|
Name |
Accession |
Description |
Interval |
E-value |
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
2-286 |
6.90e-171 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 473.79 E-value: 6.90e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 2 KKTRKLFQNIVITGVVGWLMVFVFLPNIMIIATSFLTRDDANLVEMVFTLDNYYRLFDPMYAEVLLHSINMAVVATLACL 81
Cdd:PRK09497 1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 82 LLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIIDKPLRIIYTPEAVVLGLVYI 161
Cdd:PRK09497 81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 162 LLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGAKNLLIGNVI 241
Cdd:PRK09497 161 LLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVI 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1391268036 242 KSQFLNIRDWPFGAATSICLTLVMGLMLFVYYRAVKLLHKKVEIE 286
Cdd:PRK09497 241 KSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVELE 285
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
5-282 |
1.45e-106 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 310.93 E-value: 1.45e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 5 RKLFQNIVITGVVGWLMVFVFLPNIMIIATSFLTRDDANLVEMVFTLDNYYRLF-DPMYAEVLLHSINMAVVATLACLLL 83
Cdd:COG1176 7 RRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 84 GYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIIDKPLRIIYTPEAVVLGLVYILL 163
Cdd:COG1176 87 GYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 164 PFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGAKNLLIGNVIKS 243
Cdd:COG1176 167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQ 246
|
250 260 270
....*....|....*....|....*....|....*....
gi 1391268036 244 QFLNIRDWPFGAATSICLTLVMGLMLFVYYRAVKLLHKK 282
Cdd:COG1176 247 QFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
57-271 |
4.27e-15 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 72.43 E-value: 4.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 57 LFDPMYAEVLLHSINMAVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLL 136
Cdd:TIGR01581 14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 137 WIGIidkplRIIYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVM 216
Cdd:TIGR01581 94 AAGI-----QVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAW 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1391268036 217 LPAMGLFFVADLMGGAKNLLIGNVIKSQFLNIRDWPFGAAT--SICLTLVMGLMLFV 271
Cdd:TIGR01581 169 ARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVasALLLLVIAFLLLLV 225
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
66-265 |
1.14e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 64.99 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 66 LLHSINMAVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIgiidkpl 145
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 146 riiytpEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFV 225
Cdd:cd06261 74 ------LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1391268036 226 ADLMGG--AKNLLIGNVIKSQFLNIRDWPFGAATSICLTLVM 265
Cdd:cd06261 148 VSFLGGgeAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
147-283 |
2.98e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 49.60 E-value: 2.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 147 IIYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVA 226
Cdd:pfam00528 48 LGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLL 127
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1391268036 227 DLMGGAKNLligNVIKSQFLNIRDWPFGAATSICLTLVMGLMLFVYYRAVKLLHKKV 283
Cdd:pfam00528 128 EFLGSWPGL---GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
2-286 |
6.90e-171 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 473.79 E-value: 6.90e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 2 KKTRKLFQNIVITGVVGWLMVFVFLPNIMIIATSFLTRDDANLVEMVFTLDNYYRLFDPMYAEVLLHSINMAVVATLACL 81
Cdd:PRK09497 1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 82 LLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIIDKPLRIIYTPEAVVLGLVYI 161
Cdd:PRK09497 81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 162 LLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGAKNLLIGNVI 241
Cdd:PRK09497 161 LLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVI 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1391268036 242 KSQFLNIRDWPFGAATSICLTLVMGLMLFVYYRAVKLLHKKVEIE 286
Cdd:PRK09497 241 KSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVELE 285
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
5-282 |
1.45e-106 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 310.93 E-value: 1.45e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 5 RKLFQNIVITGVVGWLMVFVFLPNIMIIATSFLTRDDANLVEMVFTLDNYYRLF-DPMYAEVLLHSINMAVVATLACLLL 83
Cdd:COG1176 7 RRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 84 GYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIIDKPLRIIYTPEAVVLGLVYILL 163
Cdd:COG1176 87 GYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 164 PFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGAKNLLIGNVIKS 243
Cdd:COG1176 167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQ 246
|
250 260 270
....*....|....*....|....*....|....*....
