslSGGQRQAVALARALLRDPPILLL 625

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 527 DEPVSALDVSIQAgivnLLLDLQRRF--GLSYLFVSHDLSVVKhLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:TIGR03375 626 DEPTSAMDNRSEE----RFKDRLKRWlaGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLE 688

Uup

COG0488

ATPase components of ABC transporters with duplicated ATPase domains [General function ...

7-562

2.50e-22

ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];

Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 100.91 E-value: 2.50e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   7 VTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVI-GLLPEYarvSGSIRLHGkellglsdhamsQ 85
Cdd:COG0488     1 LENLSKSFGGRPL----LDDVSLSINPGDRIGLVGRNGAGKSTL-LKILaGELEPD---SGEVSIPK------------G 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  86 IRgrmIGTVFQDP------------MSALTPVYTIGDQIAEA---IEIHSREISRA-------------DARRRAVELLE 137
Cdd:COG0488    61 LR---IGYLPQEPpldddltvldtvLDGDAELRALEAELEELeakLAEPDEDLERLaelqeefealggwEAEARAEEILS 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 138 LVGIAQPERRARAfpHELSGGERQRVVIAIAIANDPDLLICDEPTTALDV-TVQ--AQILdvlrtaRDVTGAaVLIITHD 214
Cdd:COG0488   138 GLGFPEEDLDRPV--SELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLeSIEwlEEFL------KNYPGT-VLVVSHD 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 215 ---L-GVVS---EFADRALVMYAG---------------RPVEIAAVDELYRD-----RRMpytvgllgsvpRLDAAQGT 267
Cdd:COG0488   209 ryfLdRVATrilELDRGKLTLYPGnysayleqraerleqEAAAYAKQQKKIAKeeefiRRF-----------RAKARKAK 277

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 268 RlipipgapptMTSlspgactfaprcplaideclsaepdlvRVADghwAACIRTDDVAGRSAADVFGVSTQPPPnnaagg 347
Cdd:COG0488   278 Q----------AQS---------------------------RIKA---LEKLEREEPPRRDKTVEIRFPPPERL------ 311

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 348 qPPVVLRVSDLTKTYrltkgvvvrrrvGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIlGTD 427
Cdd:COG0488   312 -GKKVLELEGLSKSY------------GDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GET 377

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 428 V--AVLDaaarrrlrtelqvvfQDpVASLDPRLPVYDVIAEplrangFHRHECEERVAELLAVVGLDHSDASRYPAEFSG 505
Cdd:COG0488   378 VkiGYFD---------------QH-QEELDPDKTVLDELRD------GAPGGTEQEVRGYLGRFLFSGDDAFKPVGVLSG 435

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 506 GQKQRIGIARALALQPKILALDEPVSALDV-SIQAgIVNLLLDlqrrFGLSYLFVSHD 562
Cdd:COG0488   436 GEKARLALAKLLLSPPNVLLLDEPTNHLDIeTLEA-LEEALDD----FPGTVLLVSHD 488

PRK13633

energy-coupling factor transporter ATPase;

11-261

2.55e-22

energy-coupling factor transporter ATPase;

Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 97.08 E-value: 2.55e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTF----ETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELLGLSDhaMSQ 85
Cdd:PRK13633    9 NVSYkyesNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLiPS----EGKVYVDGLDTSDEEN--LWD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  86 IRGRMiGTVFQDPMSALtpVYTIGDQ-IA---EAIEIHSREIsradaRRRAVELLELVGIAQPERRArafPHELSGGERQ 161
Cdd:PRK13633   83 IRNKA-GMVFQNPDNQI--VATIVEEdVAfgpENLGIPPEEI-----RERVDESLKKVGMYEYRRHA---PHLLSGGQKQ 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDE 241
Cdd:PRK13633  152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKE 230

                         250       260
                  ....*....|....*....|
gi 1424538268 242 LYRDRRMPYTVGLlgSVPRL 261
Cdd:PRK13633  231 IFKEVEMMKKIGL--DVPQV 248

oligo_HPY

TIGR01727

oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ...

234-318

2.84e-22

Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 91.27 E-value: 2.84e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 234 VEIAAVDELYRDRRMPYTVGLLGSVPRLdAAQGTRLIPIPGAPPTMTSLSPGaCTFAPRCPLAIDECLSAEPDLVRVADG 313
Cdd:TIGR01727   3 VETGPAEEIFKNPLHPYTKALLSAIPTI-KKRDRKLISIPGEVPSLINLPSG-CRFYPRCPYAQDECRKEPPALVEIAEG 80


                  ....*
gi 1424538268 314 HWAAC 318
Cdd:TIGR01727  81 HRVAC 85

fbpC

PRK11432

ferric ABC transporter ATP-binding protein;

31-244

3.25e-22

ferric ABC transporter ATP-binding protein;

Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 98.25 E-value: 3.25e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKellglsDHAMSQIRGRMIGTVFQDpmSALTPVYTIGD 110
Cdd:PRK11432   29 IKQGTMVTLLGPSGCGKTTVLRLVAGL---EKPTEGQIFIDGE------DVTHRSIQQRDICMVFQS--YALFPHMSLGE 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 111 QIAEAIEIHSReiSRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQ 190
Cdd:PRK11432   98 NVGYGLKMLGV--PKEERKQRVKEALELVDLAGFEDR---YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLR 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 191 AQILDVLRTARDVTGAAVLIITHDLgvvSE-FA--DRALVMYAGRPVEIAAVDELYR 244
Cdd:PRK11432  173 RSMREKIRELQQQFNITSLYVTHDQ---SEaFAvsDTVIVMNKGKIMQIGSPQELYR 226

CeuD

COG4604

ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ...

381-592

3.82e-22

ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 95.92 E-value: 3.82e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAA--ARRrlrteLQVVFQDPvaSLDPRL 458
Cdd:COG4604    18 DDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRelAKR-----LAILRQEN--HINSRL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 PVYDVIaeplranGFHRH---------ECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:COG4604    91 TVRELV-------AFGRFpyskgrltaEDREIIDEAIAYLDLEDL-ADRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 530 VSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:COG4604   163 LNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIIT 225

cbiO

PRK13631

cobalt transporter ATP-binding subunit; Provisional

4-246

3.99e-22

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 97.61 E-value: 3.99e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTF-ETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEYARVSGS---IRLHGKELLGL 78
Cdd:PRK13631   21 ILRVKNLYCVFdEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIkSKYGTIQVGdiyIGDKKNNHELI 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  79 SDHAMSQIRG-----RMIGTVFQDPMSALtpvytIGDQIAEAIEIH--SREISRADARRRAVELLELVGIAQP--ERRar 149
Cdd:PRK13631  101 TNPYSKKIKNfkelrRRVSMVFQFPEYQL-----FKDTIEKDIMFGpvALGVKKSEAKKLAKFYLNKMGLDDSylERS-- 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 150 afPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMY 229
Cdd:PRK13631  174 --PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMD 250

                         250
                  ....*....|....*..
gi 1424538268 230 AGRPVEIAAVDELYRDR 246
Cdd:PRK13631  251 KGKILKTGTPYEIFTDQ 267

LivF

COG0410

ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ...

382-595

4.21e-22

ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];

Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 95.43 E-value: 4.21e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRL---------RtelqvVFqdpva 452
Cdd:COG0410    21 GVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLgigyvpegrR-----IF----- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 453 sldPRLPVYD--VIAEPLRANGFHRHECEERVAELlavvgldhsdasrYP--AEF--------SGGQKQRIGIARALALQ 520
Cdd:COG0410    91 ---PSLTVEEnlLLGAYARRDRAEVRADLERVYEL-------------FPrlKERrrqragtlSGGEQQMLAIGRALMSR 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 521 PKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:COG0410   155 PKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPE 228

modC

PRK11144

molybdenum ABC transporter ATP-binding protein ModC;

395-595

4.98e-22

molybdenum ABC transporter ATP-binding protein ModC;

Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 98.02 E-value: 4.98e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 395 IVGESGSGKSTTLNQILELTKPEAGSIeILGTDVAVlDAAARRRLRTELQ---VVFQDPvasldpRL-PVYDViaeplRA 470
Cdd:PRK11144   29 IFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLF-DAEKGICLPPEKRrigYVFQDA------RLfPHYKV-----RG 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 471 N---GFhRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLD 547
Cdd:PRK11144   96 NlryGM-AKSMVAQFDKIVALLGIEPL-LDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1424538268 548 LQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK11144  174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221

cbiO

PRK13646

energy-coupling factor transporter ATPase;

20-245

5.04e-22

energy-coupling factor transporter ATPase;

Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 96.39 E-value: 5.04e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEYARVS-GSIRLHGKEllglSDHAMSQIRGRmIGTVFQD 97
Cdd:PRK13646   19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLkPTTGTVTvDDITITHKT----KDKYIRPVRKR-IGMVFQF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  98 PMSALtpvytIGDQIAEAIEIHSRE--ISRADARRRAVELLELVGIaqPERRARAFPHELSGGERQRVVIAIAIANDPDL 175
Cdd:PRK13646   94 PESQL-----FEDTVEREIIFGPKNfkMNLDEVKNYAHRLLMDLGF--SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDI 166

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 176 LICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRD 245
Cdd:PRK13646  167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236

LptB

COG1137

ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ...

22-244

5.69e-22

ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 95.10 E-value: 5.69e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAmsqiRGRM-IG------TV 94
Cdd:COG1137    17 TVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGRIFLDGEDITHLPMHK----RARLgIGylpqeaSI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  95 FQDpmsaLTpvytIGDQIAEAIEIhsREISRADARRRAVELLELVGIaQPERRARAfpHELSGGERQRVVIAIAIANDPD 174
Cdd:COG1137    90 FRK----LT----VEDNILAVLEL--RKLSKKEREERLEELLEEFGI-THLRKSKA--YSLSGGERRRVEIARALATNPK 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 175 LLICDEPTTALD-VTVqAQILDVLRTARDvTGAAVLIITHD----LGVVsefaDRALVMYAGR------PVEIAAvDELY 243
Cdd:COG1137   157 FILLDEPFAGVDpIAV-ADIQKIIRHLKE-RGIGVLITDHNvretLGIC----DRAYIISEGKvlaegtPEEILN-NPLV 229


                  .
gi 1424538268 244 R 244
Cdd:COG1137   230 R 230

ArpD

COG4618

ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ...

11-241

6.79e-22

ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];

Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 99.82 E-value: 6.79e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELlglsDHAMSQIRGRM 90
Cdd:COG4618   335 NLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPP---TAGSVRLDGADL----SQWDREELGRH 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDPmsALTPVyTIGDQIAEAIEIHSREISRAdARRRAV-EL-LEL-------VGiaqpERRARafpheLSGGERQ 161
Cdd:COG4618   408 IGYLPQDV--ELFDG-TIAENIARFGDADPEKVVAA-AKLAGVhEMiLRLpdgydtrIG----EGGAR-----LSGGQRQ 474

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDE 241
Cdd:COG4618   475 RIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKA-RGATVVVITHRPSLLAA-VDKLLVLRDGRVQAFGPRDE 552

PRK09700

D-allose ABC transporter ATP-binding protein AlsA;

21-593

7.41e-22

D-allose ABC transporter ATP-binding protein AlsA;

Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 99.47 E-value: 7.41e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELLGLsDHAMSQIRGrmIGTVFQ---- 96
Cdd:PRK09700   18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI---HEPTKGTITINNINYNKL-DHKLAAQLG--IGIIYQelsv 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  97 -DPMSALTPVYtIGDQIAE---AIEIhsreISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQRVVIAIAIAND 172
Cdd:PRK09700   92 iDELTVLENLY-IGRHLTKkvcGVNI----IDWREMRVRAAMMLLRVGL---KVDLDEKVANLSISHKQMLEIAKTLMLD 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 173 PDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDrrmpytv 252
Cdd:PRK09700  164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND------- 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 253 gllgsvprldaaqgtrlipipgapptmtslspgactfaprcplaideclsaepDLVRVadghwaacirtddVAGRSAADV 332
Cdd:PRK09700  236 -----------------------------------------------------DIVRL-------------MVGRELQNR 249

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 333 FgVSTQPPPNNAAGgqpPVVLRVSDLTKTYRltkgvvvrrrvgevRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILE 412
Cdd:PRK09700  250 F-NAMKENVSNLAH---ETVFEVRNVTSRDR--------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG 311

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 413 LTKPEAGSIEILGTDVAvldaaarrrlrtelqvvfqdPVASLDPRLPVYDVIAEPLRANG-FHRHECEERVA-------- 483
Cdd:PRK09700  312 VDKRAGGEIRLNGKDIS--------------------PRSPLDAVKKGMAYITESRRDNGfFPNFSIAQNMAisrslkdg 371

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 484 ELLAVVGL-DHSDASRYP------------------AEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNL 544
Cdd:PRK09700  372 GYKGAMGLfHEVDEQRTAenqrellalkchsvnqniTELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV 451

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*....
gi 1424538268 545 LLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIveqgesDQVFTN 593
Cdd:PRK09700  452 MRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRL------TQILTN 493

fecE

PRK11231

Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;

5-263

8.55e-22

Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;

Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 95.08 E-value: 8.55e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTaalavigLLPEYARV----SGSIRLHGKELLGLSD 80
Cdd:PRK11231    3 LRTENLTVGYGTKRI----LNDLSLSLPTGKITALIGPNGCGKST-------LLKCFARLltpqSGTVFLGDKPISMLSS 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSqirgRMIGTVFQDPmsaLTPvytigdqiaEAIEIhsREI---------------SRADARR--RAVELLELVGIAq 143
Cdd:PRK11231   72 RQLA----RRLALLPQHH---LTP---------EGITV--RELvaygrspwlslwgrlSAEDNARvnQAMEQTRINHLA- 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 144 pERRARafphELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFAD 223
Cdd:PRK11231  133 -DRRLT----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCD 206

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1424538268 224 RALVMYAGRPVEIAAVDELyrdrrmpYTVGLLGSVPRLDA 263
Cdd:PRK11231  207 HLVVLANGHVMAQGTPEEV-------MTPGLLRTVFDVEA 239

PRK14267

phosphate ABC transporter ATP-binding protein; Provisional

1-256

9.24e-22

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 94.91 E-value: 9.24e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGL--LPEYARVSGSIRLHGKELLGL 78
Cdd:PRK14267    1 MKFAIETVNLRVYYGSNHV----IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLleLNEEARVEGEVRLFGRNIYSP 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  79 SDHAMsQIRgRMIGTVFQDPMSalTPVYTIGDQIAEAIEIHSREISRADARRRAVELLELVGI-AQPERRARAFPHELSG 157
Cdd:PRK14267   77 DVDPI-EVR-REVGMVFQYPNP--FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALwDEVKDRLNDYPSNLSG 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVL-RTARDVTgaaVLIITHDLGVVSEFADRALVMYAGRPVEI 236
Cdd:PRK14267  153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLfELKKEYT---IVLVTHSPAQAARVSDYVAFLYLGKLIEV 229

                         250       260
                  ....*....|....*....|....
gi 1424538268 237 AAVDELYRDRRMP----YTVGLLG 256
Cdd:PRK14267  230 GPTRKVFENPEHEltekYVTGALG 253

ABCG_White

cd03234

White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ...

17-234

9.27e-22

White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.

Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 94.26 E-value: 9.27e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  17 EDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKELlglSDHAMSQIrgrmIGTVFQ 96
Cdd:cd03234    16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR---KPDQFQKC----VAYVRQ 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  97 DpmSALTPVYTIGDQIAEAIEIHSREISRaDARRR---AVELLELVGIaqpERRARAFPHELSGGERQRVVIAIAIANDP 173
Cdd:cd03234    89 D--DILLPGLTVRETLTYTAILRLPRKSS-DAIRKkrvEDVLLRDLAL---TRIGGNLVKGISGGERRRVSIAVQLLWDP 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 174 DLLICDEPTTALDVTVQAQILDVLR-TARdvTGAAVLIITHDLGV-VSEFADRALVMYAGRPV 234
Cdd:cd03234   163 KVLILDEPTSGLDSFTALNLVSTLSqLAR--RNRIVILTIHQPRSdLFRLFDRILLLSSGEIV 223

PRK13537

nodulation factor ABC transporter ATP-binding protein NodI;

1-242

1.06e-21

nodulation factor ABC transporter ATP-binding protein NodI;

Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 96.03 E-value: 1.06e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLpeyARVSGSIRLHGKELLGLSD 80
Cdd:PRK13537    4 SVAPIDFRNVEKRYG----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT---HPDAGSISLCGEPVPSRAR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAmsqiRGRmIGTVFQdpMSALTPVYTIgdqiAEAIEIHSRE--ISRADARRRAVELLELvgiAQPERRARAFPHELSGG 158
Cdd:PRK13537   77 HA----RQR-VGVVPQ--FDNLDPDFTV----RENLLVFGRYfgLSAAAARALVPPLLEF---AKLENKADAKVGELSGG 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT--ARdvtGAAVLIITHDLGVVSEFADRALVMYAGRPVEI 236
Cdd:PRK13537  143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSllAR---GKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219


                  ....*.
gi 1424538268 237 AAVDEL 242
Cdd:PRK13537  220 GAPHAL 225

ABCC_Protease_Secretion

cd03246

ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ...

381-581

1.07e-21

Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 92.28 E-value: 1.07e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrteLQVVFQDpvaslDPRLPv 460
Cdd:cd03246    19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH---VGYLPQD-----DELFS- 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 yDVIAEPLrangfhrheceervaellavvgldhsdasrypaeFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03246    90 -GSIAENI----------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1424538268 541 IVNLLLDLQRRfGLSYLFVSHDLSVVKhLAHRVAVMYRGMI 581
Cdd:cd03246   135 LNQAIAALKAA-GATRIVIAHRPETLA-SADRILVLEDGRV 173

thiQ

TIGR01277

thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ...

384-585

1.17e-21

thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]

Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 93.77 E-value: 1.17e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 384 SFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIlgTDVAVLDAAARRRlrtELQVVFQDpvASLDPRLPVYDV 463
Cdd:TIGR01277  18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV--NDQSHTGLAPYQR---PVSMLFQE--NNLFAHLTVRQN 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 464 IAEPLRANGFHRHECEERVAELLAVVGLDHSDAsRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVN 543
Cdd:TIGR01277  91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1424538268 544 LLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:TIGR01277 170 LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211

ABCC_bacteriocin_exporters

cd03245

ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ...

381-585

1.33e-21

Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 93.42 E-value: 1.33e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtELQVVFQDPVasldprlpv 460
Cdd:cd03245    21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR---NIGYVPQDVT--------- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 ydVIAEPLRAN--GFHRHECEERVAELLAVVGLDhSDASRYPAEF-----------SGGQKQRIGIARALALQPKILALD 527
Cdd:cd03245    89 --LFYGTLRDNitLGAPLADDERILRAAELAGVT-DFVNKHPNGLdlqigergrglSGGQRQAVALARALLNDPPILLLD 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 528 EPVSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKhLAHRVAVMYRGMIVEQG 585
Cdd:cd03245   166 EPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD-LVDRIIVMDSGRIVADG 220

ABC_Carb_Monos_II

cd03215

Second domain of the ATP-binding cassette component of monosaccharide transport system; This ...

350-581

1.42e-21

Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 92.50 E-value: 1.42e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 350 PVVLRVSDLTKTYRLtkgvvvrrrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVA 429
Cdd:cd03215     2 EPVLEVRGLSVKGAV----------------RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 430 VLDAAARRRLRteLQVVFQDP-VASLDPRLPVYDVIAeplrangfhrheceerVAELLavvgldhsdasrypaefSGGQK 508
Cdd:cd03215    66 RRSPRDAIRAG--IAYVPEDRkREGLVLDLSVAENIA----------------LSSLL-----------------SGGNQ 110

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 509 QRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:cd03215   111 QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182

ABC_FeS_Assembly

cd03217

ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ...

5-244

1.56e-21

ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 92.98 E-value: 1.56e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVtfETEDIEVpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlPEYARVSGSIRLHGKELLGLSDHAms 84
Cdd:cd03217     1 LEIKDLHV--SVGGKEI--LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PKYEVTEGEILFKGEDITDLPPEE-- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qiRGRM-IGTVFQDPmsaltpvytigdqiaeaIEIHsreisradarrrAVELLELVgiaqperraRAFPHELSGGERQRV 163
Cdd:cd03217    74 --RARLgIFLAFQYP-----------------PEIP------------GVKNADFL---------RYVNEGFSGGEKKRN 113

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 164 VIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVtGAAVLIITHdLGVVSEF--ADRALVMYAGR-----PVEI 236
Cdd:cd03217   114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITH-YQRLLDYikPDRVHVLYDGRivksgDKEL 191


                  ....*...
gi 1424538268 237 AavDELYR 244
Cdd:cd03217   192 A--LEIEK 197

PRK10247

putative ABC transporter ATP-binding protein YbbL; Provisional

381-568

1.57e-21

putative ABC transporter ATP-binding protein YbbL; Provisional

Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 93.63 E-value: 1.57e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtelQV--VFQDPVASLDPrl 458
Cdd:PRK10247   24 NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ-----QVsyCAQTPTLFGDT-- 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 pVYDVIAEP--LRangfHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK10247   97 -VYDNLIFPwqIR----NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKH 568
Cdd:PRK10247  172 NKHNVNEIIHRYVREQNIAVLWVTHDKDEINH 203

BtuD

COG4138

ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ...

382-592

1.60e-21

ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];

Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 94.14 E-value: 1.60e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTkPEAGSIEILGTDVAVLDAAARRRLRTEL--QvvfQDPVASLdprlP 459
Cdd:COG4138    14 PISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAELARHRAYLsqQ---QSPPFAM----P 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIAEPLRANGfHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALaLQ--------PKILALDEPVS 531
Cdd:COG4138    86 VFQYLALHQPAGA-SSEAVEQLLAQLAEALGLE-DKLSRPLTQLSGGEWQRVRLAAVL-LQvwptinpeGQLLLLDEPMN 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 532 ALDVSIQAgivnLLLDLQRRF---GLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:COG4138   163 SLDVAQQA----ALDRLLRELcqqGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMT 222

ABC_NatA_like

cd03267

ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ...

14-232

1.85e-21

Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 93.55 E-value: 1.85e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  14 FETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHG-------KELLglsdhamsq 85
Cdd:cd03267    27 FKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLqPT----SGEVRVAGlvpwkrrKKFL--------- 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  86 irgRMIGTVF--QDPMSALTPVytigdqiAEAIEIHSR--EISRADARRRAVELLELVGIA----QPERRarafpheLSG 157
Cdd:cd03267    94 ---RRIGVVFgqKTQLWWDLPV-------IDSFYLLAAiyDLPPARFKKRLDELSELLDLEelldTPVRQ-------LSL 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03267   157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231

cbiO

PRK13648

cobalt transporter ATP-binding subunit; Provisional

11-254

2.15e-21

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 94.43 E-value: 2.15e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpEYARvSGSIRLhgkELLGLSDHAMSQIRgRM 90
Cdd:PRK13648   12 NVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI--EKVK-SGEIFY---NNQAITDDNFEKLR-KH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDPMSALTPVyTIGDQIAEAIEIHSreISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIA 170
Cdd:PRK13648   85 IGIVFQNPDNQFVGS-IVKYDVAFGLENHA--VPYDEMHRRVSEALKQVDMLE---RADYEPNALSGGQKQRVAIAGVLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 171 NDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDELYRDRRMPY 250
Cdd:PRK13648  159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELT 237


                  ....
gi 1424538268 251 TVGL 254
Cdd:PRK13648  238 RIGL 241

PRK10762

D-ribose transporter ATP binding protein; Provisional

1-614

2.16e-21

D-ribose transporter ATP binding protein; Provisional

Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 97.77 E-value: 2.16e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELlGLSD 80
Cdd:PRK10762    1 MQALLQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI---YTRDAGSILYLGKEV-TFNG 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGrmIGTVFQDpmSALTPVYTIGDQIAEAIEIHSR--EISRADARRRAVELLELVGIAQPERRARAfphELSGG 158
Cdd:PRK10762   73 PKSSQEAG--IGIIHQE--LNLIPQLTIAENIFLGREFVNRfgRIDWKKMYAEADKLLARLNLRFSSDKLVG---ELSIG 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAA 238
Cdd:PRK10762  146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 239 VDELYRDRRMPYTVG--LLGSVPRLDAAQGtrlipipgapptmtslspgactfaprcplaideclsaepdlvrvadghwa 316
Cdd:PRK10762  225 VADLTEDSLIEMMVGrkLEDQYPRLDKAPG-------------------------------------------------- 254

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 317 acirtddvagrsaadvfgvstqpppnnaaggqpPVVLRVSDLTktyrltkgvvvrrrvgeVRAVDGISFTLEQGRTLGIV 396
Cdd:PRK10762  255 ---------------------------------EVRLKVDNLS-----------------GPGVNDVSFTLRKGEILGVS 284

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 397 GESGSGKsTTLNQILELTKP-EAGSIEILGTDVAVL---DAAA---------RRR--LRTELQVVFQDPVASLDprlpvy 461
Cdd:PRK10762  285 GLMGAGR-TELMKVLYGALPrTSGYVTLDGHEVVTRspqDGLAngivyisedRKRdgLVLGMSVKENMSLTALR------ 357

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 dviaEPLRANGFHRHECE-ERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:PRK10762  358 ----YFSRAGGSLKHADEqQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKE 433

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 541 IVNLLldlqRRF---GLSYLFVSHDLSVVKHLAHRVAVMYRGMIveQGEsdqvFTNPQHEYTRRLLAAVPRAHSDVA 614
Cdd:PRK10762  434 IYQLI----NQFkaeGLSIILVSSEMPEVLGMSDRILVMHEGRI--SGE----FTREQATQEKLMAAAVGKLNRVNQ 500

livG

PRK11300

leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

381-594

2.21e-21

leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 93.90 E-value: 2.21e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL--DAAARR---------RLRTELQVVFQD 449
Cdd:PRK11300   22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLpgHQIARMgvvrtfqhvRLFREMTVIENL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 450 PVASldPRLPVYDVIAEPLRANGFHRHECE--ERVAELLAVVGLdHSDASRYPAEFSGGQKQRIGIARALALQPKILALD 527
Cdd:PRK11300  102 LVAQ--HQQLKTGLFSGLLKTPAFRRAESEalDRAATWLERVGL-LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 528 EPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNP 594
Cdd:PRK11300  179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245

MglA

COG1129

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];

4-242

2.30e-21

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];

Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 97.78 E-value: 2.30e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTfetedievPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLS-DHA 82
Cdd:COG1129   256 VLEVEGLSVG--------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADP---ADSGEIRLDGKPVRIRSpRDA 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSQirGrmIGTVFQD--------PMSaltpvytigdqIAE-----AIEIHSRE--ISRADARRRAVELLELVGI--AQPE 145
Cdd:COG1129   325 IRA--G--IAYVPEDrkgeglvlDLS-----------IREnitlaSLDRLSRGglLDRRRERALAEEYIKRLRIktPSPE 389

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 146 RRARafphELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRA 225
Cdd:COG1129   390 QPVG----NLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAVIVISSELPELLGLSDRI 464

                         250
                  ....*....|....*..
gi 1424538268 226 LVMYAGRPVEIAAVDEL 242
Cdd:COG1129   465 LVMREGRIVGELDREEA 481

PhnK

COG1101

ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...

