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Conserved domains on  [gi|1398415900|ref|WP_110326278|]
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GMC family oxidoreductase [Paraburkholderia tropica]

Protein Classification

GMC family oxidoreductase( domain architecture ID 11455227)

GMC (glucose-methanol-choline) family oxidoreductase is a flavoprotein that catalyzes the oxidation of an alcohol moiety to the corresponding aldehyde with the concomitant reduction of flavin adenine dinucleotide (FAD)

EC:  1.-.-.-
Gene Ontology:  GO:0016491|GO:0050660
PubMed:  23578136|1542121
SCOP:  3000055

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 4-543 0e+00

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


:

Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 605.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   4 ATTHYDFIVIGAGAAGCLTAGRLVRDHGARVLLVEAGAPDRNPLIHMPAGFVKLLSNHDYMTFHRSAKHPHLNDRQPSIP 83
Cdd:COG2303     1 MLEEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGRDDDPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  84 QGKVLGGGSSVNAMVYIRGQARDYDDWvSLTGDESWRYQALLPHFIRLEGNSTFNNAAHGVNGPLKVSDGANLSDVSRAF 163
Cdd:COG2303    81 RGKVLGGSSSINGMIYVRGQPEDFDLW-AQLGNQGWGYDDVLPYFKRAEDNERGADAYHGRSGPLPVSDPPLPNPLSDAF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 164 VLAAQQNGLPYNPDFNSGTQRGTGFYQTTTFQGRRCSGVDAFLAPVMNDARLTIRTGAQVTRILIEQNVAKGIE-IQSGT 242
Cdd:COG2303   160 IEAAEELGIPRADDFNGGACEGCGFCQVTCRNGARWSAARAYLPPALKRPNLTVRTGALVTRILFDGGRATGVEyRDDGE 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 243 QREQLFADQIVLTAGALVTPKLLMLSGIGPANALARLNIPVIADLPGVGENLQDHHEVPVVAFCNGRQGYFGQdrgWNQI 322
Cdd:COG2303   240 EHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPGVGRNLQDHLEVSVVFRFKEPVTLNKS---LRKA 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 323 RNGLQYLAFRSGPVASNAVEAGAFFNPDDTSGAPSIQMFCLPTVYLDPDVTS-TKAAYGFTLNSCVMRPKSRGRVTLQTS 401
Cdd:COG2303   317 RIGLQYLLTRSGPLTSNVAEAGGFFRSDPGLERPDLQFHFLPLGLTPRWGKKaLHDGHGFTAHVEQLRPESRGRVTLDSA 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 402 DPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREGPLAAMVDRIVLPDEQAVThacaasdAALAEHCRRTVKTVYHPAG 481
Cdd:COG2303   397 DPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGEEILPGPDVQS-------DEELAFIRARAYTIYHPVG 469

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1398415900 482 TARMGadNDPMAVLSNDMTVRGIAGLRVFDTSSWPTIISGNTVATTYAVADRGVALMMGETL 543
Cdd:COG2303   470 TCRMG--TDPDSVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKAADMILGDYL 529
 
Name Accession Description Interval E-value
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 4-543 0e+00

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 605.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   4 ATTHYDFIVIGAGAAGCLTAGRLVRDHGARVLLVEAGAPDRNPLIHMPAGFVKLLSNHDYMTFHRSAKHPHLNDRQPSIP 83
Cdd:COG2303     1 MLEEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGRDDDPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  84 QGKVLGGGSSVNAMVYIRGQARDYDDWvSLTGDESWRYQALLPHFIRLEGNSTFNNAAHGVNGPLKVSDGANLSDVSRAF 163
Cdd:COG2303    81 RGKVLGGSSSINGMIYVRGQPEDFDLW-AQLGNQGWGYDDVLPYFKRAEDNERGADAYHGRSGPLPVSDPPLPNPLSDAF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 164 VLAAQQNGLPYNPDFNSGTQRGTGFYQTTTFQGRRCSGVDAFLAPVMNDARLTIRTGAQVTRILIEQNVAKGIE-IQSGT 242
Cdd:COG2303   160 IEAAEELGIPRADDFNGGACEGCGFCQVTCRNGARWSAARAYLPPALKRPNLTVRTGALVTRILFDGGRATGVEyRDDGE 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 243 QREQLFADQIVLTAGALVTPKLLMLSGIGPANALARLNIPVIADLPGVGENLQDHHEVPVVAFCNGRQGYFGQdrgWNQI 322
Cdd:COG2303   240 EHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPGVGRNLQDHLEVSVVFRFKEPVTLNKS---LRKA 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 323 RNGLQYLAFRSGPVASNAVEAGAFFNPDDTSGAPSIQMFCLPTVYLDPDVTS-TKAAYGFTLNSCVMRPKSRGRVTLQTS 401
Cdd:COG2303   317 RIGLQYLLTRSGPLTSNVAEAGGFFRSDPGLERPDLQFHFLPLGLTPRWGKKaLHDGHGFTAHVEQLRPESRGRVTLDSA 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 402 DPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREGPLAAMVDRIVLPDEQAVThacaasdAALAEHCRRTVKTVYHPAG 481
Cdd:COG2303   397 DPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGEEILPGPDVQS-------DEELAFIRARAYTIYHPVG 469