gi 1391268036 244 QFLNIRDWPFGAATSICLTLVMGLMLFVYYRAVKLLHKK 282
Cdd:COG1176 247 QFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
1-265 |
2.17e-61 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 196.85 E-value: 2.17e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 1 MKKTRKLfqniVITGVVGWLMVFVFLPNIMIIATSFLTRDDA-----NLVE-------MVFTLDNYYRLF-DPMYAEVLL 67
Cdd:PRK10683 25 MKHGRKL----VIALPYLWLILLFLLPFLIVFKISLAEMARAippytDLMEwadgqlsITLNLGNFLQLTdDPLYFDAYL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 68 HSINMAVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIIDKPLRI 147
Cdd:PRK10683 101 QSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTI 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 148 IYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVAD 227
Cdd:PRK10683 181 LHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPE 260
|
250 260 270
....*....|....*....|....*....|....*...
gi 1391268036 228 LMGGAKNLLIGNVIKSQFLNIRDWPFGAATSICLTLVM 265
Cdd:PRK10683 261 LLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLL 298
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
1-277 |
9.54e-31 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 120.27 E-value: 9.54e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 1 MKKTRKLFQNIVITGVVGWLMVFVFLPNIMIIATSFLTRddanlvemvftLDNYYRLF-DPMYAEVLLHSINMAVVATLA 79
Cdd:COG1178 1 MSTRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG-----------LANFWALLsDPYLWRALGNTLLLALLVTLL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 80 CLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIIDKPLriIYTPEAVVLGLV 159
Cdd:COG1178 70 SLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPD--IYGLGGIILVLV 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 160 YILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGAKNLLIGn 239
Cdd:COG1178 148 LFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTT- 226
|
250 260 270
....*....|....*....|....*....|....*...
gi 1391268036 240 VIKSQFLNIRDWPFGAATSICLTLVMGLMLFVYYRAVK 277
Cdd:COG1178 227 AIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRR 264
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
2-277 |
4.29e-27 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 105.96 E-value: 4.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 2 KKTRKLFQNIVITGVvgwlMVFVFLPNIMIIATSFLTRDDANLVEMVFTLDNYYRLF-DPMYAEVLLHSINMAVVATLAC 80
Cdd:COG1177 2 SRLGRLLLRLFLALV----LLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFsDPRLLDALLNSLLIALLSTLLA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 81 LLLGYPFAYFLAKMPKKIQPLMLFLLIVPFwTNSLIrIYGLKIFLstkgyfneFLLWIGIIDKPLriiytpeAVVLGLVY 160
Cdd:COG1177 78 TVLGTPAALALARYRFRGRRLLLALLLLPL-VVPGI-VLGVALLL--------LFSALGLSGGLW-------GLILAHVV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 161 ILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGAKN----LL 236
Cdd:COG1177 141 FTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVttlpVY 220
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1391268036 237 IGNVIKSQFlnirdWPFGAATSICLTLVMGLMLFVYYRAVK 277
Cdd:COG1177 221 IYSMIRRGI-----SPEINALSTLLILLSLLLLLLAERLRR 256
|
|
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
58-223 |
2.67e-24 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 97.43 E-value: 2.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 58 FDPMYAEVLLHSINMAVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFwtnslirI-------YGLKIFLSTKGY 130
Cdd:COG4149 1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPL-------VlpptvlgFYLLLLFGRNGP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 131 FNEFLLWIGIIdkplRIIYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIA 210
Cdd:COG4149 74 LGQLLEELFGI----SLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILA 149
|
170
....*....|...
gi 1391268036 211 GCLLVMLPAMGLF 223
Cdd:COG4149 150 GAVLAFARALGEF 162
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
1-223 |
3.27e-22 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 92.89 E-value: 3.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 1 MKKTRKLFQNIVITGVVGWLMVFVFLPNIMIIATSFLTrddanlvemvfTLDNYYR-LFDPMYAEVLLHSINMAVVATLA 79
Cdd:COG0555 1 MSRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGL-----------GWAEFWAvLTSPRVLAALKLSLGTALIAALI 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 80 CLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIidkplRIIYTPEAVVLGLV 159
Cdd:COG0555 70 NLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGI-----KVAFTPLGIVLAQT 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1391268036 160 YILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF 223
Cdd:COG0555 145 FVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF 208
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
11-277 |
7.85e-21 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 91.76 E-value: 7.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 11 IVITGVVGWLMVFVFLPNIMIIATSFLTRDDANlvemvFTLDNYYR-LFDPMYAEVLLHSINMAVVATLACLLLGYPFAY 89
Cdd:COG1178 289 LALALCLLLVLLGLLLPLLALLLWSLTKALDDN-----LTLDNYRFvLLDPSLLRALLNSLLLALLAALLAVLLALLLAY 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 90 FLAKMPKKIQPLMLFLLIVPfwtnsliriYGLK-IFLSTkGYFnefLLWIGIIdkPLRIIYTPEAVVLGLVYILLPFMVL 168
Cdd:COG1178 364 LVRRRRGRLARLLDRLAMLP---------YAVPgIVLGL-GLL---LLFNRPL--PLLLYGTLAILVLAYVVRFLPFALR 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 169 PLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGAKNLLIGNVIKsQFLNI 248
Cdd:COG1178 429 SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIY-QLASS 507
|
250 260
....*....|....*....|....*....