381-582

2.47e-21

ABC-type uncharacterized transport system, ATPase component [General function prediction only];

Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 94.00 E-value: 2.47e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRL--RtelqvVFQDPVASLDPRL 458
Cdd:COG1101    23 DGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKYigR-----VFQDPMMGTAPSM 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 pvydVIAEPL-------RANGFHR---HECEERVAELLAVVGL---DHSDAsryPAEF-SGGQKQrigiarALAL----- 519
Cdd:COG1101    98 ----TIEENLalayrrgKRRGLRRgltKKRRELFRELLATLGLgleNRLDT---KVGLlSGGQRQ------ALSLlmatl 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 520 -QPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIV 582
Cdd:COG1101   165 tKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228

PRK15439

autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

1-593

2.65e-21

autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 97.43 E-value: 2.65e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSD 80
Cdd:PRK15439    8 APPLLCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 ---HAMSqirgrmIGTVFQDPMsaLTPVYTIGDQIAEAIEIHsreisrADARRRAVELLELVGIA-QPERRARAfpheLS 156
Cdd:PRK15439   81 akaHQLG------IYLVPQEPL--LFPNLSVKENILFGLPKR------QASMQKMKQLLAALGCQlDLDSSAGS----LE 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGrpvei 236
Cdd:PRK15439  143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDG----- 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 237 aavdelyrdrrmpyTVGLLGSVPRLDAAQgtrlipipgappTMTSLSPGActfaprcplaIDECLSAEPDLvrvadghWA 316
Cdd:PRK15439  217 --------------TIALSGKTADLSTDD------------IIQAITPAA----------REKSLSASQKL-------WL 253

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 317 ACirtddvagrsaadvfgvstqppPNN---AAGGQPpvVLRVSDLTktyrltkgvvvrrrvgevraVDG---ISFTLEQG 390
Cdd:PRK15439  254 EL----------------------PGNrrqQAAGAP--VLTVEDLT--------------------GEGfrnISLEVRAG 289

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 391 RTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARrrLRTELQVVFQDPVAS---LDPRLpVYDVIAEP 467
Cdd:PRK15439  290 EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR--LARGLVYLPEDRQSSglyLDAPL-AWNVCALT 366

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 468 LRANGFHRHECEER--VAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLL 545
Cdd:PRK15439  367 HNRRGFWIKPARENavLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLI 446

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*...
gi 1424538268 546 LDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PRK15439  447 RSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493

cbiO

PRK13634

cobalt transporter ATP-binding subunit; Provisional

31-246

2.82e-21

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 94.32 E-value: 2.82e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAALAVIGLL-PeyarVSGSIRLhGKELL--GLSDHAMSQIRgRMIGTVFQDPMSALtpvyt 107
Cdd:PRK13634   30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLqP----TSGTVTI-GERVItaGKKNKKLKPLR-KKVGIVFQFPEHQL----- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 108 igdqIAEAIEihsREI---------SRADARRRAVELLELVGIAqPERRARAfPHELSGGERQRVVIAIAIANDPDLLIC 178
Cdd:PRK13634   99 ----FEETVE---KDIcfgpmnfgvSEEDAKQKAREMIELVGLP-EELLARS-PFELSGGQMRRVAIAGVLAMEPEVLVL 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 179 DEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDR 246
Cdd:PRK13634  170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237

PRK14247

phosphate ABC transporter ATP-binding protein; Provisional

3-251

4.06e-21

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 93.05 E-value: 4.06e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFEteDIEVpaVRGTSYHIDPGEVLAIVGESGCGKTTAALA---VIGLLPEyARVSGSIRLHGKELLGLS 79
Cdd:PRK14247    2 NKIEIRDLKVSFG--QVEV--LDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrLIELYPE-ARVSGEVYLDGQDIFKMD 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 dhaMSQIRgRMIGTVFQDPMSalTPVYTIGDQIAEAIEIHSREISRADARRRAVELLELVGI-AQPERRARAFPHELSGG 158
Cdd:PRK14247   77 ---VIELR-RRVQMVFQIPNP--IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLwDEVKDRLDAPAGKLSGG 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDV-LRTARDVTgaaVLIITHDLGVVSEFADRALVMYAGRPVEIA 237
Cdd:PRK14247  151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLfLELKKDMT---IVLVTHFPQQAARISDYVAFLYKGQIVEWG 227

                         250
                  ....*....|....
gi 1424538268 238 AVDELYRDRRMPYT 251
Cdd:PRK14247  228 PTREVFTNPRHELT 241

btuD

PRK09536

corrinoid ABC transporter ATPase; Reviewed

5-284

4.59e-21

corrinoid ABC transporter ATPase; Reviewed

Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 95.68 E-value: 4.59e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGLSDHAMS 84
Cdd:PRK09536    4 IDVSDLSVEFG----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARAAS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qirgRMIGTVFQDpmSALTPVYTIGDQIAEAIEIHSREISRAD-ARRRAVE-LLELVGIAQPERRARAfphELSGGERQR 162
Cdd:PRK09536   77 ----RRVASVPQD--TSLSFEFDVRQVVEMGRTPHRSRFDTWTeTDRAAVErAMERTGVAQFADRPVT---SLSGGERQR 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMY------AGRPVEI 236
Cdd:PRK09536  148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLAdgrvraAGPPADV 226

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1424538268 237 AAVDELyRDRRMPYTVglLGSVPRLDAAQGTrliPIPGAPPTMTSLSP 284
Cdd:PRK09536  227 LTADTL-RAAFDARTA--VGTDPATGAPTVT---PLPDPDRTEAAADT 268

ABC_drug_resistance_like

cd03264

ABC-type multidrug transport system, ATPase component; The biological function of this family ...

23-232

4.75e-21

Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 91.87 E-value: 4.75e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  23 AVRGTSYHIDPGeVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGlsdhAMSQIRgRMIGTVFQDPMsaL 102
Cdd:cd03264    15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIRIDGQDVLK----QPQKLR-RRIGYLPQEFG--V 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 103 TPVYTIGDQIAEAIEIHsrEISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
Cdd:cd03264    84 YPNFTVREFLDYIAWLK--GIPSKEVKARVDEVLELVNLGD---RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 183 TALDVTVQAQILDVL-RTARDVTgaaVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03264   159 AGLDPEERIRFRNLLsELGEDRI---VILSTHIVEDVESLCNQVAVLNKGK 206

ABCC_cytochrome_bd

cd03247

ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ...

381-585

4.86e-21

ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 90.84 E-value: 4.86e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAarrrLRTELQVVFQDPVasldprlpv 460
Cdd:cd03247    19 KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKA----LSSLISVLNQRPY--------- 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 ydVIAEPLRANgfhrheceervaellavVGldhsdasrypAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03247    86 --LFDTTLRNN-----------------LG----------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ 136

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424538268 541 IVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQG 585
Cdd:cd03247   137 LLSLIFEVLK--DKTLIWITHHLTGIEH-MDKILFLENGKIIMQG 178

cbiO

PRK13638

energy-coupling factor ABC transporter ATP-binding protein;

382-591

5.34e-21

energy-coupling factor ABC transporter ATP-binding protein;

Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 93.15 E-value: 5.34e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTdvaVLDAAAR--RRLRTELQVVFQDPvaslDPRLP 459
Cdd:PRK13638   19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK---PLDYSKRglLALRQQVATVFQDP----EQQIF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDV---IAEPLRANGFHRHECEERVAELLAVVgldhsDASRYPAE----FSGGQKQRIGIARALALQPKILALDEPVSA 532
Cdd:PRK13638   92 YTDIdsdIAFSLRNLGVPEAEITRRVDEALTLV-----DAQHFRHQpiqcLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 533 LDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVF 591
Cdd:PRK13638  167 LDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224

PRK13536

nodulation factor ABC transporter ATP-binding protein NodI;

342-585

6.93e-21

nodulation factor ABC transporter ATP-binding protein NodI;

Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 94.13 E-value: 6.93e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 342 NNAAGGQPPVVLRVSDLTKTYRltkgvvvrrrvgEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSI 421
Cdd:PRK13536   31 ASIPGSMSTVAIDLAGVSKSYG------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 422 EILGTDVAVLDAAARRRlrteLQVVFQdpVASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRYPA 501
Cdd:PRK13536   99 TVLGVPVPARARLARAR----IGVVPQ--FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVS 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 502 EFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMI 581
Cdd:PRK13536  172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRK 250


                  ....
gi 1424538268 582 VEQG 585
Cdd:PRK13536  251 IAEG 254

LptB

COG1137

ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ...

352-595

9.60e-21

ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 91.63 E-value: 9.60e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVL 431
Cdd:COG1137     3 TLEAENLVKSYGKRT------------VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHL 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 432 DAAARRR-----LRTElqvvfqdpvASLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGG 506
Cdd:COG1137    71 PMHKRARlgigyLPQE---------ASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHL-RKSKAYSLSGG 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 507 QKQRIGIARALALQPKILALDEPVSALD-VSIqAGIVNLLLDLQRRfGLSYLFVSHD----LSVVkhlaHRVAVMYRGMI 581
Cdd:COG1137   141 ERRRVEIARALATNPKFILLDEPFAGVDpIAV-ADIQKIIRHLKER-GIGVLITDHNvretLGIC----DRAYIISEGKV 214

                         250
                  ....*....|....
gi 1424538268 582 VEQGESDQVFTNPQ 595
Cdd:COG1137   215 LAEGTPEEILNNPL 228

PRK14271

phosphate ABC transporter ATP-binding protein; Provisional

381-616

1.03e-20

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 92.47 E-value: 1.03e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAG---SIEILGTDVAVLDAAARRRLRTELQVVFQDPvaslDP- 456
Cdd:PRK14271   38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrySGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP----NPf 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RLPVYDVIAEPLRANGF-HRHECEERVAELLAVVGLDHSDASRY---PAEFSGGQKQRIGIARALALQPKILALDEPVSA 532
Cdd:PRK14271  114 PMSIMDNVLAGVRAHKLvPRKEFRGVAQARLTEVGLWDAVKDRLsdsPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 533 LDVSIQAGIVNLLLDLQRRfgLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVPRAHSD 612
Cdd:PRK14271  194 LDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLSGDVKD 271


                  ....
gi 1424538268 613 VASG 616
Cdd:PRK14271  272 AKRG 275

COG4586

ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...

20-274

1.06e-20

ABC-type uncharacterized transport system, ATPase component [General function prediction only];

Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 93.23 E-value: 1.06e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAalavI----GLL-PEyarvSGSIRLHG-------KELLglsdhamsqir 87
Cdd:COG4586    34 EVEAVDDISFTIEPGEIVGFIGPNGAGKSTT----IkmltGILvPT----SGEVRVLGyvpfkrrKEFA----------- 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  88 gRMIGTVF-Q------DpmsaLTPVytigdqiaEAIEIHSR--EISRADARRRAVELLELVGIA----QPERrarafphE 154
Cdd:COG4586    95 -RRIGVVFgQrsqlwwD----LPAI--------DSFRLLKAiyRIPDAEYKKRLDELVELLDLGelldTPVR-------Q 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 LSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:COG4586   155 LSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRII 234

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1424538268 235 EIAAVDELyRDRRMPY---TVGLLGSVPRLDAAQGTRLIPIPG 274
Cdd:COG4586   235 YDGSLEEL-KERFGPYktiVLELAEPVPPLELPRGGEVIEREG 276

PRK13537

nodulation factor ABC transporter ATP-binding protein NodI;

381-585

1.16e-20

nodulation factor ABC transporter ATP-binding protein NodI;

Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 92.95 E-value: 1.16e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavldAAARRRLRTELQVVFQdpVASLDPRLPV 460
Cdd:PRK13537   24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV----PSRARHARQRVGVVPQ--FDNLDPDFTV 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:PRK13537   98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424538268 541 IVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:PRK13537  177 MWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220

CydD

TIGR02857

thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ...

328-576

1.17e-20

Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 95.82 E-value: 1.17e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 328 SAADVFGV---STQPPPNNA-AGGQPPVVLRVSDLTKTYRLTkgvvvrrrvgeVRAVDGISFTLEQGRTLGIVGESGSGK 403
Cdd:TIGR02857 293 AAEALFAVldaAPRPLAGKApVTAAPASSLEFSGVSVAYPGR-----------RPALRPVSFTVPPGERVALVGPSGAGK 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 404 STTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrtELQVVFQDPVAsldprlpVYDVIAEPLRangFHRHEC-EERV 482
Cdd:TIGR02857 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD---QIAWVPQHPFL-------FAGTIAENIR---LARPDAsDAEI 428

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 483 AELLAVVGLD----------HSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRrf 552
Cdd:TIGR02857 429 REALERAGLDefvaalpqglDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-- 506

                         250       260
                  ....*....|....*....|....
gi 1424538268 553 GLSYLFVSHDLSVVkHLAHRVAVM 576
Cdd:TIGR02857 507 GRTVLLVTHRLALA-ALADRIVVL 529

LPS_export_lptB

TIGR04406

LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ...

22-243

1.61e-20

LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]

Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 90.80 E-value: 1.61e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSDHamsqIRGRM-IGTVFQDPms 100
Cdd:TIGR04406  15 KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVR---PDAGKILIDGQDITHLPMH----ERARLgIGYLPQEA-- 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 ALTPVYTIGDQIAEAIEIhSREISRADARRRAVELLELVGIAQpERRARAFphELSGGERQRVVIAIAIANDPDLLICDE 180
Cdd:TIGR04406  86 SIFRKLTVEENIMAVLEI-RKDLDRAEREERLEALLEEFQISH-LRDNKAM--SLSGGERRRVEIARALATNPKFILLDE 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 181 PTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR------PVEIAA---VDELY 243
Cdd:TIGR04406 162 PFAGVDPIAVGDIKKIIKHLKE-RGIGVLITDHNVRETLDICDRAYIISDGKvlaegtPAEIVAnekVRRVY 232

type_I_sec_PrtD

TIGR01842

type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ...

382-592

2.57e-20

type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]

Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 94.72 E-value: 2.57e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDaaaRRRLRTELQVVFQD----------PV 451
Cdd:TIGR01842 336 GISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD---RETFGKHIGYLPQDvelfpgtvaeNI 412

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 452 ASLDpRLPVYDVIAEPLRANGFHrheceervaELLAVV--GLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:TIGR01842 413 ARFG-ENADPEKIIEAAKLAGVH---------ELILRLpdGYD-TVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEP 481

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 530 VSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKhLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:TIGR01842 482 NSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVLA 542

ABCC_TAP

cd03248

ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ...

382-581

3.40e-20

ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 89.84 E-value: 3.40e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDaaaRRRLRTELQVVFQDPVasLDPRlPVY 461
Cdd:cd03248    32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE---HKYLHSKVSLVGQEPV--LFAR-SLQ 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAEPLRANGFhrheceERVAELlAVVGLDHSDASRYP-----------AEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:cd03248   106 DNIAYGLQSCSF------ECVKEA-AQKAHAHSFISELAsgydtevgekgSQLSGGQKQRVAIARALIRNPQVLILDEAT 178

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 531 SALDVSIQAGIVNLLLD-LQRRfglSYLFVSHDLSVVKHlAHRVAVMYRGMI 581
Cdd:cd03248   179 SALDAESEQQVQQALYDwPERR---TVLVIAHRLSTVER-ADQILVLDGGRI 226

cbiO

PRK13638

energy-coupling factor ABC transporter ATP-binding protein;

4-242

4.53e-20

energy-coupling factor ABC transporter ATP-binding protein;

Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 90.45 E-value: 4.53e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEdievPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELlGLSDHA 82
Cdd:PRK13638    1 MLATSDLWFRYQDE----PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLrPQ----KGAVLWQGKPL-DYSKRG 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSQIRgRMIGTVFQDPMSALtpVYT-IGDQIAeaIEIHSREISRADARRRAVELLELVGiaqperrARAFPHE----LSG 157
Cdd:PRK13638   72 LLALR-QQVATVFQDPEQQI--FYTdIDSDIA--FSLRNLGVPEAEITRRVDEALTLVD-------AQHFRHQpiqcLSH 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRtaRDVT-GAAVLIITHDLGVVSEFAD------RALVMYA 230
Cdd:PRK13638  140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR--RIVAqGNHVIISSHDIDLIYEISDavyvlrQGQILTH 217

                         250
                  ....*....|..
gi 1424538268 231 GRPVEIAAVDEL 242
Cdd:PRK13638  218 GAPGEVFACTEA 229

PRK11176

lipid A ABC transporter ATP-binding protein/permease MsbA;

11-235

6.32e-20

lipid A ABC transporter ATP-binding protein/permease MsbA;

Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 93.54 E-value: 6.32e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAAlaviGLLPEYARV-SGSIRLHGkelLGLSDHAMSQIRgR 89
Cdd:PRK11176  346 NVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA----NLLTRFYDIdEGEILLDG---HDLRDYTLASLR-N 417

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDpmsaltpVYTIGDQIAEAI-----EIHSRE-ISRADARRRAVELLE--------LVGiaqpERRArafphEL 155
Cdd:PRK11176  418 QVALVSQN-------VHLFNDTIANNIayartEQYSREqIEEAARMAYAMDFINkmdngldtVIG----ENGV-----LL 481

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 156 SGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQI---LDVLRTARdvtgaAVLIITHDLGVVsEFADRALVMYAGR 232
Cdd:PRK11176  482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIqaaLDELQKNR-----TSLVIAHRLSTI-EKADEILVVEDGE 555


                  ...
gi 1424538268 233 PVE 235
Cdd:PRK11176  556 IVE 558

PRK11831

phospholipid ABC transporter ATP-binding protein MlaF;

381-596

7.76e-20

phospholipid ABC transporter ATP-binding protein MlaF;

Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 89.82 E-value: 7.76e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLdaaARRRL---RTELQVVFQDpvASLDPR 457
Cdd:PRK11831   24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAM---SRSRLytvRKRMSMLFQS--GALFTD 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 LPVYDVIAEPLRAngfHRHECEE----RVAELLAVVGLdHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:PRK11831   99 MNVFDNVAYPLRE---HTQLPAPllhsTVMMKLEAVGL-RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 534 DVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQH 596
Cdd:PRK11831  175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDP 237

fecE

PRK11231

Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;

381-592

9.99e-20

Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;

Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 88.92 E-value: 9.99e-20

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAaarRRLRTELQVVFQDPVASLDprLPV 460
Cdd:PRK11231   19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS---RQLARRLALLPQHHLTPEG--ITV 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIA---EP-LRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK11231   94 RELVAygrSPwLSLWGRLSAEDNARVNQAMEQTRINHL-ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 537 IQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:PRK11231  173 HQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227

ABC_ThiQ_thiamine_transporter

cd03298

ATP-binding cassette domain of the thiamine transport system; Part of the ...

34-234

1.39e-19

Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 87.55 E-value: 1.39e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  34 GEVLAIVGESGCGKTTAALAVIG-LLPEyarvSGSIRLHGKellglsDHAMSQIRGRMIGTVFQDpmSALTPVYTIGDQI 112
Cdd:cd03298    24 GEITAIVGPSGSGKSTLLNLIAGfETPQ----SGRVLINGV------DVTAAPPADRPVSMLFQE--NNLFAHLTVEQNV 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 113 AEAIEIHSReiSRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQ 192
Cdd:cd03298    92 GLGLSPGLK--LTAEDRQAIEVALARVGLAGLEKR---LPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1424538268 193 ILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:cd03298   167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208

ATM1

COG5265

ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ...

381-585

1.55e-19

ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 92.58 E-value: 1.55e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrLRTELQVVFQDPVAsldprlpV 460
Cdd:COG5265   375 KGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQAS---LRAAIGIVPQDTVL-------F 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRangFHRHECEErvAELLAVVGLDHSDA--SRYPAEF-----------SGGQKQRIGIARALALQPKILALD 527
Cdd:COG5265   445 NDTIAYNIA---YGRPDASE--EEVEAAARAAQIHDfiESLPDGYdtrvgerglklSGGEKQRVAIARTLLKNPPILIFD 519

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 528 EPVSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQG 585
Cdd:COG5265   520 EATSALDSRTERAIQAALREVAR--GRTTLVIAHRLSTIVD-ADEILVLEAGRIVERG 574

livG

PRK11300

leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

1-247

2.34e-19

leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 88.12 E-value: 2.34e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETedieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELLGLSD 80
Cdd:PRK11300    2 SQPLLSVSGLMMRFGG----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF---YKPTGGTILLRGQHIEGLPG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSqirgRMiGTV--FQD-----PMSAL---------------------TPVYtigdqiaeaieihsREiSRADARRRA 132
Cdd:PRK11300   75 HQIA----RM-GVVrtFQHvrlfrEMTVIenllvaqhqqlktglfsgllkTPAF--------------RR-AESEALDRA 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 133 VELLELVGIAQPERRARAfphELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIIT 212
Cdd:PRK11300  135 ATWLERVGLLEHANRQAG---NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1424538268 213 HDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRR 247
Cdd:PRK11300  212 HDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246

ModF

COG1119

ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ...

381-592

2.94e-19

ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];

Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 87.45 E-value: 2.94e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQIL-ELTKPEAGSIEILG-----TDVavldaaarRRLRTELQVVFQDPVASL 454
Cdd:COG1119    20 DDISWTVKPGEHWAILGPNGAGKSTLLSLITgDLPPTYGNDVRLFGerrggEDV--------WELRKRIGLVSPALQLRF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 455 DPRLPVYDVIAEPLRAN-GFHRH---ECEERVAELLAVVGLDHsDASRYPAEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:COG1119    92 PRDETVLDVVLSGFFDSiGLYREptdEQRERARELLELLGLAH-LADRPFGTLSQGEQRRVLIARALVKDPELLILDEPT 170

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:COG1119   171 AGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLT 232

ABCG_EPDR

cd03213

Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ...

3-234

3.22e-19

Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 86.07 E-value: 3.22e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   3 AVLEVTDLNVTFETEDIEV--PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLpEYARVSGSIRLHGKELlglsd 80
Cdd:cd03213     2 VTLSFRNLTVTVKSSPSKSgkQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPL----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 hAMSQIRgRMIGTVFQDPM--SALTpvytigdqIAEAIEIHSreisradarrravellELVGIaqperrarafphelSGG 158
Cdd:cd03213    76 -DKRSFR-KIIGYVPQDDIlhPTLT--------VRETLMFAA----------------KLRGL--------------SGG 115

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDL-GVVSEFADRALVMYAGRPV 234
Cdd:cd03213   116 ERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPsSEIFELFDKLLLLSQGRVI 191

PRK14271

phosphate ABC transporter ATP-binding protein; Provisional

36-266

4.43e-19

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 87.84 E-value: 4.43e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  36 VLAIVGESGCGKTTAALAVIGLLPEYA--RVSGSIRLHGKELLGLSDhaMSQIRgRMIGTVFQDPmsalTPV-YTIGDQI 112
Cdd:PRK14271   49 VTSLMGPTGSGKTTFLRTLNRMNDKVSgyRYSGDVLLGGRSIFNYRD--VLEFR-RRVGMLFQRP----NPFpMSIMDNV 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 113 AEAIEIHsREISRADARRRAVELLELVGIAQPER-RARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQA 191
Cdd:PRK14271  122 LAGVRAH-KLVPRKEFRGVAQARLTEVGLWDAVKdRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 192 QILDVLRTARDVTgaAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMP----YTVGLLGSVPrlDAAQG 266
Cdd:PRK14271  201 KIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAetarYVAGLSGDVK--DAKRG 275

BtuD

COG4138

ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ...