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1398415900 482 TARMGadNDPMAVLSNDMTVRGIAGLRVFDTSSWPTIISGNTVATTYAVADRGVALMMGETL 543
Cdd:COG2303   470 TCRMG--TDPDSVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKAADMILGDYL 529
PRK02106 PRK02106
choline dehydrogenase; Validated
 3-542 1.47e-156

choline dehydrogenase; Validated


Pssm-ID: 235000 [Multi-domain]  Cd Length: 560  Bit Score: 459.30  E-value: 1.47e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   3 KATTHYDFIVIGAGAAGCLTAGRLVRDHGARVLLVEAGAPD--RNPLIHMPAGFVKLLSNHDYMTFHRSAKHPHLNDRQP 80
Cdd:PRK02106    1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDyrWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  81 SIPQGKVLGGGSSVNAMVYIRGQARDYDDWVSLTGDESWRYQALLPHFIRLEGNSTFNNAAHGVNGPLKVSDGANLSD-V 159
Cdd:PRK02106   81 ECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNpL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 160 SRAFVLAAQQNGLPYNPDFNSGTQRGTGFYQTTTFQGRRCSGVDAFLAPVMNDARLTIRTGAQVTRILIEQNVAKGIEIQ 239
Cdd:PRK02106  161 FQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 240 SGTQREQLFAD-QIVLTAGALVTPKLLMLSGIGPANALARLNIPVIADLPGVGENLQDHHEV--------PVVAfcngrQ 310
Cdd:PRK02106  241 RGGGRETARARrEVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVyiqyeckqPVSL-----Y 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 311 GYFGqdrGWNQIRNGLQYLAFRSGPVASNAVEAGAFFNPDDTSGAPSIQMFCLPtVYLDPDVTSTKAAYGFTLNSCVMRP 390
Cdd:PRK02106  316 PALK---WWNKPKIGAEWLFTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLP-VAIRYDGSNAVKGHGFQAHVGPMRS 391

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 391 KSRGRVTLQTSDPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREGPLAAMVDRIVLP------DEQavthacaasdaa 464
Cdd:PRK02106  392 PSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPgadvqtDEE------------ 459

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1398415900 465 LAEHCRRTVKTVYHPAGTARMGAdnDPMAVLSNDMTVRGIAGLRVFDTSSWPTIISGNTVATTYAVADRGVALMMGET 542
Cdd:PRK02106  460 IDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535
Rv0697 TIGR03970
dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the ...
 9-533 8.82e-74

dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.