gi 1391268036 249 RDWPFGAATSICLTLVMGLMLFVYYRAVK 277
Cdd:COG1178 508 GRYGEAAALALLLVLVSLLPVLLLERLLG 536
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
20-277 |
1.38e-15 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 75.17 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 20 LMVFVFLPNIMIIATSFlTRDDANLVEMVFT-LDNYYRLF-DPMYAEVLLHSINMAVVATLACLLLGYPFAYFLAKmPKK 97
Cdd:COG1175 31 LLVFVLYPLLYTLYLSF-TDWNLLGPPPEFVgLDNYARLFtDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 98 IQPLMLFLLIVPFWTNSLIRIYGLK-IFLSTKGYFNEFLLWIGIidKPLRIIYTPE----AVVLGLVYILLPFMVLPLYS 172
Cdd:COG1175 109 GRGFFRTLFFLPWVISPVVVALIWKwLFNPDYGLLNALLGALGL--EPINWLGDPSlalpAVIIVTVWKGTGFNMLIFLA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 173 SIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLM--GGAKN--LLIGNVIKSQFLNI 248
Cdd:COG1175 187 GLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtgGGPGNstTTLVLYIYQTAFQQ 266
|
250 260
....*....|....*....|....*....
gi 1391268036 249 RDWPFGAATSICLTLVMGLMLFVYYRAVK 277
Cdd:COG1175 267 FDFGYASAIAVVLFLIILVLTLLQLRLLR 295
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
20-276 |
3.75e-15 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 73.88 E-value: 3.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 20 LMVFVFLPNIMIIATSFltRDDANLvemvfTLDNYYRLF-DPMYAEVLLHSINMAVVATLACLLLGYPFAYFLAKMPKKI 98
Cdd:PRK15050 35 LAPLVVYPLVRVVLQSL--TGEHGL-----GLATYRAVLgSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 99 QPLM-----LFLLIVPFW-TNSLIRIYGlkiflsTKGYFNEFLLWI-GIIDKPLRIIYTPEAVVLGLVYILLPFMVLPLY 171
Cdd:PRK15050 108 ASLVgrfidTFVAFPSFLiTLAFTFLYG------SAGSVNIALQRLfGLEAPPLDFLYSPGGVILAEITFYTPFVVRPLL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 172 SSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVAdLMGGAKNLLIGNV-IKSQFLNIRD 250
Cdd:PRK15050 182 AAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIV-LFTGAKDVVTLPVlIYSKAIVDFD 260
|
250 260
....*....|....*....|....*.