28-232

4.90e-19

ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];

Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 86.82 E-value: 4.90e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarvSGSIRLHGKELLGLSDHAMSQIRGrMIGTvfQDPMSALTPVYt 107
Cdd:COG4138    16 SAQVNAGELIHLIGPNGAGKSTLLARMAGLLPG----QGEILLNGRPLSDWSAAELARHRA-YLSQ--QQSPPFAMPVF- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 108 igdqiaEAIEIHSREISRADARRRAV-ELLELVGIAqpERRARAFpHELSGGERQRVVIAIAI-----ANDPD--LLICD 179
Cdd:COG4138    88 ------QYLALHQPAGASSEAVEQLLaQLAEALGLE--DKLSRPL-TQLSGGEWQRVRLAAVLlqvwpTINPEgqLLLLD 158

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 180 EPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:COG4138   159 EPMNSLDVAQQAALDRLLRELCQ-QGITVVMSSHDLNHTLRHADRVWLLKQGK 210

cbiO

PRK13645

energy-coupling factor transporter ATPase;

20-248

5.03e-19

energy-coupling factor transporter ATPase;

Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 87.76 E-value: 5.03e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLpeyarvsgsIRLHGKELLGlsDHA----MSQIRG-----RM 90
Cdd:PRK13645   23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI---------ISETGQTIVG--DYAipanLKKIKEvkrlrKE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDPMSALTPvYTIGDQIAEAiEIHSREiSRADARRRAVELLELVGIaqPERRARAFPHELSGGERQRVVIAIAIA 170
Cdd:PRK13645   92 IGLVFQFPEYQLFQ-ETIEKDIAFG-PVNLGE-NKQEAYKKVPELLKLVQL--PEDYVKRSPFELSGGQKRRVALAGIIA 166

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 171 NDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRM 248
Cdd:PRK13645  167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQEL 244

ssuB

PRK11247

aliphatic sulfonates transport ATP-binding subunit; Provisional

30-278

5.11e-19

aliphatic sulfonates transport ATP-binding subunit; Provisional

Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 87.04 E-value: 5.11e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  30 HIDPGEVLAIVGESGCGKTTaalaVIGLLPEYARVSGSIRLHGKELLglsDHAMSQIRgrmigTVFQDpmSALTPVYTIG 109
Cdd:PRK11247   34 HIPAGQFVAVVGRSGCGKST----LLRLLAGLETPSAGELLAGTAPL---AEAREDTR-----LMFQD--ARLLPWKKVI 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 110 DQIAEAIeihsreisRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTV 189
Cdd:PRK11247  100 DNVGLGL--------KGQWRDAALQALAAVGLAD---RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 190 QAQILDVLRTARDVTGAAVLIITHDlgvVSE---FADRALVMYAGRPVEIAAVDeLYRDRRmpytvglLGSV--PRLDAA 264
Cdd:PRK11247  169 RIEMQDLIESLWQQHGFTVLLVTHD---VSEavaMADRVLLIEEGKIGLDLTVD-LPRPRR-------RGSArlAELEAE 237

                         250
                  ....*....|....
gi 1424538268 265 QGTRLIPIPGAPPT 278
Cdd:PRK11247  238 VLQRVMSRGESEPT 251

cbiO

PRK13649

energy-coupling factor transporter ATPase;

20-234

5.46e-19

energy-coupling factor transporter ATPase;

Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 87.49 E-value: 5.46e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELLGLSDHA-MSQIRgRMIGTVFQDP 98
Cdd:PRK13649   19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL---HVPTQGSVRVDDTLITSTSKNKdIKQIR-KKVGLVFQFP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  99 MSALTPVYTIGDQiaeAIEIHSREISRADARRRAVELLELVGIAQpERRARAfPHELSGGERQRVVIAIAIANDPDLLIC 178
Cdd:PRK13649   95 ESQLFEETVLKDV---AFGPQNFGVSQEEAEALAREKLALVGISE-SLFEKN-PFELSGGQMRRVAIAGILAMEPKILVL 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 179 DEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:PRK13649  170 DEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224

PRK09984

phosphonate ABC transporter ATP-binding protein;

352-601

6.42e-19

phosphonate ABC transporter ATP-binding protein;

Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 86.99 E-value: 6.42e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 352 VLRVSDLTKTYRLTKGVvvrrrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQILELT---KPEAGSIEILGTDV 428
Cdd:PRK09984    4 IIRVEKLAKTFNQHQAL------------HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGRTV 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 429 AVLDAAAR--RRLRTELQVVFQDpvASLDPRLPVYD-VIAEPLRANGFHR-------HECEERVAELLAVVGLDHSDASR 498
Cdd:PRK09984   72 QREGRLARdiRKSRANTGYIFQQ--FNLVNRLSVLEnVLIGALGSTPFWRtcfswftREQKQRALQALTRVGMVHFAHQR 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 499 YpAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYR 578
Cdd:PRK09984  150 V-STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228

                         250       260
                  ....*....|....*....|...
gi 1424538268 579 GMIVEQGESdQVFTNPQHEYTRR 601
Cdd:PRK09984  229 GHVFYDGSS-QQFDNERFDHLYR 250

PRK11174

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

383-605

7.00e-19

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 90.29 E-value: 7.00e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTkPEAGSIEILGTDVAVLDAAARRRlrtELQVVFQDPvasldpRLPvyd 462
Cdd:PRK11174  369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRK---HLSWVGQNP------QLP--- 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 viAEPLRAN---GFHrHECEERVAELLA-----------VVGLDH--SDASrypAEFSGGQKQRIGIARALALQPKILAL 526
Cdd:PRK11174  436 --HGTLRDNvllGNP-DASDEQLQQALEnawvseflpllPQGLDTpiGDQA---AGLSVGQAQRLALARALLQPCQLLLL 509

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 527 DEPVSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHLaHRVAVMYRGMIVEQGESDQVFTnpQHEYTRRLLAA 605
Cdd:PRK11174  510 DEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQ--AGGLFATLLAH 583

cbiO

PRK13643

energy-coupling factor transporter ATPase;

31-245

7.12e-19

energy-coupling factor transporter ATPase;

Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 87.48 E-value: 7.12e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHAMSQIRGRMIGTVFQDPMSALTPVYTIGD 110
Cdd:PRK13643   29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKD 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 111 QiaeAIEIHSREISRADARRRAVELLELVGIAQpERRARAfPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQ 190
Cdd:PRK13643  106 V---AFGPQNFGIPKEKAEKIAAEKLEMVGLAD-EFWEKS-PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 191 AQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRD 245
Cdd:PRK13643  181 IEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234

PRK11174

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

12-242

9.12e-19

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 89.90 E-value: 9.12e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  12 VTFETEDIEVPAVRGT------SYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeYarvSGSIRLHGKELlglSDHAMSQ 85
Cdd:PRK11174  348 VTIEAEDLEILSPDGKtlagplNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP-Y---QGSLKINGIEL---RELDPES 420

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  86 IRgRMIGTVFQDPmsaLTPVYTIGDQIAEA-IEIHSREISRADARRRAVELLELV--GIAQP--ERRARafpheLSGGER 160
Cdd:PRK11174  421 WR-KHLSWVGQNP---QLPHGTLRDNVLLGnPDASDEQLQQALENAWVSEFLPLLpqGLDTPigDQAAG-----LSVGQA 491

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARdvTGAAVLIITHDLGVVSEFaDRALVMYAGRPVEIAAVD 240
Cdd:PRK11174  492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYA 568


                  ..
gi 1424538268 241 EL 242
Cdd:PRK11174  569 EL 570

PRK11000

maltose/maltodextrin ABC transporter ATP-binding protein MalK;

383-598

1.14e-18

maltose/maltodextrin ABC transporter ATP-binding protein MalK;

Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 88.16 E-value: 1.14e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARrrlrtELQVVFQDpvASLDPRLPVYD 462
Cdd:PRK11000   22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAER-----GVGMVFQS--YALYPHLSVAE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIV 542
Cdd:PRK11000   95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL-LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 543 NLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQHEY 598
Cdd:PRK11000  174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229

Rli1

COG1245

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...

33-575

1.31e-18

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];

Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 89.46 E-value: 1.31e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  33 PGEVLAIVGESGCGKTTAalavIGLLpeyarvSGSIrlhgKELLGLSDHAMS--QIRGRMIGTVFQDPMSAL-----TPV 105
Cdd:COG1245    98 KGKVTGILGPNGIGKSTA----LKIL------SGEL----KPNLGDYDEEPSwdEVLKRFRGTELQDYFKKLangeiKVA 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 106 YTIG--DQIAEAIEIHSREI-SRADARRRAVELLELVGIAQP-ERRARafphELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:COG1245   164 HKPQyvDLIPKVFKGTVRELlEKVDERGKLDELAEKLGLENIlDRDIS----ELSGGELQRVAIAAALLRDADFYFFDEP 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 182 TTALDVTvqaQILDVLRTARDVT--GAAVLIITHDLGVVSEFADRALVMYaGRPveiaavdelyrdrrmpytvGLLGSVP 259
Cdd:COG1245   240 SSYLDIY---QRLNVARLIRELAeeGKYVLVVEHDLAILDYLADYVHILY-GEP-------------------GVYGVVS 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 260 RldaAQGTRlipipgapptmtslspgactfaprcpLAIDECLsaepdlvrvaDGHwaacIRTDDVAGRSAADVFGVSTQP 339
Cdd:COG1245   297 K---PKSVR--------------------------VGINQYL----------DGY----LPEENVRIRDEPIEFEVHAPR 333

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 340 PPNNAaggqpPVVLRVSDLTKTYRltkgvvvrrrvgevravdgiSFTLE-------QGRTLGIVGESGSGKsTTLNQIL- 411
Cdd:COG1245   334 REKEE-----ETLVEYPDLTKSYG--------------------GFSLEveggeirEGEVLGIVGPNGIGK-TTFAKILa 387

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 412 -ELtKPEAGSIEilgTDVAV------LDAAARRRLRTELQVVFQDPVASldprLPVYDVIAEPLRANGFHrhecEERVAE 484
Cdd:COG1245   388 gVL-KPDEGEVD---EDLKIsykpqyISPDYDGTVEEFLRSANTDDFGS----SYYKTEIIKPLGLEKLL----DKNVKD 455

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 485 LlavvgldhsdasrypaefSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLS 564
Cdd:COG1245   456 L------------------SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIY 517

                         570
                  ....*....|.
gi 1424538268 565 VVKHLAHRVAV 575
Cdd:COG1245   518 LIDYISDRLMV 528

PRK15056

manganese/iron ABC transporter ATP-binding protein;

1-231

1.41e-18

manganese/iron ABC transporter ATP-binding protein;

Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 86.09 E-value: 1.41e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIevpAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeyarvsgsIRLHGKELLGLSD 80
Cdd:PRK15056    3 QQAGIVVNDVTVTWRNGHT---ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF----------VRLASGKISILGQ 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEIHSREISRADARRRAVELLELVGIAQPERRARAFpHELSGGER 160
Cdd:PRK15056   70 PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-GELSGGQK 148

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRAlVMYAG 231
Cdd:PRK15056  149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYT-VMVKG 217

PRK14239

phosphate transporter ATP-binding protein; Provisional

1-245

2.53e-18

phosphate transporter ATP-binding protein; Provisional

Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 84.83 E-value: 2.53e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDievpAVRGTSYHIDPGEVLAIVGESGCGKTT--AALAVIG-LLPEYArVSGSIRLHGKELLG 77
Cdd:PRK14239    2 TEPILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTllRSINRMNdLNPEVT-ITGSIVYNGHNIYS 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  78 LSDHAMsQIRgRMIGTVFQDPmsalTPV-YTIGDQIAEAIEIHS-REISRADArrrAVELlELVGIA---QPERRARAFP 152
Cdd:PRK14239   77 PRTDTV-DLR-KEIGMVFQQP----NPFpMSIYENVVYGLRLKGiKDKQVLDE---AVEK-SLKGASiwdEVKDRLHDSA 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 153 HELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:PRK14239  147 LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGD 224

                         250
                  ....*....|...
gi 1424538268 233 PVEIAAVDELYRD 245
Cdd:PRK14239  225 LIEYNDTKQMFMN 237

3a01204

TIGR00955

The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ...

26-242

3.32e-18

The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]

Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 88.57 E-value: 3.32e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  26 GTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKELlglsdhAMSQIRgRMIGTVFQDPMsaLTPV 105
Cdd:TIGR00955  43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI------DAKEMR-AISAYVQQDDL--FIPT 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 106 YTIGDQIAEAIEIHSREISRADARRRAV-ELLELVG--------IAQPERRarafpHELSGGERQRVVIAIAIANDPDLL 176
Cdd:TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVdEVLQALGlrkcantrIGVPGRV-----KGLSGGERKRLAFASELLTDPPLL 188

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 177 ICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254

ABCC_NFT1

cd03369

ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ...

381-585

3.69e-18

ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 83.23 E-value: 3.69e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAaarRRLRTELQVVFQDPV---ASLDPR 457
Cdd:cd03369    25 KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL---EDLRSSLTIIPQDPTlfsGTIRSN 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 LPVYDviaeplrangfhrHECEERVAELLAVvgldhsdaSRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSI 537
Cdd:cd03369   102 LDPFD-------------EYSDEEIYGALRV--------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1424538268 538 QAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHLAhRVAVMYRGMIVEQG 585
Cdd:cd03369   161 DALIQKTIREEFT--NSTILTIAHRLRTIIDYD-KILVMDAGEVKEYD 205

ATM1

COG5265

ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ...

5-235

3.91e-18

ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 87.95 E-value: 3.91e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFE----TEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAA-LavigLLPEYARVSGSIRLHGKELLGLS 79
Cdd:COG5265   351 LVVGGGEVRFEnvsfGYDPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLArL----LFRFYDVTSGRILIDGQDIRDVT 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 DHAmsqIRgRMIGTVFQDPmsaltpVY---TIGDQIAEAieihsreisRADARRRAVEllELVGIAQPERRARAFPH--- 153
Cdd:COG5265   427 QAS---LR-AAIGIVPQDT------VLfndTIAYNIAYG---------RPDASEEEVE--AAARAAQIHDFIESLPDgyd 485

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 154 --------ELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT-ARDVTgaaVLIITHDLGVVSEfADR 224
Cdd:COG5265   486 trvgerglKLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREvARGRT---TLVIAHRLSTIVD-ADE 561

                         250
                  ....*....|.
gi 1424538268 225 ALVMYAGRPVE 235
Cdd:COG5265   562 ILVLEAGRIVE 572

cbiO

PRK13652

cobalt transporter ATP-binding subunit; Provisional

4-261

4.18e-18

cobalt transporter ATP-binding subunit; Provisional

Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 84.85 E-value: 4.18e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEdieVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKEllgLSDHAM 83
Cdd:PRK13652    3 LIETRDLCYSYSGS---KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEP---ITKENI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRgRMIGTVFQDPmsaltpvytiGDQIAE-------AIEIHSREISRADARRRAVELLELVGIAQPERRArafPHELS 156
Cdd:PRK13652   74 REVR-KFVGLVFQNP----------DDQIFSptveqdiAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV---PHHLS 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEI 236
Cdd:PRK13652  140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219

                         250       260
                  ....*....|....*....|....*.
gi 1424538268 237 AAVDELYRDRRMPYTVGL-LGSVPRL 261
Cdd:PRK13652  220 GTVEEIFLQPDLLARVHLdLPSLPKL 245

xylG

TIGR02633

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...

21-579

4.44e-18

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]

Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 87.57 E-value: 4.44e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeYARVSGSIRLHGKELLGLSdhaMSQIRGRMIGTVFQDPMs 100
Cdd:TIGR02633  14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASN---IRDTERAGIVIIHQELT- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 aLTPVYTIGDQIAEAIEI-HSREISRADAR-RRAVELLELVGI-AQPERRARAfphELSGGERQRVVIAIAIANDPDLLI 177
Cdd:TIGR02633  89 -LVPELSVAENIFLGNEItLPGGRMAYNAMyLRAKNLLRELQLdADNVTRPVG---DYGGGQQQLVEIAKALNKQARLLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 178 CDEPTTALDVTVQAQILDVLRTARdVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGllgs 257
Cdd:TIGR02633 165 LDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVG---- 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 258 vprldaaqgtrlipipgapPTMTSLSpgactfaPRCPLAI-DECLSAEpdlvrvadghwaacirtddvagrsaadvfGVS 336
Cdd:TIGR02633 240 -------------------REITSLY-------PHEPHEIgDVILEAR-----------------------------NLT 264

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 337 TQPPPNnaaggqpPVVLRVSDltktyrltkgvvvrrrvgevravdgISFTLEQGRTLGIVGESGSGKsTTLNQILELTKP 416
Cdd:TIGR02633 265 CWDVIN-------PHRKRVDD-------------------------VSFSLRRGEILGVAGLVGAGR-TELVQALFGAYP 311

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 417 --EAGSIEILGTDVAVLDAAarRRLRTELQVVFQD-------PVASL--DPRLPVYDVIAEPLRANGFHRHECEERVAEL 485
Cdd:TIGR02633 312 gkFEGNVFINGKPVDIRNPA--QAIRAGIAMVPEDrkrhgivPILGVgkNITLSVLKSFCFKMRIDAAAELQIIGSAIQR 389

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 486 LAVvgldHSDASRYP-AEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLS 564
Cdd:TIGR02633 390 LKV----KTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELA 464

                         570
                  ....*....|....*
gi 1424538268 565 VVKHLAHRVAVMYRG 579
Cdd:TIGR02633 465 EVLGLSDRVLVIGEG 479

chvA

TIGR01192

glucan exporter ATP-binding protein; This model describes glucan exporter ATP binding protein ...

11-242

8.16e-18

glucan exporter ATP-binding protein; This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]

Pssm-ID: 130260 [Multi-domain] Cd Length: 585 Bit Score: 87.25 E-value: 8.16e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPE-YARVSGSIRLHGKELLGLSDHAMSqirgR 89
Cdd:TIGR01192 339 HITFEFAN-SSQGVFDVSFEAKAGQTVAIVGPTGAGKTT----LINLLQRvYDPTVGQILIDGIDINTVTRESLR----K 409

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDpmsALTPVYTIGDQIAEAIEIHS-REISRADARRRAVELLE--------LVGiaqpERRARafpheLSGGER 160
Cdd:TIGR01192 410 SIATVFQD---AGLFNRSIRENIRLGREGATdEEVYEAAKAAAAHDFILkrsngydtLVG----ERGNR-----LSGGER 477

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQI---LDVLRTARdvtgaAVLIITHDLGVVSEfADRALVMYAGRPVEIA 237
Cdd:TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVknaIDALRKNR-----TTFIIAHRLSTVRN-ADLVLFLDQGRLIEKG 551


                  ....*
gi 1424538268 238 AVDEL 242
Cdd:TIGR01192 552 SFQEL 556

PRK10895

lipopolysaccharide ABC transporter ATP-binding protein; Provisional

383-595

1.01e-17

lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 83.02 E-value: 1.01e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRlrteLQVVFQDPVASLDPRLPVYD 462
Cdd:PRK10895   22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR----RGIGYLPQEASIFRRLSVYD 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPLRA-NGFHRHECEERVAELLAVVGLDHSDASRYPAeFSGGQKQRIGIARALALQPKILALDEPVSALDvSIQAGI 541
Cdd:PRK10895   98 NLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQS-LSGGERRRVEIARALAANPKFILLDEPFAGVD-PISVID 175

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 542 VNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK10895  176 IKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229

ArpD

COG4618

ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ...

382-591

1.02e-17

ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];

Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 86.73 E-value: 1.02e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRL------RTELqvvFQDPVA--- 452
Cdd:COG4618   350 GVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHigylpqDVEL---FDGTIAeni 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 453 ----SLDPRlpvyDVIAEPLRAnGFHrheceervaELLA--------VVGldhSDASRypaeFSGGQKQRIGIARALALQ 520
Cdd:COG4618   427 arfgDADPE----KVVAAAKLA-GVH---------EMILrlpdgydtRIG---EGGAR----LSGGQRQRIGLARALYGD 485

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 521 PKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVF 591
Cdd:COG4618   486 PRLVVLDEPNSNLDDEGEAALAAAIRALKAR-GATVVVITHRPSLLAA-VDKLLVLRDGRVQAFGPRDEVL 554

PRK11176

lipid A ABC transporter ATP-binding protein/permease MsbA;

383-585

1.04e-17

lipid A ABC transporter ATP-binding protein/permease MsbA;

Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 86.61 E-value: 1.04e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDvavLDAAARRRLRTELQVV------FQDPVAsldp 456
Cdd:PRK11176  362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD---LRDYTLASLRNQVALVsqnvhlFNDTIA---- 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 rlpvyDVIAEPlRANGFHRHECEE--RVAELLAVV-----GLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:PRK11176  435 -----NNIAYA-RTEQYSREQIEEaaRMAYAMDFInkmdnGLD-TVIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 530 VSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQG 585
Cdd:PRK11176  508 TSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEK-ADEILVVEDGEIVERG 560

PRK11160

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

11-242

1.30e-17

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 86.42 E-value: 1.30e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLP-EYARVSGSIRLHGKELlglSDHAMSQIRgR 89
Cdd:PRK11160  343 NVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST----LLQLLTrAWDPQQGEILLNGQPI---ADYSEAALR-Q 414

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 MIGTVFQDpmsaltpVYTIGDQIAEAIEIHSREISraDARRRAVelLELVGIA---QPERRARAFPHE----LSGGERQR 162
Cdd:PRK11160  415 AISVVSQR-------VHLFSATLRDNLLLAAPNAS--DEALIEV--LQQVGLEkllEDDKGLNAWLGEggrqLSGGEQRR 483

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT-ARDVTgaaVLIITHDLGVVSEFaDRALVMYAGRPVEIAAVDE 241
Cdd:PRK11160  484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEhAQNKT---VLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQE 559


                  .
gi 1424538268 242 L 242
Cdd:PRK11160  560 L 560

TagH

COG1134

ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ...

1-241

1.51e-17

ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];

Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 82.44 E-value: 1.51e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTF------------------ETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIG--LLPE 60
Cdd:COG1134     1 MSSMIEVENVSKSYrlyhepsrslkelllrrrRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTL-LKLIAgiLEPT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  61 yarvSGSIRLHGK--ELLGLsdhamsqirgrmiGTVFQDPMSALTPVYTIGdqiaeaiEIHSreISRADARRRAVELLEL 138
Cdd:COG1134    80 ----SGRVEVNGRvsALLEL-------------GAGFHPELTGRENIYLNG-------RLLG--LSRKEIDEKFDEIVEF 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 139 VGIA----QPERRarafpheLSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHD 214
Cdd:COG1134   134 AELGdfidQPVKT-------YSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRE-SGRTVIFVSHS 205

                         250       260
                  ....*....|....*....|....*..
gi 1424538268 215 LGVVSEFADRALVMYAGRPVEIAAVDE 241
Cdd:COG1134   206 MGAVRRLCDRAIWLEKGRLVMDGDPEE 232

PRK14243

phosphate transporter ATP-binding protein; Provisional

7-223

1.60e-17

phosphate transporter ATP-binding protein; Provisional

Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 82.91 E-value: 1.60e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   7 VTDLNVTFETEDIEV-----PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGL--LPEYARVSGSIRLHGKELLGlS 79
Cdd:PRK14243    4 LNGTETVLRTENLNVyygsfLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndLIPGFRVEGKVTFHGKNLYA-P 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 DHAMSQIRgRMIGTVFQDPMSALTPVYtigDQIAEAIEIHSREISRADARRRAVELLELVGIAQPERRARAFphELSGGE 159
Cdd:PRK14243   83 DVDPVEVR-RRIGMVFQKPNPFPKSIY---DNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGL--SLSGGQ 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRT-ARDVTgaaVLIITHDLGVVSEFAD 223
Cdd:PRK14243  157 QQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHElKEQYT---IIIVTHNMQQAARVSD 218

anch_rpt_ABC

TIGR03771

anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ...

31-261

1.67e-17

anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]

Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 81.82 E-value: 1.67e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKEllglsdhamSQIRGRMIGTVFQD-------PMSALT 103
Cdd:TIGR03771   3 ADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGAS---------PGKGWRHIGYVPQRhefawdfPISVAH 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 104 PVYTigdqiAEAIEIHSREISRADARRRAVELLELVGIAQPERRARAfphELSGGERQRVVIAIAIANDPDLLICDEPTT 183
Cdd:TIGR03771  71 TVMS-----GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG---ELSGGQRQRVLVARALATRPSVLLLDEPFT 142

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 184 ALDVTVQAQILDVLrTARDVTGAAVLIITHDLGVVSEFADRaLVMYAGRPVEIAAVDELYRDRRMPYTVGLLGSVPRL 261
Cdd:TIGR03771 143 GLDMPTQELLTELF-IELAGAGTAILMTTHDLAQAMATCDR-VVLLNGRVIADGTPQQLQDPAPWMTTFGVSDSSPLL 218

PRK03695

vitamin B12-transporter ATPase; Provisional

27-232

1.81e-17

vitamin B12-transporter ATPase; Provisional

Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 82.29 E-value: 1.81e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  27 TSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarvSGSIRLHGKELLGLSDHAMSQIRGRMIGtvfQDPMSALTPVY 106
Cdd:PRK03695   15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQ---QQTPPFAMPVF 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 107 tigdqiaEAIEIHSREISRADARRRAV-ELLELVGIAQPERRArafPHELSGGERQRVVIAIAI-----ANDPD--LLIC 178
Cdd:PRK03695   88 -------QYLTLHQPDKTRTEAVASALnEVAEALGLDDKLGRS---VNQLSGGEWQRVRLAAVVlqvwpDINPAgqLLLL 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 179 DEPTTALDVTVQAqILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:PRK03695  158 DEPMNSLDVAQQA-ALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGK 210

ABCC_cytochrome_bd

cd03247

ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ...

11-232

1.85e-17

Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 80.43 E-value: 1.85e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTT-AALAVIGLLPEyarvSGSIRLHGkellglsdhamsqirgr 89
Cdd:cd03247     5 NVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTlLQLLTGDLKPQ----QGEITLDG----------------- 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  90 migtvfqdpmsalTPVYTIGDQIAEAIEIHSREISRADArrravELLELVGIaqperrarafphELSGGERQRVVIAIAI 169
Cdd:cd03247    64 -------------VPVSDLEKALSSLISVLNQRPYLFDT-----TLRNNLGR------------RFSGGERQRLALARIL 113

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 170 ANDPDLLICDEPTTALDVTVQAQILD-VLRTARDVTgaaVLIITHDLGVVsEFADRALVMYAGR 232
Cdd:cd03247   114 LQDAPIVLLDEPTVGLDPITERQLLSlIFEVLKDKT---LIWITHHLTGI-EHMDKILFLENGK 173

COG4586

ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...