Pssm-ID: 274888 [Multi-domain]  Cd Length: 487  Bit Score: 243.18  E-value: 8.82e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   9 DFIVIGAGAAGCLTAGRLVRDHGARVLLVEAGAPDRNPL---------IHMPAGFVKLLSNHDYMTFHRSAKhphlndRQ 79
Cdd:TIGR03970   2 DVLIVGAGSAGSVLAARLSEDPSCTVTVLEAGPGYRDPSrlpaqltdgLRLPIGPASPVVWRYGVELTDGPR------RA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  80 PSIPQGKVLGGGSSVNAMVYIRGQARDYDDWvsltGDESWRYQALLPHFIRLEGNSTFNNAAHGVNGPLKVSDGANLSDV 159
Cdd:TIGR03970  76 SQIVRGRVLGGSGAVNGGYFCRALPADFDAW----PIPGWSWDDVLPHFRAIETDLDFDGPLHGTAGPIPVRRTAELDGI 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 160 SRAFVLAAQQNGLPYNPDFNS---GTQRGTGFYQTTTFQGRRCSGVDAFLAPVMNDARLTIRTGAQVTRILIEQNVAKGI 236
Cdd:TIGR03970 152 SAAFVAAALGAGFGWIADLNGsgpGLPGGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFSGTRAVGV 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 237 EIQSGTQREQLFADQIVLTAGALVTPKLLMLSGIGPANALARLNIPVIADLPgVGENLQDHHEVpvvafcngrqgyfgqd 316
Cdd:TIGR03970 232 EVLGDGGPRTLRADRVVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLP-VGSDFVDHPEW---------------- 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 317 rgwnqirnGLQYLAFRSGPVASNAVEAGAFFNPDDTsgapSIQMFCLPTVYLDPDVTSTKAAYGFTLnscvMRPKSRGRV 396
Cdd:TIGR03970 295 --------VLPYRWRPTHDRPPTSPVLETVLNTADI----EIRPYTAGFTALVPGSPRDDPHLGVAL----MRPHSRGRI 358

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 397 TLQTSDPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREGPLAAMVDRIVlpdeqavthacaasDAALAEHCRRTVKTV 476
Cdd:TIGR03970 359 RLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGSPELGPLLEPAV--------------REGEASWVLARLATS 424

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1398415900 477 YHPAGTARMGADNDPMAVLSNDMTVRGIAGLRVFDTSSWPTIISGNTVATTYAVADR 533
Cdd:TIGR03970 425 QHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVAER 481
GMC_oxred_N pfam00732
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
 82-297 1.02e-37

GMC oxidoreductase; This family of proteins bind FAD as a cofactor.


Pssm-ID: 366272 [Multi-domain]  Cd Length: 218  Bit Score: 138.57  E-value: 1.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  82 IPQGKVLGGGSSVNAMVYIRGQARDYDDWVSLTGDESWRYQALLPHFIRLEgnstfnnaahgvnGPLKVSDGAN-LSDVS 160
Cdd:pfam00732  21 LPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE-------------GPLGVTTKGIeESPLN 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 161 RAFVLAAQQNGLPYNP---DFNSGTQRGTGFYQTTTfqGRRCSGVDAFLAPVMNdARLTIRTGAQVTRILIEQN--VAKG 235
Cdd:pfam00732  88 QALLKAAEELGYPVEAvprNSNGCHYCGFCGLGCPT--GAKQSTARTWLRPALE-RNLRILTGAKAEKIIILGRggRAVG 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1398415900 236 IEIQS---GTQREQLFADQIVLTAGALVTPKLLMLSGIGPANAlarlnipviadlpGVGENLQDH 297
Cdd:pfam00732 165 VEARDgggGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH-------------PVGKNLQLH 216
 
Name Accession Description Interval E-value
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 4-543 0e+00

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 605.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   4 ATTHYDFIVIGAGAAGCLTAGRLVRDHGARVLLVEAGAPDRNPLIHMPAGFVKLLSNHDYMTFHRSAKHPHLNDRQPSIP 83
Cdd:COG2303     1 MLEEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGRDDDPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  84 QGKVLGGGSSVNAMVYIRGQARDYDDWvSLTGDESWRYQALLPHFIRLEGNSTFNNAAHGVNGPLKVSDGANLSDVSRAF 163
Cdd:COG2303    81 RGKVLGGSSSINGMIYVRGQPEDFDLW-AQLGNQGWGYDDVLPYFKRAEDNERGADAYHGRSGPLPVSDPPLPNPLSDAF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 164 VLAAQQNGLPYNPDFNSGTQRGTGFYQTTTFQGRRCSGVDAFLAPVMNDARLTIRTGAQVTRILIEQNVAKGIE-IQSGT 242
Cdd:COG2303   160 IEAAEELGIPRADDFNGGACEGCGFCQVTCRNGARWSAARAYLPPALKRPNLTVRTGALVTRILFDGGRATGVEyRDDGE 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 243 QREQLFADQIVLTAGALVTPKLLMLSGIGPANALARLNIPVIADLPGVGENLQDHHEVPVVAFCNGRQGYFGQdrgWNQI 322
Cdd:COG2303   240 EHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPGVGRNLQDHLEVSVVFRFKEPVTLNKS---LRKA 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 323 RNGLQYLAFRSGPVASNAVEAGAFFNPDDTSGAPSIQMFCLPTVYLDPDVTS-TKAAYGFTLNSCVMRPKSRGRVTLQTS 401
Cdd:COG2303   317 RIGLQYLLTRSGPLTSNVAEAGGFFRSDPGLERPDLQFHFLPLGLTPRWGKKaLHDGHGFTAHVEQLRPESRGRVTLDSA 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 402 DPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREGPLAAMVDRIVLPDEQAVThacaasdAALAEHCRRTVKTVYHPAG 481
Cdd:COG2303   397 DPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGEEILPGPDVQS-------DEELAFIRARAYTIYHPVG 469