gi 1391268036 251 WPfGAATSICLTLVMGLMLFVYYRAV 276
Cdd:PRK15050 261 YP-TACAIAVVNLALSLGLYALYRRV 285
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
57-271 |
4.27e-15 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 72.43 E-value: 4.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 57 LFDPMYAEVLLHSINMAVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLL 136
Cdd:TIGR01581 14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 137 WIGIidkplRIIYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVM 216
Cdd:TIGR01581 94 AAGI-----QVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAW 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1391268036 217 LPAMGLFFVADLMGGAKNLLIGNVIKSQFLNIRDWPFGAAT--SICLTLVMGLMLFV 271
Cdd:TIGR01581 169 ARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVasALLLLVIAFLLLLV 225
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
2-226 |
1.57e-14 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 72.05 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 2 KKTRKLFQNIVITGVVGWLMVFVFLPNIMIIATSFLTRDDANLVEMV-----FTLDNYYRLF-DPMYAEVLLHSINMAVV 75
Cdd:COG0395 6 RRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSllpseFTLENYRAAFtDGPFGRYLLNSLIVAVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 76 ATLACLLLGYPFAYFLAKMP----KKIQPLMLFLLIVPFWTnSLIRIYGLkiflstkgyfnefLLWIGIIDkplriiyTP 151
Cdd:COG0395 86 STVLSLLLSSLAAYALARFRfrgrKLLFLLILATLMIPGQV-LLIPLYLL-------------FRQLGLLN-------TY 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391268036 152 EAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVA 226
Cdd:COG0395 145 WGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWP 219
|
|
| COG4132 |
COG4132 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
20-272 |
7.27e-13 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443307 [Multi-domain] Cd Length: 286 Bit Score: 67.14 E-value: 7.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 20 LMVFVFL--PNIMIIATSFLTRDDAnlvemvFTLDNYYRLFDPMYAEVLLHSINMAVVATLACLLLGYPFAYFLAKM-PK 96
Cdd:COG4132 23 LFVLLFLllPTVWVVIGAFQDDDGG------FTLANYAELTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGgPG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 97 KIQPLML---------------FLLIVPFWTNSLI----RIYGLKIFLStkgyFNEFLLWiGIIdkplrIIYtpeavvlg 157
Cdd:COG4132 97 WLRRAVLafsgvasnfagvplaFAFIATLGRNGLVtlllKQLGIDLYDG----FNLYSFW-GLI-----LVY-------- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 158 lVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF-FVADLMGGAKNL- 235
Cdd:COG4132 159 -LYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYaTAYALTGGNYNLv 237
|
250 260 270
....*....|....*....|....*....|....*....
gi 1391268036 236 --LIGNVIKSQFLNirDWPFGAATSICLTLVMGLMLFVY 272
Cdd:COG4132 238 piRIGALISGDVLL--DPNLGAALALGMIVIMALVMALY 274
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
66-265 |
1.14e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 64.99 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 66 LLHSINMAVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIgiidkpl 145
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 146 riiytpEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFV 225
Cdd:cd06261 74 ------LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1391268036 226 ADLMGG--AKNLLIGNVIKSQFLNIRDWPFGAATSICLTLVM 265
Cdd:cd06261 148 VSFLGGgeAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
7-277 |
2.49e-12 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 66.63 E-value: 2.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 7 LFQNIVITGVVGWLMVFVFLPNIMIIATSFLTRDDAnlvemVFTLDNYYRLF-DPMYAEVLLHSINMAVVATLACLLLGY 85
Cdd:TIGR03262 1 LIARLLLAGMILALLLFLLLPLLALLTKSVYDSDGD-----FIGLANFAEYFaTPGLLQSLGNSLTVSAIVTAIVVPLAF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 86 PFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIidkplriiYTPEAVVLGLVYILLPF 165
Cdd:TIGR03262 76 AFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI--------YGFWGIVIGEVFYTFPH 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 166 MVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGAKNLLIGNVIKsQF 245
Cdd:TIGR03262 148 ALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYK-QV 226
|
250 260 270
....*....|....*....|....*....|..
gi 1391268036 246 LNIRDWPFGAATSICLtLVMGLMLFVYYRAVK 277
Cdd:TIGR03262 227 IGQQNFPMGAVVGVLL-LLPALLAFGIDRAIQ 257
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
57-230 |
1.59e-10 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 59.55 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 57 LFDPMYAEVLLhSINMAVVATLACLLLGYPFAYFLAK--MPKK--IQPLMLFLLIVPfwtnSLIRIYGLKIFLSTKGYFN 132
Cdd:PRK09421 3 LSDPEWQAVLL-SLKVSSVAVLFSLPFGILVAWLLARcrFPGKslLDSLLHLPLVLP----PVVTGYLLLISMGRRGFIG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 133 EFLL-WIGIIdkplrIIYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAG 211
Cdd:PRK09421 78 QWLYeWFGIS-----FAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAG 152
|
170 180
....*....|....*....|....
gi 1391268036 212 CLLVMLPAMGLF-----FVADLMG 230
Cdd:PRK09421 153 TVLAFARSLGEFgatitFVSNIPG 176
|
|
| permease_CysT |
TIGR02139 |
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ... |
126-221 |
1.79e-10 |
|
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]
Pssm-ID: 131194 Cd Length: 265 Bit Score: 60.03 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 126 STKGYFNEFLLWIGIidkplRIIYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTM 205
Cdd:TIGR02139 112 SPNGWIGSFLAPLGI-----KIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALL 186
|
90
....*....|....*.