381-585

2.87e-17

ABC-type uncharacterized transport system, ATPase component [General function prediction only];

Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 83.21 E-value: 2.87e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDvavlDAAARRRLRTELQVVF----QdpvasLDP 456
Cdd:COG4586    39 DDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYV----PFKRRKEFARRIGVVFgqrsQ-----LWW 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RLPVYDviaeplranGF--HRH-------ECEERVAELLAVVGLDhsdasrypaEF--------SGGQKQRIGIARALAL 519
Cdd:COG4586   110 DLPAID---------SFrlLKAiyripdaEYKKRLDELVELLDLG---------ELldtpvrqlSLGQRMRCELAAALLH 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 520 QPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:COG4586   172 RPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDG 237

PRK13409

ribosome biogenesis/translation initiation ATPase RLI;

33-575

2.92e-17

ribosome biogenesis/translation initiation ATPase RLI;

Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 85.25 E-value: 2.92e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  33 PGEVLAIVGESGCGKTTAalavIGLLpeyarvSGSIRLHgkelLGLSDHAMS--QIRGRMIGTVFQDPMSAL-----TPV 105
Cdd:PRK13409   98 EGKVTGILGPNGIGKTTA----VKIL------SGELIPN----LGDYEEEPSwdEVLKRFRGTELQNYFKKLyngeiKVV 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 106 YTIG--DQIAEAIEIHSREI-SRADARRRAVELLELVGIAQP-ERRARafphELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:PRK13409  164 HKPQyvDLIPKVFKGKVRELlKKVDERGKLDEVVERLGLENIlDRDIS----ELSGGELQRVAIAAALLRDADFYFFDEP 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 182 TTALDVTvqaQILDVLRTARDVT-GAAVLIITHDLGVVSEFADRALVMYaGRPveiaavdelyrdrrmpytvGLLGSV-- 258
Cdd:PRK13409  240 TSYLDIR---QRLNVARLIRELAeGKYVLVVEHDLAVLDYLADNVHIAY-GEP-------------------GAYGVVsk 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 259 PRldaaqGTRlipipgapptmtslspgactfaprcpLAIDECLsaepdlvrvaDGHwaacIRTDDVAGRSAADVFgvSTQ 338
Cdd:PRK13409  297 PK-----GVR--------------------------VGINEYL----------KGY----LPEENMRIRPEPIEF--EER 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 339 PPPNNAAGgqpPVVLRVSDLTKTYRltkgvvvrrrvgevravdgiSFTLE-------QGRTLGIVGESGSGKsTTLNQIL 411
Cdd:PRK13409  330 PPRDESER---ETLVEYPDLTKKLG--------------------DFSLEveggeiyEGEVIGIVGPNGIGK-TTFAKLL 385

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 412 --ELtKPEAGSIEilgtdvavldaaarrrlrTELQVVFQDPVASLDPRLPVYDV---IAEPLRANgFHRHECEER--VAE 484
Cdd:PRK13409  386 agVL-KPDEGEVD------------------PELKISYKPQYIKPDYDGTVEDLlrsITDDLGSS-YYKSEIIKPlqLER 445

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 485 LLavvgldhsdaSRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLS 564
Cdd:PRK13409  446 LL----------DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY 515

                         570
                  ....*....|.
gi 1424538268 565 VVKHLAHRVAV 575
Cdd:PRK13409  516 MIDYISDRLMV 526

PRK10575

Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;

383-590

3.78e-17

Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;

Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 81.76 E-value: 3.78e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrlrtelqvvFQDPVASLDPRLP--- 459
Cdd:PRK10575   30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA-----------FARKVAYLPQQLPaae 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 ---VYDVIA---EPLR-ANGFHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSA 532
Cdd:PRK10575   99 gmtVRELVAigrYPWHgALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 533 LDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQV 590
Cdd:PRK10575  178 LDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235

CeuD

COG4604

ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ...

6-242

4.04e-17

ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];

Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 81.28 E-value: 4.04e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   6 EVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIG-LLPeyaRVSGSIRLHGKELlglsDHAMS 84
Cdd:COG4604     3 EIKNVSKRYGGKVV----LDDVSLTIPKGGITALIGPNGAGKSTL-LSMISrLLP---PDSGEVLVDGLDV----ATTPS 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 QIRGRMIGTVFQDPmsALTPVYTIGDQIAEAIEIHSR-EISRADAR--RRAVELLELVGIAQperrarAFPHELSGGERQ 161
Cdd:COG4604    71 RELAKRLAILRQEN--HINSRLTVRELVAFGRFPYSKgRLTAEDREiiDEAIAYLDLEDLAD------RYLDELSGGQRQ 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDE 241
Cdd:COG4604   143 RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEE 222


                  .
gi 1424538268 242 L 242
Cdd:COG4604   223 I 223

PRK14243

phosphate transporter ATP-binding protein; Provisional

382-600

4.25e-17

phosphate transporter ATP-binding protein; Provisional

Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 81.75 E-value: 4.25e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTL------NQILELTKPEaGSIEILGTDVAVLD---AAARRRLrtelQVVFQDPva 452
Cdd:PRK14243   28 NVWLDIPKNQITAFIGPSGCGKSTILrcfnrlNDLIPGFRVE-GKVTFHGKNLYAPDvdpVEVRRRI----GMVFQKP-- 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 453 slDPrLP--VYDVIAEPLRANGFhRHECEERVAELL--AVVGLDHSDASRYPA-EFSGGQKQRIGIARALALQPKILALD 527
Cdd:PRK14243  101 --NP-FPksIYDNIAYGARINGY-KGDMDELVERSLrqAALWDEVKDKLKQSGlSLSGGQQQRLCIARAIAVQPEVILMD 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 528 EPVSALDVSIQAGIVNLLLDLQRRFglSYLFVSHDLsvvkHLAHRVAVMY-------------RGMIVEQGESDQVFTNP 594
Cdd:PRK14243  177 EPCSALDPISTLRIEELMHELKEQY--TIIIVTHNM----QQAARVSDMTaffnveltegggrYGYLVEFDRTEKIFNSP 250


                  ....*.
gi 1424538268 595 QHEYTR 600
Cdd:PRK14243  251 QQQATR 256

PRK03695

vitamin B12-transporter ATPase; Provisional

383-595

4.33e-17

vitamin B12-transporter ATPase; Provisional

Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 81.13 E-value: 4.33e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTkPEAGSIEILGTDVAVLDAA--ARRRLRTELQvvfQDPVASLdprlPV 460
Cdd:PRK03695   15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAelARHRAYLSQQ---QTPPFAM----PV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGfHRHECEERVAELLAVVGLDhSDASRYPAEFSGGQKQRIGIA-------RALALQPKILALDEPVSAL 533
Cdd:PRK03695   87 FQYLTLHQPDKT-RTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAavvlqvwPDINPAGQLLLLDEPMNSL 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 534 DVSiQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNPQ 595
Cdd:PRK03695  165 DVA-QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225

type_I_sec_PrtD

TIGR01842

type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ...

11-232

4.45e-17

Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 84.71 E-value: 4.45e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELlglsDHAMSQIRGRM 90
Cdd:TIGR01842 321 NVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP---TSGSVRLDGADL----KQWDRETFGKH 393

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDpmsaltpVYTIGDQIAEaieihsrEISRADARRRAVELLELVGIAQPERRARAFPH-----------ELSGGE 159
Cdd:TIGR01842 394 IGYLPQD-------VELFPGTVAE-------NIARFGENADPEKIIEAAKLAGVHELILRLPDgydtvigpggaTLSGGQ 459

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 160 RQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARdVTGAAVLIITHDLGVVsEFADRALVMYAGR 232
Cdd:TIGR01842 460 RQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRPSLL-GCVDKILVLQDGR 530

ABCC_MRP_domain2

cd03244

ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ...

11-235

5.32e-17

Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 80.23 E-value: 5.32e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKEL--LGLSDhamsqIRG 88
Cdd:cd03244     7 NVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDIskIGLHD-----LRS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  89 RmIGTVFQDPM-------SALTP--VYTiGDQIAEAIE-IHSREISRADArrravELLELVGIAQPErrarafphELSGG 158
Cdd:cd03244    79 R-ISIIPQDPVlfsgtirSNLDPfgEYS-DEELWQALErVGLKEFVESLP-----GGLDTVVEEGGE--------NLSVG 143

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTA-RDVTgaaVLIITHDLGVVSEFaDRALVMYAGRPVE 235
Cdd:cd03244   144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAfKDCT---VLTIAHRLDTIIDS-DRILVLDKGRVVE 217

PRK15056

manganese/iron ABC transporter ATP-binding protein;

384-592

6.10e-17

manganese/iron ABC transporter ATP-binding protein;

Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 81.47 E-value: 6.10e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 384 SFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavldaaaRRRLRTELqVVFQDPVASLDPRLPVY-- 461
Cdd:PRK15056   27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-------RQALQKNL-VAYVPQSEEVDWSFPVLve 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAEP-------LRANGFHRHECeerVAELLAVVG-LDHSdaSRYPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 533
Cdd:PRK15056   99 DVVMMGryghmgwLRRAKKRDRQI---VTAALARVDmVEFR--HRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 534 DVSIQAGIVNLLLDLqRRFGLSYLFVSHDLSVVKHLAHrVAVMYRGMIVEQGESDQVFT 592
Cdd:PRK15056  174 DVKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTETTFT 230

3a01208

TIGR00958

Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]

1-248

6.76e-17

Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]

Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 84.39 E-value: 6.76e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTT-AALavigLLPEYARVSGSIRLHGKELLGLS 79
Cdd:TIGR00958 475 LEGLIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTvAAL----LQNLYQPTGGQVLLDGVPLVQYD 549

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  80 DHAMSqirgRMIGTVFQDP--MSAltpvyTIGDQIAEAIEIHSREISRADARRRAVEllELVGIAQPERRARAFPH--EL 155
Cdd:TIGR00958 550 HHYLH----RQVALVGQEPvlFSG-----SVRENIAYGLTDTPDEEIMAAAKAANAH--DFIMEFPNGYDTEVGEKgsQL 618

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 156 SGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQaQILDVLRTARDVTgaaVLIITHDLGVVsEFADRALVMYAGRPVE 235
Cdd:TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECE-QLLQESRSRASRT---VLLIAHRLSTV-ERADQILVLKKGSVVE 693

                         250
                  ....*....|...
gi 1424538268 236 IAAVDELYRDRRM 248
Cdd:TIGR00958 694 MGTHKQLMEDQGC 706

thiQ

PRK10771

thiamine ABC transporter ATP-binding protein ThiQ;

28-232

9.09e-17

thiamine ABC transporter ATP-binding protein ThiQ;

Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 80.01 E-value: 9.09e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKellglsDHAMSQIRGRMIGTVFQDpmSALTPVYT 107
Cdd:PRK10771   19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQ------DHTTTPPSRRPVSMLFQE--NNLFSHLT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 108 IGDQIAeaIEIHSREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDV 187
Cdd:PRK10771   88 VAQNIG--LGLNPGLKLNAAQREKLHAIARQMGIEDLLAR---LPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424538268 188 TVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:PRK10771  163 ALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGR 207

ABC_YhbG

cd03218

ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ...

5-243

9.31e-17

Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 79.89 E-value: 9.31e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEdievPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELlglSDHAM 83
Cdd:cd03218     1 LRAENLSKRYGKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVkPD----SGKILLDGQDI---TKLPM 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRMIG------TVFQDpmsaltpvYTIGDQIAEAIEIHsrEISRADARRRAVELLELVGIaQPERRARAFphELSG 157
Cdd:cd03218    70 HKRARLGIGylpqeaSIFRK--------LTVEENILAVLEIR--GLSKKEREEKLEELLEEFHI-THLRKSKAS--SLSG 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 158 GERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR----- 232
Cdd:cd03218   137 GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKvlaeg 215

                         250
                  ....*....|....*
gi 1424538268 233 -PVEIAA---VDELY 243
Cdd:cd03218   216 tPEEIAAnelVRKVY 230

PRK13536

nodulation factor ABC transporter ATP-binding protein NodI;

22-234

9.46e-17

nodulation factor ABC transporter ATP-binding protein NodI;

Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 81.80 E-value: 9.46e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIrlhgkELLGLSDHAMSQIRGRMIGTVFQdpMSA 101
Cdd:PRK13536   55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKI-----TVLGVPVPARARLARARIGVVPQ--FDN 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTPVYTIgdqiAEAIEIHSREIsRADARRRAVELLELVGIAQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:PRK13536  125 LDLEFTV----RENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 182 TTALDVTVQAQILDVLRT--ARdvtGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:PRK13536  200 TTGLDPHARHLIWERLRSllAR---GKTILLTTHFMEEAERLCDRLCVLEAGRKI 251

oligo_HPY

pfam08352

Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ...

234-300

1.64e-16

Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 73.97 E-value: 1.64e-16

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 234 VEIAAVDELYRDRRMPYTVGLLGSVPRLDAAQgTRLIPIPGAPPTMTSLSPGaCTFAPRCPLAIDEC 300
Cdd:pfam08352   1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPK-RPLYTIPGNVPSLLELPEG-CPFAPRCPFATEEC 65

ugpC

PRK11650

sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;

21-244

1.65e-16

sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;

Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 81.43 E-value: 1.65e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeyARV-SGSIRLHGKELLGLSDhamsqiRGRMIGTVFQDpm 99
Cdd:PRK11650   17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL----ERItSGEIWIGGRVVNELEP------ADRDIAMVFQN-- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 100 SALTPVYTIGDQIAEAIEIhsREISRADARRR---AVELLELvgiaQP--ERRarafPHELSGGERQRVVIAIAIANDPD 174
Cdd:PRK11650   85 YALYPHMSVRENMAYGLKI--RGMPKAEIEERvaeAARILEL----EPllDRK----PRELSGGQRQRVAMGRAIVREPA 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 175 LLICDEPTTALDVTVQAQI-LDVLRTARDVtGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYR 244
Cdd:PRK11650  155 VFLFDEPLSNLDAKLRVQMrLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224

PRK10789

SmdA family multidrug ABC transporter permease/ATP-binding protein;

382-594

1.80e-16

SmdA family multidrug ABC transporter permease/ATP-binding protein;

Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 82.84 E-value: 1.80e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrLRTELQVVFQDPVASLDprlPVY 461
Cdd:PRK10789  333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS---WRSRLAVVSQTPFLFSD---TVA 406

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAepLRANGFHRHECEErVAELLAVvgldHSDASRYPAEF-----------SGGQKQRIGIARALALQPKILALDEPV 530
Cdd:PRK10789  407 NNIA--LGRPDATQQEIEH-VARLASV----HDDILRLPQGYdtevgergvmlSGGQKQRISIARALLLNAEILILDDAL 479

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 531 SALDVSIQAGIVNLLldLQRRFGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVFTNP 594
Cdd:PRK10789  480 SAVDGRTEHQILHNL--RQWGEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540

sufC

TIGR01978

FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ...

381-588

1.95e-16

FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]

Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 79.23 E-value: 1.95e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQIL--ELTKPEAGSIEILGTDVAVLDAAARRRLrtELQVVFQDPVASldPRL 458
Cdd:TIGR01978  17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAghPSYEVTSGTILFKGQDLLELEPDERARA--GLFLAFQYPEEI--PGV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 PVYDVIAEPLRANGFHRHECE-------ERVAELLAVVGLDHSDASRYPAE-FSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:TIGR01978  93 SNLEFLRSALNARRSARGEEPldlldfeKLLKEKLALLDMDEEFLNRSVNEgFSGGEKKRNEILQMALLEPKLAILDEID 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 531 SALDVSIQAGIVNLLLDLqRRFGLSYLFVSHDLSVVKHLA-HRVAVMYRGMIVEQGESD 588
Cdd:TIGR01978 173 SGLDIDALKIVAEGINRL-REPDRSFLIITHYQRLLNYIKpDYVHVLLDGRIVKSGDVE 230

PRK14258

phosphate ABC transporter ATP-binding protein; Provisional

5-223

2.14e-16

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 79.31 E-value: 2.14e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEYARVSGSIRLHGK-ELLGLSDHA- 82
Cdd:PRK14258    8 IKVNNLSFYYDTQKI----LEGVSMEIYQSKVTAIIGPSGCGKST----FLKCLNRMNELESEVRVEGRvEFFNQNIYEr 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 ---MSQIRgRMIGTVFQDPMSALTPVYtigDQIAEAIEI---HSReISRADARRRAVELLELVGIAQPERRARAFphELS 156
Cdd:PRK14258   80 rvnLNRLR-RQVSMVHPKPNLFPMSVY---DNVAYGVKIvgwRPK-LEIDDIVESALKDADLWDEIKHKIHKSAL--DLS 152

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFAD 223
Cdd:PRK14258  153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219

ABCC_NFT1

cd03369

ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ...

5-237

2.47e-16

Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 77.84 E-value: 2.47e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFeTEDIEvPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELLGLSDHAM 83
Cdd:cd03369     7 IEVENLSVRY-APDLP-PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLeAE----EGKIEIDGIDISTIPLEDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SqirgRMIGTVFQDPM-------SALTPV--YTiGDQIAEAIEIHSREISradarrravellelvgiaqperrarafphe 154
Cdd:cd03369    81 R----SSLTIIPQDPTlfsgtirSNLDPFdeYS-DEEIYGALRVSEGGLN------------------------------ 125

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 LSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTarDVTGAAVLIITHDLGVVSEFaDRALVMYAGRPV 234
Cdd:cd03369   126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE--EFTNSTILTIAHRLRTIIDY-DKILVMDAGEVK 202


                  ...
gi 1424538268 235 EIA 237
Cdd:cd03369   203 EYD 205

cbiO

PRK13644

energy-coupling factor transporter ATPase;

11-234

2.80e-16

energy-coupling factor transporter ATPase;

Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 79.26 E-value: 2.80e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEYARVSGSirlhgkellGLSDHAMSQIRG- 88
Cdd:PRK13644    6 NVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLrPQKGKVLVS---------GIDTGDFSKLQGi 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  89 -RMIGTVFQDPMSALtpvytIGDQIAEAIEIHSRE--ISRADARRRAVELLELVGIAQPERRArafPHELSGGERQRVVI 165
Cdd:PRK13644   76 rKLVGIVFQNPETQF-----VGRTVEEDLAFGPENlcLPPIEIRKRVDRALAEIGLEKYRHRS---PKTLSGGQGQCVAL 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 166 AIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEfADRALVMYAGRPV 234
Cdd:PRK13644  148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELHD-ADRIIVMDRGKIV 214

araG

PRK11288

L-arabinose ABC transporter ATP-binding protein AraG;

1-614

3.07e-16

L-arabinose ABC transporter ATP-binding protein AraG;

Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 81.88 E-value: 3.07e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFetedievPAVR---GTSYHIDPGEVLAIVGESGCGKTTAaLAVIGllPEYARVSGSIRLHGKELlg 77
Cdd:PRK11288    1 SSPYLSFDGIGKTF-------PGVKaldDISFDCRAGQVHALMGENGAGKSTL-LKILS--GNYQPDAGSILIDGQEM-- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  78 lsdhamsqirgrmigtVFQDPMSALTPVYTIGDQ---------IAEAI---EIHSRE--ISRADARRRAVELLELVGIA- 142
Cdd:PRK11288   69 ----------------RFASTTAALAAGVAIIYQelhlvpemtVAENLylgQLPHKGgiVNRRLLNYEAREQLEHLGVDi 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 143 QPERRARafphELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFA 222
Cdd:PRK11288  133 DPDTPLK----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALC 207

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 223 DRALVMYAGRPVE-IAAVDELYRDRrmpytvgllgsvprldaaqgtrlipipgapptmtslspgactfaprcplaidecl 301
Cdd:PRK11288  208 DAITVFKDGRYVAtFDDMAQVDRDQ------------------------------------------------------- 232

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 302 saepdLVRvadghwaacirtdDVAGRSAADVFGVSTQPppnnaaggQPPVVLRVSDLtktyrltKGVVVRRrvgevravd 381
Cdd:PRK11288  233 -----LVQ-------------AMVGREIGDIYGYRPRP--------LGEVRLRLDGL-------KGPGLRE--------- 270

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRL--------RTELQVVfqdPVAS 453
Cdd:PRK11288  271 PISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAgimlcpedRKAEGII---PVHS 347

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 454 ldprlpVYDVIA-----EPLRANGFHRHECEERVAEL----LAVVGLDHSDASRYpaeFSGGQKQRIGIARALALQPKIL 524
Cdd:PRK11288  348 ------VADNINisarrHHLRAGCLINNRWEAENADRfirsLNIKTPSREQLIMN---LSGGNQQKAILGRWLSEDMKVI 418

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 525 ALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVeqGESDQVFTNPQheytRRLLA 604
Cdd:PRK11288  419 LLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIA--GELAREQATER----QALSL 491

                         650
                  ....*....|
gi 1424538268 605 AVPRAHSDVA 614
Cdd:PRK11288  492 ALPRTSAAVA 501

ABC_FeS_Assembly

cd03217

ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ...

382-585

3.18e-16

Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 77.57 E-value: 3.18e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDPvasldPRLPvy 461
Cdd:cd03217    18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYP-----PEIP-- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 dviaeplrangfhrhecEERVAELLavvgldhsdasRYPAE-FSGGQKQRIGIARALALQPKILALDEPVSALDV---SI 537
Cdd:cd03217    91 -----------------GVKNADFL-----------RYVNEgFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIdalRL 142

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1424538268 538 QAGIVNLLLDLqrrfGLSYLFVSHDLSVVKHL-AHRVAVMYRGMIVEQG 585
Cdd:cd03217   143 VAEVINKLREE----GKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG 187

znuC

PRK09544

high-affinity zinc transporter ATPase; Reviewed

383-566

4.10e-16

high-affinity zinc transporter ATPase; Reviewed

Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 78.23 E-value: 4.10e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEilgtdvavldaaarRRLRTELQVVFQDpvASLDPRLPvyd 462
Cdd:PRK09544   23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK--------------RNGKLRIGYVPQK--LYLDTTLP--- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 viaepLRANGFHRHECEERVAELLAVvgLDHSDASR---YPAE-FSGGQKQRIGIARALALQPKILALDEPVSALDVSIQ 538
Cdd:PRK09544   84 -----LTVNRFLRLRPGTKKEDILPA--LKRVQAGHlidAPMQkLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156

                         170       180
                  ....*....|....*....|....*...
gi 1424538268 539 AGIVNLLLDLQRRFGLSYLFVSHDLSVV 566
Cdd:PRK09544  157 VALYDLIDQLRRELDCAVLMVSHDLHLV 184

CydC

TIGR02868

thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ...

22-215

4.14e-16

thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 81.64 E-value: 4.14e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHAMSqirgRMIGTVFQDPMSA 101
Cdd:TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP---LQGEVTLDGVPVSSLDQDEVR----RRVSVCAQDAHLF 421

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LTpvyTIGDQIAeaieihsreISRADARRRAV-ELLELVGIAQPerrARAFPH-----------ELSGGERQRVVIAIAI 169
Cdd:TIGR02868 422 DT---TVRENLR---------LARPDATDEELwAALERVGLADW---LRALPDgldtvlgeggaRLSGGERQRLALARAL 486

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1424538268 170 ANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDL 215
Cdd:TIGR02868 487 LADAPILLLDEPTEHLDAETADELLEDLLAALS--GRTVVLITHHL 530

CydC

TIGR02868

thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ...

293-563

7.14e-16

Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 80.87 E-value: 7.14e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 293 CPLAIDECLSAEPDLVRVADGHWAACIRTDDVAGrsAADVFGVSTQPPPNNAAGGQPPVVLRvsDLTKTYrltkgvvvrr 372
Cdd:TIGR02868 279 LPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLD--AAGPVAEGSAPAAGAVGLGKPTLELR--DLSAGY---------- 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 373 rVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrteLQVVFQDPva 452
Cdd:TIGR02868 345 -PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR---VSVCAQDA-- 418

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 453 sldprlpvyDVIAEPLRAN-GFHRHEC-EERVAELLAVVGLdHSDASRYP-----------AEFSGGQKQRIGIARALAL 519
Cdd:TIGR02868 419 ---------HLFDTTVRENlRLARPDAtDEELWAALERVGL-ADWLRALPdgldtvlgeggARLSGGERQRLALARALLA 488

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1424538268 520 QPKILALDEPVSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDL 563
Cdd:TIGR02868 489 DAPILLLDEPTEHLDAETADELLEDLLAALS--GRTVVLITHHL 530

PRK10253

iron-enterobactin ABC transporter ATP-binding protein;

383-592

8.25e-16

iron-enterobactin ABC transporter ATP-binding protein;

Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 77.72 E-value: 8.25e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavlDAAARRRLRTELQVVFQDPVASLDprLPVYD 462
Cdd:PRK10253   26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI---QHYASKEVARRIGLLAQNATTPGD--ITVQE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIA------EPLRANgfHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:PRK10253  101 LVArgryphQPLFTR--WRKEDEEAVTKAMQATGITHL-ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 537 IQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFT 592
Cdd:PRK10253  178 HQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233

thiQ

TIGR01277

thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ...

31-232

8.48e-16

Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 76.44 E-value: 8.48e-16

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHAmsqirgRMIGTVFQDpmSALTPVYTIGD 110
Cdd:TIGR01277  21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQ------RPVSMLFQE--NNLFAHLTVRQ 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 111 QIAeaIEIHSREISRADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQ 190
Cdd:TIGR01277  90 NIG--LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR---LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1424538268 191 AQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:TIGR01277 165 EEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206

MK0520

COG2401

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ...