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1398415900 482 TARMGadNDPMAVLSNDMTVRGIAGLRVFDTSSWPTIISGNTVATTYAVADRGVALMMGETL 543
Cdd:COG2303   470 TCRMG--TDPDSVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKAADMILGDYL 529
PRK02106 PRK02106
choline dehydrogenase; Validated
 3-542 1.47e-156

choline dehydrogenase; Validated


Pssm-ID: 235000 [Multi-domain]  Cd Length: 560  Bit Score: 459.30  E-value: 1.47e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   3 KATTHYDFIVIGAGAAGCLTAGRLVRDHGARVLLVEAGAPD--RNPLIHMPAGFVKLLSNHDYMTFHRSAKHPHLNDRQP 80
Cdd:PRK02106    1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDyrWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  81 SIPQGKVLGGGSSVNAMVYIRGQARDYDDWVSLTGDESWRYQALLPHFIRLEGNSTFNNAAHGVNGPLKVSDGANLSD-V 159
Cdd:PRK02106   81 ECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNpL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 160 SRAFVLAAQQNGLPYNPDFNSGTQRGTGFYQTTTFQGRRCSGVDAFLAPVMNDARLTIRTGAQVTRILIEQNVAKGIEIQ 239
Cdd:PRK02106  161 FQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 240 SGTQREQLFAD-QIVLTAGALVTPKLLMLSGIGPANALARLNIPVIADLPGVGENLQDHHEV--------PVVAfcngrQ 310
Cdd:PRK02106  241 RGGGRETARARrEVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVyiqyeckqPVSL-----Y 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 311 GYFGqdrGWNQIRNGLQYLAFRSGPVASNAVEAGAFFNPDDTSGAPSIQMFCLPtVYLDPDVTSTKAAYGFTLNSCVMRP 390
Cdd:PRK02106  316 PALK---WWNKPKIGAEWLFTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLP-VAIRYDGSNAVKGHGFQAHVGPMRS 391

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 391 KSRGRVTLQTSDPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREGPLAAMVDRIVLP------DEQavthacaasdaa 464
Cdd:PRK02106  392 PSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPgadvqtDEE------------ 459

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1398415900 465 LAEHCRRTVKTVYHPAGTARMGAdnDPMAVLSNDMTVRGIAGLRVFDTSSWPTIISGNTVATTYAVADRGVALMMGET 542
Cdd:PRK02106  460 IDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535
Rv0697 TIGR03970
dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the ...
 9-533 8.82e-74

dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.


Pssm-ID: 274888 [Multi-domain]  Cd Length: 487  Bit Score: 243.18  E-value: 8.82e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   9 DFIVIGAGAAGCLTAGRLVRDHGARVLLVEAGAPDRNPL---------IHMPAGFVKLLSNHDYMTFHRSAKhphlndRQ 79
Cdd:TIGR03970   2 DVLIVGAGSAGSVLAARLSEDPSCTVTVLEAGPGYRDPSrlpaqltdgLRLPIGPASPVVWRYGVELTDGPR------RA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  80 PSIPQGKVLGGGSSVNAMVYIRGQARDYDDWvsltGDESWRYQALLPHFIRLEGNSTFNNAAHGVNGPLKVSDGANLSDV 159
Cdd:TIGR03970  76 SQIVRGRVLGGSGAVNGGYFCRALPADFDAW----PIPGWSWDDVLPHFRAIETDLDFDGPLHGTAGPIPVRRTAELDGI 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 160 SRAFVLAAQQNGLPYNPDFNS---GTQRGTGFYQTTTFQGRRCSGVDAFLAPVMNDARLTIRTGAQVTRILIEQNVAKGI 236
Cdd:TIGR03970 152 SAAFVAAALGAGFGWIADLNGsgpGLPGGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFSGTRAVGV 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 237 EIQSGTQREQLFADQIVLTAGALVTPKLLMLSGIGPANALARLNIPVIADLPgVGENLQDHHEVpvvafcngrqgyfgqd 316
Cdd:TIGR03970 232 EVLGDGGPRTLRADRVVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLP-VGSDFVDHPEW---------------- 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 317 rgwnqirnGLQYLAFRSGPVASNAVEAGAFFNPDDTsgapSIQMFCLPTVYLDPDVTSTKAAYGFTLnscvMRPKSRGRV 396
Cdd:TIGR03970 295 --------VLPYRWRPTHDRPPTSPVLETVLNTADI----EIRPYTAGFTALVPGSPRDDPHLGVAL----MRPHSRGRI 358