gi 1391268036 206 PGIIAGCLLVMLPAMG 221
Cdd:TIGR02139 187 PALLTGFALAFARAVG 202
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
69-223 |
7.35e-10 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 58.10 E-value: 7.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 69 SINMAVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIidkplRII 148
Cdd:CHL00187 60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGI-----QIV 134
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391268036 149 YTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF 223
Cdd:CHL00187 135 FTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
|
|
| 3a0106s02 |
TIGR00969 |
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ... |
59-223 |
1.49e-09 |
|
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]
Pssm-ID: 273370 Cd Length: 271 Bit Score: 57.36 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 59 DPMYAEVLLHSINMAVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWI 138
Cdd:TIGR00969 55 DPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASF 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 139 GIidkplRIIYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLP 218
Cdd:TIGR00969 135 GI-----QIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFAR 209
|
....*
gi 1391268036 219 AMGLF 223
Cdd:TIGR00969 210 ALGEF 214
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
22-214 |
2.16e-09 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 56.92 E-value: 2.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 22 VFVFLPNIMIIATSFlTRDDANLVEMVFTLDNYYRLF--DPMyAEVLLHSINMAVV-ATLACLLLGY-PFAYFLAKMP-K 96
Cdd:PRK09500 15 AYLYIPIIILIVNSF-NSSRFGINWKGFTTKWYELLFnnDSL-LQAAQHSLTMAVFsATFATLIGSLtAVALYRYRFRgK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 97 KIQPLMLFLLIVPfwTNSLIRIYGLKIFLSTKGYFNEFLLWIGIIDkplriiytpeavvlglvyILLPFMVLPLYSSIEK 176
Cdd:PRK09500 93 KFVSGMLFVVMMS--PDIVMAISLLVLFMLLGIQLGFWSLLFAHIT------------------FCLPFVVVTVYSRLKG 152
|
170 180 190
....*....|....*....|....*....|....*...
gi 1391268036 177 LDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLL 214
Cdd:PRK09500 153 FDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLL 190
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
73-270 |
1.31e-07 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 51.68 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 73 AVVATLACLLLGYPFAYFLAKMPKKIQPLMLFLLIVPFWTNSLIRIYGLKIFLSTKGYFNEFLLWIGIidkplRIIYTPE 152
Cdd:PRK10971 67 AFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDI-----KVTYTWL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 153 AVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVADLMGGa 232
Cdd:PRK10971 142 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG- 220
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1391268036 233 kNLLIGNVIKSQFLNIR----DWPFGAATSICLTLVMGLMLF 270
Cdd:PRK10971 221 -NIAWKTEVTSLMIFVRlqefDYPAASAIASVILAASLLLLF 261
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
147-283 |
2.98e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 49.60 E-value: 2.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391268036 147 IIYTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFFVA 226
Cdd:pfam00528 48 LGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLL 127
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1391268036 227 DLMGGAKNLligNVIKSQFLNIRDWPFGAATSICLTLVMGLMLFVYYRAVKLLHKKV 283
Cdd:pfam00528 128 EFLGSWPGL---GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
134-211 |
4.22e-04 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 40.90 E-value: 4.22e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1391268036 134 FLLWIGIidkplriiyTPEAVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAG 211
Cdd:COG0600 117 LILWFGI---------GEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
161-221 |
5.32e-04 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 40.84 E-value: 5.32e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1391268036 161 ILLPFMVLPLYSSI-----EKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMG 221
Cdd:COG0573 161 IVLAIMILPTITSLsrdalRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALG 226
|
|
| 3a0107s02c |
TIGR00974 |
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ... |
153-221 |
1.08e-03 |
|
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273373 Cd Length: 271 Bit Score: 39.91 E-value: 1.08e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1391268036 153 AVVLGLVYILLPFMVLPLYSSIEKLDKPCLEAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMG 221
Cdd:TIGR00974 130 AGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAG 198
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
183-226 |
2.11e-03 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 38.86 E-value: 2.11e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1391268036 183 EAARDLGANKFQTFIRIIIPLTMPGIIAGCLLVMLPAMG----LFFVA 226
Cdd:COG0581 146 EASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGetapLLFTA 193
|
|
| |