381-569

1.37e-15

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];

Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 76.15 E-value: 1.37e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTK--PEAGSIEI----LGTDVAVLDAaarrrlrtelqvvfqdpvasL 454
Cdd:COG2401    47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDVpdnqFGREASLIDA--------------------I 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 455 DPRLPVYDVIaeplrangfhrheceervaELLAVVGLdhSDAS---RYPAEFSGGQKQRIGIARALALQPKILALDEPVS 531
Cdd:COG2401   107 GRKGDFKDAV-------------------ELLNAVGL--SDAVlwlRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCS 165

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1424538268 532 ALDVSiQAGIVNL-LLDLQRRFGLSYLFVSHDLSVVKHL 569
Cdd:COG2401   166 HLDRQ-TAKRVARnLQKLARRAGITLVVATHHYDVIDDL 203

PRK10895

lipopolysaccharide ABC transporter ATP-binding protein; Provisional

24-248

1.38e-15

lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 76.47 E-value: 1.38e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLGLSDHAMSQirgRMIGTVFQDPmsALT 103
Cdd:PRK10895   19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLHARAR---RGIGYLPQEA--SIF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 104 PVYTIGDQIAEAIEIHsREISRADARRRAVELLELVGIAQPERrarAFPHELSGGERQRVVIAIAIANDPDLLICDEPTT 183
Cdd:PRK10895   91 RRLSVYDNLMAVLQIR-DDLSAEQREDRANELMEEFHIEHLRD---SMGQSLSGGERRRVEIARALAANPKFILLDEPFA 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 184 ALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRM 248
Cdd:PRK10895  167 GVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHV 230

PRK11160

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

381-589

1.42e-15

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 79.87 E-value: 1.42e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrLRTELQVVFQDP---VASLDPR 457
Cdd:PRK11160  357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA---LRQAISVVSQRVhlfSATLRDN 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 458 LpvydVIAEPlRANgfhrhecEERVAELLAVVGLDH------------SDASRypaEFSGGQKQRIGIARALALQPKILA 525
Cdd:PRK11160  434 L----LLAAP-NAS-------DEALIEVLQQVGLEKlleddkglnawlGEGGR---QLSGGEQRRLGIARALLHDAPLLL 498

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 526 LDEPVSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHLaHRVAVMYRGMIVEQGESDQ 589
Cdd:PRK11160  499 LDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQE 559

PRK14246

phosphate ABC transporter ATP-binding protein; Provisional

24-243

2.13e-15

phosphate ABC transporter ATP-binding protein; Provisional

Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 76.62 E-value: 2.13e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEY---ARVSGSIRLHGKELLGLSDHAMSqirgRMIGTVFQDPMS 100
Cdd:PRK14246   26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYdskIKVDGKVLYFGKDIFQIDAIKLR----KEVGMVFQQPNP 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 alTPVYTIGDQIAEAIEIHSREISRaDARRRAVELLELVGI-AQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICD 179
Cdd:PRK14246  102 --FPHLSIYDNIAYPLKSHGIKEKR-EIKKIVEECLRKVGLwKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 180 EPTTALDVtVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELY 243
Cdd:PRK14246  179 EPTSMIDI-VNSQAIEKLITELK-NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240

AztA

zinc ABC transporter ATP-binding protein AztA;

382-573

2.24e-15

zinc ABC transporter ATP-binding protein AztA;

Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 74.58 E-value: 2.24e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIeilgtdvavldaaaRRRLRTELQVVFQDpvASLDPRLP-- 459
Cdd:NF040873   10 GVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV--------------RRAGGARVAYVPQR--SEVPDSLPlt 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIA----EPLRANGFHRHECEERVAELLAVVGLdHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV 535
Cdd:NF040873   74 VRDLVAmgrwARRGLWRRLTRDDRAAVDDALERVGL-ADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDA 152

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1424538268 536 SIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRV 573
Cdd:NF040873  153 ESRERIIALLAEEHAR-GATVVVVTHDLELVRRADPCV 189

btuD

PRK09536

corrinoid ABC transporter ATPase; Reviewed

381-594

3.41e-15

corrinoid ABC transporter ATPase; Reviewed

Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 77.96 E-value: 3.41e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrteLQVVFQDPVASLDPRL-P 459
Cdd:PRK09536   20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR---VASVPQDTSLSFEFDVrQ 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VYDVIAEPLRANgFHRHECEER--VAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSI 537
Cdd:PRK09536   97 VVEMGRTPHRSR-FDTWTETDRaaVERAMERTGVAQF-ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 538 QAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTNP 594
Cdd:PRK09536  175 QVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230

PLN03130

ABC transporter C family member; Provisional

382-541

4.02e-15

ABC transporter C family member; Provisional

Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 79.40 E-value: 4.02e-15

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLdaaARRRLRTELQVVFQDPVA-------SL 454
Cdd:PLN03130  1257 GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---GLMDLRKVLGIIPQAPVLfsgtvrfNL 1333

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  455 DPrlpvydviaeplrangFHRH------ECEERvAELLAVV-----GLDhSDASRYPAEFSGGQKQRIGIARALALQPKI 523
Cdd:PLN03130  1334 DP----------------FNEHndadlwESLER-AHLKDVIrrnslGLD-AEVSEAGENFSVGQRQLLSLARALLRRSKI 1395

                          170
                   ....*....|....*...
gi 1424538268  524 LALDEPVSALDVSIQAGI 541
Cdd:PLN03130  1396 LVLDEATAAVDVRTDALI 1413

YddA

COG4178

ABC-type uncharacterized transport system, permease and ATPase components [General function ...

24-240

4.71e-15

ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];

Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 78.31 E-value: 4.71e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTT--AALAviGLLPEYarvSGSIRL-HGKELLGLSdhamsqirgrmigtvfQDPms 100
Cdd:COG4178   379 LEDLSLSLKPGERLLITGPSGSGKSTllRAIA--GLWPYG---SGRIARpAGARVLFLP----------------QRP-- 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 altpvYTIGDQIAEAI--EIHSREISRADARrravELLELVGIAQ-PER--RARAFPHELSGGERQRVVIAIAIANDPDL 175
Cdd:COG4178   436 -----YLPLGTLREALlyPATAEAFSDAELR----EALEAVGLGHlAERldEEADWDQVLSLGEQQRLAFARLLLHKPDW 506

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 176 LICDEPTTALDVTVQAQILDVLRTArdVTGAAVLIITHDlGVVSEFADRALVMYAGRPVEIAAVD 240
Cdd:COG4178   507 LFLDEATSALDEENEAALYQLLREE--LPGTTVISVGHR-STLAAFHDRVLELTGDGSWQLLPAE 568

ABCG_White

cd03234

White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ...

382-585

4.90e-15

Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 74.61 E-value: 4.90e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQIleltkpeAGSIEILGT---DVAVLDAAARRRLrtelqvvFQDPVASLD--- 455
Cdd:cd03234    25 DVSLHVESGQVMAILGSSGSGKTTLLDAI-------SGRVEGGGTtsgQILFNGQPRKPDQ-------FQKCVAYVRqdd 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 456 ---PRLPVYDVI--AEPLRangFHRHECEERVAELLAVVGLDH----SDASRYPAEFSGGQKQRIGIARALALQPKILAL 526
Cdd:cd03234    91 illPGLTVRETLtyTAILR---LPRKSSDAIRKKRVEDVLLRDlaltRIGGNLVKGISGGERRRVSIAVQLLWDPKVLIL 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 527 DEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:cd03234   168 DEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

ABCC_MRP_domain1

cd03250

ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ...

5-232

4.96e-15

ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 74.04 E-value: 4.96e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIE-VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGllpEYARVSGSIRLHGKellglsdham 83
Cdd:cd03250     1 ISVEDASFTWDSGEQEtSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG---ELEKLSGSVSVPGS---------- 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 sqirgrmIGTVFQDP--MSAltpvyTIGDQIaeaieIHSREIsraDARR--RAVELLELvgiaqpERRARAFPH------ 153
Cdd:cd03250    68 -------IAYVSQEPwiQNG-----TIRENI-----LFGKPF---DEERyeKVIKACAL------EPDLEILPDgdltei 121

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 154 -E----LSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEfADRALVM 228
Cdd:cd03250   122 gEkginLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVL 200


                  ....
gi 1424538268 229 YAGR 232
Cdd:cd03250   201 DNGR 204

modC

PRK11144

molybdenum ABC transporter ATP-binding protein ModC;

36-232

1.36e-14

molybdenum ABC transporter ATP-binding protein ModC;

Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 75.68 E-value: 1.36e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  36 VLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELlglSDHAmSQI----RGRMIGTVFQDpmSALTPVYTI-- 108
Cdd:PRK11144   26 ITAIFGRSGAGKTSLINAISGLTrPQ----KGRIVLNGRVL---FDAE-KGIclppEKRRIGYVFQD--ARLFPHYKVrg 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 109 ----GdqiaeaieihsreISRADARR--RAVELLelvGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
Cdd:PRK11144   96 nlryG-------------MAKSMVAQfdKIVALL---GIEPLLDR---YPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 183 TALDVTVQAQILDVL-RTARDVTgAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:PRK11144  157 ASLDLPRKRELLPYLeRLAREIN-IPILYVSHSLDEILRLADRVVVLEQGK 206

GguA

sugar ABC transporter ATP-binding protein;

21-235

1.40e-14

sugar ABC transporter ATP-binding protein;

Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 76.37 E-value: 1.40e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeYARVSGSIRLHGkELLGLSDHAMSQIRGrmIGTVFQDpmS 100
Cdd:NF040905   14 VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYP-HGSYEGEILFDG-EVCRFKDIRDSEALG--IVIIHQE--L 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 ALTPVYTIGDQIAEAIEIHSRE-ISRADARRRAVELLELVGIAQPerrarafPHELSG----GERQRVVIAIAIANDPDL 175
Cdd:NF040905   88 ALIPYLSIAENIFLGNERAKRGvIDWNETNRRARELLAKVGLDES-------PDTLVTdigvGKQQLVEIAKALSKDVKL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 176 LICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:NF040905  161 LILDEPTAALNEEDSAALLDLLLELKA-QGITSIIISHKLNEIRRVADSITVLRDGRTIE 219

PRK10790

SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;

395-591

1.55e-14

SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;

Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 76.68 E-value: 1.55e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 395 IVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrLRTELQVVFQDPVasldprlpvydVIAEPLRAN-GF 473
Cdd:PRK10790  372 LVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSV---LRQGVAMVQQDPV-----------VLADTFLANvTL 437

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 474 HRHECEERVAELLAVVGLD----------HSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVN 543
Cdd:PRK10790  438 GRDISEEQVWQALETVQLAelarslpdglYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1424538268 544 LLLDLQRRFGLsyLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVF 591
Cdd:PRK10790  518 ALAAVREHTTL--VVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLL 562

ABCF_EF-3

cd03221

ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ...

5-228

1.55e-14

ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 70.94 E-value: 1.55e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   5 LEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTaalavigllpeyarvsgsirlhgkeLLGLsdhams 84
Cdd:cd03221     1 IELENLSKTYGGKLL----LKDISLTINPGDRIGLVGRNGAGKST-------------------------LLKL------ 45

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  85 qirgrmigtvfqdpmsaltpvytigdqIAEAIEIHSREISRADArrravellelVGIAQperraraFPHeLSGGERQRVV 164
Cdd:cd03221    46 ---------------------------IAGELEPDEGIVTWGST----------VKIGY-------FEQ-LSGGEKMRLA 80

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtgaAVLIITHDLGVVSEFADRALVM 228
Cdd:cd03221    81 LAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIEL 140

PRK09700

D-allose ABC transporter ATP-binding protein AlsA;

1-250

1.59e-14

D-allose ABC transporter ATP-binding protein AlsA;

Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 76.36 E-value: 1.59e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDI---EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELLG 77
Cdd:PRK09700  253 MKENVSNLAHETVFEVRNVtsrDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISP 329

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  78 LSDhaMSQIRGRMIGTVFQDPMSALTPVYTIGDQIAEAIEI-------------HSREISRADARRravELLEL--VGIA 142
Cdd:PRK09700  330 RSP--LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLkdggykgamglfhEVDEQRTAENQR---ELLALkcHSVN 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 143 QPerrarafPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFA 222
Cdd:PRK09700  405 QN-------ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVC 476

                         250       260
                  ....*....|....*....|....*....
gi 1424538268 223 DRALVMYAGRPVEI-AAVDELYRDRRMPY 250
Cdd:PRK09700  477 DRIAVFCEGRLTQIlTNRDDMSEEEIMAW 505

PRK11831

phospholipid ABC transporter ATP-binding protein MlaF;

34-228

1.86e-14

phospholipid ABC transporter ATP-binding protein MlaF;

Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 74.03 E-value: 1.86e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  34 GEVLAIVGESGCGKTTAaLAVIG--LLPEyarvSGSIRLHGKELLGLSDHAMSQIRGRMiGTVFQDpmSALTPVYTIGDQ 111
Cdd:PRK11831   33 GKITAIMGPSGIGKTTL-LRLIGgqIAPD----HGEILFDGENIPAMSRSRLYTVRKRM-SMLFQS--GALFTDMNVFDN 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 112 IAEAIEIHSReISRADARRRAVELLELVGIaqpERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALD---VT 188
Cdd:PRK11831  105 VAYPLREHTQ-LPAPLLHSTVMMKLEAVGL---RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDpitMG 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1424538268 189 VQAQILDVLRTARDVTgaaVLIITHDLGVVSEFADRALVM 228
Cdd:PRK11831  181 VLVKLISELNSALGVT---CVVVSHDVPEVLSIADHAYIV 217

PLN03232

ABC transporter C family member; Provisional

382-607

1.95e-14

ABC transporter C family member; Provisional

Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 76.94 E-value: 1.95e-14

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrteLQVVFQDPVA-------SL 454
Cdd:PLN03232  1254 GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV---LSIIPQSPVLfsgtvrfNI 1330

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  455 DPRLPVYDviAEPLRAngFHRHECEERVAEllAVVGLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALD 534
Cdd:PLN03232  1331 DPFSEHND--ADLWEA--LERAHIKDVIDR--NPFGLD-AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268  535 VSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHlAHRVAVMYRGMIVEQGESDQVFTNPQHEYTRRLLAAVP 607
Cdd:PLN03232  1404 VRTDSLIQRTIREEFK--SCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473

znuC

PRK09544

high-affinity zinc transporter ATPase; Reviewed

1-226

2.53e-14

high-affinity zinc transporter ATPase; Reviewed

Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 73.22 E-value: 2.53e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLpeyARVSGSIRLHGkellglsd 80
Cdd:PRK09544    1 MTSLVSLENVSVSFGQRRV----LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV---APDEGVIKRNG-------- 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 hamsQIRgrmIGTVFQDPMSALTPVYTIGDQIAEAIEIHSREISRADARRRAVELLElvgiaQPERRarafpheLSGGER 160
Cdd:PRK09544   66 ----KLR---IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----APMQK-------LSGGET 126

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRAL 226
Cdd:PRK09544  127 QRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL 192

ABCC_TAP

cd03248

ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ...

11-232

2.65e-14

Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 72.50 E-value: 2.65e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETED-IEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPE-YARVSGSIRLHGKELlGLSDHAMSQirg 88
Cdd:cd03248    16 NVTFAYPTrPDTLVLQDVSFTLHPGEVTALVGPSGSGKST----VVALLENfYQPQGGQVLLDGKPI-SQYEHKYLH--- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  89 RMIGTVFQDP-MSAltpvYTIGDQIAEAIEIHSREI-----SRADARRRAVELLELVGIAQPERRArafphELSGGERQR 162
Cdd:cd03248    88 SKVSLVGQEPvLFA----RSLQDNIAYGLQSCSFECvkeaaQKAHAHSFISELASGYDTEVGEKGS-----QLSGGQKQR 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 163 VVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRtaRDVTGAAVLIITHDLGVVsEFADRALVMYAGR 232
Cdd:cd03248   159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALY--DWPERRTVLVIAHRLSTV-ERADQILVLDGGR 225

40850658_otr

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;

20-242

4.27e-14

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;

Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 74.00 E-value: 4.27e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARvsgsiRLHGKELLGLSDHAMSQIRG--RMIGTVFQD 97
Cdd:NF000106   25 EVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAGR-----RPWRF*TWCANRRALRRTIG*hRPVR*GRRE 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  98 PMSALTPVYTIGDQIaeaieihsrEISRADARRRAVELLELVGIAQPERRARAfphELSGGERQRVVIAIAIANDPDLLI 177
Cdd:NF000106  100 SFSGRENLYMIGR*L---------DLSRKDARARADELLERFSLTEAAGRAAA---KYSGGMRRRLDLAASMIGRPAVLY 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 178 CDEPTTALDVTVQAQILDVLRT-ARDvtGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:NF000106  168 LDEPTTGLDPRTRNEVWDEVRSmVRD--GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231

PRK13539

cytochrome c biogenesis protein CcmA; Provisional

382-545

4.93e-14

cytochrome c biogenesis protein CcmA; Provisional

Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 71.44 E-value: 4.93e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAArrrlrtelQVVFQDPVASLDPRLPVy 461
Cdd:PRK13539   20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE--------ACHYLGHRNAMKPALTV- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 dviAEPLR--ANGFHRHECeeRVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK13539   91 ---AENLEfwAAFLGGEEL--DIAAALEAVGLAPL-AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA 164


                  ....*.
gi 1424538268 540 GIVNLL 545
Cdd:PRK13539  165 LFAELI 170

ABCF_EF-3

cd03221

ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ...

381-576

6.48e-14

Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 69.01 E-value: 6.48e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEilgtdvavldaaarrrlrtelqvvfqdpvasLDPRLPV 460
Cdd:cd03221    17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT-------------------------------WGSTVKI 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YdviaeplrangfhrheceervaellavvgldhsdasrYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV-SIQA 539
Cdd:cd03221    66 G-------------------------------------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLeSIEA 108

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1424538268 540 gIVNLLLDLQRrfglSYLFVSHDLSVVKHLAHRVAVM 576
Cdd:cd03221   109 -LEEALKEYPG----TVILVSHDRYFLDQVATKIIEL 140

ABC_KpsT_Wzt

cd03220

ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ...

13-232

9.07e-14

Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 71.02 E-value: 9.07e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  13 TFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIG--LLPEyarvSGSIRLHGK--ELLGLsdhamsqirg 88
Cdd:cd03220    27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTL-LRLLAgiYPPD----SGTVTVRGRvsSLLGL---------- 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  89 rmiGTVFQDPMSALTPVYTIGdqiaeaiEIHSreISRADARRRAVELLELVGIAQ----PERrarafphELSGGERQRVV 164
Cdd:cd03220    92 ---GGGFNPELTGRENIYLNG-------RLLG--LSRKEIDEKIDEIIEFSELGDfidlPVK-------TYSSGMKARLA 152

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:cd03220   153 FAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHDPSSIKRLCDRALVLEKGK 219

PTZ00265

multidrug resistance protein (mdr1); Provisional

383-568

9.55e-14

multidrug resistance protein (mdr1); Provisional

Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 75.07 E-value: 9.55e-14

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIlgTDVAVLDAAARRRLRTELQVVFQDPVASLDP------ 456
Cdd:PTZ00265   404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII--NDSHNLKDINLKWWRSKIGVVSQDPLLFSNSiknnik 481

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  457 ----RLPVYDVIAEPLRANGF-------HRHECEERVA-------------ELLAVVG-----------------LDHSD 495
Cdd:PTZ00265   482 yslySLKDLEALSNYYNEDGNdsqenknKRNSCRAKCAgdlndmsnttdsnELIEMRKnyqtikdsevvdvskkvLIHDF 561

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  496 ASRYP-----------AEFSGGQKQRIGIARALALQPKILALDEPVSALDVS----IQAGIVNLLLDLQRrfglSYLFVS 560
Cdd:PTZ00265   562 VSALPdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKseylVQKTINNLKGNENR----ITIIIA 637


                   ....*...
gi 1424538268  561 HDLSVVKH 568
Cdd:PTZ00265   638 HRLSTIRY 645

PRK11000

maltose/maltodextrin ABC transporter ATP-binding protein MalK;

31-257

9.55e-14

maltose/maltodextrin ABC transporter ATP-binding protein MalK;

Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 73.14 E-value: 9.55e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAaLAVIGLLPEYArvSGsirlhgkELLgLSDHAMSQI--RGRMIGTVFQDpmSALTPVYTI 108
Cdd:PRK11000   26 IHEGEFVVFVGPSGCGKSTL-LRMIAGLEDIT--SG-------DLF-IGEKRMNDVppAERGVGMVFQS--YALYPHLSV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 109 GDQIAEAIEIHSreISRADARRR---AVELLELVGIAqpERRarafPHELSGGERQRVVIAIAIANDPDLLICDEPTTAL 185
Cdd:PRK11000   93 AENMSFGLKLAG--AKKEEINQRvnqVAEVLQLAHLL--DRK----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 186 DVTVQAQI-LDVLRTARDVtGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYRDRRMPYTVGLLGS 257
Cdd:PRK11000  165 DAALRVQMrIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGS 236

ccmA

TIGR01189

heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ...

382-566

1.34e-13

heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]

Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 69.69 E-value: 1.34e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLdaaarRRLRTElQVVFQDPVASLDPRLPVy 461
Cdd:TIGR01189  18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQ-----RDEPHE-NILYLGHLPGLKPELSA- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 dviAEPLR-ANGFHRHEcEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:TIGR01189  91 ---LENLHfWAAIHGGA-QRTIEDALAAVGLTGF-EDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVAL 165

                         170       180
                  ....*....|....*....|....*.
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVV 566
Cdd:TIGR01189 166 LAGLLRAHLARGGIVLLTTHQDLGLV 191

ABC_RNaseL_inhibitor_domain1

cd03236

The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...

33-233

1.89e-13

The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 70.47 E-value: 1.89e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  33 PGEVLAIVGESGCGKTTAALAVIG-LLPEYARvsgsirlHGKEllGLSDHAMSQIRGRMIGTVFQDPMS-----ALTPVY 106
Cdd:cd03236    25 EGQVLGLVGPNGIGKSTALKILAGkLKPNLGK-------FDDP--PDWDEILDEFRGSELQNYFTKLLEgdvkvIVKPQY 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 107 TigDQIAEAIEIHSREI-SRADARRRAVELLELVGIAQPERRARAfphELSGGERQRVVIAIAIANDPDLLICDEPTTAL 185
Cdd:cd03236    96 V--DLIPKAVKGKVGELlKKKDERGKLDELVDQLELRHVLDRNID---QLSGGELQRVAIAAALARDADFYFFDEPSSYL 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1424538268 186 DVtvqAQILDVLRTARDVT--GAAVLIITHDLGVVSEFADRALVMYaGRP 233
Cdd:cd03236   171 DI---KQRLNAARLIRELAedDNYVLVVEHDLAVLDYLSDYIHCLY-GEP 216

ABCG_PDR_domain1

cd03233

First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ...

20-234

2.13e-13

First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 69.21 E-value: 2.13e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKEllglSDHAMSQIRGRMIGTVFQDpm 99
Cdd:cd03233    19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP----YKEFAEKYPGEIIYVSEED-- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 100 sALTPVYTIGDQIAEAIEIHSREISRadarrravellelvGIaqperrarafphelSGGERQRVVIAIAIANDPDLLICD 179
Cdd:cd03233    93 -VHFPTLTVRETLDFALRCKGNEFVR--------------GI--------------SGGERKRVSIAEALVSRASVLCWD 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 180 EPTTALDVTVQAQILDVLRTARDVTGAAVLIITH--DLGVVSEFaDRALVMYAGRPV 234
Cdd:cd03233   144 NSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYqaSDEIYDLF-DKVLVLYEGRQI 199

ccmA

TIGR01189

heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ...

20-218

2.41e-13

Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 68.92 E-value: 2.41e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELLGLSDHAMSQIrgrmigtVFQDPM 99
Cdd:TIGR01189  12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTPLAEQRDEPHENI-------LYLGHL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 100 SALTPVYTIGDQIAEAIEIHSreisraDARRRAVELLELVGIAQPERRARAFpheLSGGERQRVVIAIAIANDPDLLICD 179
Cdd:TIGR01189  82 PGLKPELSALENLHFWAAIHG------GAQRTIEDALAAVGLTGFEDLPAAQ---LSAGQQRRLALARLWLSRRPLWILD 152

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1424538268 180 EPTTALDVTVQAQILDVLRtARDVTGAAVLIITH-DLGVV 218
Cdd:TIGR01189 153 EPTTALDKAGVALLAGLLR-AHLARGGIVLLTTHqDLGLV 191

PRK11147

ABC transporter ATPase component; Reviewed

385-582

2.81e-13

ABC transporter ATPase component; Reviewed

Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 72.68 E-value: 2.81e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 385 FTLEQGRTLGIVGESGSGKStTLNQILELTKP-EAGSIeILGTDVAVldaaARrrlrteLQvvfQDPvasldPRL---PV 460
Cdd:PRK11147   24 LHIEDNERVCLVGRNGAGKS-TLMKILNGEVLlDDGRI-IYEQDLIV----AR------LQ---QDP-----PRNvegTV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANG-----FHR------HECEERVAELLAVVG--LDHSDASRYP------------------AEFSGGQKQ 509
Cdd:PRK11147   84 YDFVAEGIEEQAeylkrYHDishlveTDPSEKNLNELAKLQeqLDHHNLWQLEnrinevlaqlgldpdaalSSLSGGWLR 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 510 RIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDlqrrFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIV 582
Cdd:PRK11147  164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT----FQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232

PRK13409

ribosome biogenesis/translation initiation ATPase RLI;

4-227

3.25e-13

ribosome biogenesis/translation initiation ATPase RLI;

Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 72.53 E-value: 3.25e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAvrGTSYHidpGEVLAIVGESGCGKTTAALAVIGLL-PEYARVSGSIRLHGKellglsdha 82
Cdd:PRK13409  340 LVEYPDLTKKLGDFSLEVEG--GEIYE---GEVIGIVGPNGIGKTTFAKLLAGVLkPDEGEVDPELKISYK--------- 405

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 mSQ-IRGRMIGTVfQDPMSALTPVYT---IGDQIAEAIEIHsreisradarrravELLElvgiaqpeRRARafphELSGG 158
Cdd:PRK13409  406 -PQyIKPDYDGTV-EDLLRSITDDLGssyYKSEIIKPLQLE--------------RLLD--------KNVK----DLSGG 457

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALV 227
Cdd:PRK13409  458 ELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526

PRK13539

cytochrome c biogenesis protein CcmA; Provisional

25-217

3.91e-13

cytochrome c biogenesis protein CcmA; Provisional

Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 68.75 E-value: 3.91e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  25 RGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELlGLSDHAmSQIRgrMIGtvfqdPMSALTP 104
Cdd:PRK13539   19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDI-DDPDVA-EACH--YLG-----HRNAMKP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 105 VYTIGDQIAEAIEIHSREISRADArrrAVELLELVGIAqpERRARafphELSGGERQRVVIA-IAIANDPdLLICDEPTT 183
Cdd:PRK13539   87 ALTVAENLEFWAAFLGGEELDIAA---ALEAVGLAPLA--HLPFG----YLSAGQKRRVALArLLVSNRP-IWILDEPTA 156

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1424538268 184 ALDVTVQAQILDVLRTARDvTGAAVLIITH-DLGV 217
Cdd:PRK13539  157 ALDAAAVALFAELIRAHLA-QGGIVIAATHiPLGL 190

Rli1

COG1245

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...

4-227

4.23e-13

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];

Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 72.12 E-value: 4.23e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIEVPAvrGTsyhIDPGEVLAIVGESGCGKTTAALAVIGLL-PEYARVSGSIRLHGKellglsdha 82
Cdd:COG1245   341 LVEYPDLTKSYGGFSLEVEG--GE---IREGEVLGIVGPNGIGKTTFAKILAGVLkPDEGEVDEDLKISYK--------- 406

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 mSQ-IRGRMIGTVFQDPMSALTPVYT---IGDQIAEAIEIHsreisradarrravELLElvgiaqpeRRARafphELSGG 158
Cdd:COG1245   407 -PQyISPDYDGTVEEFLRSANTDDFGssyYKTEIIKPLGLE--------------KLLD--------KNVK----DLSGG 459

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 159 ERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALV 227
Cdd:COG1245   460 ELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528

YddA

COG4178

ABC-type uncharacterized transport system, permease and ATPase components [General function ...