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 397 TLQTSDPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREGPLAAMVDRIVlpdeqavthacaasDAALAEHCRRTVKTV 476
Cdd:TIGR03970 359 RLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGSPELGPLLEPAV--------------REGEASWVLARLATS 424

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1398415900 477 YHPAGTARMGADNDPMAVLSNDMTVRGIAGLRVFDTSSWPTIISGNTVATTYAVADR 533
Cdd:TIGR03970 425 QHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVAER 481
GMC_oxred_N pfam00732
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
 82-297 1.02e-37

GMC oxidoreductase; This family of proteins bind FAD as a cofactor.


Pssm-ID: 366272 [Multi-domain]  Cd Length: 218  Bit Score: 138.57  E-value: 1.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  82 IPQGKVLGGGSSVNAMVYIRGQARDYDDWVSLTGDESWRYQALLPHFIRLEgnstfnnaahgvnGPLKVSDGAN-LSDVS 160
Cdd:pfam00732  21 LPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE-------------GPLGVTTKGIeESPLN 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 161 RAFVLAAQQNGLPYNP---DFNSGTQRGTGFYQTTTfqGRRCSGVDAFLAPVMNdARLTIRTGAQVTRILIEQN--VAKG 235
Cdd:pfam00732  88 QALLKAAEELGYPVEAvprNSNGCHYCGFCGLGCPT--GAKQSTARTWLRPALE-RNLRILTGAKAEKIIILGRggRAVG 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1398415900 236 IEIQS---GTQREQLFADQIVLTAGALVTPKLLMLSGIGPANAlarlnipviadlpGVGENLQDH 297
Cdd:pfam00732 165 VEARDgggGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH-------------PVGKNLQLH 216
GMC_oxred_C pfam05199
GMC oxidoreductase; This domain found associated with pfam00732.
 390-533 1.04e-34

GMC oxidoreductase; This domain found associated with pfam00732.


Pssm-ID: 398739 [Multi-domain]  Cd Length: 143  Bit Score: 127.90  E-value: 1.04e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 390 PKSRGRVTLQTSDPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREGPLAAMVDRIVLPDEQaVTHACAASDAALAEHC 469
Cdd:pfam05199   1 PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPVPE-VSDAAVTSDDELLAYI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1398415900 470 RRTVKTVYHPAGTARMGADNDPmAVLSNDMTVRGIAGLRVFDTSSWPTIISGNTVATTYAVADR 533
Cdd:pfam05199  80 RAAASTSYHPMGTCRMGADPDD-AVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAER 142
PLN02785 PLN02785
Protein HOTHEAD
 8-540 3.48e-22

Protein HOTHEAD


Pssm-ID: 215420 [Multi-domain]  Cd Length: 587  Bit Score: 100.26  E-value: 3.48e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   8 YDFIVIGAGAAGCLTAGRLVRDHgaRVLLVE-AGAP--DRNplihmpagfVKLLSNhdymtFHRSakhphLNDRQPSIP- 83
Cdd:PLN02785   56 YDYIVVGGGTAGCPLAATLSQNF--SVLLLErGGVPfgNAN---------VSFLEN-----FHIG-----LADTSPTSAs 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  84 ------------QGKVLGGGSSVNAMVYIRGQARDYDD--WVSLTGDESWRY-QALLPHFIRLegnstfnnaahgvnGPL 148
Cdd:PLN02785  115 qafistdgvinaRARVLGGGTCINAGFYSRASTRFIQKagWDAKLVNESYPWvERQIVHWPKV--------------APW 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 149 KVSDGANLSDVSrafvlAAQQNGLPYnpDFNSGTQ-RGTGFYQTttfqGRRCSGVDafLAPVMNDARLTIRTGAQVTRIL 227
Cdd:PLN02785  181 QAALRDSLLEVG-----VSPFNGFTY--DHVYGTKvGGTIFDEF----GRRHTAAE--LLAAGNPNKLRVLLHATVQKIV 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 228 --IEQNVAKGIEIQ----SGTQREQLFAD----QIVLTAGALVTPKLLMLSGIGPANALARLNIPVIADLPGVGENLQDh 297
Cdd:PLN02785  248 fdTSGKRPRATGVIfkdeNGNQHQAFLSNnkgsEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMAD- 326

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 298 hevpvvafcNGRQGYFGQDRgwNQIRNGL-QYLAFRSGPVasnAVEAGAFFNPDDTS-----GAPSIQMFCLPTV----- 366
Cdd:PLN02785  327 ---------NPMNSIFVPSK--APVEQSLiQTVGITKMGV---YIEASSGFGQSPDSihchhGIMSAEIGQLSTIppkqr 392

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 367 -------YLDPDVTSTKAAY--GFTLNScVMRPKSRGRVTLQTSDPSATPIVYPNYLEHPDDLRLSIAGLRRAAQIMREG 437
Cdd:PLN02785  393 tpeaiqaYIHRKKNLPHEAFngGFILEK-IAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTN 471

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 438 PLAAMVDRIVLPDEQAVTHACAASDAALAEH----------CRRTVKTVYHPAGTARMGadndpmAVLSNDMTVRGIAGL 507
Cdd:PLN02785  472 HFTNFTQCDKQTMEKVLNMSVKANINLIPKHtndtksleqfCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRL 545

                         570       580       590
                  ....*....|....*....|....*....|...
gi 1398415900 508 RVFDTSSWPTIISGNTVATTyavadrgvaLMMG 540
Cdd:PLN02785  546 RVIDGSTFDESPGTNPQATV---------MMMG 569
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
6-42 2.27e-05

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 46.82  E-value: 2.27e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1398415900   6 THYDFIVIGAGAAGCLTAGRLVRdHGARVLLVEAGAP 42
Cdd:COG0665     1 ATADVVVIGGGIAGLSTAYHLAR-RGLDVTVLERGRP 36
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 5-40 5.80e-05

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 45.85  E-value: 5.80e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1398415900   5 TTHYDFIVIGAGAAGcLTAGRLVRDHGARVLLVEAG 40
Cdd:COG1249     1 MKDYDLVVIGAGPGG-YVAAIRAAQLGLKVALVEKG 35
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 5-280 6.01e-05

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 45.61  E-value: 6.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900   5 TTHYDFIVIGAGAAGcLTAGRLVRDHGARVLLVEAGA-P--------------DRNPLIHMPAG----FVKLLSNHDYMT 65
Cdd:COG1233     1 MMMYDVVVIGAGIGG-LAAAALLARAGYRVTVLEKNDtPggrartferpgfrfDVGPSVLTMPGvlerLFRELGLEDYLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900  66 FHR---SAKHPHlndrqpsiPQGKVLGGGSSVNAMV-----YIRGQARDYDDWVSLTGDeswRYQALLPHFIRLEGNSTF 137
Cdd:COG1233    80 LVPldpAYRVPF--------PDGRALDLPRDLERTAaelerLFPGDAEAYRRFLAELRR---LYDALLEDLLYRPLLSLR 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 138 NNAAHGVNGPLKVSDGANLSDVSRAF--------VLAAQqnglpynPDFNSGTQRGTGFYQTTTFQGRRCSGV------- 202
Cdd:COG1233   149 DLLRPLALARLLRLLLRSLRDLLRRYfkdprlraLLAGQ-------ALYLGLSPDRTPALYALIAYLEYAGGVwypkggm 221

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1398415900 203 ----DAfLAPVMNDARLTIRTGAQVTRILIEQNVAKGIEIQSGtqrEQLFADQIVLTAGALVTPKLLMLSGIGPANALAR 278
Cdd:COG1233   222 galaDA-LARLAEELGGEIRTGAEVERILVEGGRATGVRLADG---EEIRADAVVSNADPAHTYLRLLGEEALPARYRRR 297