381-573

4.58e-13

ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];

Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 72.15 E-value: 4.58e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIL-GTDVAVLdaaARRrlrtelqvvfqdpvasldPRLP 459
Cdd:COG4178   380 EDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPaGARVLFL---PQR------------------PYLP 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 V---YDVIAEPLRANGFHrhecEERVAELLAVVGLDH-----SDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVS 531
Cdd:COG4178   439 LgtlREALLYPATAEAFS----DAELREALEAVGLGHlaerlDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATS 514

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1424538268 532 ALDVSIQAGIVNLLldLQRRFGLSYLFVSHDLSVVKHLAHRV 573
Cdd:COG4178   515 ALDEENEAALYQLL--REELPGTTVISVGHRSTLAAFHDRVL 554

PRK10253

iron-enterobactin ABC transporter ATP-binding protein;

31-242

5.22e-13

iron-enterobactin ABC transporter ATP-binding protein;

Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 69.63 E-value: 5.22e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAALAVIGLLpeyARVSGSIRLHGKELlglsDHAMSQIRGRMIGTVFQDpmsALTPV-YTIG 109
Cdd:PRK10253   30 IPDGHFTAIIGPNGCGKSTLLRTLSRLM---TPAHGHVWLDGEHI----QHYASKEVARRIGLLAQN---ATTPGdITVQ 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 110 DQIAEAIEIHSREISR-----ADARRRAvelLELVGIAQperRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTA 184
Cdd:PRK10253  100 ELVARGRYPHQPLFTRwrkedEEAVTKA---MQATGITH---LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 185 LDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDEL 242
Cdd:PRK10253  174 LDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231

MK0520

COG2401

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ...

15-236

6.05e-13

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];

Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 68.45 E-value: 6.05e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  15 ETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyARVSGSIRLhgkellglsdhamsqirgrmigtv 94
Cdd:COG2401    37 ELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKG-TPVAGCVDV------------------------ 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  95 fqdPMSALTPVYTIGDQIAEAIEIHSreisradarrrAVELLELVGIAQPER-RARafPHELSGGERQRVVIAIAIANDP 173
Cdd:COG2401    92 ---PDNQFGREASLIDAIGRKGDFKD-----------AVELLNAVGLSDAVLwLRR--FKELSTGQKFRFRLALLLAERP 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268 174 DLLICDEPTTALDVTVqAQIL--DVLRTARDvTGAAVLIITHDLGVVSEFADRALVM--YAGRPVEI 236
Cdd:COG2401   156 KLLVIDEFCSHLDRQT-AKRVarNLQKLARR-AGITLVVATHHYDVIDDLQPDLLIFvgYGGVPEEK 220

hmuV

PRK13547

heme ABC transporter ATP-binding protein;

24-273

1.21e-12

heme ABC transporter ATP-binding protein;

Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 68.70 E-value: 1.21e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEY-----ARVSGSIRLHGKELLGLSDHAMSQIRGRMigtvfqdP 98
Cdd:PRK13547   17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgARVTGDVTLNGEPLAAIDAPRLARLRAVL-------P 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  99 MSALTPVYTIGDQI-----------AEAIEIHSREIsradarrrAVELLELVGIAQPERRARAfphELSGGERQRVVIAI 167
Cdd:PRK13547   90 QAAQPAFAFSAREIvllgrypharrAGALTHRDGEI--------AWQALALAGATALVGRDVT---TLSGGELARVQFAR 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 168 AIAN---------DPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGRPVEIAA 238
Cdd:PRK13547  159 VLAQlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1424538268 239 VDELYRDRRMPYTVGLlgSVPRLDAAQGTRLIPIP 273
Cdd:PRK13547  239 PADVLTPAHIARCYGF--AVRLVDAGDGVPPVIVP 271

tagH

PRK13545

teichoic acids export protein ATP-binding subunit; Provisional

383-593

1.65e-12

teichoic acids export protein ATP-binding subunit; Provisional

Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 70.30 E-value: 1.65e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTdvAVLDAAArrrlrtelqvvfqdpvASLDPRLPVYd 462
Cdd:PRK13545   43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS--AALIAIS----------------SGLNGQLTGI- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 viaEPLRANGFHRHECEERVAELLAVVgLDHSDASRY---PAE-FSGGQKQRIGIARALALQPKILALDEpvsALDVSIQ 538
Cdd:PRK13545  104 ---ENIELKGLMMGLTKEKIKEIIPEI-IEFADIGKFiyqPVKtYSSGMKSRLGFAISVHINPDILVIDE---ALSVGDQ 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 539 AgIVNLLLDLQRRF---GLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PRK13545  177 T-FTKKCLDKMNEFkeqGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233

PLN03211

ABC transporter G-25; Provisional

7-232

3.11e-12

ABC transporter G-25; Provisional

Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 69.52 E-value: 3.11e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   7 VTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGllpeyarvsgsiRLHGKELLG---LSDHAM 83
Cdd:PLN03211   71 ISDETRQIQERTI----LNGVTGMASPGEILAVLGPSGSGKSTLLNALAG------------RIQGNNFTGtilANNRKP 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRMIGTVFQDPMsaLTPVYTIGDQIAEAIEIH-SREISRADARRRAVELLELVGIAQPERR--ARAFPHELSGGER 160
Cdd:PLN03211  135 TKQILKRTGFVTQDDI--LYPHLTVRETLVFCSLLRlPKSLTKQEKILVAESVISELGLTKCENTiiGNSFIRGISGGER 212

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:PLN03211  213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGR 284

Uup

COG0488

ATPase components of ABC transporters with duplicated ATPase domains [General function ...

4-235

3.43e-12

ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];

Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 68.94 E-value: 3.43e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFEtediEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaaLAVIgLLPEYARVSGSIRLhGKEL-LGLSDHA 82
Cdd:COG0488   315 VLELEGLSKSYG----DKTLLDDLSLRIDRGDRIGLIGPNGAGKST--LLKL-LAGELEPDSGTVKL-GETVkIGYFDQH 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 MSQIRGRMigTVFQdpmsaltpvyTIGDQIAEAIEIHSREI------SRADARRRAvellelvgiaqperrarafpHELS 156
Cdd:COG0488   387 QEELDPDK--TVLD----------ELRDGAPGGTEQEVRGYlgrflfSGDDAFKPV--------------------GVLS 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDV-TVQAqILDVLrtaRDVTGaAVLIITHDLGVVSEFADRALVMYAGRPVE 235
Cdd:COG0488   435 GGEKARLALAKLLLSPPNVLLLDEPTNHLDIeTLEA-LEEAL---DDFPG-TVLLVSHDRYFLDRVATRILEFEDGGVRE 509

ABC_CcmA_heme_exporter

cd03231

Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ...

382-573

4.61e-12

Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 65.59 E-value: 4.61e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLrteLQVVFQDPV-ASLDPRlpv 460
Cdd:cd03231    18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL---LYLGHAPGIkTTLSVL--- 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 ydviaEPLRAngFHRHECEERVAELLAVVGLDHSDaSRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAG 540
Cdd:cd03231    92 -----ENLRF--WHADHSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1424538268 541 IVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRV 573
Cdd:cd03231   164 FAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196

PRK10789

SmdA family multidrug ABC transporter permease/ATP-binding protein;

13-245

4.87e-12

SmdA family multidrug ABC transporter permease/ATP-binding protein;

Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 68.59 E-value: 4.87e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  13 TFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEYARVS-GSIRLHGkelLGLSDHAMSQIRGRMi 91
Cdd:PRK10789  320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKST----LLSLIQRHFDVSeGDIRFHD---IPLTKLQLDSWRSRL- 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  92 GTVFQDPmsaltpvYTIGDQIAEAI-----EIHSREISRAdARRRAV--ELLELVGIAQPERRARAFphELSGGERQRVV 164
Cdd:PRK10789  392 AVVSQTP-------FLFSDTVANNIalgrpDATQQEIEHV-ARLASVhdDILRLPQGYDTEVGERGV--MLSGGQKQRIS 461

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 165 IAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDEL-- 242
Cdd:PRK10789  462 IARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLaq 538


                  ....*..
gi 1424538268 243 ----YRD 245
Cdd:PRK10789  539 qsgwYRD 545

sufC

PRK09580

cysteine desulfurase ATPase component; Reviewed

4-235

5.05e-12

cysteine desulfurase ATPase component; Reviewed

Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 66.35 E-value: 5.05e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGlLPEYARVSGSIRLHGKELLGLSDHAM 83
Cdd:PRK09580    1 MLSIKDLHVSVEDKAI----LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG-REDYEVTGGTVEFKGKDLLELSPEDR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SqirGRMIGTVFQDPM------------SALTPVYTIGDQiaEAIEihsrEISRADARRRAVELLELvgiaQPERRARAF 151
Cdd:PRK09580   76 A---GEGIFMAFQYPVeipgvsnqfflqTALNAVRSYRGQ--EPLD----RFDFQDLMEEKIALLKM----PEDLLTRSV 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 152 PHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFA-DRALVMYA 230
Cdd:PRK09580  143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKpDYVHVLYQ 221


                  ....*
gi 1424538268 231 GRPVE 235
Cdd:PRK09580  222 GRIVK 226

ABC2_perm_RbbA

ribosome-associated ATPase/putative transporter RbbA;

381-529

5.23e-12

ribosome-associated ATPase/putative transporter RbbA;

Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 69.00 E-value: 5.23e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvlDAAARRRLRTElqvvfqdpVA-------- 452
Cdd:NF033858   18 DDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMA--DARHRRAVCPR--------IAympqglgk 87

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 453 SLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDhSDASRyPA-EFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:NF033858   88 NLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLA-PFADR-PAgKLSGGMKQKLGLCCALIHDPDLLILDEP 163

ABCC_MRP_domain1

cd03250

ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ...

382-579

6.64e-12

Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 64.80 E-value: 6.64e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQIL-ELTKPEaGSIEILGTdVAVldaaarrrlrtelqvvfqdpvASLDPRLP- 459
Cdd:cd03250    23 DINLEVPKGELVAIVGPVGSGKSSLLSALLgELEKLS-GSVSVPGS-IAY---------------------VSQEPWIQn 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 --VYDVIAeplrangFHRHECEERVAELLAVVGLDhSDASRYPA-------E----FSGGQKQRIGIARALALQPKILAL 526
Cdd:cd03250    80 gtIRENIL-------FGKPFDEERYEKVIKACALE-PDLEILPDgdlteigEkginLSGGQKQRISLARAVYSDADIYLL 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 527 DEPVSALDVS-----IQAGIVNLLLDLQRRfglsyLFVSHDLSVVKHlAHRVAVMYRG 579
Cdd:cd03250   152 DDPLSAVDAHvgrhiFENCILGLLLNNKTR-----ILVTHQLQLLPH-ADQIVVLDNG 203

ABC_RNaseL_inhibitor_domain2

cd03237

The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...

31-233

7.18e-12

The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 65.89 E-value: 7.18e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  31 IDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvsgsirlHGKELLGLSDHAM--SQIRGRMIGTVFQDPMSALTPVYT 107
Cdd:cd03237    22 ISESEVIGILGPNGIGKTTFIKMLAGVLkPD----------EGDIEIELDTVSYkpQYIKADYEGTVRDLLSSITKDFYT 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 108 IGDQIAEAIEIhsreisradarrravelLELVGIAqpERRARafphELSGGERQRVVIAIAIANDPDLLICDEPTTALDV 187
Cdd:cd03237    92 HPYFKTEIAKP-----------------LQIEQIL--DREVP----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1424538268 188 TVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVmYAGRP 233
Cdd:cd03237   149 EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV-FEGEP 193

MRP_assoc_pro

multi drug resistance-associated protein (MRP); This model describes multi drug ...

383-585

7.50e-12

multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]

Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 68.82 E-value: 7.50e-12

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLdaaARRRLRTELQVVFQDPVasldprlpvyd 462
Cdd:TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI---GLHDLRFKITIIPQDPV----------- 1370

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  463 VIAEPLRAN--GFHRHECEE-----RVAELLAVV-----GLDHsDASRYPAEFSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:TIGR00957 1371 LFSGSLRMNldPFSQYSDEEvwwalELAHLKTFVsalpdKLDH-ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268  531 SALDVS----IQAGIVNLLLDlqrrfgLSYLFVSHDLSVVKHLAhRVAVMYRGMIVEQG 585
Cdd:TIGR00957 1450 AAVDLEtdnlIQSTIRTQFED------CTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFG 1501

PTZ00265

multidrug resistance protein (mdr1); Provisional

383-594

8.12e-12

multidrug resistance protein (mdr1); Provisional

Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 68.52 E-value: 8.12e-12

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  383 ISFTLEQGRTLGIVGESGSGKSTTLNQIL-----------------------------------------ELTKPEAG-- 419
Cdd:PTZ00265  1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMrfydlkndhhivfknehtndmtneqdyqgdeeqnvgmknvnEFSLTKEGgs 1266

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  420 ---------SIEILGTDVAVLDAAARRrLRTELQVVFQDPVASldpRLPVYDVIAeplrangFHRHECE----ERVAELL 486
Cdd:PTZ00265  1267 gedstvfknSGKILLDGVDICDYNLKD-LRNLFSIVSQEPMLF---NMSIYENIK-------FGKEDATredvKRACKFA 1335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  487 AVVGLDHSDASRYPA-------EFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfglsylfv 559
Cdd:PTZ00265  1336 AIDEFIESLPNKYDTnvgpygkSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK-------- 1407

                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 1424538268  560 sHDLSVVKhLAHRVAVMYRgmiveqgeSDQ--VFTNP 594
Cdd:PTZ00265  1408 -ADKTIIT-IAHRIASIKR--------SDKivVFNNP 1434

ycf16

CHL00131

sulfate ABC transporter protein; Validated

4-213

9.10e-12

sulfate ABC transporter protein; Validated

Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 65.43 E-value: 9.10e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAAlAVIGLLPEYARVSGSIRLHGKELLGLSDHAM 83
Cdd:CHL00131    7 ILEIKNLHASVNENEI----LKGLNLSINKGEIHAIMGPNGSGKSTLS-KVIAGHPAYKILEGDILFKGESILDLEPEER 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQiRGRMIGtvFQDPmsaltpvytigdqiaeaIEIHSreISRAD-------ARRRAVEL---------------LELVGI 141
Cdd:CHL00131   82 AH-LGIFLA--FQYP-----------------IEIPG--VSNADflrlaynSKRKFQGLpeldplefleiinekLKLVGM 139

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 142 aQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITH 213
Cdd:CHL00131  140 -DPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITH 209

hmuV

PRK13547

heme ABC transporter ATP-binding protein;

381-596

1.00e-11

heme ABC transporter ATP-binding protein;

Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 65.62 E-value: 1.00e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQIL-ELTKPEA-------GSIEILGTDVAVLDAAARRRLRTELQVVFQdPVA 452
Cdd:PRK13547   18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAgDLTGGGAprgarvtGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ-PAF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 453 SLDPRLPVYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSDAsRYPAEFSGGQKQRIGIARALA---------LQPKI 523
Cdd:PRK13547   97 AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-RDVTTLSGGELARVQFARVLAqlwpphdaaQPPRY 175

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 524 LALDEPVSALDVSIQAGIVNLLLDLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTnPQH 596
Cdd:PRK13547  176 LLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT-PAH 247

livF

PRK11614

high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;

382-593

1.49e-11

high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;

Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 64.52 E-value: 1.49e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAarRRLRTELQVVFQDPvasldpRLPVY 461
Cdd:PRK11614   23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA--KIMREAVAIVPEGR------RVFSR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAEPLRANGF--HRHECEERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:PRK11614   95 MTVEENLAMGGFfaERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1424538268 540 GIVNLLLDLqRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PRK11614  175 QIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227

ABC2_perm_RbbA

ribosome-associated ATPase/putative transporter RbbA;

112-560

1.53e-11

ribosome-associated ATPase/putative transporter RbbA;

Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 67.46 E-value: 1.53e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 112 IAEAIEIHSR--EISRADARRRAVELLELVGIAQ-PERRARafphELSGGERQRVVIAIAIANDPDLLICDEPTTALDVT 188
Cdd:NF033858   95 VFENLDFFGRlfGQDAAERRRRIDELLRATGLAPfADRPAG----KLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPL 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 189 VQAQ---ILDVLRTARDvtGAAVLIITHDLGVVSEFaDRALVMYAGR------PVEIAA------VDELYrdrrmpytVG 253
Cdd:NF033858  171 SRRQfweLIDRIRAERP--GMSVLVATAYMEEAERF-DWLVAMDAGRvlatgtPAELLArtgadtLEAAF--------IA 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 254 LLGSVPRldaaQGTRLIPIPgapptmtslspgactfaPRCPLAIDEclsaepdlvrVAdghwaacIRTDDVAGRsaadvF 333
Cdd:NF033858  240 LLPEEKR----RGHQPVVIP-----------------PRPADDDDE----------PA-------IEARGLTMR-----F 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 334 GvstqpppnnaaggqppvvlrvsDLTktyrltkgvvvrrrvgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILEL 413
Cdd:NF033858  277 G----------------------DFT-------------------AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGL 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 414 TKPEAGSIEILGTDVAVLDAAARRR---------LRTELqVVFQDPVasLDPRLpvydviaeplrangFH--RHECEERV 482
Cdd:NF033858  316 LPASEGEAWLFGQPVDAGDIATRRRvgymsqafsLYGEL-TVRQNLE--LHARL--------------FHlpAAEIAARV 378

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 483 AELLAVVGL-DHSDAsrYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRFGLSyLFVS 560
Cdd:NF033858  379 AEMLERFDLaDVADA--LPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVT-IFIS 454

PRK10247

putative ABC transporter ATP-binding protein YbbL; Provisional

28-214

1.78e-11

putative ABC transporter ATP-binding protein YbbL; Provisional

Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 64.35 E-value: 1.78e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKELLGLSDHAMSQirgrmigtvfQDPMSALTPVY 106
Cdd:PRK10247   27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLIsPT----SGTLLFEGEDISTLKPEIYRQ----------QVSYCAQTPTL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 107 ---TIGDQIAEAIEIhsreisRADARRRAVELLELVGIAQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTT 183
Cdd:PRK10247   93 fgdTVYDNLIFPWQI------RNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1424538268 184 ALDVTVQAQILDVL-RTARDvTGAAVLIITHD 214
Cdd:PRK10247  167 ALDESNKHNVNEIIhRYVRE-QNIAVLWVTHD 197

PRK10790

SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;

11-235

1.98e-11

SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;

Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 66.67 E-value: 1.98e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  11 NVTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLlpeYARVSGSIRLHGKELLGLSDHAMSQirgrM 90
Cdd:PRK10790  345 NVSFAYRD-DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY---YPLTEGEIRLDGRPLSSLSHSVLRQ----G 416

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  91 IGTVFQDPMSALTPVY---TIGDQIAEAIEIHSREisradarrrAVELLELVgiaqperraRAFP-----------HELS 156
Cdd:PRK10790  417 VAMVQQDPVVLADTFLanvTLGRDISEEQVWQALE---------TVQLAELA---------RSLPdglytplgeqgNNLS 478

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 157 GGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTgaAVLIITHDLGVVSEfADRALVMYAGRPVE 235
Cdd:PRK10790  479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHT--TLVVIAHRLSTIVE-ADTILVLHRGQAVE 554

PRK10575

Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;

125-244

3.50e-11

Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;

Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 64.04 E-value: 3.50e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 125 RADARRRAVELLELVGIAQPERRaraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVT 204
Cdd:PRK10575  121 GAADREKVEEAISLVGLKPLAHR---LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1424538268 205 GAAVLIITHDLGVVSEFADRALVMYAGRPVEIAAVDELYR 244
Cdd:PRK10575  198 GLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237

ABCD_peroxisomal_ALDP

cd03223

ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ...

28-213

4.19e-11

ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).

Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 61.79 E-value: 4.19e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTT--AALAviGLLPEYarvSGSIRLHGKEllglsdhamsqirgrmiGTVF--QDPmsaLT 103
Cdd:cd03223    21 SFEIKPGDRLLITGPSGTGKSSlfRALA--GLWPWG---SGRIGMPEGE-----------------DLLFlpQRP---YL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 104 PVYTIGDQIAeaieihsreisradarrravellelvgiaqperraraFP--HELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:cd03223    76 PLGTLREQLI-------------------------------------YPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1424538268 182 TTALDVTVQAQILDVLRTArdvtGAAVLIITH 213
Cdd:cd03223   119 TSALDEESEDRLYQLLKEL----GITVISVGH 146

GguA

sugar ABC transporter ATP-binding protein;

381-583

4.89e-11

sugar ABC transporter ATP-binding protein;

Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 65.20 E-value: 4.89e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTtLNQILELTKPeAGSIE--IlgtdvaVLDAAARRrlrtelqvvFQDPVAS----- 453
Cdd:NF040905   18 DDVNLSVREGEIHALCGENGAGKST-LMKVLSGVYP-HGSYEgeI------LFDGEVCR---------FKDIRDSealgi 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 454 --------LDPRLPVYDVI---AEPLRANGFHRHECEERVAELLAVVGLDHSDASRYpAEFSGGQKQRIGIARALALQPK 522
Cdd:NF040905   81 viihqelaLIPYLSIAENIflgNERAKRGVIDWNETNRRARELLAKVGLDESPDTLV-TDIGVGKQQLVEIAKALSKDVK 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 523 ILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVE 583
Cdd:NF040905  160 LLILDEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDGRTIE 219

ycf16

CHL00131

sulfate ABC transporter protein; Validated

382-588

5.39e-11

sulfate ABC transporter protein; Validated

Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 63.12 E-value: 5.39e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTtlnqileLTKPEAG--SIEILGTDV-----AVLDAAARRRLRTELQVVFQDPV--- 451
Cdd:CHL00131   25 GLNLSINKGEIHAIMGPNGSGKST-------LSKVIAGhpAYKILEGDIlfkgeSILDLEPEERAHLGIFLAFQYPIeip 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 452 ---------ASLDPRLPVY-DVIAEPLrangfhrhECEERVAELLAVVGLDHSDASRYPAE-FSGGQKQRIGIARALALQ 520
Cdd:CHL00131   98 gvsnadflrLAYNSKRKFQgLPELDPL--------EFLEIINEKLKLVGMDPSFLSRNVNEgFSGGEKKRNEILQMALLD 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 521 PKILALDEPVSALDV----SIQAGIvNLLLDLQRrfglSYLFVSHD---LSVVKhlAHRVAVMYRGMIVEQGESD 588
Cdd:CHL00131  170 SELAILDETDSGLDIdalkIIAEGI-NKLMTSEN----SIILITHYqrlLDYIK--PDYVHVMQNGKIIKTGDAE 237

ABC_ABC_ChvD

TIGR03719

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...

155-562

7.80e-11

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 64.96 E-value: 7.80e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 LSGGERQRVVIAIAIANDPDLLICDEPTTALDvtvqAQILDVL-RTARDVTGAaVLIITHD---LGVVSEFA---DRA-L 226
Cdd:TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLD----AESVAWLeRHLQEYPGT-VVAVTHDryfLDNVAGWIlelDRGrG 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 227 VMYAG----------RPVEIAAVDELYRDRRMPYTVGLLGSVPRLDAAQG-TRLIpipgapptmtslspgactfaprcpl 295
Cdd:TIGR03719 237 IPWEGnysswleqkqKRLEQEEKEESARQKTLKRELEWVRQSPKGRQAKSkARLA------------------------- 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 296 AIDECLSAEPDlvrvadghwaaciRTDDVAgrsaadvfgvSTQPPPNNAAGGqppVVLRVSDLTKTY--RLtkgvvvrrr 373
Cdd:TIGR03719 292 RYEELLSQEFQ-------------KRNETA----------EIYIPPGPRLGD---KVIEAENLTKAFgdKL--------- 336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 374 vgevrAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGT-DVAVLDAaarrrlrtelqvvFQDpva 452
Cdd:TIGR03719 337 -----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETvKLAYVDQ-------------SRD--- 395

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 453 SLDPRLPVYDVIAEPLRANGFHRHECEERvaellAVVG---LDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEP 529
Cdd:TIGR03719 396 ALDPNKTVWEEISGGLDIIKLGKREIPSR-----AYVGrfnFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470

                         410       420       430
                  ....*....|....*....|....*....|...
gi 1424538268 530 VSALDVSIQAGIVNLLLDlqrrFGLSYLFVSHD 562
Cdd:TIGR03719 471 TNDLDVETLRALEEALLN----FAGCAVVISHD 499

ABCD_peroxisomal_ALDP

cd03223

ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ...

383-561

1.01e-10

Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 60.63 E-value: 1.01e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIL-GTDVAVLdaaarrrlrtelqvvfqdpvasldPRLPvY 461
Cdd:cd03223    20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPeGEDLLFL------------------------PQRP-Y 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 dVIAEPLRangfhrheceervaellavvgldhsDASRYP--AEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:cd03223    75 -LPLGTLR-------------------------EQLIYPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESED 128

                         170       180
                  ....*....|....*....|..
gi 1424538268 540 givnLLLDLQRRFGLSYLFVSH 561
Cdd:cd03223   129 ----RLYQLLKELGITVISVGH 146

rim_protein

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...

381-585

1.03e-10

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]

Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 65.03 E-value: 1.03e-10

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAV-LDAaarrrLRTELQVVFQDPVasLDPRLP 459
Cdd:TIGR01257  947 DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETnLDA-----VRQSLGMCPQHNI--LFHHLT 1019

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  460 VYDVIAEPLRANGFHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:TIGR01257 1020 VAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK-RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1424538268  540 GIVNLLldLQRRFGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQG 585
Cdd:TIGR01257 1099 SIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142

livF

PRK11614

high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;

20-234

1.04e-10

high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;

Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 62.20 E-value: 1.04e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEYARVS-GSIRLHGKELlglSDHAMSQIRGRMIGTVFQDP 98
Cdd:PRK11614   17 KIQALHEVSLHINQGEIVTLIGANGAGKTT----LLGTLCGDPRATsGRIVFDGKDI---TDWQTAKIMREAVAIVPEGR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  99 --MSALTpvytigdqIAEAIEIHSREISRADARRRAVELLELVGIAQPERRARAfpHELSGGERQRVVIAIAIANDPDLL 176
Cdd:PRK11614   90 rvFSRMT--------VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRA--GTMSGGEQQMLAIGRALMSQPRLL 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268 177 ICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEFADRALVMYAGRPV 234
Cdd:PRK11614  160 LLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVV 216

PRK13546

teichoic acids export ABC transporter ATP-binding subunit TagH;

381-597

1.05e-10

teichoic acids export ABC transporter ATP-binding subunit TagH;

Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 62.53 E-value: 1.05e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGtDVAVLDAAarrrlrtelqvvfqdpvASLDPRLPV 460
Cdd:PRK13546   41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAIS-----------------AGLSGQLTG 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEPLRANGFHRHECEERVAELLAVVGLD---HSDASRYpaefSGGQKQRIGIARALALQPKILALDEPVSALDVSI 537
Cdd:PRK13546  103 IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGefiYQPVKKY----SSGMRAKLGFSINITVNPDILVIDEALSVGDQTF 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 538 QAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFtnPQHE 597
Cdd:PRK13546  179 AQKCLDKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL--PKYE 235

rim_protein

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...

22-232

1.71e-10

Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 64.65 E-value: 1.71e-10

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELlglsDHAMSQIRgRMIGTVFQDpmSA 101
Cdd:TIGR01257  944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP---TSGTVLVGGKDI----ETNLDAVR-QSLGMCPQH--NI 1013

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  102 LTPVYTIGDQIAEAIEIHSReiSRADARRRAVELLELVGIAQpERRARAfpHELSGGERQRVVIAIAIANDPDLLICDEP 181
Cdd:TIGR01257 1014 LFHHLTVAEHILFYAQLKGR--SWEEAQLEMEAMLEDTGLHH-KRNEEA--QDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1424538268  182 TTALDVTVQAQILDVLRTARdvTGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:TIGR01257 1089 TSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGR 1137

xylG

TIGR02633

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...

24-232

1.73e-10

Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 63.69 E-value: 1.73e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  24 VRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyARVSGSIRLHGKELlgLSDHAMSQIRGRmIGTVFQD-PMSAL 102
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP--GKFEGNVFINGKPV--DIRNPAQAIRAG-IAMVPEDrKRHGI 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 103 TPVYTIGDQIAEAIEIHSREISRADArrrAVElLELVGIAQPERRARAFPHE-----LSGGERQRVVIAIAIANDPDLLI 177
Cdd:TIGR02633 351 VPILGVGKNITLSVLKSFCFKMRIDA---AAE-LQIIGSAIQRLKVKTASPFlpigrLSGGNQQKAVLAKMLLTNPRVLI 426

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 178 CDEPTTALDVTVQAQILDVL-RTARDvtGAAVLIITHDLGVVSEFADRALVMYAGR 232
Cdd:TIGR02633 427 LDEPTRGVDVGAKYEIYKLInQLAQE--GVAIIVVSSELAEVLGLSDRVLVIGEGK 480

PRK09984

phosphonate ABC transporter ATP-binding protein;

1-231

2.15e-10

phosphonate ABC transporter ATP-binding protein;

Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 61.57 E-value: 2.15e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   1 MTAVLEVTDLNVTFETEDievpAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRLHGKELLGLSD 80
Cdd:PRK09984    1 MQTIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  81 HAMSQIRGRM-IGTVFQ-----DPMSALTPVYTIGDQIAEAIEIHSREISRADaRRRAVELLELVGIAQperraraFPHE 154
Cdd:PRK09984   77 LARDIRKSRAnTGYIFQqfnlvNRLSVLENVLIGALGSTPFWRTCFSWFTREQ-KQRALQALTRVGMVH-------FAHQ 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 ----LSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYA 230
Cdd:PRK09984  149 rvstLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228


                  .
gi 1424538268 231 G 231
Cdd:PRK09984  229 G 229

ABC_RNaseL_inhibitor_domain2

cd03237

The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...

384-575

3.07e-10

Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 60.88 E-value: 3.07e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 384 SFTLE-------QGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVldaaARRRLRTELQVVFQDPVASLDP 456
Cdd:cd03237    12 EFTLEveggsisESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY----KPQYIKADYEGTVRDLLSSITK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 457 RL---PVYDV-IAEPLRANGFHrhecEERVAELlavvgldhsdasrypaefSGGQKQRIGIARALALQPKILALDEPVSA 532
Cdd:cd03237    88 DFythPYFKTeIAKPLQIEQIL----DREVPEL------------------SGGELQRVAIAACLSKDADIYLLDEPSAY 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1424538268 533 LDVSiQAGIVNLLLdlqRRFGL----SYLFVSHDLSVVKHLAHRVAV 575
Cdd:cd03237   146 LDVE-QRLMASKVI---RRFAEnnekTAFVVEHDIIMIDYLADRLIV 188

PRK13540

cytochrome c biogenesis protein CcmA; Provisional

383-567

4.53e-10

cytochrome c biogenesis protein CcmA; Provisional

Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 59.58 E-value: 4.53e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVavldaaARRRLRTELQVVFQDPVASLDPRLpvyd 462
Cdd:PRK13540   20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI------KKDLCTYQKQLCFVGHRSGINPYL---- 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 viaePLRANGF---HRHECEERVAELLAVVGLDHsdASRYPAE-FSGGQKQRIGIARALALQPKILALDEPVSALDvsiQ 538
Cdd:PRK13540   90 ----TLRENCLydiHFSPGAVGITELCRLFSLEH--LIDYPCGlLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---E 160

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1424538268 539 AGIVNLLLDLQ--RRFGLSYLFVSH-DLSVVK 567
Cdd:PRK13540  161 LSLLTIITKIQehRAKGGAVLLTSHqDLPLNK 192

GguA

sugar ABC transporter ATP-binding protein;

4-232

4.65e-10

sugar ABC transporter ATP-binding protein;

Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 62.11 E-value: 4.65e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVtFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGllPEYAR-VSGSIRLHGKEL------- 75
Cdd:NF040905  257 VFEVKNWTV-YHPLHPERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFG--RSYGRnISGTVFKDGKEVdvstvsd 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  76 ---------------LGLsdHAMSQIRgRMIgtvfqdPMSALTPVYTIGdQIAEAIEIHSREISRADARRRAVELLELVG 140
Cdd:NF040905  334 aidaglayvtedrkgYGL--NLIDDIK-RNI------TLANLGKVSRRG-VIDENEEIKVAEEYRKKMNIKTPSVFQKVG 403

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 141 iaqperrarafphELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSE 220
Cdd:NF040905  404 -------------NLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAA-EGKGVIVISSELPELLG 469

                         250
                  ....*....|..
gi 1424538268 221 FADRALVMYAGR 232
Cdd:NF040905  470 MCDRIYVMNEGR 481

rim_protein

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...

345-579

6.26e-10

Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 62.72 E-value: 6.26e-10

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  345 AGGQPPVVLRVSDLTKTYRLTKGVVVrrrvgevravDGISFTLEQGRTLGIVGESGSGKSTTLNQIleltkpeAGSIEIL 424
Cdd:TIGR01257 1930 SGGNKTDILRLNELTKVYSGTSSPAV----------DRLCVGVRPGECFGLLGVNGAGKTTTFKML-------TGDTTVT 1992

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  425 GTDVAVldaaARRRLRTELQVVFQDPvasldPRLPVYDVIAEPL----------RANGFHRHECEERVAELLAVVGLDHS 494
Cdd:TIGR01257 1993 SGDATV----AGKSILTNISDVHQNM-----GYCPQFDAIDDLLtgrehlylyaRLRGVPAEEIEKVANWSIQSLGLSLY 2063

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  495 dASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVA 574
Cdd:TIGR01257 2064 -ADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLA 2141


                   ....*
gi 1424538268  575 VMYRG 579
Cdd:TIGR01257 2142 IMVKG 2146

MRP_assoc_pro

multi drug resistance-associated protein (MRP); This model describes multi drug ...

7-242

1.16e-09

Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 61.50 E-value: 1.16e-09

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268    7 VTDLNVTFETEDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAvigLLPEYARVSGSIRLHGkellglsdhamsqi 86
Cdd:TIGR00957  637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSA---LLAEMDKVEGHVHMKG-------------- 699

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   87 rgrmigTVFQDPMSAltpvYTIGDQIAEAIEI-HSREISRADARRRAVELLE----LVGIAQPERRARAFphELSGGERQ 161
Cdd:TIGR00957  700 ------SVAYVPQQA----WIQNDSLRENILFgKALNEKYYQQVLEACALLPdleiLPSGDRTEIGEKGV--NLSGGQKQ 767

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  162 RVVIAIAIANDPDLLICDEPTTALDVTVQAQILD-VLRTARDVTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVD 240
Cdd:TIGR00957  768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEhVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQ 846


                   ..
gi 1424538268  241 EL 242
Cdd:TIGR00957  847 EL 848

40850658_otr

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;

475-616

1.45e-09

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;

Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 60.13 E-value: 1.45e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 475 RHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIVNLLLDLQRRfGL 554
Cdd:NF000106  118 RKDARARADELLERFSLTEA-AGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GA 195

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 555 SYLFVSHDLSVVKHLAHRVAVMYRGMIVEQGESDQVFTN---------PQHEYT-RRLLAAVPRAHSDVASG 616
Cdd:NF000106  196 TVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKvggrtlqirPAHAAElDRMVGAIAQAGLDGIAG 267

PLN03073

ABC transporter F family; Provisional

384-535

1.75e-09

ABC transporter F family; Provisional

Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 60.64 E-value: 1.75e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 384 SFTLEQGRTLGIVGESGSGKSTTLN--------------QILELTKpeagsiEILGTDVAVL------DAAARRRLRTEL 443
Cdd:PLN03073  197 SVTLAFGRHYGLVGRNGTGKTTFLRymamhaidgipkncQILHVEQ------EVVGDDTTALqcvlntDIERTQLLEEEA 270

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 444 QVVFQD-----PVASLDPRLPVY-----DVIAEPL-----RANGFHRHECEERVAELLAVVGLDHSDASRYPAEFSGGQK 508
Cdd:PLN03073  271 QLVAQQrelefETETGKGKGANKdgvdkDAVSQRLeeiykRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWR 350

                         170       180
                  ....*....|....*....|....*..
gi 1424538268 509 QRIGIARALALQPKILALDEPVSALDV 535
Cdd:PLN03073  351 MRIALARALFIEPDLLLLDEPTNHLDL 377

Rli1

COG1245

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...

386-577

2.53e-09

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];

Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 60.18 E-value: 2.53e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 386 TLEQGRTLGIVGESGSGKSTTLNqIL--ELtKPEAGSIEILGTDVAVLDaaarrRLR-TELQVVFQDpVASLDPRL---P 459
Cdd:COG1245    95 VPKKGKVTGILGPNGIGKSTALK-ILsgEL-KPNLGDYDEEPSWDEVLK-----RFRgTELQDYFKK-LANGEIKVahkP 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 460 VY-DVIaePLRANGfhrheceeRVAELLAVV-------------GLDHSdASRYPAEFSGGQKQRIGIARALALQPKILA 525
Cdd:COG1245   167 QYvDLI--PKVFKG--------TVRELLEKVdergkldelaeklGLENI-LDRDISELSGGELQRVAIAAALLRDADFYF 235

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1424538268 526 LDEPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMY 577
Cdd:COG1245   236 FDEPSSYLDIYQRLNVARLIRELAEE-GKYVLVVEHDLAILDYLADYVHILY 286

PRK13538

cytochrome c biogenesis heme-transporting ATPase CcmA;

381-535

3.57e-09

cytochrome c biogenesis heme-transporting ATPase CcmA;

Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 57.12 E-value: 3.57e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKsTTLNQILE-LTKPEAGSIEILGTDVavldaaarRRLRTELQvvfQDP-----VASL 454
Cdd:PRK13538   18 SGLSFTLNAGELVQIEGPNGAGK-TSLLRILAgLARPDAGEVLWQGEPI--------RRQRDEYH---QDLlylghQPGI 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 455 DPRLPVYdviaEPLRAN-GFHRHECEERVAELLAVVGL-DHSDAsryPAE-FSGGQKQRIGIARALALQPKILALDEPVS 531
Cdd:PRK13538   86 KTELTAL----ENLRFYqRLHGPGDDEALWEALAQVGLaGFEDV---PVRqLSAGQQRRVALARLWLTRAPLWILDEPFT 158


                  ....
gi 1424538268 532 ALDV 535
Cdd:PRK13538  159 AIDK 162

PRK10938

putative molybdenum transport ATP-binding protein ModF; Provisional

28-228

4.22e-09

putative molybdenum transport ATP-binding protein ModF; Provisional

Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 59.26 E-value: 4.22e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYarvSGSIRLHGKELLGLSDHAMSQIrgrmIGTVFQDPMSALTPVYT 107
Cdd:PRK10938   23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKL----VSDEWQRNNTDMLSPGE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 108 --IGDQIAEAIEIHSREISRADarrravELLELVGIAQP-ERRaraFPHeLSGGERQRVVIAIAIANDPDLLICDEPTTA 184
Cdd:PRK10938   96 ddTGRTTAEIIQDEVKDPARCE------QLAQQFGITALlDRR---FKY-LSTGETRKTLLCQALMSEPDLLILDEPFDG 165

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1424538268 185 LDVTVQAQILDVLRTARDVTGAAVLIIT--HDlgvVSEFADRALVM 228
Cdd:PRK10938  166 LDVASRQQLAELLASLHQSGITLVLVLNrfDE---IPDFVQFAGVL 208

ABCC_CFTR2

cd03289

ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ...

383-538

4.73e-09

ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 57.94 E-value: 4.73e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEaGSIEILGTDvavLDAAARRRLRTELQVVFQDpvasldprlpVYd 462
Cdd:cd03289    23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVS---WNSVPLQKWRKAFGVIPQK----------VF- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPLRAN----GFHRHECEERVAEllaVVGLdHSDASRYPAE-----------FSGGQKQRIGIARALALQPKILALD 527
Cdd:cd03289    88 IFSGTFRKNldpyGKWSDEEIWKVAE---EVGL-KSVIEQFPGQldfvlvdggcvLSHGHKQLMCLARSVLSKAKILLLD 163

                         170
                  ....*....|..
gi 1424538268 528 EPVSALD-VSIQ 538
Cdd:cd03289   164 EPSAHLDpITYQ 175

ABCC_SUR1_N

cd03290

ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ...

383-580

5.72e-09

ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 56.57 E-value: 5.72e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEiLGTDVAVLDAAARRRLRTELQVVFqdpvASLDPRLPVYD 462
Cdd:cd03290    20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH-WSNKNESEPSFEATRSRNRYSVAY----AAQKPWLLNAT 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 VIAEPLRANGFH--RHECEERVAELLAVVGL----DHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:cd03290    95 VEENITFGSPFNkqRYKAVTDACSLQPDIDLlpfgDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1424538268 537 I-----QAGIVNLLLDLQRrfglSYLFVSHDLSVVKHlAHRVAVMYRGM 580
Cdd:cd03290   175 LsdhlmQEGILKFLQDDKR----TLVLVTHKLQYLPH-ADWIIAMKDGS 218

3a01203

TIGR00954

Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ...

383-568

5.78e-09

Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]

Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 58.99 E-value: 5.78e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTtLNQIL---------ELTKPEAGSIEILGTDVAVldaaARRRLRTelQVVFQDPVas 453
Cdd:TIGR00954 471 LSFEVPSGNNLLICGPNGCGKSS-LFRILgelwpvyggRLTKPAKGKLFYVPQRPYM----TLGTLRD--QIIYPDSS-- 541

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 454 ldprlpvydviaEPLRANGFHRHECEErvaeLLAVVGLDH--------SDASRYPAEFSGGQKQRIGIARALALQPKILA 525
Cdd:TIGR00954 542 ------------EDMKRRGLSDKDLEQ----ILDNVQLTHilereggwSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1424538268 526 LDEPVSALDVSIQAGIVNLLldlqRRFGLSYLFVSHDLSVVKH 568
Cdd:TIGR00954 606 LDECTSAVSVDVEGYMYRLC----REFGITLFSVSHRKSLWKY 644

ABCG_EPDR

cd03213

Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ...

350-585

5.96e-09

Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 56.02 E-value: 5.96e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 350 PVVLRVSDLTKTyrltkgVVVRRRVGEVRAVDGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEA--GSIEILGTD 427
Cdd:cd03213     1 GVTLSFRNLTVT------VKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGRP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 428 VAvldaaaRRRLRTELQVVFQDPVasLDPRLPVY---DVIAEpLRangfhrheceervaellavvGLdhsdasrypaefS 504
Cdd:cd03213    75 LD------KRSFRKIIGYVPQDDI--LHPTLTVRetlMFAAK-LR--------------------GL------------S 113

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 505 GGQKQRIGIARALALQPKILALDEPVSALDvsiqAGIVNLLLDLQRRF---GLSYLFVSHDLS-VVKHLAHRVAVMYRGM 580
Cdd:cd03213   114 GGERKRVSIALELVSNPSLLFLDEPTSGLD----SSSALQVMSLLRRLadtGRTIICSIHQPSsEIFELFDKLLLLSQGR 189


                  ....*
gi 1424538268 581 IVEQG 585
Cdd:cd03213   190 VIYFG 194

ABCG_PDR_domain2

cd03232

Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ...

18-213

6.30e-09

Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 56.10 E-value: 6.30e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  18 DIEVPAVR-----GTSYHIDPGEVLAIVGESGCGKTTaALAVIGLLPEYARVSGSIRLHGKELlglsDHAMSqirgRMIG 92
Cdd:cd03232    12 TVPVKGGKrqllnNISGYVKPGTLTALMGESGAGKTT-LLDVLAGRKTAGVITGEILINGRPL----DKNFQ----RSTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  93 TVFQdpMSALTPVYTigdqIAEAIEIHsreisrADARrravellelvgiaqperrarafphELSGGERQRVVIAIAIAND 172
Cdd:cd03232    83 YVEQ--QDVHSPNLT----VREALRFS------ALLR------------------------GLSVEQRKRLTIGVELAAK 126

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1424538268 173 PDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITH 213
Cdd:cd03232   127 PSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIH 166

MRP_assoc_pro

multi drug resistance-associated protein (MRP); This model describes multi drug ...

17-252

1.08e-08

Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 58.42 E-value: 1.08e-08

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   17 EDIEVpAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLpEYARvsGSIRLHGkelLGLSDHAMSQIRGRmIGTVFQ 96
Cdd:TIGR00957 1296 EDLDL-VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAE--GEIIIDG---LNIAKIGLHDLRFK-ITIIPQ 1367

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   97 DPM-------SALTPVYTIGDQiaeaiEIHSreisradarrrAVELLELVGI--AQPERraraFPHE-------LSGGER 160
Cdd:TIGR00957 1368 DPVlfsgslrMNLDPFSQYSDE-----EVWW-----------ALELAHLKTFvsALPDK----LDHEcaeggenLSVGQR 1427

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  161 QRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvtGAAVLIITHDLGVVSEFAdRALVMYAGRPVEIAAVD 240
Cdd:TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPS 1504

                          250
                   ....*....|..
gi 1424538268  241 ELYRDRRMPYTV 252
Cdd:TIGR00957 1505 NLLQQRGIFYSM 1516

PRK11147

ABC transporter ATPase component; Reviewed

4-214

1.09e-08

ABC transporter ATPase component; Reviewed

Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 58.04 E-value: 1.09e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNVTFETEDIevpaVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIG-LLPEyarvSGSIRLHGKELLGLSDha 82
Cdd:PRK11147  319 VFEMENVNYQIDGKQL----VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGqLQAD----SGRIHCGTKLEVAYFD-- 388

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  83 msQIRgrmigtvfqdpmSALTPVYTIGDQIAEA---IEIHSREisradarrRAVellelVGIAQ----PERRARAFPHEL 155
Cdd:PRK11147  389 --QHR------------AELDPEKTVMDNLAEGkqeVMVNGRP--------RHV-----LGYLQdflfHPKRAMTPVKAL 441

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268 156 SGGERQRVVIAIAIANDPDLLICDEPTTALDVtvqaQILDVLRTARDVTGAAVLIITHD 214
Cdd:PRK11147  442 SGGERNRLLLARLFLKPSNLLILDEPTNDLDV----ETLELLEELLDSYQGTVLLVSHD 496

PLN03232

ABC transporter C family member; Provisional

383-593

2.29e-08

ABC transporter C family member; Provisional

Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 57.29 E-value: 2.29e-08

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  383 ISFTLEQGRTLGIVGESGSGKSTTLNQIL-ELTKPEAGSIEILGTDVAVldaaarrrlrtelqvvfqdpvasldPRLPVy 461
Cdd:PLN03232   636 INLEIPVGSLVAIVGGTGEGKTSLISAMLgELSHAETSSVVIRGSVAYV-------------------------PQVSW- 689

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  462 dVIAEPLRANGFHRHECE-ERVAELLAVVGLDHsDASRYPAE-----------FSGGQKQRIGIARALALQPKILALDEP 529
Cdd:PLN03232   690 -IFNATVRENILFGSDFEsERYWRAIDVTALQH-DLDLLPGRdlteigergvnISGGQKQRVSMARAVYSNSDIYIFDDP 767

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268  530 VSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKhLAHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PLN03232   768 LSALDAHVAHQVFDSCMKDELK-GKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSKS 829

ABCC_SUR1_N

cd03290

ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ...

21-231

2.53e-08

Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 54.64 E-value: 2.53e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  21 VPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGllpEYARVSGSIRLHGKELLGLSDHAMSQIRGRMIGTVFQDPms 100
Cdd:cd03290    14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG---EMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP-- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 101 altpvYTIGDQIAEAIEIHS-------REISRADARRRAVELLELVGiaQPERRARAFphELSGGERQRVVIAIAIANDP 173
Cdd:cd03290    89 -----WLLNATVEENITFGSpfnkqryKAVTDACSLQPDIDLLPFGD--QTEIGERGI--NLSGGQRQRICVARALYQNT 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268 174 DLLICDEPTTALDV-----TVQAQILDVLRTARdvtgAAVLIITHDLGVVSEfADRALVMYAG 231
Cdd:cd03290   160 NIVFLDDPFSALDIhlsdhLMQEGILKFLQDDK----RTLVLVTHKLQYLPH-ADWIIAMKDG 217

PRK13409

ribosome biogenesis/translation initiation ATPase RLI;

386-577

2.66e-08

ribosome biogenesis/translation initiation ATPase RLI;

Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 56.74 E-value: 2.66e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 386 TLEQGRTLGIVGESGSGKSTTLNqIL--ELtKPEAGSIEILGTDVAVLDAAARrrlrTELQVVFQDpVASLDPRL---PV 460
Cdd:PRK13409   95 IPKEGKVTGILGPNGIGKTTAVK-ILsgEL-IPNLGDYEEEPSWDEVLKRFRG----TELQNYFKK-LYNGEIKVvhkPQ 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 Y-DVIAEPLRANgfhrheceerVAELLAVV-------------GLDHSdASRYPAEFSGGQKQRIGIARALALQPKILAL 526
Cdd:PRK13409  168 YvDLIPKVFKGK----------VRELLKKVdergkldevverlGLENI-LDRDISELSGGELQRVAIAAALLRDADFYFF 236

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 527 DEPVSALDVSIQAGIVNLLLDLQRrfGLSYLFVSHDLSVVKHLAHRVAVMY 577
Cdd:PRK13409  237 DEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAY 285

ABC_CcmA_heme_exporter

cd03231

Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ...

26-218

3.49e-08

Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 54.04 E-value: 3.49e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  26 GTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELlglsDHAMSQIRGRMIGTVFQDPM-SALTP 104
Cdd:cd03231    18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPL----DFQRDSIARGLLYLGHAPGIkTTLSV 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 105 VYTIgdqiaeaieihsREISRADARRRAVELLELVGIAQPERRArafPHELSGGERQRVVIAIAIANDPDLLICDEPTTA 184
Cdd:cd03231    91 LENL------------RFWHADHSDEQVEEALARVGLNGFEDRP---VAQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1424538268 185 LDVTVQAQILDVLRTARDVTGAAVLIITHDLGVV 218
Cdd:cd03231   156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189

PRK10982

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

4-236

4.17e-08

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 55.89 E-value: 4.17e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   4 VLEVTDLNvtfeteDIEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPeyaRVSGSIRLHGKELlglSDHAM 83
Cdd:PRK10982  250 ILEVRNLT------SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKI---NNHNA 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  84 SQIRGRMIGTVFQDPMSalTPVYTIGDqiaeaIEIHSReISRADARRRAVELLELVGIAQPER------RARAFPHE--- 154
Cdd:PRK10982  318 NEAINHGFALVTEERRS--TGIYAYLD-----IGFNSL-ISNIRNYKNKVGLLDNSRMKSDTQwvidsmRVKTPGHRtqi 389

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 155 --LSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILD-VLRTARDVTGaaVLIITHDLGVVSEFADRALVMYAG 231
Cdd:PRK10982  390 gsLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQlIAELAKKDKG--IIIISSEMPELLGITDRILVMSNG 467


                  ....*
gi 1424538268 232 RPVEI 236
Cdd:PRK10982  468 LVAGI 472

ABC2_perm_RbbA

ribosome-associated ATPase/putative transporter RbbA;

23-186

4.34e-08

ribosome-associated ATPase/putative transporter RbbA;

Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 56.29 E-value: 4.34e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  23 AVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEyarVSGSIRLHGKELlGLSDHA-------MSQ---IRGRMig 92
Cdd:NF033858  281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPA---SEGEAWLFGQPV-DAGDIAtrrrvgyMSQafsLYGEL-- 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  93 TVFQDpmsaltpvytigdqiaeaIEIHSR--EISRADARRRAVELLELVGIAQperRARAFPHELSGGERQRVVIAIAIA 170
Cdd:NF033858  355 TVRQN------------------LELHARlfHLPAAEIAARVAEMLERFDLAD---VADALPDSLPLGIRQRLSLAVAVI 413

                         170
                  ....*....|....*.
gi 1424538268 171 NDPDLLICDEPTTALD 186
Cdd:NF033858  414 HKPELLILDEPTSGVD 429

ABC_RNaseL_inhibitor

cd03222

ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ...

154-233

4.72e-08

ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 53.34 E-value: 4.72e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 154 ELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDVTGAAVLIITHDLGVVSEFADRALVMYaGRP 233
Cdd:cd03222    71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE-GEP 149

ABC_RNaseL_inhibitor_domain1

cd03236

The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...