                  ..
gi 1398415900 279 LN 280
Cdd:COG1233   298 LE 299
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 5-42 1.27e-04

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 44.78  E-value: 1.27e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1398415900   5 TTHYDFIVIGAGAAGcLTAGRLVRDHGARVLLVEAGAP 42
Cdd:PRK06292    1 MEKYDVIVIGAGPAG-YVAARRAAKLGKKVALIEKGPL 37
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
1-39 1.71e-04

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 44.14  E-value: 1.71e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1398415900   1 MAKATTHYDFIVIGAGAAGcLTAGRLVRDHGARVLLVEA 39
Cdd:COG1231     1 MSRRARGKDVVIVGAGLAG-LAAARELRKAGLDVTVLEA 38
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 8-38 5.11e-04

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 42.31  E-value: 5.11e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1398415900   8 YDFIVIGAGAAGClTAGRLVRDHGARVLLVE 38
Cdd:TIGR02032   1 YDVVVVGAGPAGA-SAAYRLADKGLRVLLLE 30
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
4-41 7.56e-04

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 42.06  E-value: 7.56e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1398415900   4 ATTHYDFIVIGAGAAGCLTAGRLVRDHGARVLLVEAGA 41
Cdd:COG0579     1 MMEMYDVVIIGAGIVGLALARELSRYEDLKVLVLEKED 38
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 5-42 1.91e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 40.97  E-value: 1.91e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1398415900   5 TTHYDFIVIGAGAAGcLTAGRLVRDHGARVLLVEAGAP 42
Cdd:COG1053     1 DHEYDVVVVGSGGAG-LRAALEAAEAGLKVLVLEKVPP 37
HI0933_like pfam03486
HI0933-like protein;
8-40 1.93e-03

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 40.64  E-value: 1.93e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1398415900   8 YDFIVIGAGAAGCLTAGRLvRDHGARVLLVEAG 40
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISA-AKRGRRVLLIEKG 32
PRK06370 PRK06370
FAD-containing oxidoreductase;
5-38 2.21e-03

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 40.57  E-value: 2.21e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1398415900   5 TTHYDFIVIGAGAAGCLTAGRLVRdHGARVLLVE 38
Cdd:PRK06370    3 AQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIE 35
PRK06116 PRK06116
glutathione reductase; Validated
 5-39 2.64e-03

glutathione reductase; Validated


Pssm-ID: 235701 [Multi-domain]  Cd Length: 450  Bit Score: 40.52  E-value: 2.64e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1398415900   5 TTHYDFIVIGAGAAGcLTAGRLVRDHGARVLLVEA 39
Cdd:PRK06116    2 TKDYDLIVIGGGSGG-IASANRAAMYGAKVALIEA 35
MnmG COG0445
tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal ...
 1-37 3.47e-03

tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal structure and biogenesis]; tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440214 [Multi-domain]  Cd Length: 626  Bit Score: 40.37  E-value: 3.47e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1398415900   1 MAKATtHYDFIVIGAGAAGC---LTAGRLvrdhGARVLLV 37
Cdd:COG0445     1 MYYPK-EYDVIVVGGGHAGCeaaLAAARM----GAKTLLL 35
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
11-40 3.78e-03

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 39.65  E-value: 3.78e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1398415900  11 IVIGAGAAGCLTAGRLVRdHGARVLLVEAG 40
Cdd:COG2081     1 IVIGAGAAGLMAAITAAE-RGARVLLLEKN 29
PLN02576 PLN02576
protoporphyrinogen oxidase
 8-39 6.57e-03

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 39.23  E-value: 6.57e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1398415900   8 YDFIVIGAGAAGCLTAGRLVRDHGARVLLVEA 39
Cdd:PLN02576   13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEA 44
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
12-41 6.93e-03

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 35.20  E-value: 6.93e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1398415900  12 VIGAGAAGcLTAGRLVRDHGARVLLVEAGA 41
Cdd:pfam13450   1 IVGAGLAG-LVAAALLAKRGFRVLVLEKRD 29
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 4-41 8.72e-03

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 38.69  E-value: 8.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1398415900   4 ATTHYDFIVIGAGAAGCLTAGRLvRDHGARVLLVEAGA 41
Cdd:COG2072     3 ATEHVDVVVIGAGQAGLAAAYHL-RRAGIDFVVLEKAD 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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