390-577

5.27e-08

Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 54.29 E-value: 5.27e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 390 GRTLGIVGESGSGKSTTLnQIL--ELtKPEAGSIEILGTDVAVLDAAARrrlrTELQVVFQDPV-ASLDP-RLPVY-DVI 464
Cdd:cd03236    26 GQVLGLVGPNGIGKSTAL-KILagKL-KPNLGKFDDPPDWDEILDEFRG----SELQNYFTKLLeGDVKViVKPQYvDLI 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 465 aePLRANG-----FHRHECEERVAELLAVVGLDHSdASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:cd03236   100 --PKAVKGkvgelLKKKDERGKLDELVDQLELRHV-LDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1424538268 540 GIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMY 577
Cdd:cd03236   177 NAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY 213

PTZ00243

ABC transporter; Provisional

382-615

6.17e-08

ABC transporter; Provisional

Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 55.94 E-value: 6.17e-08

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  382 GISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAvldAAARRRLRTELQVVFQDPV-------ASL 454
Cdd:PTZ00243  1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIG---AYGLRELRRQFSMIPQDPVlfdgtvrQNV 1404

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  455 DPRLPvydviAEPlrangfhrheceERVAELLAVVGLDHSDASRYP----------AEFSGGQKQRIGIARALALQPK-- 522
Cdd:PTZ00243  1405 DPFLE-----ASS------------AEVWAALELVGLRERVASESEgidsrvleggSNYSVGQRQLMCMARALLKKGSgf 1467

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  523 ILaLDEPVS----ALDVSIQAGIVNllldlqrrfglsyLFVSHDLSVVKHLAHRVA------VMYRGMIVEQGESDQVFT 592
Cdd:PTZ00243  1468 IL-MDEATAnidpALDRQIQATVMS-------------AFSAYTVITIAHRLHTVAqydkiiVMDHGAVAEMGSPRELVM 1533

                          250       260
                   ....*....|....*....|...
gi 1424538268  593 NPQHEYTRRLLAAVPRAHSDVAS 615
Cdd:PTZ00243  1534 NRQSIFHSMVEALGRSEAKRFLQ 1556

ABCC_CFTR1

cd03291

ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ...

22-195

6.60e-08

ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 54.48 E-value: 6.60e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGllpEYARVSGSIRLHGKelLGLSdhamSQIRGRMIGTVFQDPMSA 101
Cdd:cd03291    51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG---ELEPSEGKIKHSGR--ISFS----SQFSWIMPGTIKENIIFG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 102 LtpvytigdqiaeaieihsreiSRADARRRAVellelVGIAQPERRARAFPHE-----------LSGGERQRVVIAIAIA 170
Cdd:cd03291   122 V---------------------SYDEYRYKSV-----VKACQLEEDITKFPEKdntvlgeggitLSGGQRARISLARAVY 175

                         170       180
                  ....*....|....*....|....*
gi 1424538268 171 NDPDLLICDEPTTALDVTVQAQILD 195
Cdd:cd03291   176 KDADLYLLDSPFGYLDVFTEKEIFE 200

PRK11147

ABC transporter ATPase component; Reviewed

384-562

7.52e-08

ABC transporter ATPase component; Reviewed

Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 55.34 E-value: 7.52e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 384 SFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEIlGT--DVAVLDaaaRRRlrtelqvvfqdpvASLDPRLPVY 461
Cdd:PRK11147  339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTklEVAYFD---QHR-------------AELDPEKTVM 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 DVIAE---PLRANGFHRHeceervaellaVVG-----LDHSDASRYPAE-FSGGQKQRIGIARaLALQP-KILALDEPVS 531
Cdd:PRK11147  402 DNLAEgkqEVMVNGRPRH-----------VLGylqdfLFHPKRAMTPVKaLSGGERNRLLLAR-LFLKPsNLLILDEPTN 469

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1424538268 532 ALDVSiqagIVNLLLDLQRRFGLSYLFVSHD 562
Cdd:PRK11147  470 DLDVE----TLELLEELLDSYQGTVLLVSHD 496

PLN03130

ABC transporter C family member; Provisional

20-242

8.39e-08

ABC transporter C family member; Provisional

Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 55.51 E-value: 8.39e-08

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   20 EVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRlhgkellglsdhamsqirgrmiGTVFQDPM 99
Cdd:PLN03130   629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR----------------------GTVAYVPQ 686

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  100 SALTPVYTIGDQIAEAIEIHSREISRA---DARRRAVELLElvGIAQPERRARAFphELSGGERQRVVIAIAIANDPDLL 176
Cdd:PLN03130   687 VSWIFNATVRDNILFGSPFDPERYERAidvTALQHDLDLLP--GGDLTEIGERGV--NISGGQKQRVSMARAVYSNSDVY 762

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268  177 ICDEPTTALDVTVQAQILD-VLRtaRDVTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDEL 242
Cdd:PLN03130   763 IFDDPLSALDAHVGRQVFDkCIK--DELRGKTRVLVTNQLHFLSQ-VDRIILVHEGMIKEEGTYEEL 826

MRP_assoc_pro

multi drug resistance-associated protein (MRP); This model describes multi drug ...

381-585

9.06e-08

Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 55.72 E-value: 9.06e-08

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  381 DGISFTLEQGRTLGIVGESGSGKSTTLNQIL-ELTKPEaGSIEILGTDVAVLDAAARRRLRTELQVVFQDPvasLDPrlP 459
Cdd:TIGR00957  655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLaEMDKVE-GHVHMKGSVAYVPQQAWIQNDSLRENILFGKA---LNE--K 728

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  460 VYDVIAEPlrangfhrheCEeRVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 539
Cdd:TIGR00957  729 YYQQVLEA----------CA-LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1424538268  540 GIVNLLLDLQRRF-GLSYLFVSHDLSVVKHLaHRVAVMYRGMIVEQG 585
Cdd:TIGR00957  798 HIFEHVIGPEGVLkNKTRILVTHGISYLPQV-DVIIVMSGGKISEMG 843

ABCC_SUR2

cd03288

ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ...

390-583

9.95e-08

ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 53.37 E-value: 9.95e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 390 GRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAaarRRLRTELQVVFQDPVA-------SLDPRLPVYD 462
Cdd:cd03288    47 GQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL---HTLRSRLSIILQDPILfsgsirfNLDPECKCTD 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 463 -VIAEPLRangfhrheceerVAELLAVV-----GLDhSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 536
Cdd:cd03288   124 dRLWEALE------------IAQLKNMVkslpgGLD-AVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 537 IQagivNLlldLQRRFGLSYLfvshDLSVVKhLAHRVA---------VMYRGMIVE 583
Cdd:cd03288   191 TE----NI---LQKVVMTAFA----DRTVVT-IAHRVStildadlvlVLSRGILVE 234

CFTR_protein

TIGR01271

cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ...

383-538

1.03e-07

cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]

Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 55.30 E-value: 1.03e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEaGSIEILGTDvavLDAAARRRLRTELQVVFQDpvasldprlpVYd 462
Cdd:TIGR01271 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVS---WNSVTLQTWRKAFGVIPQK----------VF- 1302

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  463 VIAEPLRAN--GFHRHECEE--RVAEllaVVGLdHSDASRYPAE-----------FSGGQKQRIGIARALALQPKILALD 527
Cdd:TIGR01271 1303 IFSGTFRKNldPYEQWSDEEiwKVAE---EVGL-KSVIEQFPDKldfvlvdggyvLSNGHKQLMCLARSILSKAKILLLD 1378

                          170
                   ....*....|..
gi 1424538268  528 EPVSALD-VSIQ 538
Cdd:TIGR01271 1379 EPSAHLDpVTLQ 1390

AAA

smart00382

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...

33-236

1.46e-07

Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 1.46e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   33 PGEVLAIVGESGCGKTTAALAVIGLLPEYARVSgsirlhgkellglsdhamsqirgrmigtvfqdpmsaltpVYTIGDQI 112
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV---------------------------------------IYIDGEDI 41

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  113 AEAIEIHSREISRADarrravellelvgiaqperraraFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQ 192
Cdd:smart00382  42 LEEVLDQLLLIIVGG-----------------------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL 98

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1424538268  193 ILDVLRTARDV-----TGAAVLIITHDlgvVSEFADRALVMYAGRPVEI 236
Cdd:smart00382  99 LLLLEELRLLLllkseKNLTVILTTND---EKDLGPALLRRRFDRRIVL 144

3a01204

TIGR00955

The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ...

382-589

1.71e-07

The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]

Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 54.28 E-value: 1.71e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNqilELTKPEAGSIEILGTDVAVLDAAARRRLRTELQVVFQDPVasLDPRLPVY 461
Cdd:TIGR00955  43 NVSGVAKPGELLAVMGSSGAGKTTLMN---ALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL--FIPTLTVR 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 D--VIAEPLRangFHRH----ECEERVAELLAVVGLDHSDASRYPAE-----FSGGQKQRIGIARALALQPKILALDEPV 530
Cdd:TIGR00955 118 EhlMFQAHLR---MPRRvtkkEKRERVDEVLQALGLRKCANTRIGVPgrvkgLSGGERKRLAFASELLTDPPLLFCDEPT 194

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 531 SALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSV-VKHLAHRVAVMYRGMIVEQGESDQ 589
Cdd:TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSeLFELFDKIILMAEGRVAYLGSPDQ 253

PLN03211

ABC transporter G-25; Provisional

381-551

1.99e-07

ABC transporter G-25; Provisional

Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 54.12 E-value: 1.99e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQIleltkpeAGSIEILGTDVAVL--DAAARRRLRTELQVVFQDPVasLDPRL 458
Cdd:PLN03211   85 NGVTGMASPGEILAVLGPSGSGKSTLLNAL-------AGRIQGNNFTGTILanNRKPTKQILKRTGFVTQDDI--LYPHL 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 PVYD--VIAEPLRANGFHRHECEERVAE-LLAVVGLDHSDASRYPAEF----SGGQKQRIGIARALALQPKILALDEPVS 531
Cdd:PLN03211  156 TVREtlVFCSLLRLPKSLTKQEKILVAEsVISELGLTKCENTIIGNSFirgiSGGERKRVSIAHEMLINPSLLILDEPTS 235

                         170       180
                  ....*....|....*....|
gi 1424538268 532 ALDVSIQAGIVNLLLDLQRR 551
Cdd:PLN03211  236 GLDATAAYRLVLTLGSLAQK 255

PRK10982

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

383-589

3.59e-07

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 53.19 E-value: 3.59e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 383 ISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDA-----------AARRR---LRTELQVVFQ 448
Cdd:PRK10982  267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNAneainhgfalvTEERRstgIYAYLDIGFN 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 449 DPVASLDPRLPVYDVIAEplrangfHRHECEER-VAELLAVVGLDHSDASrypAEFSGGQKQRIGIARALALQPKILALD 527
Cdd:PRK10982  347 SLISNIRNYKNKVGLLDN-------SRMKSDTQwVIDSMRVKTPGHRTQI---GSLSGGNQQKVIIGRWLLTQPEILMLD 416

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1424538268 528 EPVSALDVSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLAHRVAVMYRGM---IVEQGESDQ 589
Cdd:PRK10982  417 EPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLvagIVDTKTTTQ 480

CFTR_protein

TIGR01271

cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ...

22-195

3.63e-07

Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 53.76 E-value: 3.63e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGllpEYARVSGSIRLHGKelLGLSdhamSQIRGRMIGTvfqdpmsa 101
Cdd:TIGR01271  440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG---ELEPSEGKIKHSGR--ISFS----PQTSWIMPGT-------- 502

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  102 ltpvytIGDQIAEAIeihsreiSRADARRRAVellelVGIAQPERRARAFPHE-----------LSGGERQRVVIAIAIA 170
Cdd:TIGR01271  503 ------IKDNIIFGL-------SYDEYRYTSV-----IKACQLEEDIALFPEKdktvlgeggitLSGGQRARISLARAVY 564

                          170       180
                   ....*....|....*....|....*
gi 1424538268  171 NDPDLLICDEPTTALDVTVQAQILD 195
Cdd:TIGR01271  565 KDADLYLLDSPFTHLDVVTEKEIFE 589

PRK13538

cytochrome c biogenesis heme-transporting ATPase CcmA;

25-220

3.98e-07

cytochrome c biogenesis heme-transporting ATPase CcmA;

Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 50.96 E-value: 3.98e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  25 RGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYArvsGSIRLHGKELLGLSDHamsqirgrmigtvFQDPM----- 99
Cdd:PRK13538   18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDE-------------YHQDLlylgh 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 100 -----SALTPVYTIgdQIAEAIeihSREISRADARrravELLELVGIAqpeRRARAFPHELSGGERQRVVIAIAIANDPD 174
Cdd:PRK13538   82 qpgikTELTALENL--RFYQRL---HGPGDDEALW----EALAQVGLA---GFEDVPVRQLSAGQQRRVALARLWLTRAP 149

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1424538268 175 LLICDEPTTALDVTVQAQILDVLR--TARdvtGAAVLIITH-DLGVVSE 220
Cdd:PRK13538  150 LWILDEPFTAIDKQGVARLEALLAqhAEQ---GGMVILTTHqDLPVASD 195

PLN03232

ABC transporter C family member; Provisional

19-245

4.56e-07

ABC transporter C family member; Provisional

Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.44 E-value: 4.56e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   19 IEVPAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLPEYARVSGSIRlhgkellglsdhamsqirgrmiGTVFQDP 98
Cdd:PLN03232   628 TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR----------------------GSVAYVP 685

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   99 MSALTPVYTIGDQIAEAIEIHSREISRA-DARRRAVELLELVGIAQPERRARAFphELSGGERQRVVIAIAIANDPDLLI 177
Cdd:PLN03232   686 QVSWIFNATVRENILFGSDFESERYWRAiDVTALQHDLDLLPGRDLTEIGERGV--NISGGQKQRVSMARAVYSNSDIYI 763

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1424538268  178 CDEPTTALDVTVQAQILDVLrTARDVTGAAVLIITHDLGVVSEFaDRALVMYAGRPVEIAAVDELYRD 245
Cdd:PLN03232   764 FDDPLSALDAHVAHQVFDSC-MKDELKGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELSKS 829

ABC_ABC_ChvD

TIGR03719

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...

28-214

4.62e-07

Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 52.63 E-value: 4.62e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  28 SYHIDPGEVLAIVGESGCGKTTAALAVIGL-LPEyarvSGSIRLHGKELLGLSDhamsQIRgrmigtvfqdpmSALTPVY 106
Cdd:TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQeQPD----SGTIEIGETVKLAYVD----QSR------------DALDPNK 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 107 TIGDQIAEA---IEIHSREI-SRADARR---RAVELLELVGiaqperrarafphELSGGERQRVVIAIAIANDPDLLICD 179
Cdd:TIGR03719 402 TVWEEISGGldiIKLGKREIpSRAYVGRfnfKGSDQQKKVG-------------QLSGGERNRVHLAKTLKSGGNVLLLD 468

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1424538268 180 EPTTALDV-TVQAqildvLRTARDVTGAAVLIITHD 214
Cdd:TIGR03719 469 EPTNDLDVeTLRA-----LEEALLNFAGCAVVISHD 499

3a01205

TIGR00956

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]

31-234

5.69e-07

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]

Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.80 E-value: 5.69e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   31 IDPGEVLAIVGESGCGKTTAALAVIGLLPEYAR-VSGSIRLHGkelLGLSDhAMSQIRGRMIgtvfqdpMSALT----PV 105
Cdd:TIGR00956   84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIgVEGVITYDG---ITPEE-IKKHYRGDVV-------YNAETdvhfPH 152

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  106 YTIGDQIAEAIEIHSRE-----ISRADARRRAVEL-LELVG--IAQPERRARAFPHELSGGERQRVVIAIAIANDPDLLI 177
Cdd:TIGR00956  153 LTVGETLDFAARCKTPQnrpdgVSREEYAKHIADVyMATYGlsHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424538268  178 CDEPTTALDVTVQAQILDVLRTARDVTGAAVLII-------THDLgvvseFaDRALVMYAGRPV 234
Cdd:TIGR00956  233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAiyqcsqdAYEL-----F-DKVIVLYEGYQI 290

ABC_UvrA

cd03238

ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ...

155-228

6.02e-07

ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 50.01 E-value: 6.02e-07

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1424538268 155 LSGGERQRVVIA--IAIANDPDLLICDEPTTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVVSEfADRALVM 228
Cdd:cd03238    88 LSGGELQRVKLAseLFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLSS-ADWIIDF 161

sufC

PRK09580

cysteine desulfurase ATPase component; Reviewed

382-586

7.32e-07

cysteine desulfurase ATPase component; Reviewed

Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 50.95 E-value: 7.32e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTtLNQIL---ELTKPEAGSIEILGTDVavLDAAARRRLRTELQVVFQDPVASldprl 458
Cdd:PRK09580   19 GLNLEVRPGEVHAIMGPNGSGKST-LSATLagrEDYEVTGGTVEFKGKDL--LELSPEDRAGEGIFMAFQYPVEI----- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 459 pvydviaePLRANGFHRHECEERVAELLAVVGLDHSDASRYPAE-------------------FSGGQKQRIGIARALAL 519
Cdd:PRK09580   91 --------PGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEkiallkmpedlltrsvnvgFSGGEKKRNDILQMAVL 162

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424538268 520 QPKILALDEPVSALDV---SIQAGIVNLLLDLQRrfglSYLFVSHDLSVVKHLA-HRVAVMYRGMIVEQGE 586
Cdd:PRK09580  163 EPELCILDESDSGLDIdalKIVADGVNSLRDGKR----SFIIVTHYQRILDYIKpDYVHVLYQGRIVKSGD 229

3a01205

TIGR00956

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]

33-231

8.29e-07

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]

Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.42 E-value: 8.29e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   33 PGEVLAIVGESGCGKTTaalaVIGLLPEyaRVSGSIRLHGKELLGlsDHAMSQIRGRMIGTVFQ-DPMSALTPVytigdq 111
Cdd:TIGR00956  788 PGTLTALMGASGAGKTT----LLNVLAE--RVTTGVITGGDRLVN--GRPLDSSFQRSIGYVQQqDLHLPTSTV------ 853

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  112 iAEAIEIHSR-----EISRADARRRAVELLELVGIaqpERRARAF---PHE-LSGGERQRVVIAIAIANDPDLLI-CDEP 181
Cdd:TIGR00956  854 -RESLRFSAYlrqpkSVSKSEKMEYVEEVIKLLEM---ESYADAVvgvPGEgLNVEQRKRLTIGVELVAKPKLLLfLDEP 929

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1424538268  182 TTALDVTVQAQILDVLRTARDvTGAAVLIITHDLGVV--SEFaDRALVMYAG 231
Cdd:TIGR00956  930 TSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAIlfEEF-DRLLLLQKG 979

PLN03130

ABC transporter C family member; Provisional

383-593

1.01e-06

ABC transporter C family member; Provisional

Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 52.05 E-value: 1.01e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  383 ISFTLEQGRTLGIVGESGSGKSTTLNQIL-ELTKPEAGSIEILGTdVA-------VLDAAARRrlrtelQVVFQDPVasl 454
Cdd:PLN03130   636 INLDVPVGSLVAIVGSTGEGKTSLISAMLgELPPRSDASVVIRGT-VAyvpqvswIFNATVRD------NILFGSPF--- 705

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  455 dprlpvydviaEPLRANGFHRHECEERVAELLAvvGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALD 534
Cdd:PLN03130   706 -----------DPERYERAIDVTALQHDLDLLP--GGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1424538268  535 VSIQAGIVNLLLDLQRRfGLSYLFVSHDLSVVKHLaHRVAVMYRGMIVEQGESDQVFTN 593
Cdd:PLN03130   773 AHVGRQVFDKCIKDELR-GKTRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEELSNN 829

PRK15064

ABC transporter ATP-binding protein; Provisional

381-573

1.15e-06

ABC transporter ATP-binding protein; Provisional

Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.43 E-value: 1.15e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 381 DGISFTLEQGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEilGTDVAVLDAAArrrlrtelqvvfQDPVASLDPRLPV 460
Cdd:PRK15064  336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK--WSENANIGYYA------------QDHAYDFENDLTL 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 461 YDVIAEplrangfHRHEC--EERVAELLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDV-SI 537
Cdd:PRK15064  402 FDWMSQ-------WRQEGddEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMeSI 474

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1424538268 538 QAgiVNLLLDLqrrFGLSYLFVSHDLSVVKHLAHRV 573
Cdd:PRK15064  475 ES--LNMALEK---YEGTLIFVSHDREFVSSLATRI 505

PTZ00265

multidrug resistance protein (mdr1); Provisional

11-228

1.30e-06

multidrug resistance protein (mdr1); Provisional

Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 51.95 E-value: 1.30e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   11 NVTFETE---DIEVpaVRGTSYHIDPGEVLAIVGESGCGKTTAaLAVIGLLpeYARVSGSIRLHGKEllGLSDHAMSQIR 87
Cdd:PTZ00265   387 NVRFHYDtrkDVEI--YKDLNFTLTEGKTYAFVGESGCGKSTI-LKLIERL--YDPTEGDIIINDSH--NLKDINLKWWR 459

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   88 GRmIGTVFQDPM--------SALTPVYTIGDqiAEAIEIHSRE---ISRADARRR-------------------AVELL- 136
Cdd:PTZ00265   460 SK-IGVVSQDPLlfsnsiknNIKYSLYSLKD--LEALSNYYNEdgnDSQENKNKRnscrakcagdlndmsnttdSNELIe 536

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  137 -----------ELVGIAQP---ERRARAFP-----------HELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQA 191
Cdd:PTZ00265   537 mrknyqtikdsEVVDVSKKvliHDFVSALPdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616

                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 1424538268  192 QILDVLRTARDVTGAAVLIITHDLGVVsEFADRALVM 228
Cdd:PTZ00265   617 LVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVL 652

ABC_UvrA

cd03238

ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ...

382-567

1.39e-06

Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 48.86 E-value: 1.39e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 382 GISFTLEQGRTLGIVGESGSGKSTTLNQILEltkpeagsieilgtdvavldAAARRRLRTELQVVFQDPVASLDprlpvy 461
Cdd:cd03238    13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY--------------------ASGKARLISFLPKFSRNKLIFID------ 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268 462 dviaePLRAngfhrheceervaelLAVVGLDHSDASRYPAEFSGGQKQRIGIARALALQPK--ILALDEPVSALDVSIQA 539
Cdd:cd03238    67 -----QLQF---------------LIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDIN 126

                         170       180
                  ....*....|....*....|....*...
gi 1424538268 540 GIVNLLLDLqRRFGLSYLFVSHDLSVVK 567
Cdd:cd03238   127 QLLEVIKGL-IDLGNTVILIEHNLDVLS 153

PLN03232

ABC transporter C family member; Provisional

22-242

1.43e-06

ABC transporter C family member; Provisional

Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 51.52 E-value: 1.43e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLLpEYARvsGSIRLHGKEL--LGLSDhamsqIRgRMIGTVFQDPM 99
Cdd:PLN03232  1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEK--GRIMIDDCDVakFGLTD-----LR-RVLSIIPQSPV 1320

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  100 SALTPVYTIGDQIAEAIEIHSRE-ISRA---DARRRAVELLElvgiAQPERRARAFphelSGGERQRVVIAIAIANDPDL 175
Cdd:PLN03232  1321 LFSGTVRFNIDPFSEHNDADLWEaLERAhikDVIDRNPFGLD----AEVSEGGENF----SVGQRQLLSLARALLRRSKI 1392

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424538268  176 LICDEPTTALDVTVQAQILDVLRtaRDVTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDEL 242
Cdd:PLN03232  1393 LVLDEATASVDVRTDSLIQRTIR--EEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456

PTZ00265

multidrug resistance protein (mdr1); Provisional

5-227

1.52e-06

multidrug resistance protein (mdr1); Provisional

Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 51.57 E-value: 1.52e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268    5 LEVTDLNVTFETEDiEVPAVRGTSYHIDPGEVLAIVGESGCGKTTaalaVIGLLPEY----------------------- 61
Cdd:PTZ00265  1166 IEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKST----VMSLLMRFydlkndhhivfknehtndmtneq 1240

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   62 --------------------------ARVSGSIRLHGKELL---GLSDHAMSQIRGrMIGTVFQDPMSALTPVYtigdqi 112
Cdd:PTZ00265  1241 dyqgdeeqnvgmknvnefsltkeggsGEDSTVFKNSGKILLdgvDICDYNLKDLRN-LFSIVSQEPMLFNMSIY------ 1313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  113 aEAIEIHSREISRADARRRAV-----ELLELVGiAQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDV 187
Cdd:PTZ00265  1314 -ENIKFGKEDATREDVKRACKfaaidEFIESLP-NKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|
gi 1424538268  188 TVQAQILDVLRTARDVTGAAVLIITHDLGVVSEfADRALV 227
Cdd:PTZ00265  1392 NSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVV 1430

PLN03130

ABC transporter C family member; Provisional

22-242

1.62e-06

ABC transporter C family member; Provisional

Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 51.66 E-value: 1.62e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   22 PAVRGTSYHIDPGEVLAIVGESGCGKTTAALAVIGLL-PEyarvSGSIRLHGKEL--LGLSDhamsqIRgRMIGTVFQDP 98
Cdd:PLN03130  1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVeLE----RGRILIDGCDIskFGLMD-----LR-KVLGIIPQAP 1322

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268   99 M-------SALTPVYTIGD-QIAEAIE-IHSREISRADARRRAVELLELvgiaqperrarafPHELSGGERQRVVIAIAI 169
Cdd:PLN03130  1323 VlfsgtvrFNLDPFNEHNDaDLWESLErAHLKDVIRRNSLGLDAEVSEA-------------GENFSVGQRQLLSLARAL 1389

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424538268  170 ANDPDLLICDEPTTALDVTVQAQILDVLRtaRDVTGAAVLIITHDLGVVSEfADRALVMYAGRPVEIAAVDEL 242
Cdd:PLN03130  1390 LRRSKILVLDEATAAVDVRTDALIQKTIR--EEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL 1459

AAA

smart00382

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...

389-570

1.68e-06

Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.14 E-value: 1.68e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  389 QGRTLGIVGESGSGKSTTLNQILELTKPEAGSIEILGTDVAVLDAAARRRLRTELqvvfqdpvasldprlpvydviaepl 468
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVG------------------------- 55

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424538268  469 rangfhrheceervaellavvgldhsdasRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGI-----VN 543
Cdd:smart00382  56 -----------------------------GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLllleeLR 106

                          170       180
                   ....*....|....*....|....*..
gi 1424538268  544 LLLDLQRRFGLSYLFVSHDLSVVKHLA 570
Cdd:smart00382 107 LLLLLKSEKNLTVILTTNDEKDLGPAL 133

rim_protein